Citrus Sinensis ID: 025101

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEcccccccEEEEEccEEEEEccccccccEEEEccccccccccEEEEEEcccccEEEEEcccccHHHHHHHHHHccccEEEEEEccccHHHHHHHccccEEEcccccccccHHHHHHHHccccccEEEEccccHHHHHHHHHHHcccccEEEEEEEcccccEEEEcccHHHccccEEEEEEcccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccEEEEccccccccEcEEEEEHHHEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEcHHHcccccHHEEEEEcccccccEEEEEHcHHHHHHHHHHHHHccccEEEEEEEcccccccEEEccHHHHcccEEEEccHHHccHHHHHHHHHHHHHccccccHHHEEEEEEHHHHHHHHHHHHHccccEEEEEEcc
Coil and Loop (DISEMBL)
mprdqtsrfkdlrgetihhfvsvssfseytvLDIAHvvkvdptvppnracllscgvstgvgAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKfeigkrfgvtefvnskncgdksvSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVlgvdqpgsqlslssFEVLHSGKILMGslfgglkaksdipILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Flexible Loop (DISEMBL)
mprdqtsrfkdlrgetihhfvsvssfseyTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRfgvtefvnskncgdksVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Low Complexity Region (SEG)
MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Disordered region (IsUnstruct)
************RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM**
Disordered Region (DISOPRED)
****QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG*
Disordered Region (DISEMBL)
*********KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Disordered Region (DISPRO)
****QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q9FH04	390	Alcohol dehydrogenase-lik	yes	no	0.996	0.658	0.771	1e-116
Q0V7W6	389	Alcohol dehydrogenase-lik	no	no	0.976	0.647	0.628	2e-90
Q9SK86	388	Alcohol dehydrogenase-lik	no	no	0.965	0.641	0.62	1e-89
Q9SK87	386	Alcohol dehydrogenase-lik	no	no	0.968	0.647	0.625	4e-89
Q0DWH1	381	Alcohol dehydrogenase cla	no	no	0.972	0.658	0.507	5e-76
A2XAZ3	381	Alcohol dehydrogenase cla	N/A	no	0.972	0.658	0.507	6e-76
Q96533	379	Alcohol dehydrogenase cla	no	no	0.972	0.662	0.5	2e-75
P80572	378	Alcohol dehydrogenase cla	N/A	no	0.972	0.664	0.492	5e-73
P93629	381	Alcohol dehydrogenase cla	N/A	no	0.980	0.664	0.476	5e-72
Q8LEB2	381	Alcohol dehydrogenase-lik	no	no	0.980	0.664	0.503	1e-69

>sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/258 (77%), Positives = 229/258 (88%), Gaps = 1/258 (0%)

Query: 1   MPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 59
           MPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGVSTG
Sbjct: 133 MPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGVSTG 192

Query: 60  VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 119
           VGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++FGVTE
Sbjct: 193 VGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFGVTE 252

Query: 120 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 179
           FVNS  C    VS++I +MTDGGADYCFECVG +SLVQEAYACCR+GWGKTI LGVD+PG
Sbjct: 253 FVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVDKPG 312

Query: 180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 239
           SQ+ L SF+VLH GKILMGSLFGGLKAK+ IPILLKRY+  ELELDKFVTHEMKFEEIN 
Sbjct: 313 SQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEEIND 372

Query: 240 AFDLLIKGKCLRCVIWMG 257
           AF LL++GKC+RCV+WMG
Sbjct: 373 AFQLLLEGKCIRCVLWMG 390

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q0V7W6|ADHL5_ARATH Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1

 Score =  332 bits (850), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 159/253 (62%), Positives = 204/253 (80%), Gaps = 1/253 (0%)

Query: 6   TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 65
           TSRFKD  GE I+HF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG+GAAW+
Sbjct: 138 TSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTGIGAAWK 197

Query: 66  TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 125
            ANVE GSTV +FGLG++GLAV EGARL GA +IIGVD+  EKFE+GK+FG T+F+NS  
Sbjct: 198 VANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTDFINSTL 257

Query: 126 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 185
           CG+  +S++I +MT GG DY FECVGL SL+ EA++  R G GKT+VLG+D+  + +SL 
Sbjct: 258 CGENKISEVIKEMTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHLTPVSLG 317

Query: 186 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 245
           SF++L  G+ + GSLFGGLK K DIPIL+  Y+ KEL LD F+THE+KFEEIN AFDLL+
Sbjct: 318 SFDLLR-GRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINKAFDLLV 376

Query: 246 KGKCLRCVIWMGE 258
           +GK LRC++WM +
Sbjct: 377 QGKSLRCILWMNK 389

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SK86|ADHL1_ARATH Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1

 Score =  329 bits (844), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 155/250 (62%), Positives = 203/250 (81%), Gaps = 1/250 (0%)

Query: 7   SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 66
           SRFKD  GE IHHF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG+GAAW+ 
Sbjct: 138 SRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTGIGAAWKV 197

Query: 67  ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 126
           ANVE GST+ IFGLG++GLAVAEGARL GA +IIG+D  S+KFE+GK+FG T+F+N   C
Sbjct: 198 ANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTDFINPTLC 257

Query: 127 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 186
           G+K +S++I +MT+GG DY FECVGLASL+ EA+   R G GKT++LG+++  + +SL S
Sbjct: 258 GEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHAAPISLGS 317

Query: 187 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 246
           F++L  G+++ GSLFGGLK+K DIPIL+  Y+ KEL LD F+THE+ F+EIN AF LL +
Sbjct: 318 FDLLR-GRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINKAFALLEE 376

Query: 247 GKCLRCVIWM 256
           GK LRC++WM
Sbjct: 377 GKSLRCILWM 386

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SK87|ADHL2_ARATH Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1

 Score =  327 bits (839), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 157/251 (62%), Positives = 201/251 (80%), Gaps = 1/251 (0%)

Query: 6   TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 65
           TSRFKD RGE IHHF+ VSSF+EYTV+DIAH+VK+ P +P + A LLSC V+TG+GAAW+
Sbjct: 135 TSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVATGLGAAWK 194

Query: 66  TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 125
            A+VE GSTVVIFGLG++GLAVAEG RL GA +IIGVD+   KFEIGKRFG+T+FVN   
Sbjct: 195 VADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGITDFVNPAL 254

Query: 126 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 185
           CG+K++S++I +MTD GADY FEC+GLASL++EA+   R G GKTIVLG++Q    +SL 
Sbjct: 255 CGEKTISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQKALPISLG 314

Query: 186 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 245
           S+++L  G+ + G+LFGGLK K DIPIL+ RY+ KEL L+  +THE+ FEEIN AF LL 
Sbjct: 315 SYDLLR-GRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEINKAFHLLA 373

Query: 246 KGKCLRCVIWM 256
           +G  +RC+IWM
Sbjct: 374 EGNSIRCIIWM 384

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0DWH1|ADHX_ORYSJ Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1

 Score =  284 bits (726), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 129/254 (50%), Positives = 189/254 (74%), Gaps = 3/254 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K++P  P ++ CLL CGVSTG+
Sbjct: 127 MMNDRKSRF-SINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGL 185

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+KF++ K FGVTEF
Sbjct: 186 GAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVTEF 245

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VN K+  DK + Q+I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV   G 
Sbjct: 246 VNPKD-HDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQ 304

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           ++S   F+++ +G++  G+ FGG K++S +P L+++Y++KE+++D++VTH M   +IN A
Sbjct: 305 EISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKA 363

Query: 241 FDLLIKGKCLRCVI 254
           FDLL +G CLRCV+
Sbjct: 364 FDLLHEGGCLRCVL 377

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|A2XAZ3|ADHX_ORYSI Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1

 Score =  284 bits (726), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 129/254 (50%), Positives = 189/254 (74%), Gaps = 3/254 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K++P  P ++ CLL CGVSTG+
Sbjct: 127 MMNDRKSRF-SINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGL 185

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+KF++ K FGVTEF
Sbjct: 186 GAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVTEF 245

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VN K+  DK + Q+I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV   G 
Sbjct: 246 VNPKD-HDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQ 304

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           ++S   F+++ +G++  G+ FGG K++S +P L+++Y++KE+++D++VTH M   +IN A
Sbjct: 305 EISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKA 363

Query: 241 FDLLIKGKCLRCVI 254
           FDLL +G CLRCV+
Sbjct: 364 FDLLHEGGCLRCVL 377

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2

 Score =  282 bits (722), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 127/254 (50%), Positives = 188/254 (74%), Gaps = 3/254 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DPT P ++ CLL CGV TG+
Sbjct: 125 MMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGL 183

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+K+E  K+FGV EF
Sbjct: 184 GAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEF 243

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VN K+  DK + ++I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV   G 
Sbjct: 244 VNPKD-HDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 302

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           ++S   F+++ +G++  G+ FGG K+++ +P L+++YM+KE+++D+++TH +   EIN A
Sbjct: 303 EISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKA 361

Query: 241 FDLLIKGKCLRCVI 254
           FDLL +G CLRCV+
Sbjct: 362 FDLLHEGTCLRCVL 375

Plays a central role in formaldehyde detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P80572|ADHX_PEA Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1

 Score =  274 bits (700), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 125/254 (49%), Positives = 186/254 (73%), Gaps = 3/254 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           M  D+ SRF  ++G+ I+HF+  S+FS+YTV+    V K+ P  P ++ CLL CGV TG+
Sbjct: 124 MMADRKSRF-SVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLLGCGVPTGL 182

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S K++  K FGVTEF
Sbjct: 183 GAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKYDTAKNFGVTEF 242

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           +N K+  +K + Q+IID+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV   G 
Sbjct: 243 INPKD-HEKPIQQVIIDLTDGGVDYSFECLGNVSVMRSALECCHKGWGTSVIVGVAASGQ 301

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           ++S   F+++ +G++  G+ FGG K++S +P L+++Y+ KE+++D+++TH +   EIN A
Sbjct: 302 EISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLLEINKA 360

Query: 241 FDLLIKGKCLRCVI 254
           FDLL +G+CLRCV+
Sbjct: 361 FDLLHEGQCLRCVL 374

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P93629|ADHX_MAIZE Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1

 Score =  271 bits (692), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 122/256 (47%), Positives = 183/256 (71%), Gaps = 3/256 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           M  D  SRF  + G+ I+HF+  S+FS+YTV+    V K++P  P ++ CLL CGV TG+
Sbjct: 127 MMNDMKSRFS-VNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTGL 185

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GA W TA VE GS V +FGLG++GLAVAEGA+  GA+R+IG+D+ ++KF++ K FGVTEF
Sbjct: 186 GAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKNFGVTEF 245

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VN K   DK + Q+++D+TDGG DY FEC+G  S+++ A  C  KGWG ++++GV   G 
Sbjct: 246 VNPKE-HDKPIQQVLVDLTDGGVDYSFECIGNVSIMRAALECSDKGWGTSVIVGVAASGQ 304

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           ++S   F+++ +G++  G+ FGG K+++ +P L+ +YM KE+++D+++TH M   +IN A
Sbjct: 305 EISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDA 363

Query: 241 FDLLIKGKCLRCVIWM 256
           F LL +G CLRCV+ M
Sbjct: 364 FHLLHEGGCLRCVLAM 379

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|Q8LEB2|ADHL6_ARATH Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2

 Score =  263 bits (671), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/256 (50%), Positives = 182/256 (71%), Gaps = 3/256 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           M  DQ +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+ G+
Sbjct: 127 MHSDQKTRF-SIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGL 185

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAAW  A+V+ GS+VVIFGLG++GL+VA+GA+L GA +I+GVD+   K E  K FGVT+F
Sbjct: 186 GAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTDF 245

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           +NS +  +  + Q+I  MT GGAD+ FECVG   +   A   C  GWG T+ LGV +   
Sbjct: 246 INSNDLSEP-IPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKP 304

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           ++S + + +  SGK L G+LFGG K KSD+P L+ +YM+KE+ +D+F+TH + F+EIN A
Sbjct: 305 EVS-AHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKA 363

Query: 241 FDLLIKGKCLRCVIWM 256
           F L+ +GKCLRCV+ M
Sbjct: 364 FVLMREGKCLRCVLHM 379

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
255539138	386	alcohol dehydrogenase, putative [Ricinus	1.0	0.668	0.802	1e-119
225459818	384	PREDICTED: alcohol dehydrogenase-like 7	0.992	0.666	0.773	1e-117
7705214	389	alcohol dehydrogenase ADH [Solanum lycop	0.984	0.652	0.771	1e-116
356574454	392	PREDICTED: alcohol dehydrogenase-like 7-	0.992	0.653	0.769	1e-115
15238330	390	alcohol dehydrogenase-like 7 [Arabidopsi	0.996	0.658	0.771	1e-115
356554321	388	PREDICTED: alcohol dehydrogenase-like 7-	0.992	0.659	0.781	1e-115
356574456	389	PREDICTED: alcohol dehydrogenase-like 7-	0.992	0.658	0.769	1e-115
356554319	387	PREDICTED: alcohol dehydrogenase-like 7-	0.992	0.661	0.781	1e-114
224065707	398	predicted protein [Populus trichocarpa]	0.992	0.643	0.761	1e-114
356501338	387	PREDICTED: alcohol dehydrogenase-like 7-	0.992	0.661	0.769	1e-114

>gi|255539138|ref|XP_002510634.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223551335|gb|EEF52821.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/258 (80%), Positives = 235/258 (91%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MPR +TSRF DL GE ++HF+SVSSFS+YTV+DIAH+ KVDP++PPNRACLLSCGVSTGV
Sbjct: 129 MPRYETSRFTDLNGEALYHFLSVSSFSQYTVIDIAHLTKVDPSIPPNRACLLSCGVSTGV 188

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAAWRTANVE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD    KFEIGK+FGVTEF
Sbjct: 189 GAAWRTANVEAGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDTNPNKFEIGKKFGVTEF 248

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           V++ + G+KS SQ+I +MT GGADYCFECVGLASLV+EAY+CCRKGWGKTIVLGVD+PG+
Sbjct: 249 VSAGDLGNKSASQVINEMTGGGADYCFECVGLASLVREAYSCCRKGWGKTIVLGVDKPGA 308

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           QLSLSSF+VLHSGKIL GSLFGGLKAKSDIP+LLKRY  KEL+LD+FVTHE+ FE+IN A
Sbjct: 309 QLSLSSFDVLHSGKILTGSLFGGLKAKSDIPVLLKRYTAKELQLDEFVTHEINFEDINKA 368

Query: 241 FDLLIKGKCLRCVIWMGE 258
           FDLLI G+ LRCVIWM +
Sbjct: 369 FDLLIGGESLRCVIWMNK 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459818|ref|XP_002285916.1| PREDICTED: alcohol dehydrogenase-like 7 [Vitis vinifera] gi|302141683|emb|CBI18886.3| unnamed protein product [Vitis vinifera]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/256 (77%), Positives = 233/256 (91%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MPR ++SRF DL+GE ++HF+ VSSFSEYTV+DIA++ K+DP +PPNRACL SCGVSTGV
Sbjct: 127 MPRYESSRFTDLKGEVLYHFLFVSSFSEYTVVDIANITKIDPNIPPNRACLFSCGVSTGV 186

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAAW+TANVE GSTV IFGLG+IGLAVAEGARLCGA+RIIGVD+  +KFEIGK+FGVT+F
Sbjct: 187 GAAWKTANVEKGSTVAIFGLGAIGLAVAEGARLCGASRIIGVDLNPDKFEIGKKFGVTDF 246

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VNS NCG+K V Q+I++MTDGGADYCFECVG ASLV EA+ACCRKGWGKTIVLGVD+PGS
Sbjct: 247 VNSGNCGNKPVKQVIMEMTDGGADYCFECVGAASLVHEAFACCRKGWGKTIVLGVDRPGS 306

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
            L+  SF++LHSGK LMGSL+GG+K KSDIPILLKRYMDKEL++DKFVTHEM+FE+IN A
Sbjct: 307 MLNFLSFDILHSGKSLMGSLYGGVKPKSDIPILLKRYMDKELDVDKFVTHEMRFEDINKA 366

Query: 241 FDLLIKGKCLRCVIWM 256
           FDLLI+GK LRCV+WM
Sbjct: 367 FDLLIQGKSLRCVLWM 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7705214|gb|AAB33480.2| alcohol dehydrogenase ADH [Solanum lycopersicum]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/254 (77%), Positives = 230/254 (90%)

Query: 3   RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 62
           R+ TSRF +  GET+HHF+ +SSFSEYTV+D+ +V K+DP +PPNRACLLSCGVSTGVGA
Sbjct: 133 RNDTSRFSNAAGETLHHFLYISSFSEYTVVDVVNVTKIDPEIPPNRACLLSCGVSTGVGA 192

Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           AW+TANVE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD+ S KFEIGK+FG+TEFVN
Sbjct: 193 AWKTANVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDINSNKFEIGKQFGITEFVN 252

Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
           SK+C DK +SQ+II+MTDGGADYCFECVGLA+LVQEA+ CCRKGWGKT+VLGVD+P + L
Sbjct: 253 SKSCVDKPISQVIIEMTDGGADYCFECVGLATLVQEAFTCCRKGWGKTVVLGVDKPDAHL 312

Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           +L+SFEVL S K L G+LFGGLK KSD+PIL+KRY+DKEL+L+KFVTHE+ FE+IN AFD
Sbjct: 313 NLNSFEVLQSQKTLTGALFGGLKPKSDVPILVKRYLDKELQLNKFVTHEVNFEDINKAFD 372

Query: 243 LLIKGKCLRCVIWM 256
           LLI+GK LRCVIWM
Sbjct: 373 LLIQGKSLRCVIWM 386

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574454|ref|XP_003555362.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 1 [Glycine max]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/256 (76%), Positives = 229/256 (89%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MPRD T+RF    GE I+HF+ +SSFSEYTV+DIA+++K+DP +PP+RACLL CGVSTGV
Sbjct: 135 MPRDGTTRFTGQNGEIIYHFLFISSFSEYTVVDIANLIKIDPEIPPDRACLLGCGVSTGV 194

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAAWRTA VE GSTV IFGLGSIGLAVAEGARLCGATRIIGVD+  EKFEIGK+FGVT+F
Sbjct: 195 GAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATRIIGVDINPEKFEIGKKFGVTDF 254

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VN+  CG K V Q+II++TDGGADYCFECVG+ASLV EAYA CRKGWGKTIVLGVD+PG+
Sbjct: 255 VNAGECGGKPVGQVIIEITDGGADYCFECVGMASLVHEAYASCRKGWGKTIVLGVDKPGA 314

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           +++LSS+EVLH GK LMGSLFGGLK KS +PILLKRYMDKEL+LDKFVTHE++F++IN A
Sbjct: 315 RINLSSYEVLHDGKSLMGSLFGGLKPKSHVPILLKRYMDKELQLDKFVTHEVEFKDINKA 374

Query: 241 FDLLIKGKCLRCVIWM 256
           FDLL KG+CLRCVIWM
Sbjct: 375 FDLLSKGECLRCVIWM 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238330|ref|NP_199040.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana] gi|75333830|sp|Q9FH04.1|ADHL7_ARATH RecName: Full=Alcohol dehydrogenase-like 7 gi|10177010|dbj|BAB10198.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|19698971|gb|AAL91221.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|22136298|gb|AAM91227.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|332007405|gb|AED94788.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/258 (77%), Positives = 229/258 (88%), Gaps = 1/258 (0%)

Query: 1   MPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 59
           MPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGVSTG
Sbjct: 133 MPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGVSTG 192

Query: 60  VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 119
           VGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++FGVTE
Sbjct: 193 VGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFGVTE 252

Query: 120 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 179
           FVNS  C    VS++I +MTDGGADYCFECVG +SLVQEAYACCR+GWGKTI LGVD+PG
Sbjct: 253 FVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVDKPG 312

Query: 180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 239
           SQ+ L SF+VLH GKILMGSLFGGLKAK+ IPILLKRY+  ELELDKFVTHEMKFEEIN 
Sbjct: 313 SQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEEIND 372

Query: 240 AFDLLIKGKCLRCVIWMG 257
           AF LL++GKC+RCV+WMG
Sbjct: 373 AFQLLLEGKCIRCVLWMG 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554321|ref|XP_003545496.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 2 [Glycine max]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/256 (78%), Positives = 229/256 (89%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MPR  TSRF DL+G+ IHHF+ VSSFSEYTV+DIAH+ K+DP +PPNRACLLSCGVSTGV
Sbjct: 131 MPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRACLLSCGVSTGV 190

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAAWRTA VE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  EK+E GK+FG+T+F
Sbjct: 191 GAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYETGKKFGLTDF 250

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           V++    +KSVSQ+II+MT GGADYCFECVG+A+LVQEAYA CRKGWGK IVLGV++PGS
Sbjct: 251 VHAGESENKSVSQVIIEMTGGGADYCFECVGMATLVQEAYASCRKGWGKAIVLGVEKPGS 310

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
            LSLS  EVLHSGK L+G LFGGLK KSD+PILLKRYMDKEL LD+FVTHE++F++IN A
Sbjct: 311 MLSLSCNEVLHSGKSLVGCLFGGLKPKSDVPILLKRYMDKELNLDEFVTHEVEFKDINKA 370

Query: 241 FDLLIKGKCLRCVIWM 256
           FDLLI+G+CLRCVIWM
Sbjct: 371 FDLLIEGQCLRCVIWM 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574456|ref|XP_003555363.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 2 [Glycine max]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/256 (76%), Positives = 229/256 (89%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MPRD T+RF    GE I+HF+ +SSFSEYTV+DIA+++K+DP +PP+RACLL CGVSTGV
Sbjct: 132 MPRDGTTRFTGQNGEIIYHFLFISSFSEYTVVDIANLIKIDPEIPPDRACLLGCGVSTGV 191

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAAWRTA VE GSTV IFGLGSIGLAVAEGARLCGATRIIGVD+  EKFEIGK+FGVT+F
Sbjct: 192 GAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATRIIGVDINPEKFEIGKKFGVTDF 251

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VN+  CG K V Q+II++TDGGADYCFECVG+ASLV EAYA CRKGWGKTIVLGVD+PG+
Sbjct: 252 VNAGECGGKPVGQVIIEITDGGADYCFECVGMASLVHEAYASCRKGWGKTIVLGVDKPGA 311

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           +++LSS+EVLH GK LMGSLFGGLK KS +PILLKRYMDKEL+LDKFVTHE++F++IN A
Sbjct: 312 RINLSSYEVLHDGKSLMGSLFGGLKPKSHVPILLKRYMDKELQLDKFVTHEVEFKDINKA 371

Query: 241 FDLLIKGKCLRCVIWM 256
           FDLL KG+CLRCVIWM
Sbjct: 372 FDLLSKGECLRCVIWM 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554319|ref|XP_003545495.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 1 [Glycine max]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/256 (78%), Positives = 229/256 (89%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MPR  TSRF DL+G+ IHHF+ VSSFSEYTV+DIAH+ K+DP +PPNRACLLSCGVSTGV
Sbjct: 130 MPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRACLLSCGVSTGV 189

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAAWRTA VE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  EK+E GK+FG+T+F
Sbjct: 190 GAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYETGKKFGLTDF 249

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           V++    +KSVSQ+II+MT GGADYCFECVG+A+LVQEAYA CRKGWGK IVLGV++PGS
Sbjct: 250 VHAGESENKSVSQVIIEMTGGGADYCFECVGMATLVQEAYASCRKGWGKAIVLGVEKPGS 309

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
            LSLS  EVLHSGK L+G LFGGLK KSD+PILLKRYMDKEL LD+FVTHE++F++IN A
Sbjct: 310 MLSLSCNEVLHSGKSLVGCLFGGLKPKSDVPILLKRYMDKELNLDEFVTHEVEFKDINKA 369

Query: 241 FDLLIKGKCLRCVIWM 256
           FDLLI+G+CLRCVIWM
Sbjct: 370 FDLLIEGQCLRCVIWM 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065707|ref|XP_002301931.1| predicted protein [Populus trichocarpa] gi|222843657|gb|EEE81204.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/256 (76%), Positives = 231/256 (90%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MPRD+TSRF +L+GE ++HF++VSSFSEYTV+D AH+VK+DP++PP++ACLLSCGVSTGV
Sbjct: 130 MPRDKTSRFTNLKGEVLYHFLNVSSFSEYTVVDTAHIVKIDPSIPPSKACLLSCGVSTGV 189

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAAWRTANVE GSTVVIFGLGSIGLAVAEGAR+ GAT+IIGVDV  EKFEI K+FGVT+F
Sbjct: 190 GAAWRTANVEAGSTVVIFGLGSIGLAVAEGARISGATKIIGVDVNQEKFEIAKKFGVTDF 249

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VN   CGDK VSQ+I +MT GGADYCFECVGL SL+++AYACCRKGWGKTI+LGV++P S
Sbjct: 250 VNVGECGDKPVSQVINEMTGGGADYCFECVGLVSLMEQAYACCRKGWGKTIILGVEKPES 309

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           ++SL   +VL SGK L G+LFGGLKAKSDIPILLKRYMDKELELDK+VTHE+ F++IN A
Sbjct: 310 RVSLPCADVLQSGKTLTGALFGGLKAKSDIPILLKRYMDKELELDKYVTHEINFKDINKA 369

Query: 241 FDLLIKGKCLRCVIWM 256
           FDLL++GK LRCVIWM
Sbjct: 370 FDLLLEGKSLRCVIWM 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501338|ref|XP_003519482.1| PREDICTED: alcohol dehydrogenase-like 7-like [Glycine max]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/256 (76%), Positives = 228/256 (89%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MPR  TSRF DL+GE IHHF+SVSSFSEYTV+DIAH++K+DP +PPNRACL+SCG+S G+
Sbjct: 130 MPRYATSRFTDLKGEIIHHFLSVSSFSEYTVVDIAHLIKIDPAIPPNRACLISCGISAGI 189

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAAWR A VE GSTV IFGLGSIGLAVAEGARLCGAT+IIGVDV  E++EIGKRFG+T+F
Sbjct: 190 GAAWRAAGVEPGSTVAIFGLGSIGLAVAEGARLCGATKIIGVDVNPERYEIGKRFGLTDF 249

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           V+S  C +KSVSQ+II+MT GGADYCFECVG+ASL+ EAYA CRKGWGKTIVLGVD+PGS
Sbjct: 250 VHSGECENKSVSQVIIEMTGGGADYCFECVGMASLMHEAYASCRKGWGKTIVLGVDKPGS 309

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           +L+LS  EVL SGK L G LFGGLK KS +PILLKRYMDKEL LD+FVTHEM+F++IN A
Sbjct: 310 KLNLSCSEVLVSGKSLRGCLFGGLKPKSHVPILLKRYMDKELNLDEFVTHEMEFKDINKA 369

Query: 241 FDLLIKGKCLRCVIWM 256
           FDLLI+G+CLRCVIWM
Sbjct: 370 FDLLIEGQCLRCVIWM 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2157627	390	AT5G42250 [Arabidopsis thalian	0.996	0.658	0.771	1.5e-108
TAIR|locus:2120663	389	AT4G22110 [Arabidopsis thalian	0.976	0.647	0.628	1.4e-85
TAIR|locus:2009522	388	AT1G22430 [Arabidopsis thalian	0.965	0.641	0.62	1.8e-85
TAIR|locus:2009512	386	AT1G22440 [Arabidopsis thalian	0.968	0.647	0.625	1.5e-83
TAIR|locus:2184575	381	AT5G24760 [Arabidopsis thalian	0.980	0.664	0.503	2.2e-66
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.968	0.664	0.472	1.4e-62
TIGR_CMR|SO_2054	379	SO_2054 "alcohol dehydrogenase	0.965	0.656	0.458	1.6e-61
TIGR_CMR|SO_A0161	376	SO_A0161 "zinc-containing alco	0.965	0.662	0.458	2.7e-61
DICTYBASE|DDB_G0281865	379	adh5 "alcohol dehydrogenase, c	0.972	0.662	0.476	7.1e-61
UNIPROTKB|F1PLM5	376	F1PLM5 "Uncharacterized protei	0.968	0.664	0.448	9e-61

TAIR|locus:2157627 AT5G42250 [Arabidopsis thaliana (taxid:3702)]

 Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
 Identities = 199/258 (77%), Positives = 229/258 (88%)

Query:     1 MPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 59
             MPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGVSTG
Sbjct:   133 MPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGVSTG 192

Query:    60 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 119
             VGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++FGVTE
Sbjct:   193 VGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFGVTE 252

Query:   120 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 179
             FVNS  C    VS++I +MTDGGADYCFECVG +SLVQEAYACCR+GWGKTI LGVD+PG
Sbjct:   253 FVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVDKPG 312

Query:   180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 239
             SQ+ L SF+VLH GKILMGSLFGGLKAK+ IPILLKRY+  ELELDKFVTHEMKFEEIN 
Sbjct:   313 SQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEEIND 372

Query:   240 AFDLLIKGKCLRCVIWMG 257
             AF LL++GKC+RCV+WMG
Sbjct:   373 AFQLLLEGKCIRCVLWMG 390

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2120663 AT4G22110 [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 159/253 (62%), Positives = 204/253 (80%)

Query:     6 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 65
             TSRFKD  GE I+HF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG+GAAW+
Sbjct:   138 TSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTGIGAAWK 197

Query:    66 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 125
              ANVE GSTV +FGLG++GLAV EGARL GA +IIGVD+  EKFE+GK+FG T+F+NS  
Sbjct:   198 VANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTDFINSTL 257

Query:   126 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 185
             CG+  +S++I +MT GG DY FECVGL SL+ EA++  R G GKT+VLG+D+  + +SL 
Sbjct:   258 CGENKISEVIKEMTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHLTPVSLG 317

Query:   186 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 245
             SF++L  G+ + GSLFGGLK K DIPIL+  Y+ KEL LD F+THE+KFEEIN AFDLL+
Sbjct:   318 SFDLLR-GRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINKAFDLLV 376

Query:   246 KGKCLRCVIWMGE 258
             +GK LRC++WM +
Sbjct:   377 QGKSLRCILWMNK 389

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2009522 AT1G22430 [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 155/250 (62%), Positives = 203/250 (81%)

Query:     7 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 66
             SRFKD  GE IHHF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG+GAAW+ 
Sbjct:   138 SRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTGIGAAWKV 197

Query:    67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 126
             ANVE GST+ IFGLG++GLAVAEGARL GA +IIG+D  S+KFE+GK+FG T+F+N   C
Sbjct:   198 ANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTDFINPTLC 257

Query:   127 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 186
             G+K +S++I +MT+GG DY FECVGLASL+ EA+   R G GKT++LG+++  + +SL S
Sbjct:   258 GEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHAAPISLGS 317

Query:   187 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 246
             F++L  G+++ GSLFGGLK+K DIPIL+  Y+ KEL LD F+THE+ F+EIN AF LL +
Sbjct:   318 FDLLR-GRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINKAFALLEE 376

Query:   247 GKCLRCVIWM 256
             GK LRC++WM
Sbjct:   377 GKSLRCILWM 386

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2009512 AT1G22440 [Arabidopsis thaliana (taxid:3702)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 157/251 (62%), Positives = 201/251 (80%)

Query:     6 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 65
             TSRFKD RGE IHHF+ VSSF+EYTV+DIAH+VK+ P +P + A LLSC V+TG+GAAW+
Sbjct:   135 TSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVATGLGAAWK 194

Query:    66 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 125
              A+VE GSTVVIFGLG++GLAVAEG RL GA +IIGVD+   KFEIGKRFG+T+FVN   
Sbjct:   195 VADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGITDFVNPAL 254

Query:   126 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 185
             CG+K++S++I +MTD GADY FEC+GLASL++EA+   R G GKTIVLG++Q    +SL 
Sbjct:   255 CGEKTISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQKALPISLG 314

Query:   186 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 245
             S+++L  G+ + G+LFGGLK K DIPIL+ RY+ KEL L+  +THE+ FEEIN AF LL 
Sbjct:   315 SYDLLR-GRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEINKAFHLLA 373

Query:   246 KGKCLRCVIWM 256
             +G  +RC+IWM
Sbjct:   374 EGNSIRCIIWM 384

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2184575 AT5G24760 [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 129/256 (50%), Positives = 182/256 (71%)

Query:     1 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
             M  DQ +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+ G+
Sbjct:   127 MHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGL 185

Query:    61 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
             GAAW  A+V+ GS+VVIFGLG++GL+VA+GA+L GA +I+GVD+   K E  K FGVT+F
Sbjct:   186 GAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTDF 245

Query:   121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
             +NS +  +  + Q+I  MT GGAD+ FECVG   +   A   C  GWG T+ LGV +   
Sbjct:   246 INSNDLSEP-IPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKP 304

Query:   181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
             ++S + + +  SGK L G+LFGG K KSD+P L+ +YM+KE+ +D+F+TH + F+EIN A
Sbjct:   305 EVS-AHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKA 363

Query:   241 FDLLIKGKCLRCVIWM 256
             F L+ +GKCLRCV+ M
Sbjct:   364 FVLMREGKCLRCVLHM 379

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 120/254 (47%), Positives = 173/254 (68%)

Query:     1 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
             MP D TSRF   +G+ + HF+  S+FSEYTV+    + KVD   P ++ CLL CG+STG 
Sbjct:   125 MP-DNTSRFT-CKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGISTGY 182

Query:    61 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
             GAA  TA VE GST  +FGLG++GLAV  G +  GATRIIG+DV  +KFEI K+FG TEF
Sbjct:   183 GAAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAKKFGATEF 242

Query:   121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
             VN K+   K + ++++++TDGG DY FEC+G   +++ A   C KGWG ++++GV   G 
Sbjct:   243 VNPKD-HSKPIQEVLVELTDGGVDYSFECIGNVGIMRAALEACHKGWGTSVIIGVAGAGQ 301

Query:   181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
             ++S   F+++ +G+   G+ FGG K+   +P L+  YM+K+L +D+FVTH + F +IN A
Sbjct:   302 EISTRPFQLV-TGRTWKGTAFGGWKSVESVPKLVNDYMNKKLMVDEFVTHTLPFAQINEA 360

Query:   241 FDLLIKGKCLRCVI 254
             FDL+  GK +R V+
Sbjct:   361 FDLMHAGKSIRAVL 374

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TIGR_CMR|SO_2054 SO_2054 "alcohol dehydrogenase class III" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 117/255 (45%), Positives = 175/255 (68%)

Query:     1 MPRDQTSRF-KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 59
             MP D T+RF KD  G+ I H++  S+FSEYTVL    + KV+ T P    CLL CGV+TG
Sbjct:   126 MP-DGTTRFYKD--GQPIFHYMGCSTFSEYTVLPEISLAKVNKTAPLKEICLLGCGVTTG 182

Query:    60 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 119
             +GA   TA VE G+TV IFGLG IGL+   GA +  A+RII +D+   KFE+ ++ G T+
Sbjct:   183 MGAVMNTAKVEAGATVAIFGLGGIGLSAIIGATMAKASRIIAIDINESKFELARKLGATD 242

Query:   120 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 179
              +N KN  DK + ++I++MTDGG DY FEC+G  ++++ A  CC KGWG+++++GV   G
Sbjct:   243 CINPKNF-DKPIQEVIVEMTDGGVDYSFECIGNVNVMRSALECCHKGWGESVIIGVAGAG 301

Query:   180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 239
              ++S   F+++ +G++  GS FGG+K +S +P ++++Y+  E +LD F+TH M  E++N 
Sbjct:   302 QEISTRPFQLV-TGRVWRGSAFGGVKGRSQLPKIVEQYLAGEFKLDDFITHTMGLEQVNE 360

Query:   240 AFDLLIKGKCLRCVI 254
             AFDL+ +GK +R VI
Sbjct:   361 AFDLMHEGKSIRSVI 375

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

TIGR_CMR|SO_A0161 SO_A0161 "zinc-containing alcohol dehydrogenase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 117/255 (45%), Positives = 174/255 (68%)

Query:     1 MPRDQTSRF-KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 59
             MP D TSRF KD  G+ I+H++  S+FSEYTVL    + KV+P  P    CLL CGV+TG
Sbjct:   123 MP-DGTSRFSKD--GQIIYHYMGTSTFSEYTVLPEISLAKVNPDAPLEEVCLLGCGVTTG 179

Query:    60 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 119
             +GA   TA VE G+TV IFG+G IGL+   GA +  A+RII +D+   KFE+  + G T+
Sbjct:   180 MGAVMNTAKVEEGATVAIFGMGGIGLSAVIGATMAKASRIIVIDINESKFELAGKLGATD 239

Query:   120 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 179
             F+N K+  DK +  +I+++TDGG DY FEC+G  ++++ A  CC KGWG+++V+GV   G
Sbjct:   240 FINPKDY-DKPIQDVIVELTDGGVDYSFECIGNVNVMRSALECCHKGWGESVVIGVAGAG 298

Query:   180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 239
              ++S   F+++ +G++  GS FGG+K +S++P  ++RY+  E +L  F+TH M  E++N 
Sbjct:   299 QEISTRPFQLV-TGRVWKGSAFGGVKGRSELPEYVERYLAGEFKLSDFITHTMSLEQVND 357

Query:   240 AFDLLIKGKCLRCVI 254
             AFDL+ +GK +R VI
Sbjct:   358 AFDLMHQGKSIRTVI 372

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

DICTYBASE|DDB_G0281865 adh5 "alcohol dehydrogenase, class 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 122/256 (47%), Positives = 179/256 (69%)

Query:     1 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
             MP D T+RFK  +G+ I HF+  S+FS+YTVL       V    P ++ CLL CG++TG 
Sbjct:   125 MP-DGTTRFK-CKGKEIFHFMGTSTFSQYTVLPEISCCVVREDAPLDKVCLLGCGITTGF 182

Query:    61 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
             GAA  TA VE GSTV IFGLG++GL+VA+GA  CGA RIIG+D    KF  GK FG TEF
Sbjct:   183 GAAKITAKVEEGSTVAIFGLGAVGLSVAQGAVDCGAKRIIGIDNNETKFGPGKDFGCTEF 242

Query:   121 VN-SKNCGD-KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 178
             +N SK+  + K++ Q ++D+TDGG DY FEC+G  ++++ A  CC KGWG + ++GV   
Sbjct:   243 INPSKDLPEGKTIQQHLVDITDGGVDYSFECIGNVNVMRAALECCHKGWGVSTIVGVAPA 302

Query:   179 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 238
             G+++S   F+++ +G++  GS FGG+K++S +P ++ +YMDK+L++D++VT      EIN
Sbjct:   303 GAEISTRPFQLV-TGRVWKGSAFGGVKSRSQLPSIIDKYMDKKLKVDEYVTFTYPLNEIN 361

Query:   239 SAFDLLIKGKCLRCVI 254
             +AFD++ +GK LR V+
Sbjct:   362 TAFDVMHEGKSLRSVV 377

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1PLM5 F1PLM5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 114/254 (44%), Positives = 172/254 (67%)

Query:     1 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
             MP D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct:   125 MP-DGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 182

Query:    61 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
             GAA  TA VE GST  +FGLG +GLA   G ++ GA+RIIGVD+  +KF   K FG +E 
Sbjct:   183 GAALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASEC 242

Query:   121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
             +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++++GV   G 
Sbjct:   243 INPQDFS-KPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVIVGVAASGE 301

Query:   181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
             +++   F+++ +G++  G+ FGG K+   +P L+  YM +++++D+FVTH + F++IN A
Sbjct:   302 EIATRPFQLV-TGRVWKGTAFGGWKSVESVPKLVSEYMSRKIKVDEFVTHSLSFDQINEA 360

Query:   241 FDLLIKGKCLRCVI 254
             FDLL  GK +R V+
Sbjct:   361 FDLLHAGKSIRTVV 374

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FH04	ADHL7_ARATH	1, ., 1, ., 1, ., 1	0.7713	0.9961	0.6589	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.963
4th Layer	1.1.1.1	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015544001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (354 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036847001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (485 aa)						•			0.899
	GSVIVG00035907001	SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (215 aa)						•			0.899
	GSVIVG00034061001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (450 aa)						•			0.899
	GSVIVG00028844001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (538 aa)						•			0.899
	GSVIVG00024617001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (485 aa)						•			0.899
	GSVIVG00024065001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (607 aa)						•			0.899
	GSVIVG00020768001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (531 aa)						•			0.899
	GSVIVG00019283001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (549 aa)						•			0.899
	GSVIVG00016425001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (362 aa)						•			0.899
	GSVIVG00016121001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (511 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	1e-143
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-110
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-109
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	2e-99
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	2e-99
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	2e-92
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	9e-89
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	2e-88
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-87
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	8e-84
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	2e-59
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	5e-55
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	1e-52
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	1e-41
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	3e-34
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	6e-32
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	1e-30
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	2e-27
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	3e-26
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	9e-26
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	3e-25
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	2e-24
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	4e-24
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	5e-24
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	8e-24
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	1e-23
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	3e-23
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-22
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	2e-22
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	4e-22
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	5e-21
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	9e-21
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	2e-20
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	3e-18
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	8e-18
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	1e-17
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	2e-17
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	4e-17
cd05281	341	cd05281, TDH, Threonine dehydrogenase	1e-14
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	7e-13
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-12
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	4e-12
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	1e-11
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	2e-11
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	2e-11
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	6e-11
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	6e-11
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	7e-11
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	1e-10
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	1e-10
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	2e-10
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	6e-10
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	7e-10
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	4e-09
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	5e-09
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	4e-08
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	5e-08
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-07
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	4e-06
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	4e-06
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	1e-05
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	2e-05
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	3e-05
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	3e-05
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	5e-05
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	9e-05
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	2e-04
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	3e-04
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	6e-04
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	8e-04
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	0.002
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	0.003
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	0.004
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	0.004
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	0.004

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  405 bits (1044), Expect = e-143
 Identities = 140/255 (54%), Positives = 182/255 (71%), Gaps = 3/255 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           M  D  SRF    G+ I+HFV  S+FSEYTV+ +  V K++P  P ++ CLLSCGVSTG+
Sbjct: 118 MINDGKSRFSI-NGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGL 176

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAAW  A V+ GSTV IFGLG++GLAVAEGAR+ GA+RIIGVD+   KFE  K+FGVTEF
Sbjct: 177 GAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEF 236

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VN K+  DK V ++I +MT GG DY FEC G    +  A+ C   GWG T++LGV    +
Sbjct: 237 VNPKDH-DKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDA 295

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
             S     +L+ G+ L G+LFGG K K+D+P L+++YM KELEL+KF+THE+ F EIN A
Sbjct: 296 VFSTHPMNLLN-GRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKA 354

Query: 241 FDLLIKGKCLRCVIW 255
           FDLL+KG+CLRC++ 
Sbjct: 355 FDLLLKGECLRCILH 369

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  322 bits (827), Expect = e-110
 Identities = 121/255 (47%), Positives = 182/255 (71%), Gaps = 6/255 (2%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVL-DIAHVVKVDPTVPPNRACLLSCGVSTG 59
           MP D TSRF   +G+ I+HF+  S+FSEYTV+ +I+ V K++P  P ++ CLL CGV+TG
Sbjct: 118 MP-DGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEIS-VAKINPEAPLDKVCLLGCGVTTG 174

Query: 60  VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 119
            GA   TA VE GSTV +FGLG++GLAV +GA+  GA+RIIG+D+  +KFE+ K+FG T+
Sbjct: 175 YGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATD 234

Query: 120 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 179
            VN K+  DK + Q++++MTDGG DY FEC+G   +++ A   C KGWG ++++GV   G
Sbjct: 235 CVNPKDH-DKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAG 293

Query: 180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 239
            ++S   F+ L +G++  G+ FGG K++S +P L++ YM  ++++D+F+TH M  +EIN 
Sbjct: 294 QEISTRPFQ-LVTGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINE 352

Query: 240 AFDLLIKGKCLRCVI 254
           AFDL+  GK +R V+
Sbjct: 353 AFDLMHAGKSIRTVV 367

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  318 bits (818), Expect = e-109
 Identities = 130/254 (51%), Positives = 180/254 (70%), Gaps = 5/254 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MP D TSRF   +G+ I+HF+  S+FS+YTV+D  +V K+DP  P    CLL CG STG 
Sbjct: 116 MP-DGTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGY 173

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAAW TA VE GSTV +FGLG++GL+   GA++ GA+RIIGVD+  +KFE  K FG T+F
Sbjct: 174 GAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDF 233

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           +N K+  DK VS++I +MT GG DY FEC G A L+ EA    + GWG ++V+GV  PG+
Sbjct: 234 INPKDS-DKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGV-PPGA 291

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           +LS+  F+++  G+   GS FGG K++SD+P L+ +YM+K+ +LD+ +TH + FEEIN  
Sbjct: 292 ELSIRPFQLI-LGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKG 350

Query: 241 FDLLIKGKCLRCVI 254
           FDL+  G+C+R VI
Sbjct: 351 FDLMKSGECIRTVI 364

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  295 bits (756), Expect = 2e-99
 Identities = 133/255 (52%), Positives = 173/255 (67%), Gaps = 3/255 (1%)

Query: 1   MPRDQTSRFKDLR-GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 59
           M  D  +RF     G+ I+HF++ S+F+EYTVLD A VVK+DP  P  +  LLSCGVSTG
Sbjct: 127 MVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTG 186

Query: 60  VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 119
           VGAAW TANV+ GS+V IFGLG++GLAVAEGAR  GA++IIGVD+  EKFE GK  G+T+
Sbjct: 187 VGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITD 246

Query: 120 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 179
           F+N K+  DK V + I +MT GG DY FEC G   +++EA+     GWG T++LG+    
Sbjct: 247 FINPKDS-DKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTP 305

Query: 180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 239
             L L   E L  G+ + GS+FG  K KS +P L K+ M   + LD F+THE+ FE+IN 
Sbjct: 306 KMLPLHPME-LFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINE 364

Query: 240 AFDLLIKGKCLRCVI 254
           AF LL  GK LRC++
Sbjct: 365 AFQLLEDGKALRCLL 379

Length = 381

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  294 bits (755), Expect = 2e-99
 Identities = 132/256 (51%), Positives = 183/256 (71%), Gaps = 3/256 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           M  DQ +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+ G+
Sbjct: 124 MHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGL 182

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAAW  A+V  GS+VVIFGLG++GL+VA+GA+L GA++IIGVD+  EK E  K FGVT+F
Sbjct: 183 GAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDF 242

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           +N  +   + + Q+I  MT GGADY FECVG   +   A   C  GWG T+ LGV +   
Sbjct: 243 INPNDL-SEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKP 301

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           ++S + + +  SG+ L GSLFGG K KSD+P L+ +YM+KE+ +D+F+TH + F+EIN A
Sbjct: 302 EVS-AHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKA 360

Query: 241 FDLLIKGKCLRCVIWM 256
           F+L+ +GKCLRCVI M
Sbjct: 361 FELMREGKCLRCVIHM 376

Length = 378

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  276 bits (709), Expect = 2e-92
 Identities = 115/253 (45%), Positives = 164/253 (64%), Gaps = 5/253 (1%)

Query: 2   PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 61
             D T+R     G  ++H++  S+F+EYTV+    +VK+DP  P  +ACLL CGV+TG+G
Sbjct: 117 MPDGTTRLSG-NGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIG 175

Query: 62  AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 121
           A   TA VE G TV +FGLG +GLA  +GA+  GA RII VD+  EK E+ K+FG T FV
Sbjct: 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFV 235

Query: 122 NSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 181
           N K   D  V + I+++TDGGADY FECVG   ++++A     +  G ++++GV   G +
Sbjct: 236 NPKEVDD--VVEAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQE 292

Query: 182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF 241
           +S   F+ L +G++  GS FGG + +SDIP L+  YM  +L LD+ VTH +  E+IN AF
Sbjct: 293 ISTRPFQ-LVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAF 351

Query: 242 DLLIKGKCLRCVI 254
           DL+ +GK +R VI
Sbjct: 352 DLMHEGKSIRSVI 364

Length = 366

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  267 bits (684), Expect = 9e-89
 Identities = 107/251 (42%), Positives = 156/251 (62%), Gaps = 3/251 (1%)

Query: 4   DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 63
           D TSRF   +G+ IHHF+  S+FSEYTV+D   V K+D   P  + CL+ CG STG GAA
Sbjct: 124 DGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAA 182

Query: 64  WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 123
             TA V  GST  +FGLG +GL+   G +  GA+RII VD+  +KF   K  G TE +N 
Sbjct: 183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINP 242

Query: 124 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 183
           ++   K + +++ +MTDGG D+ FE +G    ++ A A C +G+G ++++GV      LS
Sbjct: 243 QDY-KKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLS 301

Query: 184 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 243
           ++   +L +G+   G++FGG K+K  +P L+  YM K+  LD  +TH + FE+IN  FDL
Sbjct: 302 INPMLLL-TGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDL 360

Query: 244 LIKGKCLRCVI 254
           L  GK +R V+
Sbjct: 361 LRSGKSIRTVL 371

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  266 bits (681), Expect = 2e-88
 Identities = 118/256 (46%), Positives = 175/256 (68%), Gaps = 4/256 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MP D TSRF    G+ I+H++  S+FSEYTV+    + K++P  P    CLL CGV+TG+
Sbjct: 117 MP-DGTSRFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGI 174

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GA   TA VE G TV +FGLG IGL+V +GAR+  A+RII +D+   KFE+ K+ G T+ 
Sbjct: 175 GAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDC 234

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VN  +  DK + ++I+++TDGG DY FEC+G  ++++ A  CC KGWG++I++GV   G 
Sbjct: 235 VNPND-YDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQ 293

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           ++S   F+ L +G++  GS FGG+K ++++P ++++YM  E+ LD FVTH M  E+IN A
Sbjct: 294 EISTRPFQ-LVTGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEA 352

Query: 241 FDLLIKGKCLRCVIWM 256
           FDL+ +GK +R VI  
Sbjct: 353 FDLMHEGKSIRTVIHY 368

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  264 bits (676), Expect = 1e-87
 Identities = 107/251 (42%), Positives = 162/251 (64%), Gaps = 3/251 (1%)

Query: 4   DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 63
           D TSRF   +G+ IHHF+  S+F+EYTV+    + K+DP  P  + CL+ CG STG GAA
Sbjct: 117 DGTSRFT-CKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAA 175

Query: 64  WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 123
             TA V  GST  +FGLG +GL+V  G +  GA+RII VD+  +KFE  K+ G TE +N 
Sbjct: 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINP 235

Query: 124 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 183
           ++  DK + +++ +MTDGG DY FE +G A  +++A    R G G ++V+GV   G++ +
Sbjct: 236 RD-QDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEAT 294

Query: 184 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 243
           L   ++L +G+ + G++FGG K+K  +P L+  Y  K+  LD+ +TH + FEEIN  FDL
Sbjct: 295 LDPNDLL-TGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDL 353

Query: 244 LIKGKCLRCVI 254
           +  G+ +R ++
Sbjct: 354 MRSGESIRTIL 364

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  254 bits (651), Expect = 8e-84
 Identities = 111/255 (43%), Positives = 151/255 (59%), Gaps = 6/255 (2%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
              D T RF    GE +     + +F+EYTV+  A VVK+D  +P +RA LL CGV+TGV
Sbjct: 113 QLPDGTRRF-TADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGV 171

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GA   TA V  G TV + G G +GL   +GAR+ GA+RII VD + EK E+ +RFG T  
Sbjct: 172 GAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHT 231

Query: 121 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 179
           VN+    +    + + D+TDG GADY FE VG A+ +++A A  RKG G  +V+G+  PG
Sbjct: 232 VNA---SEDDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPG 287

Query: 180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 239
             +SL + E+  S K L GSL+G    + DIP LL  Y    L+LD+ VT     +EIN 
Sbjct: 288 ETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINE 347

Query: 240 AFDLLIKGKCLRCVI 254
           AF  ++ G+  R VI
Sbjct: 348 AFADMLAGENARGVI 362

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  192 bits (489), Expect = 2e-59
 Identities = 91/243 (37%), Positives = 135/243 (55%), Gaps = 4/243 (1%)

Query: 12  LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV 71
           LRG  I+H + VS+F+EY V+    VVK+D  VP   A L  C V TGVGA   TA V  
Sbjct: 132 LRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRP 191

Query: 72  GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSV 131
           G +V + GLG +GL+   GA   GA++++ VD+  +K  + +  G T  VN+   GD + 
Sbjct: 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNA---GDPNA 248

Query: 132 SQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH 191
            + + ++T GG DY FE  G    ++ AY   R+G G T+  G+  P ++LS+ +  ++ 
Sbjct: 249 VEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLSVPALSLVA 307

Query: 192 SGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLR 251
             + L GS  G    + DIP  L  Y+   L +DK +TH +  +EIN  FD L  G+ +R
Sbjct: 308 EERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVR 367

Query: 252 CVI 254
            VI
Sbjct: 368 QVI 370

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  180 bits (459), Expect = 5e-55
 Identities = 91/258 (35%), Positives = 142/258 (55%), Gaps = 10/258 (3%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
              D T RF    G+ +     + +FSEYTV+  A VVK+D  +P ++ACL+ CGV TG 
Sbjct: 116 QISDGTYRFH-ADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGW 174

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           G+A   A+V  G TVV+ G+G +G+   +GA + GA ++I VD +  K E   +FG T  
Sbjct: 175 GSAVNIADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHA 234

Query: 121 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA--SLVQEAYACCRKGWGKTIVLGVDQ 177
             S     +   Q++ ++T+G GAD     VG      + EA +  RKG G+ +V G+  
Sbjct: 235 FASM----EEAVQLVRELTNGQGADKTIITVGEVDGEHIAEALSATRKG-GRVVVTGLGP 289

Query: 178 PG-SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                + ++ FE+    K L G+LFGG   ++DIP LL+ Y   +L+LD+ +T     ++
Sbjct: 290 MADVDVKVNLFELTLLQKELQGTLFGGANPRADIPRLLELYRAGKLKLDELITRTYTLDQ 349

Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  +  ++ GK +R VI
Sbjct: 350 INEGYQDMLDGKNIRGVI 367

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  174 bits (444), Expect = 1e-52
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 6/252 (2%)

Query: 4   DQTSRFKDLRGETIH-HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 62
           D ++      G  +H HF   SSF+ Y V+   +VVKVD  VP      L CG+ TG GA
Sbjct: 118 DGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGA 177

Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
                    GS++ +FG G++GLA    A++ G T II VD++  + E+ K  G T  +N
Sbjct: 178 VLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVIN 237

Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
            K   ++ +   I ++T GG DY  +  G+ +++++A        G   ++G   PG+++
Sbjct: 238 PK---EEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEV 293

Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           +L   ++L SGK + G + G    +  IP L++ Y   +   DK VT    FE+IN A  
Sbjct: 294 TLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTF-YPFEDINQAIA 352

Query: 243 LLIKGKCLRCVI 254
               GK ++ V+
Sbjct: 353 DSESGKVIKPVL 364

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  145 bits (368), Expect = 1e-41
 Identities = 83/233 (35%), Positives = 118/233 (50%), Gaps = 5/233 (2%)

Query: 23  VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS 82
           + +F+E T++      KVDP   P  A LL CGV  G+GAA  T  V+ G +V + G G 
Sbjct: 128 IGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGG 187

Query: 83  IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG- 141
           +G A   GA L GA++II VD+   K E  + FG T  VNS   G   V + I  +T G 
Sbjct: 188 VGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSS--GTDPV-EAIRALTGGF 244

Query: 142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF 201
           GAD   + VG     ++A+   R   G  +++GV  P   L L   +V   G  L  S +
Sbjct: 245 GADVVIDAVGRPETYKQAFY-ARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWY 303

Query: 202 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 254
           G    + D P+L+  Y+   L LD FVT  +  +++  AFD +  G  LR V+
Sbjct: 304 GDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVV 356

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  125 bits (317), Expect = 3e-34
 Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 9/234 (3%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 85
           F+EY  +     +   P      A  L+  ++T        A V  G TVV+ G G IGL
Sbjct: 123 FAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGL 182

Query: 86  AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GAD 144
                A+L GA+ +I VD   E+ E+ K  G  + V +    +      I+++T G GAD
Sbjct: 183 LAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNP--SEDDAGAEILELTGGRGAD 240

Query: 145 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL 204
              E VG    + +A    R G G  +V+GV   G  + L +  V+     L GSL    
Sbjct: 241 VVIEAVGSPPALDQALEALRPG-GTVVVVGVY-GGEDIPLPAGLVVSKELTLRGSLRPS- 297

Query: 205 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVIWM 256
             + D    L      +++ +K +TH +  ++   A++L    K   ++ V+  
Sbjct: 298 -GREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP 350

Length = 350

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  117 bits (296), Expect = 6e-32
 Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 9/199 (4%)

Query: 17  IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVV 76
           I        F+EY V+   ++V +   +    A LL   ++T   A  R   ++ G TV+
Sbjct: 80  ILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVL 139

Query: 77  IFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIII 136
           + G G +GL  A+ A+  GA R+I  D   EK E+ K  G    ++ K   ++ + + + 
Sbjct: 140 VLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYK---EEDLEEELR 195

Query: 137 DMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKIL 196
               GGAD   + VG    + +A    R G G+ +V+G    G         +L     +
Sbjct: 196 LTGGGGADVVIDAVGGPETLAQALRLLRPG-GRIVVVGGT-SGGPPLDDLRRLLFKELTI 253

Query: 197 MGSLFGGLKAKSDIPILLK 215
           +GS  G  +   D    L 
Sbjct: 254 IGSTGGTRE---DFEEALD 269

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  116 bits (292), Expect = 1e-30
 Identities = 73/253 (28%), Positives = 121/253 (47%), Gaps = 9/253 (3%)

Query: 4   DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 63
           D T+R   L G  ++ + S+   +EY V+    +  +  ++    + +L C   T  GA 
Sbjct: 121 DGTTRLFRLDGGPVYMY-SMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGAL 179

Query: 64  WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 123
              A+V  G TV + G+G +G +  + A+  GA+ II VDV  EK    K  G T  VN+
Sbjct: 180 KHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNA 239

Query: 124 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
               D      I ++T G G D   E +G     + A    R G G+ +V+G+   G+  
Sbjct: 240 AK-ED--AVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATA 295

Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
            +    ++  G  ++GS   G + + D+P L+      +L+ +  VTH+ K EEIN A++
Sbjct: 296 EIPITRLVRRGIKIIGSY--GARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYE 353

Query: 243 LLIKGKC-LRCVI 254
            L KG    R ++
Sbjct: 354 NLRKGLIHGRAIV 366

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  107 bits (270), Expect = 2e-27
 Identities = 67/233 (28%), Positives = 103/233 (44%), Gaps = 6/233 (2%)

Query: 25  SFSEYTVLDI-AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGS 82
            ++E+  L     +V+V   VP   A   +C ++T V AA   A  V  G TVV+ G G 
Sbjct: 130 GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALAT-VLAALDRAGPVGAGDTVVVQGAGP 188

Query: 83  IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG- 141
           +GL     A+L GA R+I +D   E+ E+ + FG    ++     D     I+ D+T G 
Sbjct: 189 LGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGR 248

Query: 142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF 201
           GAD   E  G  + V E     R+G G  +++G   P   + L    ++     ++G   
Sbjct: 249 GADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHN 307

Query: 202 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 254
                       L+R  D+     + VTH    E+IN A +L   G  L+ VI
Sbjct: 308 YDPSHLYRAVRFLERTQDRFP-FAELVTHRYPLEDINEALELAESGTALKVVI 359

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  104 bits (261), Expect = 3e-26
 Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 17/232 (7%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGS 82
           F+EY V+    V K+   +    A L   LSC V            ++ G +V++FG G 
Sbjct: 116 FAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVH-----GLDLLGIKPGDSVLVFGAGP 170

Query: 83  IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGG 142
           IGL +A+  +L GA+R+   +   EK E+ K+ G TE V+      +   +   +    G
Sbjct: 171 IGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVD----PSREDPEAQKEDNPYG 226

Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 202
            D   E  G+   +++A    R+G G  +V GV  P +++S+S FE+      ++GS F 
Sbjct: 227 FDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGS-FI 284

Query: 203 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 254
                     LL+     ++++   V+H +  EE+  A + +  G  L+ V+
Sbjct: 285 NPYTFPRAIALLES---GKIDVKGLVSHRLPLEEVPEALEGMRSGGALKVVV 333

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  103 bits (258), Expect = 9e-26
 Identities = 66/223 (29%), Positives = 99/223 (44%), Gaps = 13/223 (5%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 85
           F+EY V+    +V V   VP  +A + +  V T   A  R   V+ G TV++ GLG +GL
Sbjct: 120 FAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGL 179

Query: 86  AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY 145
              + A+  GA  +I VD+  EK E+ K  G  E +NS    D S          GG D 
Sbjct: 180 NAVQIAKAMGAA-VIAVDIKEEKLELAKELGADEVLNSL---DDSPKDKKAAGLGGGFDV 235

Query: 146 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 205
            F+ VG     ++A    + G G+ +V+G+ +    + LS          ++GS FGG  
Sbjct: 236 IFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDKLTVDLSDLIARE--LRIIGS-FGGT- 290

Query: 206 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
              D+P +L      +L            +EI    + L KGK
Sbjct: 291 -PEDLPEVLDLIAKGKL---DPQVETRPLDEIPEVLERLHKGK 329

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  101 bits (254), Expect = 3e-25
 Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 10/194 (5%)

Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A R A ++ G TV++ G G IGL  A  A+  GA ++I  D+   + E  K+ G    ++
Sbjct: 157 AQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTID 216

Query: 123 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 181
           +    ++ + + + ++TDG GAD      G      +A    RKG G+ +  G    GS 
Sbjct: 217 A---AEEDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGST 272

Query: 182 LSLSSFEVLHSGKILMGSLFGGLKAKS-DIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           +++    ++H  +I   ++ G   A   D    L+     ++++   +TH    E+I  A
Sbjct: 273 VNI-DPNLIHYREI---TITGSYAASPEDYKEALELIASGKIDVKDLITHRFPLEDIEEA 328

Query: 241 FDLLIKGKCLRCVI 254
           F+L   GK L+ VI
Sbjct: 329 FELAADGKSLKIVI 342

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 99.7 bits (249), Expect = 2e-24
 Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 14/235 (5%)

Query: 25  SFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS 82
             +EY  +  A  ++ K+   +P   A +LS  + TG   A   A ++ GSTV + G G 
Sbjct: 120 GQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGP 178

Query: 83  IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG- 141
           +GL    GARL GA RII VD   E+ ++ K  G T+ +N KN     + + I+++T G 
Sbjct: 179 VGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNG---DIVEQILELTGGR 235

Query: 142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF 201
           G D   E VG     ++A    R G G    +GV            E             
Sbjct: 236 GVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYG-KPDPLPLLGEWFGKNLTFKT--- 290

Query: 202 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVI 254
           G +  ++ +P LL    + +++  K +TH    ++I  A+ L       C++ VI
Sbjct: 291 GLVPVRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVI 345

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 97.3 bits (243), Expect = 4e-24
 Identities = 53/230 (23%), Positives = 95/230 (41%), Gaps = 23/230 (10%)

Query: 27  SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 86
           +E  V+    +V +   +PP RA L +   +T +      A   +G  V + GLG +GL 
Sbjct: 55  AERVVVPANLLVPLPDGLPPERAALTALA-ATALNGVRD-AEPRLGERVAVVGLGLVGLL 112

Query: 87  VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC 146
            A+ A+  GA  ++GVD  + + E+ +  G  + V +             ++   GAD  
Sbjct: 113 AAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAAD---------TADEIGGRGADVV 163

Query: 147 FECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG--KILMGSLFGGL 204
            E  G  S ++ A    R   G+ +++G       L L   E  H     I    ++G  
Sbjct: 164 IEASGSPSALETALRLLRDR-GRVVLVGWYGLKP-LLLG--EEFHFKRLPIRSSQVYGIG 219

Query: 205 KAKSDIPILLKRYMDKELEL------DKFVTHEMKFEEINSAFDLLIKGK 248
           +          R +++ L+L      +  +TH + FE+   A+ LL +  
Sbjct: 220 RYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDP 269

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 98.5 bits (246), Expect = 5e-24
 Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 21/230 (9%)

Query: 25  SFSEYT-VLDI-AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS 82
            F+EY  V D  A++  +   +   +A +L   +STG   A   AN+++G TV +FG+G 
Sbjct: 119 VFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGAEL-ANIKLGDTVAVFGIGP 177

Query: 83  IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG- 141
           +GL    GARL GA RII V     + E+ K +G T+ V+ KN     V + I+ +T G 
Sbjct: 178 VGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNG---DVVEQILKLTGGK 234

Query: 142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL--SLSSFEVLHSGKILMGS 199
           G D      G     ++A    + G G    +        L      + V    K + G 
Sbjct: 235 GVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYLPIPREEWGVGMGHKTINGG 293

Query: 200 LFGGLKAKSDIPILLKRYMD----KELELDKFVTH-EMKFEEINSAFDLL 244
           L  G + +      ++R         ++  K +TH    F++I  A  L+
Sbjct: 294 LCPGGRLR------MERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLM 337

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 97.8 bits (244), Expect = 8e-24
 Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 37  VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA 96
           ++ +   +      LL CG+ T    A R   V    TV++ G G +GL     AR  GA
Sbjct: 130 LIPLPDDLSFADGALLLCGIGTA-YHALRRVGVSGRDTVLVVGAGPVGLGALMLARALGA 188

Query: 97  TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLV 156
             +IGVD   E+ E+ K  G    +NS   G   V +I    +  GAD   EC G  +  
Sbjct: 189 EDVIGVDPSPERLELAKALGADFVINS---GQDDVQEIRELTSGAGADVAIECSGNTAAR 245

Query: 157 QEAYACCRKGWGKTIVLGVDQPGSQLSLS-SFEVLHSGKILMGSLFGGLKAKSDIPILLK 215
           + A    R  WG+ +++G    G +L++  S +++   + L+GS +  +    +    L 
Sbjct: 246 RLALEAVRP-WGRLVLVGE---GGELTIEVSNDLIRKQRTLIGSWYFSVPDMEECAEFLA 301

Query: 216 RYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 254
           R+   +LE+D+ VTH    ++   A+ L  +G+  + V 
Sbjct: 302 RH---KLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVF 337

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 98.0 bits (245), Expect = 1e-23
 Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 50/254 (19%)

Query: 35  AHV--VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR 92
           A V   K+   +   +A  LS  + TG  AA   A V+ G TV ++G G +GL  A  A+
Sbjct: 147 ADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAK 205

Query: 93  LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVG 151
           L GA R+I +D + E+ E+ +     E +N +      V + + ++T G G D C + VG
Sbjct: 206 LLGAERVIAIDRVPERLEMARSHLGAETINFEEV--DDVVEALRELTGGRGPDVCIDAVG 263

Query: 152 L---------------------ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL 190
           +                        ++EA    RKG G   ++GV               
Sbjct: 264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKG-GTVSIIGVYGGTVN--------- 313

Query: 191 HSGKILMGSLF--------GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
              K  +G+          G    +  +P LL+     EL+    +TH +  E+   A+ 
Sbjct: 314 ---KFPIGAAMNKGLTLRMGQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYK 370

Query: 243 LLIKGK--CLRCVI 254
           +  K +  C++ V+
Sbjct: 371 IFDKKEDGCIKVVL 384

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 95.7 bits (239), Expect = 3e-23
 Identities = 60/223 (26%), Positives = 110/223 (49%), Gaps = 16/223 (7%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 85
           F+EY V+    ++  +  +  ++A L+   ++ G  A  R A V  G TV++ G G IGL
Sbjct: 117 FAEYIVVPADALLVPE-GLSLDQAALVEP-LAIGAHAVRR-AGVTAGDTVLVVGAGPIGL 173

Query: 86  AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GAD 144
            V + A+  GA R+I VD+  E+ E  +  G  + +N    GD+ V+  + ++TDG GAD
Sbjct: 174 GVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINV---GDEDVAARLRELTDGEGAD 229

Query: 145 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKI-LMGSLFGG 203
              +  G  + ++EA      G G+ +++G+ +         F   H  ++ ++GS    
Sbjct: 230 VVIDATGNPASMEEAVELVAHG-GRVVLVGLSKGPVTFPDPEF---HKKELTILGSR--- 282

Query: 204 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 246
              + D P ++      +++ +  +TH   FE++  AFDL   
Sbjct: 283 NATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEA 325

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 94.5 bits (236), Expect = 1e-22
 Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 19/228 (8%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGS 82
           F+EY V+   HV K+   VP   A L   L+         A R +  + G T ++ G G 
Sbjct: 129 FAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWH-----AVRRSGFKPGDTALVLGAGP 183

Query: 83  IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG- 141
           IGL      +  GA++II  +    + E+ +  G T  ++        V   +  +T G 
Sbjct: 184 IGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVD---VVAEVRKLTGGG 240

Query: 142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF 201
           G D  F+C G+ + +  A    R   G  + + +      +S +  +++   K L GS+ 
Sbjct: 241 GVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAI--WEKPISFNPNDLVLKEKTLTGSI- 296

Query: 202 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI-NSAFDLLIKGK 248
                + D   ++      +++ +  +T  +  E+I    F+ LI  K
Sbjct: 297 --CYTREDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDK 342

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 93.8 bits (234), Expect = 2e-22
 Identities = 59/231 (25%), Positives = 111/231 (48%), Gaps = 19/231 (8%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 85
           F+EY  +   +++K+   V    A ++    +  + A    A + +G TVV+ G G+IGL
Sbjct: 116 FAEYVSVPARNLIKIPDHVDYEEAAMIE-PAAVALHAVRL-AGITLGDTVVVIGAGTIGL 173

Query: 86  AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GAD 144
              +  ++ GA R+I VD+  EK  + +  G  + +N K    + V     ++T+G GAD
Sbjct: 174 LAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVR----ELTEGRGAD 229

Query: 145 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE-VLHSGKILMGS---- 199
              E  G  + +++A A  R G GK +++G+      LS  +FE +L     + GS    
Sbjct: 230 LVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSY 288

Query: 200 --LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
              F G + ++ + +L    +     ++  +TH +  E+  +AF+ L   +
Sbjct: 289 SAPFPGDEWRTALDLLASGKIK----VEPLITHRLPLEDGPAAFERLADRE 335

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 93.0 bits (232), Expect = 4e-22
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 16/224 (7%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG 84
            ++EY V+   +VVK+   +    A  L C   T   A  + ANV+ G  V + G G +G
Sbjct: 121 GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLG 179

Query: 85  LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD 144
               + A+  GA  +I +    EK E+ K+ G    +NS    D    + +       AD
Sbjct: 180 HMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINSS---DSDALEAV----KEIAD 231

Query: 145 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL 204
              + VG  + ++ +    R+G G  +++G+   G    L +F ++     ++GSL G  
Sbjct: 232 AIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTR 289

Query: 205 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
               D+   L      E ++   +   +  +EIN A++ + KGK
Sbjct: 290 A---DLEEALD--FAAEGKIKPEILETIPLDEINEAYERMEKGK 328

Length = 339

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 89.7 bits (223), Expect = 5e-21
 Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 16/234 (6%)

Query: 20  FVSVSSFSEYTVLDIAHVVKVDPTVP--PNRACLLSCGVSTGVGAAWRTANVEVGSTVVI 77
            +S  +F+EY + D  H V +   +         L C ++      +R   +  G TV +
Sbjct: 81  GLSGGAFAEYDLADADHAVPLPSLLDGQAFPGEPLGCALN-----VFRRGWIRAGKTVAV 135

Query: 78  FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID 137
            G G IGL   + A   GA R+I +D    +  + +  G TE V   +   +++ + + +
Sbjct: 136 IGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS---EAIVERVRE 192

Query: 138 MTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG-SQLSLSSFEVLHSGKI 195
           +T G GAD   E VG    +  A     +  G+ ++ G  Q G   +   +      G  
Sbjct: 193 LTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQDGPRPVPFQT--WNWKGID 249

Query: 196 LMGSLFGGLKAK-SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
           L+ ++    +     +   +K   D  L+L   +THE   EE+  AF+   +  
Sbjct: 250 LINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRP 303

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 84.7 bits (210), Expect = 9e-21
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 83  IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG- 141
           +GLA  + A+  GA R+I VD   EK E+ K  G    +N +   D+   + + ++T G 
Sbjct: 2   VGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYR---DEDFVERVRELTGGR 58

Query: 142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF 201
           G D   +CVG  + +++A    R G    +V         +     ++L     ++GSL 
Sbjct: 59  GVDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGA--PVPFPLRDLLLKELTILGSLG 116

Query: 202 GGLK 205
           GG +
Sbjct: 117 GGRE 120

Length = 131

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 88.3 bits (220), Expect = 2e-20
 Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 21/206 (10%)

Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           S GV A  R A V  G TV++FG G IGL  A  A+  GAT+++  D+   + E  K  G
Sbjct: 149 SVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELG 207

Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEA-YACCRKGWGKTIVL- 173
            T  VN +       ++ I ++  G G D   EC G  S +Q A YA    G   T+VL 
Sbjct: 208 ATHTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGG---TVVLV 264

Query: 174 GVDQPGSQL---SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH 230
           G+ +P   L   + S  E+          + G  +  +  P  ++     ++++   +TH
Sbjct: 265 GMGKPEVTLPLSAASLREI---------DIRGVFRYANTYPTAIELLASGKVDVKPLITH 315

Query: 231 EMKFEEINSAFDLLIKGK--CLRCVI 254
               E+   AF+   KGK   ++ VI
Sbjct: 316 RFPLEDAVEAFETAAKGKKGVIKVVI 341

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 82.3 bits (204), Expect = 3e-18
 Identities = 64/210 (30%), Positives = 94/210 (44%), Gaps = 17/210 (8%)

Query: 37  VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA 96
           + K+   V    A +LS  + TG         V+ G TV I G G +GLA    A+L   
Sbjct: 132 LYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSP 191

Query: 97  TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL 155
           ++II VD+   + E+ K+ G T  VNS         + ++++TDG G D   E VG    
Sbjct: 192 SKIIMVDLDDNRLEVAKKLGATHTVNSA---KGDAIEQVLELTDGRGVDVVIEAVG---- 244

Query: 156 VQEAYACCRK--GWGKTI-VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPI 212
           +   +  C++    G  I  +GV      L L   E L    I + +   GL   +  P+
Sbjct: 245 IPATFELCQELVAPGGHIANVGVHGKPVDLHL---EKLWIKNITITT---GLVDTNTTPM 298

Query: 213 LLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           LLK     +L+  K VTH  K  EI  A+D
Sbjct: 299 LLKLVSSGKLDPSKLVTHRFKLSEIEKAYD 328

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 81.2 bits (201), Expect = 8e-18
 Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 18/212 (8%)

Query: 37  VVKVDPTVPPNRACL------LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEG 90
           +VKV P  P +   L      LS  + TG  AA  +A V  GSTVV+ G G++GL     
Sbjct: 130 LVKV-PGSPSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLA 187

Query: 91  ARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFEC 149
           A+  GA RII +    ++  + + FG T+ V  +  G+++V++ + ++T G GAD   EC
Sbjct: 188 AKRLGAERIIAMSRHEDRQALAREFGATDIVAER--GEEAVAR-VRELTGGVGADAVLEC 244

Query: 150 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSD 209
           VG    +++A A  R G G+   +GV  P   + L   E+      L G   G    +  
Sbjct: 245 VGTQESMEQAIAIARPG-GRVGYVGV--PHGGVELDVRELFFRNVGLAG---GPAPVRRY 298

Query: 210 IPILLKRYMDKELELDKFVTHEMKFEEINSAF 241
           +P LL   +   +   +     +  +E+   +
Sbjct: 299 LPELLDDVLAGRINPGRVFDLTLPLDEVAEGY 330

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 80.7 bits (200), Expect = 1e-17
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 5/149 (3%)

Query: 20  FVSVSSFSEYTVLDIAHV--VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI 77
           F    SF+EY  +  A V  V++   V    A  L C  +T   A    A V+ G  V +
Sbjct: 112 FTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAV 171

Query: 78  FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID 137
            G G +GL+    A   GA R+I VD+  +K E+ +  G    VN+     + V+  + D
Sbjct: 172 HGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNAS--EVEDVAAAVRD 228

Query: 138 MTDGGADYCFECVGLASLVQEAYACCRKG 166
           +T GGA    + +G+    + + A  RK 
Sbjct: 229 LTGGGAHVSVDALGIPETCRNSVASLRKR 257

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 57/233 (24%), Positives = 91/233 (39%), Gaps = 18/233 (7%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGST-VVIFGLGSIG 84
           ++EY ++  +  +     + P  A  L+C   T   A  +     V    VVI G G +G
Sbjct: 130 YAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAV-KKLMPLVADEPVVIIGAGGLG 188

Query: 85  LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD 144
           L      +  G   II VD+   K E  K  G    VN  +       + II    GG D
Sbjct: 189 LMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAA---KRIIKAAGGGVD 245

Query: 145 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL 204
              + V  ++    A+    KG GK +++G+   G + +L    +      + GS  G L
Sbjct: 246 AVIDFVNNSATASLAFDILAKG-GKLVLVGL--FGGEATLPLPLLPLRALTIQGSYVGSL 302

Query: 205 KAKSDIPILLKRYMD--KELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI 254
           +        L+  +   K  +L      E    ++N A D L  GK + R V+
Sbjct: 303 EE-------LRELVALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVL 348

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 78.8 bits (195), Expect = 4e-17
 Identities = 62/219 (28%), Positives = 94/219 (42%), Gaps = 11/219 (5%)

Query: 37  VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA 96
           ++K+   +    A LL   + TG   A + A V  G TV + G G +GL     A++ GA
Sbjct: 134 LLKLPDGLSDEAALLLGDILPTGYFGA-KRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGA 192

Query: 97  TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL 155
            R+  VD + E+ E     G  E +N +   D    + + + T+G GAD   E VG A+ 
Sbjct: 193 ARVFAVDPVPERLERAAALG-AEPINFE---DAEPVERVREATEGRGADVVLEAVGGAAA 248

Query: 156 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLK 215
           +  A+   R   G    +GV     +      +     K L    FG    +S  P LL 
Sbjct: 249 LDLAFDLVRP-GGVISSVGVHTAE-EFPFPGLDAY--NKNLTLR-FGRCPVRSLFPELLP 303

Query: 216 RYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 254
                 L+L+  + H M  EE   A+ L  K K L+ V+
Sbjct: 304 LLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVL 342

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 22/230 (9%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE--VGSTVVIFGLGSI 83
           F+EY V+   ++ K D  +PP  A      +   +G A  T       G +V+I G G I
Sbjct: 121 FAEYVVVPEENLWKNDKDIPPEIA-----SIQEPLGNAVHTVLAGDVSGKSVLITGCGPI 175

Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGA 143
           GL     A+  GA+ +I  D    + E+ K+ G    +N +   ++ V ++       G 
Sbjct: 176 GLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPR---EEDVVEVKSVTDGTGV 232

Query: 144 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG----S 199
           D   E  G    +++       G G+  +LG+      + L++  V+  G  + G     
Sbjct: 233 DVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPGPVDIDLNN-LVIFKGLTVQGITGRK 290

Query: 200 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC 249
           +F      S    LLK     +++L   +TH++  E+   AF+L+  GKC
Sbjct: 291 MFETWYQVSA---LLK---SGKVDLSPVITHKLPLEDFEEAFELMRSGKC 334

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 66.8 bits (164), Expect = 7e-13
 Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 23/235 (9%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANV-EVGSTVVIFG---LG 81
           F+EY ++    +VK+   + P  A  L+    T   A  +     + GSTVV+ G   LG
Sbjct: 121 FAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLG 180

Query: 82  SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG 141
            I + +    R      +I VD   E  ++ +R G    +N        V + + ++T G
Sbjct: 181 HIAVQIL---RALTPATVIAVDRSEEALKLAERLGADHVLN----ASDDVVEEVRELTGG 233

Query: 142 -GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL 200
            GAD   + VG    +  A     KG G+ +++G    G    L + +++ +   ++GSL
Sbjct: 234 RGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGY---GGHGRLPTSDLVPTEISVIGSL 289

Query: 201 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI 254
           +G     +++  ++      ++   K    +   E+ N A D L +G+   R V+
Sbjct: 290 WGTR---AELVEVVALAESGKV---KVEITKFPLEDANEALDRLREGRVTGRAVL 338

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 54/245 (22%), Positives = 90/245 (36%), Gaps = 32/245 (13%)

Query: 24  SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST---------GVGAAWRTAN-VEVGS 73
            +F EY V D     K+   +    A  L  G+ T         G+       +    G 
Sbjct: 97  GAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGK 156

Query: 74  TVVIFGLGS--IGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGVTEFVNSKNCGDKS 130
            V+I+G GS  +G    + A+L G  ++I     S K F++ K  G     +     D  
Sbjct: 157 PVLIWG-GSSSVGTLAIQLAKLAGY-KVIT--TASPKNFDLVKSLGADAVFDYH---DPD 209

Query: 131 VSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV--LGVDQPGSQLSLSSFE 188
           V + I   T G   Y  +C+      Q       +  G  +V  L V +          +
Sbjct: 210 VVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEET-----EPRK 264

Query: 189 VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-----FEEINSAFDL 243
            +    +L  ++FG +    +   +  +Y+ + LE  K   H ++      E +    DL
Sbjct: 265 GVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDL 324

Query: 244 LIKGK 248
           L KGK
Sbjct: 325 LRKGK 329

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 35  AHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 91
           A V KV   +PP  A L   L+C +     A  R AN++    VV+ G G +GL +   A
Sbjct: 140 AIVHKVPDDIPPEDAILIEPLACALH----AVDR-ANIKFDDVVVLAGAGPLGLGMIGAA 194

Query: 92  RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV 150
           RL    ++I +D+  E+  + ++FG    +N     +  V + I ++T G G D   E  
Sbjct: 195 RLKNPKKLIVLDLKDERLALARKFGADVVLNPP---EVDVVEKIKELTGGYGCDIYIEAT 251

Query: 151 GLASLVQEAYACCRK 165
           G  S V++     RK
Sbjct: 252 GHPSAVEQGLNMIRK 266

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 17/179 (9%)

Query: 72  GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSV 131
           G+ VV++G G IGLA    A+  GA+++I  ++  E+  + K  G     N     D   
Sbjct: 204 GAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLS 263

Query: 132 SQIIIDMTDG-GADYCFECVGLASLV----QEAYACCRKGWGKTIVLGVDQPGSQLSLSS 186
            + ++++T G GAD   E  G         +++ A      GK + +G  +  + + L  
Sbjct: 264 GEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN----GKIVYIG--RAATTVPL-H 316

Query: 187 FEVLHSGKILMGSLFG--GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 243
            EVL   +     + G  G       P ++K     ++++ K +T     E I  A   
Sbjct: 317 LEVLQVRR---AQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKA 372

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 10/155 (6%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLG 81
            ++EY +L  A +++V   +    A L   L+ G+      A R A +  G   ++ G G
Sbjct: 117 GYAEYMLLSEALLLRVPDGLSMEDAALTEPLAVGLH-----AVRRARLTPGEVALVIGCG 171

Query: 82  SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG 141
            IGLAV    +  G   I+  D   E+  +    G    V+       +     +    G
Sbjct: 172 PIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGG 231

Query: 142 GA-DYCFECVGLASLVQEAYACCRKGWGKTIVLGV 175
                 FECVG   L+Q+       G G+ +V+GV
Sbjct: 232 PKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGV 265

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 35/236 (14%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG----L 80
           +F+EY + D  +V  +   +   +A  L C   T V  A + A ++ G  VVI G    L
Sbjct: 120 TFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVT-VYKALKKAGLKPGDWVVISGAGGGL 178

Query: 81  GSIGL--AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM 138
           G +G+  A A G R      +I +DV  EK E+ K  G   FV+ K        + + ++
Sbjct: 179 GHLGVQYAKAMGLR------VIAIDVGDEKLELAKELGADAFVDFK---KSDDVEAVKEL 229

Query: 139 TDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM 197
           T G GA         A+  ++A    R G G  + +G+  PG  + L  F+++  G  ++
Sbjct: 230 TGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGL-PPGGFIPLDPFDLVLRGITIV 287

Query: 198 GSLFGGLKAKSDIPILLKRYMDKELEL---DKFVTH--EMKFEEINSAFDLLIKGK 248
           GSL G  +   D        + + LE     K   H   +  E++N  F+ + +GK
Sbjct: 288 GSLVGTRQ---D--------LQEALEFAARGKVKPHIQVVPLEDLNEVFEKMEEGK 332

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 14/155 (9%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLG 81
            F+EY ++    + ++   +    A L   L+  V     A    + +  G TVV+FG G
Sbjct: 119 GFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVH----AVAERSGIRPGDTVVVFGPG 174

Query: 82  SIGLAVAEGARLCGATRII-GVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD 140
            IGL  A+ A+L GAT ++ G +    + ++ K  G      + N G++ +++++ ++TD
Sbjct: 175 PIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGAD----AVNGGEEDLAELVNEITD 230

Query: 141 G-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG 174
           G GAD   EC G    +++A    RKG G+ + +G
Sbjct: 231 GDGADVVIECSGAVPALEQALELLRKG-GRIVQVG 264

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 51/222 (22%), Positives = 83/222 (37%), Gaps = 22/222 (9%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 85
           F EY V+D +  V +   +   RA L +  ++  + A  R  ++  G  V++ G G IG 
Sbjct: 122 FREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGA 179

Query: 86  AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY 145
            V   AR  GA  I+  D+      + +  G  E VN       + +        G  D 
Sbjct: 180 LVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADK-----GDFDV 234

Query: 146 CFECVGLASLVQEAYACCRKGWGKTIV----LGVDQPGSQLSLSSFEVLHSGKILMGSLF 201
            FE  G  + +  A    R   G T+V    LG   P    +L + E+          L 
Sbjct: 235 VFEASGAPAALASALRVVRP--GGTVVQVGMLGGPVPLPLNALVAKEL---------DLR 283

Query: 202 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 243
           G  +   +    ++      +++   +T     EE   AF L
Sbjct: 284 GSFRFDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFAL 325

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-LGSI 83
            ++EY V+    +V +   +    A  L     T   A +  A ++ G TV++ G  G +
Sbjct: 96  GYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGV 155

Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           G A  + A+  GAT +  V   SEK E+ K  G    +N +   ++   + + ++T G G
Sbjct: 156 GSAAIQLAKALGATVVAVVSS-SEKLELLKELGADHVINYR---EEDFVEQVRELTGGKG 211

Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 202
            D   + VG       + A    G G+ + +G    G  + L+   +L     L G   G
Sbjct: 212 VDVVLDTVG-GDTFAASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLG 269

Query: 203 GLKAKSDIPILLKRYMDKELELDKF---VTHEMKFEEINSAFDLLIKGK 248
               ++    L +  +   L   K    +       E  +A   L+  +
Sbjct: 270 SRDPEALAEALAE--LFDLLASGKLKPVIDRVYPLAEAPAAAAHLLLER 316

Length = 326

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 25/234 (10%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI-FGLGSIG 84
           F+EY  +    +VK+   V    A L +C V T V A  + A V+ G TV++    G +G
Sbjct: 118 FAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KRAGVKKGDTVLVTGAGGGVG 176

Query: 85  LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD 144
           +   + A+  GA R+I V    EK +I K  G    ++     +            GGAD
Sbjct: 177 IHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGSKFSEDVKKL-------GGAD 228

Query: 145 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG--SLFG 202
              E VG  ++ +   +   KG G+ +++G   P           L  G +++    + G
Sbjct: 229 VVIELVGSPTIEESLRS-LNKG-GRLVLIGNVTP-------DPAPLRPGLLILKEIRIIG 279

Query: 203 GLKA-KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI 254
            + A K+D+   LK  + KE ++   +   +  E+IN A + L  GK + R V+
Sbjct: 280 SISATKADVEEALK--LVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVL 331

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 58  TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 117
           TG       A V+ G TV +FG G +GL  A  A L GA+R+  VD + E+ ++ +  G 
Sbjct: 164 TGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA 222

Query: 118 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG 151
              ++     D    + I+ +  GG D   +CVG
Sbjct: 223 -IPIDFS---DGDPVEQILGLEPGGVDRAVDCVG 252

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 41/240 (17%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA---NVEVGSTVVIFGLG 81
           +F+EY V+   +V K+   +P + A +         G A  TA   ++ VG  V+I G G
Sbjct: 120 AFAEYLVIPAFNVWKIPDDIPDDLAAIFD-----PFGNAVHTALSFDL-VGEDVLITGAG 173

Query: 82  SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG 141
            IG+  A  A+  GA  ++  DV   + E+ ++ G T  VN      + +  ++ ++   
Sbjct: 174 PIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNV---AKEDLRDVMAELGMT 230

Query: 142 -GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL 200
            G D   E  G  S  ++       G G+  +LG+  P   +++   +V+  G  + G +
Sbjct: 231 EGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGI--PPGDMAIDWNKVIFKGLTIKG-I 286

Query: 201 FGGLKAKSDIPILLKRYM-----------DKELELDKFVTHEMKFEEINSAFDLLIKGKC 249
           +G             R M              L+L   +TH    ++    F+ +  G+ 
Sbjct: 287 YG-------------REMFETWYKMSALLQSGLDLSPIITHRFPIDDFQKGFEAMRSGQS 333

Length = 341

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 59/200 (29%), Positives = 91/200 (45%), Gaps = 20/200 (10%)

Query: 56  VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 115
           +S GV A  R AN+   + V++ G G IGL     AR  GA RI+ VDV  E+  + K+ 
Sbjct: 167 LSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL 225

Query: 116 GVTEFVN-SKNCGD--KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 172
           G  E V  S N  D    V +I   M  GG D  F+CVG    +  A    R G GK  +
Sbjct: 226 GADEIVLVSTNIEDVESEVEEIQKAMG-GGIDVSFDCVGFNKTMSTALEATRAG-GKVCL 283

Query: 173 LGVDQPGSQLSLSSF---EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT 229
           +G+      + L+     EV          + G  + ++  P+ L+     ++++   +T
Sbjct: 284 VGMGHNEMTVPLTPAAAREV---------DVVGVFRYRNTWPLCLEFLRSGKIDVKPLIT 334

Query: 230 HEMKF--EEINSAFDLLIKG 247
           H   F  +E+  AF+   +G
Sbjct: 335 HRFGFSQKEVEEAFETSARG 354

Length = 364

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 57.9 bits (140), Expect = 7e-10
 Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 31/240 (12%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGS 82
           F+EY V+   ++ K   ++PP  A +   L   V T +      A    G +V++ G G 
Sbjct: 119 FAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL------AGPISGKSVLVTGAGP 172

Query: 83  IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG- 141
           IGL     A+  GA  +I  D    + E+ K+ G T  VN      + V + + D+TDG 
Sbjct: 173 IGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPF---KEDVVKEVADLTDGE 229

Query: 142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF 201
           G D   E  G    +++       G G+  +LG+  P  ++++       + K++   L 
Sbjct: 230 GVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGL--PPGKVTID-----FTNKVIFKGLT 281

Query: 202 -GGLKAKS------DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 254
             G+  +        +  L++      L+LD  +TH+ KF++    F+L+  G+  + ++
Sbjct: 282 IYGITGRHMFETWYTVSRLIQSGK---LDLDPIITHKFKFDKFEKGFELMRSGQTGKVIL 338

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 51/238 (21%), Positives = 91/238 (38%), Gaps = 35/238 (14%)

Query: 20  FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG 79
           + +   ++EY V D  + V +   +P  +A  L C   T V +A R A    G  V + G
Sbjct: 112 YTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGIT-VYSALRDAGPRPGERVAVLG 170

Query: 80  LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT 139
           +G +G    + AR  G    + +    +K E+ ++ G  E V+S    D           
Sbjct: 171 IGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGAELD-------EQAA 222

Query: 140 DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS 199
            GGAD     V   +  + A    R+G G+ +++G+       S   F ++   + + GS
Sbjct: 223 AGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLP-ESPPFSPDIFPLIMKRQSIAGS 280

Query: 200 LFGGLK---------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
             GG           A+  +               K +      ++ N A++ + KG 
Sbjct: 281 THGGRADLQEALDFAAEGKV---------------KPMIETFPLDQANEAYERMEKGD 323

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 55.6 bits (135), Expect = 5e-09
 Identities = 56/248 (22%), Positives = 88/248 (35%), Gaps = 53/248 (21%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG 84
            ++++ V+D   V K+   +    A  L C   T V +  +   V  G  V + G+G +G
Sbjct: 124 GYADHIVVDERFVFKIPEGLDSAAAAPLLCAGIT-VYSPLKRNGVGPGKRVGVVGIGGLG 182

Query: 85  -----LAVAEGARLCGATRIIGVDVIS---EKFEIGKRFGVTEFVNSKNCGD-KSVSQ-- 133
                 A A GA          V   S    K E   + G  EF+ +K+    K  +   
Sbjct: 183 HLAVKFAKALGAE---------VTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSL 233

Query: 134 -IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS 192
            +IID      D             + Y    K  G  +++G   P   L +  F ++  
Sbjct: 234 DLIIDTVSASHDL------------DPYLSLLKPGGTLVLVGA--PEEPLPVPPFPLIFG 279

Query: 193 GKILMGSLFGGLKAKSDIPILLKRYMDKELELD-----KFVTHEMKFEEINSAFDLLIKG 247
            K + GSL GG K              + L+       K     +  + IN A + L KG
Sbjct: 280 RKSVAGSLIGGRKE-----------TQEMLDFAAEHGIKPWVEVIPMDGINEALERLEKG 328

Query: 248 KCL-RCVI 254
               R V+
Sbjct: 329 DVRYRFVL 336

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 9/162 (5%)

Query: 25  SFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 83
            ++E+  L     +V V   +P   A    C  +T V AA   A    G  V++ G G +
Sbjct: 74  GYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATAT-VMAALEAAGDLKGRRVLVVGAGML 132

Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           GL  A  A   GA R++  D   ++ E+   FG T     +   ++        + +G G
Sbjct: 133 GLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGG-----LQNGRG 187

Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 184
            D   E  G  + V+        G G  ++ G   PG  ++L
Sbjct: 188 VDVALEFSGATAAVRACLESLDVG-GTAVLAGSVFPGGPVAL 228

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 19/177 (10%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 85
            +EY V+   ++  +   +P      +   ++ G+ A       E G  V+I G G+IGL
Sbjct: 117 NAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAFHLAQGCE-GKNVIIIGAGTIGL 174

Query: 86  AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY 145
              + A   GA  +  +D+ SEK  + K  G  +  NS+            +M+      
Sbjct: 175 LAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSR------------EMSAPQIQS 222

Query: 146 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 202
               +    L+ E       G  +T+ L ++  G +  L+    LH    L  + FG
Sbjct: 223 VLRELRFDQLILET-----AGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFG 274

Length = 347

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 18/224 (8%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIG 84
           F+EY  + +  +VKV P V    A ++ C          R A V+ G TV++ G  G +G
Sbjct: 118 FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-RRAGVKKGETVLVTGAGGGVG 176

Query: 85  LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD 144
           +   + A+  GA ++I V     K +I  ++   ++V   +   + V +I      GGAD
Sbjct: 177 IHAIQVAKALGA-KVIAVTSSESKAKIVSKYA--DYVIVGSKFSEEVKKI------GGAD 227

Query: 145 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL 204
              E VG  +L +E+      G GK I +G   P    SL    ++     ++G +    
Sbjct: 228 IVIETVGTPTL-EESLRSLNMG-GKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISAT- 284

Query: 205 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
             K D+   LK  +  E ++   +  E+   EI+ A + L    
Sbjct: 285 --KRDVEEALK--LVAEGKIKPVIGAEVSLSEIDKALEELKDKS 324

Length = 334

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 7/129 (5%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSI 83
           SF+EYTV+D   V+ +  ++    A  L C   T   A ++   +E G T++I G  G +
Sbjct: 95  SFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGV 154

Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           G    + A+  G  R+I        FE  K  G    ++     D+ V + I ++T G G
Sbjct: 155 GSFAVQLAKRAGL-RVI-TTCSKRNFEYVKSLGADHVIDYN---DEDVCERIKEITGGRG 209

Query: 143 ADYCFECVG 151
            D   + VG
Sbjct: 210 VDAVLDTVG 218

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 39/235 (16%)

Query: 27  SEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG- 84
           +E  ++   + VKV   + P +A  ++C GV+T    A + + ++ G  + I+G G +G 
Sbjct: 119 AEQCIVTADYAVKVPEGLDPAQASSITCAGVTTY--KAIKVSGIKPGQWIAIYGAGGLGN 176

Query: 85  LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD 144
           LA+     +  A ++I VD+  +K  + K  G    +NSK   D      II    GGA 
Sbjct: 177 LALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSKRVED---VAKIIQEKTGGAH 232

Query: 145 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG-- 202
                    +   +A    R G G+ + +G+  P   + LS   ++  G  ++GSL G  
Sbjct: 233 AAVVTAVAKAAFNQAVDAVRAG-GRVVAVGL--PPESMDLSIPRLVLDGIEVVGSLVGTR 289

Query: 203 ---------GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
                    G + K  +P +  R                  E+IN  FD + +GK
Sbjct: 290 QDLEEAFQFGAEGKV-VPKVQLR----------------PLEDINDIFDEMEQGK 327

Length = 338

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSI 83
            F+E  V+  A V  +   +    A  L     T   A  R A ++ G TV++ G  G +
Sbjct: 93  GFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGV 152

Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           GLA  + A+  GA R+I      EK  + +  G    ++     D  + + +  +T G G
Sbjct: 153 GLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDY---RDPDLRERVKALTGGRG 208

Query: 143 ADYCFECVG 151
            D  ++ VG
Sbjct: 209 VDVVYDPVG 217

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 66  TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           TA V  GSTV I G G +GLA A  A+L GA  +I  D+   +    + FG
Sbjct: 180 TAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFG 230

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 17/182 (9%)

Query: 27  SEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWR----TANVEVGSTVVIFGLG 81
           +EY VL    +V+    +    A  L C G++     AW        ++ G TV++ G G
Sbjct: 116 AEYVVLPEEGLVRAPDHLSFEEAATLPCAGLT-----AWNALFGLGPLKPGDTVLVQGTG 170

Query: 82  SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG 141
            + L   + A+  GA R+I      EK E  K  G    +N +   D    + ++ +T G
Sbjct: 171 GVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRTTPD--WGEEVLKLTGG 227

Query: 142 -GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL 200
            G D+  E  G  +L Q +      G G   ++G    G +  +    +L  G  L G  
Sbjct: 228 RGVDHVVEVGGPGTLAQ-SIKAVAPG-GVISLIGF-LSGFEAPVLLLPLLTKGATLRGIA 284

Query: 201 FG 202
            G
Sbjct: 285 VG 286

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 21  VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVI 77
           V VS + EY + D   + K+DP+  P  A L   G+  G+ A +        + G TVV+
Sbjct: 98  VGVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM-PGLTAYFGLLDIGQPKAGETVVV 156

Query: 78  FGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTEFVNSKNCGDKSVSQII 135
               G++G  V + A+L G  R++G+   +EK +      G    ++ K    +  +Q +
Sbjct: 157 SAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYK---AEDFAQAL 212

Query: 136 IDMTDGGADYCFECVG 151
            +    G D  FE VG
Sbjct: 213 KEACPKGIDVYFENVG 228

Length = 340

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 43/183 (23%), Positives = 63/183 (34%), Gaps = 29/183 (15%)

Query: 74  TVVIFGLGSIGL-----AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD 128
             ++ G G IGL         G  +    R    D    K +I +  G T +VNS     
Sbjct: 175 RALVLGAGPIGLLAALLLRLRGFEVYVLNR---RDPPDPKADIVEELGAT-YVNSSKTPV 230

Query: 129 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE 188
             V         G  D   E  G+  L  EA        G  I+ GV   G +  +   E
Sbjct: 231 AEVK------LVGEFDLIIEATGVPPLAFEALPALAPN-GVVILFGVPGGGREFEVDGGE 283

Query: 189 -----VLHSGKILMGSLFGGLK----AKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 239
                VL + K L+GS+    +    A  D+     R+      L++ +T  +  EE   
Sbjct: 284 LNRDLVLGN-KALVGSVNANKRHFEQAVEDLAQWKYRWPGV---LERLITRRVPLEEFAE 339

Query: 240 AFD 242
           A  
Sbjct: 340 ALT 342

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 32/213 (15%)

Query: 56  VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 115
           V+T   AA + A ++ G  V++ G G +G  + + A+  GA  ++ +D+  EK E+ K F
Sbjct: 152 VTTPYQAAVQ-AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGF 209

Query: 116 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYC------------FECVGLASLVQEAYACC 163
           G    +N K+   + V ++I         +             FEC G     + A +  
Sbjct: 210 GADLTLNPKDKSAREVKKLI-------KAFAKARGLRSTGWKIFECSGSKPGQESALSLL 262

Query: 164 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDI-PILLKRYMDKEL 222
             G G  +V+G     ++  LS+    H+  +      G      D  P  L   +D ++
Sbjct: 263 SHG-GTLVVVGYTMAKTEYRLSNLMAFHARAL------GNWGCPPDRYPAALDLVLDGKI 315

Query: 223 ELDKFV-THEMKFEEINSAFDLLIKGKCLRCVI 254
           +L  FV    +  ++I   F      K  R  I
Sbjct: 316 QLGPFVERRPL--DQIEHVFAAAHHHKLKRRAI 346

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 43/159 (27%), Positives = 58/159 (36%), Gaps = 17/159 (10%)

Query: 13  RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW----RTAN 68
            G+ +     V   +EY  LD  ++V V   V    A    C V   V  A+    R A 
Sbjct: 81  VGDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEA---VCLVLNYV-TAYQMLHRAAK 136

Query: 69  VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 127
           V  G  V+I G  G +G A+ E A L GA  + G           +  G T         
Sbjct: 137 VLTGQRVLIHGASGGVGQALLELALLAGAE-VYGTAS-ERNHAALRELGATPIDYR---- 190

Query: 128 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 166
            K     ++  T GG D  F+ VG  S  +   A    G
Sbjct: 191 TKDWLPAML--TPGGVDVVFDGVGGESYEESYAALAPGG 227

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 72  GSTVVIFGLGSIGLAVAEGARLCGATRIIGV 102
           G TV+I GLG IG  +A  A+  G  R+IGV
Sbjct: 134 GKTVLIVGLGDIGREIARRAKAFGM-RVIGV 163

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG- 84
           ++EY V D      +        A  L C    G  A  + A ++ G  + ++G G+   
Sbjct: 123 YAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRA-LKLAGLKPGQRLGLYGFGASAH 181

Query: 85  ----LAVAEGARLCGATR 98
               +A  +GA +   TR
Sbjct: 182 LALQIARYQGAEVFAFTR 199

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 41/225 (18%), Positives = 85/225 (37%), Gaps = 26/225 (11%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV--GSTVVIFGLGSI 83
           FSEY V+   +  ++   +    A +    V     AA  T           +I+G G +
Sbjct: 117 FSEYAVVPAKNAHRIPDAIADQYAVM----VEPFTIAANVTGRTGPTEQDVALIYGAGPV 172

Query: 84  GLAVAEG-ARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQII----IDM 138
           GL + +    +     +I  D I E+  + K  G    +N+     + + + +    I  
Sbjct: 173 GLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINN---AQEPLGEALEEKGIKP 229

Query: 139 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG 198
           T        +     S+++EA         + +++G     S++         +GK L  
Sbjct: 230 T-----LIIDAACHPSILEEAVTLASPA-ARIVLMGFSSEPSEIVQQGI----TGKEL-- 277

Query: 199 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 243
           S+F      +  P+++       ++ +K +TH   F+ +  A +L
Sbjct: 278 SIFSSRLNANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIEL 322

Length = 339

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 34/232 (14%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG 84
           ++EY +     + ++   +    A  L C GV+T    A R +  + G  V + G+G +G
Sbjct: 119 YAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTF--NALRNSGAKPGDLVAVQGIGGLG 176

Query: 85  -LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGA 143
            LAV + A   G  R + +   S+K ++ ++ G   ++++     + V++ + ++  GGA
Sbjct: 177 HLAV-QYAAKMG-FRTVAISRGSDKADLARKLGAHHYIDTS---KEDVAEALQEL--GGA 229

Query: 144 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG 203
                    A  +           GK ++LG    G  +++S  +++   K + G   G 
Sbjct: 230 KLILATAPNAKAISALVGGLAPR-GKLLILGAA--GEPVAVSPLQLIMGRKSIHGWPSG- 285

Query: 204 LKAKSDIPILLKRYMDKELELDKFVTH-------EMKFEEINSAFDLLIKGK 248
                         +D E  L     H           E+ N A+D ++ GK
Sbjct: 286 ------------TALDSEDTLKFSALHGVRPMVETFPLEKANEAYDRMMSGK 325

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 7/111 (6%)

Query: 21  VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL 80
           VS   ++EY V+   ++ K+  ++    A  L     T   A  +TA +  G TVV+FG 
Sbjct: 113 VSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL-KTAGLGPGETVVVFGA 171

Query: 81  -GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS 130
            G+ G+   + A++ GA  I     +S K +  K FG  E V+     +K 
Sbjct: 172 SGNTGIFAVQLAKMMGAEVI----AVSRK-DWLKEFGADEVVDYDEVEEKV 217

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 2/100 (2%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 85
           F+ Y V+D A  +              +  ++  + AA +  ++  G  V + G+G IG 
Sbjct: 126 FTRYKVVDTAQCIPYPEKADEKVMAF-AEPLAVAIHAAHQAGDL-QGKRVFVSGVGPIGC 183

Query: 86  AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 125
            +    +  GA  I+  DV      + +  G  + VN +N
Sbjct: 184 LIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN 223

Length = 343

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 32/145 (22%)

Query: 25  SFSEYTVLD---IAHVVKVDPTVPPNRACLLSCGVSTGVGAAW----RTANVEVGSTVVI 77
           S +EY V+D   +A         P N +   +  +      AW      A V+ G TV+I
Sbjct: 98  SLAEYAVVDARLLALK-------PANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLI 150

Query: 78  F----GLGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSV 131
                G+G +   LA A GAR+  AT        SEK    +  G    +  +     +V
Sbjct: 151 HGGAGGVGHVAVQLAKAAGARVY-AT------ASSEKAAFARSLGADPIIYYRE----TV 199

Query: 132 SQIIIDMTDG-GADYCFECVGLASL 155
            + + + T G G D  F+ VG  +L
Sbjct: 200 VEYVAEHTGGRGFDVVFDTVGGETL 224

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 40/234 (17%), Positives = 78/234 (33%), Gaps = 39/234 (16%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT----ANVEVGSTVVIFG- 79
           +++EY V+    +      +    A      +      AW+       ++ G TV+I G 
Sbjct: 98  AYAEYVVVPADELALKPANLSFEEA----AALPLAGLTAWQALFELGGLKAGQTVLIHGA 153

Query: 80  LGSIG-----LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQI 134
            G +G     LA A GAR+            +   +  +  G  E ++      +  +  
Sbjct: 154 AGGVGSFAVQLAKARGARVIATAS-------AANADFLRSLGADEVIDYTKGDFERAAAP 206

Query: 135 IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK 194
                 GG D   + VG  +L   + A  + G G+  ++ +  P      +    + +G 
Sbjct: 207 ------GGVDAVLDTVGGETL-ARSLALVKPG-GR--LVSIAGPPPAEQAAKRRGVRAGF 256

Query: 195 ILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
           + +      L         L   ++   +L   V      E+   A + L  G 
Sbjct: 257 VFVEPDGEQLAE-------LAELVEAG-KLRPVVDRVFPLEDAAEAHERLESGH 302

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
COG2130	340	Putative NADP-dependent oxidoreductases [General f	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.98
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.98
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.98
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.98
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.98
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.97
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.97
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.97
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.97
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.97
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.97
PRK10083	339	putative oxidoreductase; Provisional	99.97
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.97
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.97
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.97
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.97
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.97
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.97
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.97
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.97
PTZ00354	334	alcohol dehydrogenase; Provisional	99.97
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.97
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.97
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.97
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.97
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.97
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.97
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.96
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.96
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.96
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.96
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.96
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.96
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.96
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.96
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.96
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.96
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.96
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.96
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.96
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.96
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.96
PLN02702	364	L-idonate 5-dehydrogenase	99.96
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.96
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.96
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.96
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.96
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.96
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.96
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.96
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.95
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.95
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.95
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.95
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.95
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.95
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.95
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.95
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.95
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.95
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.95
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.95
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.95
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.94
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.94
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.94
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.94
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.94
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.94
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.94
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.94
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.94
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.94
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.93
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.93
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.93
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.93
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.92
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.86
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.67
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.56
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.43
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.92
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.89
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.7
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.67
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.59
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.57
PLN02494	477	adenosylhomocysteinase	98.45
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.41
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.31
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.29
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.23
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.23
PRK08324	681	short chain dehydrogenase; Validated	98.21
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.2
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.14
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.14
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.01
COG0300	265	DltE Short-chain dehydrogenases of various substra	98.01
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.99
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.97
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.88
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.87
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.85
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.84
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.8
TIGR00438	188	rrmJ cell division protein FtsJ.	97.75
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.74
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.73
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.73
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	97.73
PRK04148	134	hypothetical protein; Provisional	97.72
PRK05993	277	short chain dehydrogenase; Provisional	97.69
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.67
COG4122	219	Predicted O-methyltransferase [General function pr	97.66
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.65
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.64
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.63
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.59
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.58
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.58
PRK05693	274	short chain dehydrogenase; Provisional	97.57
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.55
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.52
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.51
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.51
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.5
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.5
PRK06139	330	short chain dehydrogenase; Provisional	97.5
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.49
PRK08177	225	short chain dehydrogenase; Provisional	97.49
PLN03209	576	translocon at the inner envelope of chloroplast su	97.47
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.47
PRK07109	334	short chain dehydrogenase; Provisional	97.46
PRK06182	273	short chain dehydrogenase; Validated	97.45
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.44
PRK12742	237	oxidoreductase; Provisional	97.44
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.44
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.4
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.4
PRK06500	249	short chain dehydrogenase; Provisional	97.39
PRK08017	256	oxidoreductase; Provisional	97.38
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.38
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.37
PRK08265	261	short chain dehydrogenase; Provisional	97.37
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.37
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.37
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.36
PRK07806	248	short chain dehydrogenase; Provisional	97.36
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.36
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.36
PRK00536	262	speE spermidine synthase; Provisional	97.35
PRK07326	237	short chain dehydrogenase; Provisional	97.34
PRK06949	258	short chain dehydrogenase; Provisional	97.34
PRK06057	255	short chain dehydrogenase; Provisional	97.33
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	97.33
PLN02780	320	ketoreductase/ oxidoreductase	97.33
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.3
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.3
PRK14967	223	putative methyltransferase; Provisional	97.3
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	97.29
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.29
PRK00811	283	spermidine synthase; Provisional	97.29
PRK08339	263	short chain dehydrogenase; Provisional	97.27
PLN02366	308	spermidine synthase	97.27
PRK12939	250	short chain dehydrogenase; Provisional	97.26
PRK06484	520	short chain dehydrogenase; Validated	97.26
PRK07825	273	short chain dehydrogenase; Provisional	97.26
PRK06101	240	short chain dehydrogenase; Provisional	97.25
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.25
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.25
PRK07060	245	short chain dehydrogenase; Provisional	97.24
PRK07402	196	precorrin-6B methylase; Provisional	97.24
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.22
PRK07904	253	short chain dehydrogenase; Provisional	97.22
PRK06841	255	short chain dehydrogenase; Provisional	97.22
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.21
PRK08618	325	ornithine cyclodeaminase; Validated	97.21
PRK12829	264	short chain dehydrogenase; Provisional	97.2
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.2
PLN02476	278	O-methyltransferase	97.19
PRK05872	296	short chain dehydrogenase; Provisional	97.18
PRK05866	293	short chain dehydrogenase; Provisional	97.18
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.17
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.17
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.17
PRK11207	197	tellurite resistance protein TehB; Provisional	97.16
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.16
PRK06128	300	oxidoreductase; Provisional	97.16
PRK07814	263	short chain dehydrogenase; Provisional	97.15
PRK07831	262	short chain dehydrogenase; Provisional	97.15
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.14
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.14
PRK05867	253	short chain dehydrogenase; Provisional	97.14
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.12
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	97.12
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	97.11
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.1
PRK06180	277	short chain dehydrogenase; Provisional	97.1
PRK06196	315	oxidoreductase; Provisional	97.1
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.08
PRK06398	258	aldose dehydrogenase; Validated	97.07
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.06
PRK09291	257	short chain dehydrogenase; Provisional	97.06
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.05
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.05
PRK07478	254	short chain dehydrogenase; Provisional	97.05
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.04
PRK04457	262	spermidine synthase; Provisional	97.04
PRK07062	265	short chain dehydrogenase; Provisional	97.03
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.03
PRK07677	252	short chain dehydrogenase; Provisional	97.03
PRK07832	272	short chain dehydrogenase; Provisional	97.02
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	97.02
PRK09072	263	short chain dehydrogenase; Provisional	97.02
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	97.02
PRK06940	275	short chain dehydrogenase; Provisional	97.01
PRK06953	222	short chain dehydrogenase; Provisional	97.01
PRK12828	239	short chain dehydrogenase; Provisional	97.0
PRK08703	239	short chain dehydrogenase; Provisional	97.0
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.99
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	96.99
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.97
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.97
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.97
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	96.96
PRK06194	287	hypothetical protein; Provisional	96.96
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.95
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	96.93
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.93
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.93
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.92
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.92
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.92
PRK06114	254	short chain dehydrogenase; Provisional	96.92
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.91
PRK08628	258	short chain dehydrogenase; Provisional	96.89
PRK06198	260	short chain dehydrogenase; Provisional	96.89
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.89
PRK07063	260	short chain dehydrogenase; Provisional	96.89
PRK06125	259	short chain dehydrogenase; Provisional	96.88
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.88
PRK05854	313	short chain dehydrogenase; Provisional	96.88
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.88
PRK06701	290	short chain dehydrogenase; Provisional	96.86
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.86
PRK05875	276	short chain dehydrogenase; Provisional	96.86
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.86
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.86
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.86
PRK07576	264	short chain dehydrogenase; Provisional	96.85
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	96.85
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.85
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.85
PRK08862	227	short chain dehydrogenase; Provisional	96.85
PRK05876	275	short chain dehydrogenase; Provisional	96.85
PRK07454	241	short chain dehydrogenase; Provisional	96.85
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.84
PRK08267	260	short chain dehydrogenase; Provisional	96.84
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.84
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	96.83
PRK08643	256	acetoin reductase; Validated	96.83
PRK12937	245	short chain dehydrogenase; Provisional	96.83
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.83
PRK06172	253	short chain dehydrogenase; Provisional	96.83
PRK05717	255	oxidoreductase; Validated	96.83
PRK07340	304	ornithine cyclodeaminase; Validated	96.83
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.82
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.82
PRK06179	270	short chain dehydrogenase; Provisional	96.81
PRK07035	252	short chain dehydrogenase; Provisional	96.81
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.81
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.81
PRK06181	263	short chain dehydrogenase; Provisional	96.8
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.8
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.8
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	96.8
PRK06197	306	short chain dehydrogenase; Provisional	96.8
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.79
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.79
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	96.79
PRK07774	250	short chain dehydrogenase; Provisional	96.79
PRK07890	258	short chain dehydrogenase; Provisional	96.79
PRK08264	238	short chain dehydrogenase; Validated	96.79
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.79
CHL00194	317	ycf39 Ycf39; Provisional	96.79
PRK08589	272	short chain dehydrogenase; Validated	96.78
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	96.78
PRK06138	252	short chain dehydrogenase; Provisional	96.78
PRK05884	223	short chain dehydrogenase; Provisional	96.78
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.77
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.76
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.76
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	96.76
PRK07985	294	oxidoreductase; Provisional	96.75
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.75
PRK06720	169	hypothetical protein; Provisional	96.75
PRK06914	280	short chain dehydrogenase; Provisional	96.75
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.73
PRK06483	236	dihydromonapterin reductase; Provisional	96.73
PRK09242	257	tropinone reductase; Provisional	96.73
PRK07574	385	formate dehydrogenase; Provisional	96.73
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.72
PRK01581	374	speE spermidine synthase; Validated	96.72
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.72
COG2910	211	Putative NADH-flavin reductase [General function p	96.71
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.71
PRK09186	256	flagellin modification protein A; Provisional	96.71
PLN00203	519	glutamyl-tRNA reductase	96.7
PRK08317	241	hypothetical protein; Provisional	96.7
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.7
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.7
PRK08328	231	hypothetical protein; Provisional	96.7
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.69
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.68
PRK07067	257	sorbitol dehydrogenase; Provisional	96.68
PRK08226	263	short chain dehydrogenase; Provisional	96.68
PRK10258	251	biotin biosynthesis protein BioC; Provisional	96.68
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.67
PRK06484	520	short chain dehydrogenase; Validated	96.67
PLN02244	340	tocopherol O-methyltransferase	96.67
PLN03139	386	formate dehydrogenase; Provisional	96.67
PRK07024	257	short chain dehydrogenase; Provisional	96.66
PLN02253	280	xanthoxin dehydrogenase	96.66
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.65
PRK06482	276	short chain dehydrogenase; Provisional	96.65
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.65
PRK12747	252	short chain dehydrogenase; Provisional	96.65
PRK10538	248	malonic semialdehyde reductase; Provisional	96.65
PRK08251	248	short chain dehydrogenase; Provisional	96.65
PRK08303	305	short chain dehydrogenase; Provisional	96.64
PRK08263	275	short chain dehydrogenase; Provisional	96.64
PRK04266	226	fibrillarin; Provisional	96.64
PLN02823	336	spermine synthase	96.63
PRK07102	243	short chain dehydrogenase; Provisional	96.63
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.62
PRK08219	227	short chain dehydrogenase; Provisional	96.62
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.62
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	96.62
PRK07856	252	short chain dehydrogenase; Provisional	96.62
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.61
PLN03075	296	nicotianamine synthase; Provisional	96.6
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.59
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.59
PRK12367	245	short chain dehydrogenase; Provisional	96.58
KOG0725	270	consensus Reductases with broad range of substrate	96.57
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.57
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	96.57
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.57
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.57
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.56
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	96.55
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.54
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.54
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.54
PRK07074	257	short chain dehydrogenase; Provisional	96.53
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.52
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.52
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.52
PLN02256	304	arogenate dehydrogenase	96.51
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.51
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.51
PRK06141	314	ornithine cyclodeaminase; Validated	96.51
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.5
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.49
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.49
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	96.49
PRK08300	302	acetaldehyde dehydrogenase; Validated	96.48
PRK12743	256	oxidoreductase; Provisional	96.47
PRK07577	234	short chain dehydrogenase; Provisional	96.47
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.47
PRK08278	273	short chain dehydrogenase; Provisional	96.45
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.45
PRK07791	286	short chain dehydrogenase; Provisional	96.45
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.45
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.44
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.44
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.44
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.43
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.43
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.42
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.42
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.42
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.42
PRK05650	270	short chain dehydrogenase; Provisional	96.41
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.4
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.4
PRK07417	279	arogenate dehydrogenase; Reviewed	96.39
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.39
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.36
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.34
PRK06523	260	short chain dehydrogenase; Provisional	96.34
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.34
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.34
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.31
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.3
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.29
PLN02233	261	ubiquinone biosynthesis methyltransferase	96.29
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.29
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	96.28
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.28
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.27
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.27
PRK12746	254	short chain dehydrogenase; Provisional	96.27
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.26
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	96.25
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.24
PRK10669	558	putative cation:proton antiport protein; Provision	96.23
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.23
PRK13243	333	glyoxylate reductase; Reviewed	96.22
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	96.22
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	96.21
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.2
TIGR00452	314	methyltransferase, putative. Known examples to dat	96.18
PRK07775	274	short chain dehydrogenase; Provisional	96.18
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.16
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.15
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.15
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	96.13
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	96.13
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.13
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.13
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.13
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.12
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	96.12
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.12
PRK07578	199	short chain dehydrogenase; Provisional	96.11
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.11
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	96.11
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.1
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.1
PLN00016	378	RNA-binding protein; Provisional	96.1
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	96.1
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	96.09
KOG1252	362	consensus Cystathionine beta-synthase and related	96.09
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.08
PLN02928	347	oxidoreductase family protein	96.08
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.07
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	96.07
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	96.07
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.06
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	96.05
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.05
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.05
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.03
PRK14968	188	putative methyltransferase; Provisional	96.02
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.02
PRK05855	582	short chain dehydrogenase; Validated	96.01
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.01
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	96.0
PLN02336	475	phosphoethanolamine N-methyltransferase	96.0

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.5e-42  Score=279.31  Aligned_cols=239  Identities=25%  Similarity=0.405  Sum_probs=214.5

Q ss_pred             CCCCCccccCCCCceee-------eeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCE
Q 025101            2 PRDQTSRFKDLRGETIH-------HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGST   74 (258)
Q Consensus         2 ~~~~~~~~~~~~G~~v~-------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~   74 (258)
                      .+|+.|.+| +.|...+       ++..+|+|+||+++|+++++++|+++++++||.+.|++.|.|++| +..++++|++
T Consensus        92 ~~Cg~C~~C-~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~al-k~~~~~pG~~  169 (339)
T COG1064          92 ISCGECEYC-RSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKW  169 (339)
T ss_pred             CCCCCCccc-cCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeeh-hhcCCCCCCE
Confidence            579999999 9997664       677789999999999999999999999999999999999999997 5599999999


Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChh
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS  154 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~  154 (258)
                      |+|+|.|++|++++|+|+.+|+ +|++++++++|.+.++++|++++++.++   ++..+.+++.    +|+++|+++ +.
T Consensus       170 V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~~~~---~~~~~~~~~~----~d~ii~tv~-~~  240 (339)
T COG1064         170 VAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINSSD---SDALEAVKEI----ADAIIDTVG-PA  240 (339)
T ss_pred             EEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEEcCC---chhhHHhHhh----CcEEEECCC-hh
Confidence            9999999999999999999998 9999999999999999999999999876   7787777763    999999999 77


Q ss_pred             hHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCccccccccc
Q 025101          155 LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF  234 (258)
Q Consensus       155 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  234 (258)
                      +++.+++.|+++ |+++++|........+.+.+.++.+++++.|+..++   +.++++++++..+|.+++.  +.+.+++
T Consensus       241 ~~~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~---~~d~~e~l~f~~~g~Ikp~--i~e~~~l  314 (339)
T COG1064         241 TLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT---RADLEEALDFAAEGKIKPE--ILETIPL  314 (339)
T ss_pred             hHHHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCC---HHHHHHHHHHHHhCCceee--EEeeECH
Confidence            799999999999 999999977422334567777888899999998777   6899999999999965544  6479999


Q ss_pred             ccHHHHHHHHhcCCee-EEEEeeC
Q 025101          235 EEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       235 ~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      +++++||+.+++++.. |+||.+.
T Consensus       315 ~~in~A~~~m~~g~v~gR~Vi~~~  338 (339)
T COG1064         315 DEINEAYERMEKGKVRGRAVIDMS  338 (339)
T ss_pred             HHHHHHHHHHHcCCeeeEEEecCC
Confidence            9999999999999988 9999875

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.7e-40  Score=259.05  Aligned_cols=248  Identities=24%  Similarity=0.396  Sum_probs=214.5

Q ss_pred             CCCCCccccCCCCceee----ee----ccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCC
Q 025101            2 PRDQTSRFKDLRGETIH----HF----VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGS   73 (258)
Q Consensus         2 ~~~~~~~~~~~~G~~v~----~~----~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~   73 (258)
                      ++|+.|++| +.|.+++    .|    +-+|++++|+++++++|+|+|+++|++++|++. ++++++||. +++++++|.
T Consensus        95 ~~c~~cd~C-K~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs  171 (354)
T KOG0024|consen   95 LPCRDCDFC-KEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIE-PLSVGVHAC-RRAGVKKGS  171 (354)
T ss_pred             Cccccchhh-hCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhccccc-chhhhhhhh-hhcCcccCC
Confidence            468888888 8888886    12    123999999999999999999999999999998 799999985 799999999


Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCC-CccHHHHHHHhcCC-CCCEEEEecC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG-DKSVSQIIIDMTDG-GADYCFECVG  151 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~-~~~~~~~i~~~~~~-~~d~v~d~~g  151 (258)
                      +|||+|+|++|+.+...||.+|+.+|++++..++|++.++++|++.+.+....+ ++++.+.+....++ .+|++|||+|
T Consensus       172 ~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG  251 (354)
T KOG0024|consen  172 KVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSG  251 (354)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccC
Confidence            999999999999999999999999999999999999999999998776655522 34445555555554 6999999999


Q ss_pred             ChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccc
Q 025101          152 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHE  231 (258)
Q Consensus       152 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  231 (258)
                      ...+++.++..++.+ |++++.|+..  +..+|+......|++++.|++-+.   +.+|+..++++++|++++++++|++
T Consensus       252 ~~~~~~aai~a~r~g-Gt~vlvg~g~--~~~~fpi~~v~~kE~~~~g~fry~---~~~y~~ai~li~sGki~~k~lIT~r  325 (354)
T KOG0024|consen  252 AEVTIRAAIKATRSG-GTVVLVGMGA--EEIQFPIIDVALKEVDLRGSFRYC---NGDYPTAIELVSSGKIDVKPLITHR  325 (354)
T ss_pred             chHHHHHHHHHhccC-CEEEEeccCC--CccccChhhhhhheeeeeeeeeec---cccHHHHHHHHHcCCcCchhheecc
Confidence            998899999999999 9999998654  466788888888999999996332   4589999999999999999999999


Q ss_pred             cccccHHHHHHHHhcCCe--eEEEEeeCC
Q 025101          232 MKFEEINSAFDLLIKGKC--LRCVIWMGE  258 (258)
Q Consensus       232 ~~~~~~~~a~~~~~~~~~--~k~vi~~~~  258 (258)
                      |+++++.+||+.+.+++.  +|+++..++
T Consensus       326 ~~~~~~~eAf~~~~~~~~~~iKv~i~~~~  354 (354)
T KOG0024|consen  326 YKFDDADEAFETLQHGEEGVIKVIITGPE  354 (354)
T ss_pred             cccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence            999999999999988774  499998764

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.7e-40  Score=256.62  Aligned_cols=250  Identities=57%  Similarity=1.034  Sum_probs=230.1

Q ss_pred             CCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHH
Q 025101            4 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI   83 (258)
Q Consensus         4 ~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~   83 (258)
                      +|.++|. ..|+.++.|.+-.+|+||.+++...+.++++..+++.++++.|...|+|.|.++.+++++|+++.|+|.|++
T Consensus       126 DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~V  204 (375)
T KOG0022|consen  126 DGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGV  204 (375)
T ss_pred             CCceeee-eCCCceEEecccccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchH
Confidence            4555554 456666666655699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhh
Q 025101           84 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC  163 (258)
Q Consensus        84 G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l  163 (258)
                      |+++++-+|..|++++|++|-+++|.+.++++|++..+|+.++ ...+.+.|.+++++++|+-|||+|+..++++++.+.
T Consensus       205 GLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~-~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~  283 (375)
T KOG0022|consen  205 GLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDL-KKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESC  283 (375)
T ss_pred             HHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhc-cccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999853 236889999999999999999999999999999999


Q ss_pred             hcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHH
Q 025101          164 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL  243 (258)
Q Consensus       164 ~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~  243 (258)
                      ..++|+-+.+|.....+..++.++.++. +.++.|+.++.+..+.+++.+++.+.++.+.++.+++|++||+++++||+.
T Consensus       284 h~GwG~sv~iGv~~~~~~i~~~p~~l~~-GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~l  362 (375)
T KOG0022|consen  284 HKGWGKSVVIGVAAAGQEISTRPFQLVT-GRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDL  362 (375)
T ss_pred             hcCCCeEEEEEecCCCcccccchhhhcc-ccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHH
Confidence            9998999999998888888888888777 899999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeeEEEEee
Q 025101          244 LIKGKCLRCVIWM  256 (258)
Q Consensus       244 ~~~~~~~k~vi~~  256 (258)
                      |.+++.+|.|+.+
T Consensus       363 l~~GksiR~vl~~  375 (375)
T KOG0022|consen  363 LHEGKSIRCVLWM  375 (375)
T ss_pred             HhCCceEEEEEeC
Confidence            9999999888864

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=7.4e-40  Score=258.72  Aligned_cols=249  Identities=45%  Similarity=0.846  Sum_probs=231.6

Q ss_pred             CCCCCccccCCCCceee----------------------------eeccccceeeeEEEecceEEEcCCCCCccchhhcc
Q 025101            2 PRDQTSRFKDLRGETIH----------------------------HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS   53 (258)
Q Consensus         2 ~~~~~~~~~~~~G~~v~----------------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~   53 (258)
                      ..||.|++| +.|..++                            .+.+.++|+||.++++..++|++++.+++.++++.
T Consensus        89 p~CG~C~~C-~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~llG  167 (366)
T COG1062          89 PECGQCKFC-LSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLG  167 (366)
T ss_pred             CCCCCCchh-hCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCCccceEEEe
Confidence            369999999 8898775                            12223589999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCc-cHH
Q 025101           54 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK-SVS  132 (258)
Q Consensus        54 ~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~-~~~  132 (258)
                      |...|.+.+..+.+++++|+++.|+|.|++|++++|-|+..|+.++++++.+++|+++++++|+++++|.++   . ++.
T Consensus       168 CgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~---~~~vv  244 (366)
T COG1062         168 CGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKE---VDDVV  244 (366)
T ss_pred             eeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchh---hhhHH
Confidence            999999999899999999999999999999999999999999999999999999999999999999999998   5 699


Q ss_pred             HHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHH
Q 025101          133 QIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPI  212 (258)
Q Consensus       133 ~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (258)
                      +.+.+++++++|++|||+|+..++++++.++.++ |+.+.+|........++++..+... .+++|+.++....+.+++.
T Consensus       245 ~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~-G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~diP~  322 (366)
T COG1062         245 EAIVELTDGGADYAFECVGNVEVMRQALEATHRG-GTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDIPR  322 (366)
T ss_pred             HHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcC-CeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCccccchhH
Confidence            9999999989999999999999999999999998 9999999888777788888888874 9999999998888999999


Q ss_pred             HHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          213 LLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       213 ~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      +++++.+|++++.+++++.++++|+++||+.+++++.+|.||.+
T Consensus       323 lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~IR~Vi~~  366 (366)
T COG1062         323 LVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSIRSVIRF  366 (366)
T ss_pred             HHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCceeeEEecC
Confidence            99999999999999999999999999999999999999888864

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=3.1e-39  Score=265.72  Aligned_cols=243  Identities=22%  Similarity=0.331  Sum_probs=206.2

Q ss_pred             CCCCccccCCCCceeeeec---cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEc
Q 025101            3 RDQTSRFKDLRGETIHHFV---SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG   79 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G   79 (258)
                      |+++..|.  +||+|+.+.   ..|+|+||+.+|++.++++|+++++++||++++++.|||++|....++++|++|||+|
T Consensus        73 G~~V~~~~--~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~g  150 (326)
T COG0604          73 GSGVTGFK--VGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHG  150 (326)
T ss_pred             CCCCCCcC--CCCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEec
Confidence            67888887  999999774   5799999999999999999999999999999999999999999889999999999998


Q ss_pred             c-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHH
Q 025101           80 L-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQ  157 (258)
Q Consensus        80 ~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~  157 (258)
                      + |++|++++|+||.+|+ .++++++++++.++++++|+++++++++   +++.+.+++++++ ++|+|||++|+.. +.
T Consensus       151 aaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~---~~~~~~v~~~t~g~gvDvv~D~vG~~~-~~  225 (326)
T COG0604         151 AAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYRE---EDFVEQVRELTGGKGVDVVLDTVGGDT-FA  225 (326)
T ss_pred             CCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCc---ccHHHHHHHHcCCCCceEEEECCCHHH-HH
Confidence            5 9999999999999998 7777777888888999999999999999   8899999999998 9999999999988 88


Q ss_pred             HHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC---CCCCcHHHHHHHHHcCCCCCCccccccccc
Q 025101          158 EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL---KAKSDIPILLKRYMDKELELDKFVTHEMKF  234 (258)
Q Consensus       158 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  234 (258)
                      .+++.++++ |+++.+|...+....+++...++.+.++..+......   ...+.+.++.+++.+|.++  +.+..+||+
T Consensus       226 ~~l~~l~~~-G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~--~~i~~~~~l  302 (326)
T COG0604         226 ASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLK--PVIDRVYPL  302 (326)
T ss_pred             HHHHHhccC-CEEEEEecCCCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCc--ceeccEech
Confidence            999999999 9999999776323444556666777888888765432   1134577789999999555  458789999


Q ss_pred             ccHHHHHH--HHhcCCee-EEEEee
Q 025101          235 EEINSAFD--LLIKGKCL-RCVIWM  256 (258)
Q Consensus       235 ~~~~~a~~--~~~~~~~~-k~vi~~  256 (258)
                      ++...+..  .++ ++.. |+|+++
T Consensus       303 ~e~~~a~a~~~~~-~~~~GKvvl~~  326 (326)
T COG0604         303 AEAPAAAAHLLLE-RRTTGKVVLKV  326 (326)
T ss_pred             hhhHHHHHHHHcc-cCCcceEEEeC
Confidence            99544444  444 3555 999874

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=1e-37  Score=263.36  Aligned_cols=226  Identities=36%  Similarity=0.657  Sum_probs=201.6

Q ss_pred             cceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEc
Q 025101           24 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  103 (258)
Q Consensus        24 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~  103 (258)
                      |+|+||+.+|++.++++|+++++++++.+++++.|||+++.+...+++|++|||+|+|++|++++|+++..|+.+|++++
T Consensus       144 G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~  223 (371)
T cd08281         144 SAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVD  223 (371)
T ss_pred             ccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEc
Confidence            68999999999999999999999999999999999999887788899999999999999999999999999996699999


Q ss_pred             CCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCcee
Q 025101          104 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS  183 (258)
Q Consensus       104 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~  183 (258)
                      ++++|.++++++|++.++++.+   +++.+.+++.+++++|++|||+|.+.++..++++++++ |+++.+|........+
T Consensus       224 ~~~~r~~~a~~~Ga~~~i~~~~---~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~  299 (371)
T cd08281         224 LNEDKLALARELGATATVNAGD---PNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLS  299 (371)
T ss_pred             CCHHHHHHHHHcCCceEeCCCc---hhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEccCCCCceee
Confidence            9999999999999999999887   78888888887668999999999877799999999999 9999999754333456


Q ss_pred             echHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEE
Q 025101          184 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCV  253 (258)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~v  253 (258)
                      ++...++.+++++.|++.+.+..+.++.++++++.+|++++.++++++|+++++++||+.+.+++..|.|
T Consensus       300 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~v  369 (371)
T cd08281         300 VPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQV  369 (371)
T ss_pred             ecHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeee
Confidence            6777788899999998766544456789999999999999888899999999999999999998887444

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=2e-37  Score=260.58  Aligned_cols=229  Identities=35%  Similarity=0.605  Sum_probs=202.3

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+.+|+..++++|+++++++++.+++++.+||+++.+...+++|++|||+|+|++|++++|+|+..|+.+|+++
T Consensus       128 ~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~  207 (358)
T TIGR03451       128 IGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAV  207 (358)
T ss_pred             cccccceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999887778889999999999999999999999999999569999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      +++++|.++++++|++.++++++   +++.+.+++.+++ ++|+||||+|++.++..+++.++++ |+++.+|.......
T Consensus       208 ~~~~~~~~~~~~~Ga~~~i~~~~---~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~  283 (358)
T TIGR03451       208 DIDDRKLEWAREFGATHTVNSSG---TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMT  283 (358)
T ss_pred             cCCHHHHHHHHHcCCceEEcCCC---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCce
Confidence            99999999999999999999887   7888889888877 8999999999877799999999999 99999997644334


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEe
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  255 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  255 (258)
                      .+++...++.+++++.+++.+.......++++++++.+|.+++.++++++|+++++++||+.+++++..|+++.
T Consensus       284 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~  357 (358)
T TIGR03451       284 LELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVVE  357 (358)
T ss_pred             eeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcceeEEe
Confidence            55666677888999998865433335678899999999999888889999999999999999998877788875

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=1.3e-37  Score=235.60  Aligned_cols=244  Identities=18%  Similarity=0.256  Sum_probs=208.8

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |+|++++.  .||+|.-...+|.|+|++.+|...++++|+.+++++|+++...++|||.-+++..++++|++||++.+ |
T Consensus        80 G~gvtdrk--vGDrVayl~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAG  157 (336)
T KOG1197|consen   80 GEGVTDRK--VGDRVAYLNPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAG  157 (336)
T ss_pred             cCCccccc--cccEEEEeccchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccc
Confidence            67899998  99999977789999999999999999999999999999999999999999999999999999999964 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAY  160 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~  160 (258)
                      ++|++++|++|..|+ .++++..+.+|.+.+++.|+++.|+++.   +++.+++++++++ |+|+++|.+|..+ +..++
T Consensus       158 GVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~h~I~y~~---eD~v~~V~kiTngKGVd~vyDsvG~dt-~~~sl  232 (336)
T KOG1197|consen  158 GVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAEHPIDYST---EDYVDEVKKITNGKGVDAVYDSVGKDT-FAKSL  232 (336)
T ss_pred             cHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCcceeeccc---hhHHHHHHhccCCCCceeeeccccchh-hHHHH
Confidence            999999999999999 8999999999999999999999999999   9999999999988 9999999999988 99999


Q ss_pred             HhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC-CCCC----cHHHHHHHHHcCCCCCCcccccccccc
Q 025101          161 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL-KAKS----DIPILLKRYMDKELELDKFVTHEMKFE  235 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~  235 (258)
                      ++|++. |+++.+|..++. ..+++...+..|.+++...+.-.+ ..+.    ...+++.++.+|.+++.  +.++||++
T Consensus       233 ~~Lk~~-G~mVSfG~asgl-~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~--I~~~ypls  308 (336)
T KOG1197|consen  233 AALKPM-GKMVSFGNASGL-IDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIH--IDHVYPLS  308 (336)
T ss_pred             HHhccC-ceEEEeccccCC-CCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCcccee--eeeecchH
Confidence            999999 999999976652 223333344444554433321111 1122    34467778888966655  99999999


Q ss_pred             cHHHHHHHHhcCCee-EEEEeeC
Q 025101          236 EINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       236 ~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      ++.+|+..+++++.. |+++.+.
T Consensus       309 ~vadA~~diesrktvGkvlLlp~  331 (336)
T KOG1197|consen  309 KVADAHADIESRKTVGKVLLLPG  331 (336)
T ss_pred             HHHHHHHHHHhhhccceEEEeCC
Confidence            999999999999888 9998764

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=1.9e-36  Score=255.20  Aligned_cols=232  Identities=46%  Similarity=0.925  Sum_probs=194.3

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+++|++.++++|+++++++++.+++++.|||+++.+..++++|++|||+|+|++|++++|+||.+|+.+|+++
T Consensus       137 ~G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~  216 (368)
T TIGR02818       137 CSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAI  216 (368)
T ss_pred             CccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            36999999999999999999999999999999999999998778899999999999999999999999999998679999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.++++++|++.++|+.+ ..+++.+.+++++++++|++|||+|.+.++..+++++++++|+++.+|........
T Consensus       217 ~~~~~~~~~a~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~  295 (368)
T TIGR02818       217 DINPAKFELAKKLGATDCVNPND-YDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEI  295 (368)
T ss_pred             cCCHHHHHHHHHhCCCeEEcccc-cchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcc
Confidence            99999999999999999998764 11456677877776689999999998777999999998732999999975432333


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      ++....++. +..+.++..+....+.++.++++++.+|++++.++++++|+++++++|++.+++++..|++|.+
T Consensus       296 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~k~~v~~  368 (368)
T TIGR02818       296 STRPFQLVT-GRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKSIRTVIHY  368 (368)
T ss_pred             cccHHHHhc-cceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCceeEEeeC
Confidence            444444443 4456776544333345789999999999998888999999999999999999888767999875

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=3.5e-36  Score=254.79  Aligned_cols=232  Identities=53%  Similarity=0.945  Sum_probs=197.8

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+++|++.++++|+++++++++.+++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus       150 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~  229 (381)
T PLN02740        150 TSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGV  229 (381)
T ss_pred             CccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEE
Confidence            48999999999999999999999999999999999999988778899999999999999999999999999998669999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      +++++|.++++++|++.++|+++ ..+++.+.+++.+++++|++||++|.+.++..++.++++++|+++.+|.......+
T Consensus       230 ~~~~~r~~~a~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~  308 (381)
T PLN02740        230 DINPEKFEKGKEMGITDFINPKD-SDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKML  308 (381)
T ss_pred             cCChHHHHHHHHcCCcEEEeccc-ccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCcee
Confidence            99999999999999999998775 11247778888776689999999998777999999998833999999976443233


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      +++...++ ++.++.|+..+.+....+++++++++.++.+++.++++++|+++++++|++.+.+++..|++|+.
T Consensus       309 ~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~~k~~~~~  381 (381)
T PLN02740        309 PLHPMELF-DGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKALRCLLHL  381 (381)
T ss_pred             cccHHHHh-cCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCceeEEEeC
Confidence            44443333 58899988766554445789999999999998888899999999999999999988877999863

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.7e-35  Score=249.95  Aligned_cols=231  Identities=54%  Similarity=0.975  Sum_probs=197.2

Q ss_pred             cceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEc
Q 025101           24 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  103 (258)
Q Consensus        24 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~  103 (258)
                      |+|+||+.+|+..++++|+++++++++.+++++.++|+++....++++|++|||+|+|++|++++|+++.+|+..|++++
T Consensus       146 G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~  225 (378)
T PLN02827        146 SSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVD  225 (378)
T ss_pred             ccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            79999999999999999999999999999888899998877778899999999999999999999999999985688888


Q ss_pred             CCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCcee
Q 025101          104 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS  183 (258)
Q Consensus       104 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~  183 (258)
                      +++++.++++++|++.++++++ ..+++.+.+++.+++++|+|||++|....+..+++.+++++|+++.+|.....  ..
T Consensus       226 ~~~~~~~~a~~lGa~~~i~~~~-~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~--~~  302 (378)
T PLN02827        226 INPEKAEKAKTFGVTDFINPND-LSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK--PE  302 (378)
T ss_pred             CCHHHHHHHHHcCCcEEEcccc-cchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCC--cc
Confidence            8999999999999999998765 11357777887776689999999998766899999998843899999975432  22


Q ss_pred             ech-HHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEeeC
Q 025101          184 LSS-FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  257 (258)
Q Consensus       184 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~  257 (258)
                      +.. ..++.+++++.|+..+.+....++.++++++.+|++++.++++++|+++++.+|++.+++++..|+||.+.
T Consensus       303 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~~k~vi~~~  377 (378)
T PLN02827        303 VSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKCLRCVIHMP  377 (378)
T ss_pred             ccccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCceEEEEEec
Confidence            322 34667899999987655444567889999999999988778999999999999999999988789999875

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=1e-35  Score=248.59  Aligned_cols=223  Identities=26%  Similarity=0.432  Sum_probs=193.9

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+.+|++.++++|+++++++++++++++.|||+++ ....+++|++|||+|+|++|++++|+++.+|+++|+++
T Consensus       116 ~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~  194 (339)
T cd08239         116 DGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGV  194 (339)
T ss_pred             CCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            58999999999999999999999999999999999999987 56788899999999999999999999999999449999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      ++++++.++++++|++.++++++   ++ .+.+.+.+++ ++|+||||+|+...+..++++++++ |+++.+|.... ..
T Consensus       195 ~~~~~~~~~~~~~ga~~~i~~~~---~~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~  268 (339)
T cd08239         195 DPSPERLELAKALGADFVINSGQ---DD-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPW-GRLVLVGEGGE-LT  268 (339)
T ss_pred             CCCHHHHHHHHHhCCCEEEcCCc---ch-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcCCCC-cc
Confidence            99999999999999999999877   55 6778787777 8999999999988678999999999 99999996543 22


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      .. ....++.+++++.+++...   .++++++++++.+|.+++.++++++|+++++++||+.++++...|+|+++
T Consensus       269 ~~-~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~gKvvi~~  339 (339)
T cd08239         269 IE-VSNDLIRKQRTLIGSWYFS---VPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF  339 (339)
T ss_pred             cC-cHHHHHhCCCEEEEEecCC---HHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCCceEEEEeC
Confidence            22 1234677899999986543   46799999999999988888899999999999999999887655999875

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=1.7e-35  Score=249.67  Aligned_cols=231  Identities=47%  Similarity=0.933  Sum_probs=194.9

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+.++++.++++|+++++++++++++++.|||+++.+...+++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus       138 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~  217 (368)
T cd08300         138 TSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGI  217 (368)
T ss_pred             cccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            36899999999999999999999999999999999999988777889999999999999999999999999999669999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.++++++|+++++|+++ .++++.+.+++++++++|+|||++|++..+..+++++++++|+++.+|........
T Consensus       218 ~~~~~~~~~~~~lGa~~~i~~~~-~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~  296 (368)
T cd08300         218 DINPDKFELAKKFGATDCVNPKD-HDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEI  296 (368)
T ss_pred             eCCHHHHHHHHHcCCCEEEcccc-cchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCcc
Confidence            99999999999999999998876 11257788888876689999999998766999999998733999999965432233


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEe
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  255 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  255 (258)
                      ..+...+.. ..++.++..+.+..+.+++++++++.+|++++.++++++|+++++.+||+.+.+++..|++++
T Consensus       297 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~~k~~~~  368 (368)
T cd08300         297 STRPFQLVT-GRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKSIRTVVK  368 (368)
T ss_pred             ccCHHHHhh-cCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCCceeeeC
Confidence            334444433 456677665555456788999999999999888889999999999999999998877799875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-35  Score=248.11  Aligned_cols=240  Identities=16%  Similarity=0.238  Sum_probs=196.6

Q ss_pred             CCCCCccccCCCCceee-------ee-----ccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCC
Q 025101            2 PRDQTSRFKDLRGETIH-------HF-----VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANV   69 (258)
Q Consensus         2 ~~~~~~~~~~~~G~~v~-------~~-----~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~   69 (258)
                      .+||.|.+| +.|...+       +.     ...|+|+||+++|++.++++|+++++++++.. .++++||+++. ....
T Consensus        91 ~~cg~c~~c-~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~al~-~~~~  167 (343)
T PRK09880         91 KPCGHCKYC-LSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMAFA-EPLAVAIHAAH-QAGD  167 (343)
T ss_pred             CCCcCChhh-cCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHHhh-cHHHHHHHHHH-hcCC
Confidence            357777777 6565432       21     12589999999999999999999998776644 47889999874 4556


Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      .+|++|+|+|+|++|++++|+++.+|+++|+++++++++.++++++|+++++|+++   +++.+ +.+. .+++|+||||
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~-~~~~-~g~~D~vid~  242 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN---DDLDH-YKAE-KGYFDVSFEV  242 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCc---ccHHH-Hhcc-CCCCCEEEEC
Confidence            68999999999999999999999999967999999999999999999999999877   55443 2222 2369999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccc
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT  229 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  229 (258)
                      +|.+.++..+++.++++ |+++.+|....  ..+++...++.+++++.++...    .++++++++++.+|++++.++++
T Consensus       243 ~G~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~k~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~  315 (343)
T PRK09880        243 SGHPSSINTCLEVTRAK-GVMVQVGMGGA--PPEFPMMTLIVKEISLKGSFRF----TEEFNTAVSWLANGVINPLPLLS  315 (343)
T ss_pred             CCCHHHHHHHHHHhhcC-CEEEEEccCCC--CCccCHHHHHhCCcEEEEEeec----cccHHHHHHHHHcCCCCchhheE
Confidence            99877789999999999 99999996432  3456666778889999988632    36799999999999998888899


Q ss_pred             cccccccHHHHHHHHhcCCee-EEEEee
Q 025101          230 HEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       230 ~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ++|+++++++|++.+.+++.. |+++.+
T Consensus       316 ~~~~l~~~~~A~~~~~~~~~~gKvvl~~  343 (343)
T PRK09880        316 AEYPFTDLEEALIFAGDKTQAAKVQLVF  343 (343)
T ss_pred             EEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence            999999999999999887655 999874

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=3.6e-35  Score=247.90  Aligned_cols=228  Identities=56%  Similarity=1.016  Sum_probs=196.8

Q ss_pred             cceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEc
Q 025101           24 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  103 (258)
Q Consensus        24 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~  103 (258)
                      |+|+||+++|+..++++|+++++++++++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++
T Consensus       140 G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~  219 (369)
T cd08301         140 STFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVD  219 (369)
T ss_pred             ccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence            78999999999999999999999999999999999999887788999999999999999999999999999986799999


Q ss_pred             CCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhc-CCceEEEecccCCCCce
Q 025101          104 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK-GWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       104 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~-~~G~~v~~g~~~~~~~~  182 (258)
                      +++++.++++++|++.++++.+ ..+++.+.+++.+++++|++||++|....+..++.++++ + |+++.+|........
T Consensus       220 ~~~~~~~~~~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~-g~~v~~g~~~~~~~~  297 (369)
T cd08301         220 LNPSKFEQAKKFGVTEFVNPKD-HDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGW-GVTVLLGVPHKDAVF  297 (369)
T ss_pred             CCHHHHHHHHHcCCceEEcccc-cchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCC-CEEEEECcCCCCccc
Confidence            9999999999999998888764 113466777777766899999999988778999999999 6 999999976533344


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEE
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  254 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi  254 (258)
                      +++...++ +++++.|+..+.+..+.+++++++++.++.+++.++++++|+++++++||+.+++++..|+++
T Consensus       298 ~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~  368 (369)
T cd08301         298 STHPMNLL-NGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECLRCIL  368 (369)
T ss_pred             ccCHHHHh-cCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCceeEEe
Confidence            45544444 589999987666554567899999999999888888899999999999999999998888887

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=1.8e-34  Score=243.22  Aligned_cols=229  Identities=50%  Similarity=0.926  Sum_probs=195.8

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+.++++.++++|+++++++++++++++.|||+++.+..++++|++|||+|+|++|++++|+++.+|+.+|+++
T Consensus       136 ~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~  215 (365)
T cd08277         136 TSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGV  215 (365)
T ss_pred             cccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            47899999999999999999999999999999999999988778889999999999999999999999999998679999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhc-CCceEEEecccCCCCc
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK-GWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~-~~G~~v~~g~~~~~~~  181 (258)
                      ++++++.++++++|++++++..+ ...++.+.+++.+++++|+||||+|....+..+++++++ + |+++.+|...+ ..
T Consensus       216 ~~~~~~~~~~~~~ga~~~i~~~~-~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~-~~  292 (365)
T cd08277         216 DINEDKFEKAKEFGATDFINPKD-SDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGW-GVSVVVGVPPG-AE  292 (365)
T ss_pred             eCCHHHHHHHHHcCCCcEecccc-ccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCC-CEEEEEcCCCc-cc
Confidence            99999999999999999998765 112356677777766899999999987768999999987 6 99999996542 23


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEe
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  255 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  255 (258)
                      .+++...++. ++++.+++.+.+..+.+++++++++.++.++++++++++|+++++++|++.+++++..|+++.
T Consensus       293 ~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~i~  365 (365)
T cd08277         293 LSIRPFQLIL-GRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGECIRTVIT  365 (365)
T ss_pred             cccCHhHHhh-CCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCCceEeeC
Confidence            3445555554 889988876665445678999999999998888899999999999999999988876698873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.7e-35  Score=229.14  Aligned_cols=240  Identities=23%  Similarity=0.351  Sum_probs=206.0

Q ss_pred             CCCCCccccCCCCceee--------------eeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhc
Q 025101            2 PRDQTSRFKDLRGETIH--------------HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA   67 (258)
Q Consensus         2 ~~~~~~~~~~~~G~~v~--------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~   67 (258)
                      .+|+.|.+| ..|...+              +...+|+||+|+++++.+++++|++++.++||.+.|+..|+|.+| ...
T Consensus       100 ~sC~~CE~C-~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~  177 (360)
T KOG0023|consen  100 GSCLSCEYC-KSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPL-KRS  177 (360)
T ss_pred             ccccCcccc-ccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehh-HHc
Confidence            468888888 7777664              112336699999999999999999999999999999999999987 677


Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      ++.+|+++.|.|+|++|++++|+||++|. +|+++++++ +|.+.++.+|++..++..+  ++++.+.+.+.+++++|-|
T Consensus       178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~LGAd~fv~~~~--d~d~~~~~~~~~dg~~~~v  254 (360)
T KOG0023|consen  178 GLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSLGADVFVDSTE--DPDIMKAIMKTTDGGIDTV  254 (360)
T ss_pred             CCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhcCcceeEEecC--CHHHHHHHHHhhcCcceee
Confidence            88899999999997799999999999999 999999998 5666778899999888883  2889999988777666666


Q ss_pred             EEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCc
Q 025101          147 FECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDK  226 (258)
Q Consensus       147 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  226 (258)
                      .+-  ....++.++.+++++ |+++++|....  +..++.+.+..+.+.+.|+..+.   +.+.++++++..++.++.. 
T Consensus       255 ~~~--a~~~~~~~~~~lk~~-Gt~V~vg~p~~--~~~~~~~~lil~~~~I~GS~vG~---~ket~E~Ldf~a~~~ik~~-  325 (360)
T KOG0023|consen  255 SNL--AEHALEPLLGLLKVN-GTLVLVGLPEK--PLKLDTFPLILGRKSIKGSIVGS---RKETQEALDFVARGLIKSP-  325 (360)
T ss_pred             eec--cccchHHHHHHhhcC-CEEEEEeCcCC--cccccchhhhcccEEEEeecccc---HHHHHHHHHHHHcCCCcCc-
Confidence            655  555589999999999 99999997643  66777778888899999998877   6889999999999966655 


Q ss_pred             ccccccccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          227 FVTHEMKFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       227 ~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                       + +..+++++++||+.+++++.. |.|+++.
T Consensus       326 -I-E~v~~~~v~~a~erm~kgdV~yRfVvD~s  355 (360)
T KOG0023|consen  326 -I-ELVKLSEVNEAYERMEKGDVRYRFVVDVS  355 (360)
T ss_pred             -e-EEEehhHHHHHHHHHHhcCeeEEEEEEcc
Confidence             5 889999999999999999988 9999874

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=4.5e-34  Score=239.34  Aligned_cols=228  Identities=20%  Similarity=0.287  Sum_probs=190.5

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+.+|++.++++|+++++++++.+. ++.++++++ ....+++|++|||+|+|++|++++|+|+..|++.|+++
T Consensus       114 ~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~  191 (347)
T PRK10309        114 DGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAI  191 (347)
T ss_pred             CCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            5899999999999999999999999998875 566788874 66788899999999999999999999999999557889


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCC-EEEEecCChhhHHHHHHhhhcCCceEEEecccCCCC
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GAD-YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  180 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d-~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  180 (258)
                      ++++++.+.++++|++.++++++   .+ .+.+.+.+++ ++| ++|||+|.+.++..+++.++++ |+++.+|......
T Consensus       192 ~~~~~~~~~~~~~Ga~~~i~~~~---~~-~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~  266 (347)
T PRK10309        192 DINSEKLALAKSLGAMQTFNSRE---MS-APQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPR-AQLALVGTLHHDL  266 (347)
T ss_pred             CCCHHHHHHHHHcCCceEecCcc---cC-HHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCc
Confidence            99999999999999999998876   44 5567777766 898 9999999987799999999999 9999999764321


Q ss_pred             ceee-chHHHHhcCceEEecccCCCC--CCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          181 QLSL-SSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       181 ~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ..+. ....++.+++++.|++.+...  .+++++++++++.+|.++++++++++|+++++++|++.+.+++.. |+++++
T Consensus       267 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  346 (347)
T PRK10309        267 HLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI  346 (347)
T ss_pred             ccChhhhhHHhhcCcEEEEEeccccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence            1211 123467789999998654221  136788999999999998888999999999999999999888766 999976


Q ss_pred             C
Q 025101          257 G  257 (258)
Q Consensus       257 ~  257 (258)
                      .
T Consensus       347 ~  347 (347)
T PRK10309        347 P  347 (347)
T ss_pred             C
Confidence            3

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=3.8e-34  Score=238.50  Aligned_cols=246  Identities=26%  Similarity=0.355  Sum_probs=202.9

Q ss_pred             CCCCCccccCCCCceeeee-------c-----cccceeeeEEEecceEE-EcCCCCCccchhhcchhhhhhhhhhhhhcC
Q 025101            2 PRDQTSRFKDLRGETIHHF-------V-----SVSSFSEYTVLDIAHVV-KVDPTVPPNRACLLSCGVSTGVGAAWRTAN   68 (258)
Q Consensus         2 ~~~~~~~~~~~~G~~v~~~-------~-----~~g~~~~~~~v~~~~~~-~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~   68 (258)
                      .+||.|++| +.|.+.+.-       .     ..|+|+||+.+|+++++ ++|++++ .+++++..++++++++......
T Consensus        88 ~~Cg~C~~C-~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~~-~~~aal~epla~~~~~~a~~~~  165 (350)
T COG1063          88 IPCGHCRYC-RAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGID-EEAAALTEPLATAYHGHAERAA  165 (350)
T ss_pred             cCCCCChhH-hCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCCC-hhhhhhcChhhhhhhhhhhccC
Confidence            579999999 999986511       1     24899999999976555 5588875 4444555599999887445555


Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCC-CCCEE
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYC  146 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v  146 (258)
                      ..++.+|+|+|+|++|++++++++..|+++|++++.+++|++++++ .|++.+++..+   ++....+.+.+++ ++|++
T Consensus       166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~---~~~~~~~~~~t~g~g~D~v  242 (350)
T COG1063         166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE---DDAGAEILELTGGRGADVV  242 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc---ccHHHHHHHHhCCCCCCEE
Confidence            5666699999999999999999999999899999999999999999 66776666665   4677888899988 99999


Q ss_pred             EEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCc
Q 025101          147 FECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDK  226 (258)
Q Consensus       147 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  226 (258)
                      |||+|.+.++.++++.++++ |+++.+|....... .++...++.|++++.|+...  ..+.+++.+++++++|++++.+
T Consensus       243 ie~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~-~~~~~~~~~kel~l~gs~~~--~~~~~~~~~~~ll~~g~i~~~~  318 (350)
T COG1063         243 IEAVGSPPALDQALEALRPG-GTVVVVGVYGGEDI-PLPAGLVVSKELTLRGSLRP--SGREDFERALDLLASGKIDPEK  318 (350)
T ss_pred             EECCCCHHHHHHHHHHhcCC-CEEEEEeccCCccC-ccCHHHHHhcccEEEeccCC--CCcccHHHHHHHHHcCCCChhH
Confidence            99999988899999999999 99999998765432 56667789999999998421  2246899999999999999999


Q ss_pred             ccccccccccHHHHHHHHhcCCe--eEEEEee
Q 025101          227 FVTHEMKFEEINSAFDLLIKGKC--LRCVIWM  256 (258)
Q Consensus       227 ~~~~~~~~~~~~~a~~~~~~~~~--~k~vi~~  256 (258)
                      ++++.++++++++||+.+.+++.  .|+++.+
T Consensus       319 lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         319 LITHRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             ceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            99999999999999999987553  4999864

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=6.1e-34  Score=238.15  Aligned_cols=243  Identities=19%  Similarity=0.274  Sum_probs=198.9

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecce--EEE--cCCCCCcc-chhhcchhhhhhhhhhhhhcCCCCCCEEEE
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH--VVK--VDPTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVI   77 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~--~~~--~p~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI   77 (258)
                      ++++.+|+  +||+|+++   |+|+||+.+++..  +.+  +|++++++ +++++++++.|||+++.....+++|++|||
T Consensus        90 g~~v~~~~--~Gd~V~~~---~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV  164 (348)
T PLN03154         90 DSDDPNFK--PGDLISGI---TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFV  164 (348)
T ss_pred             ecCCCCCC--CCCEEEec---CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEE
Confidence            45667787  99999864   6899999998853  544  59999986 688899999999999877888999999999


Q ss_pred             Ecc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhh
Q 025101           78 FGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASL  155 (258)
Q Consensus        78 ~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~  155 (258)
                      +|+ |++|++++|+||.+|+ +|+++++++++.++++ ++|++.++|+++  ..++.+.+++.+++++|++||++|+.. 
T Consensus       165 ~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~~gvD~v~d~vG~~~-  240 (348)
T PLN03154        165 SAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNYKE--EPDLDAALKRYFPEGIDIYFDNVGGDM-  240 (348)
T ss_pred             ecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEECCC--cccHHHHHHHHCCCCcEEEEECCCHHH-
Confidence            997 9999999999999999 8999999999999987 799999999875  136777888776558999999999865 


Q ss_pred             HHHHHHhhhcCCceEEEecccCCCCc----eeechHHHHhcCceEEecccCCCC--CCCcHHHHHHHHHcCCCCCCcccc
Q 025101          156 VQEAYACCRKGWGKTIVLGVDQPGSQ----LSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVT  229 (258)
Q Consensus       156 ~~~~~~~l~~~~G~~v~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~  229 (258)
                      +..++++++++ |+++.+|...+...    ..++...++.+++++.|+..+.+.  ..+.++++++++++|++++  .+.
T Consensus       241 ~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~--~~~  317 (348)
T PLN03154        241 LDAALLNMKIH-GRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVY--IED  317 (348)
T ss_pred             HHHHHHHhccC-CEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccC--cee
Confidence            99999999999 99999996543210    012445567789999987643321  1245778999999997764  366


Q ss_pred             cccccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          230 HEMKFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       230 ~~~~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      .+|+++++.+|++.+++++.. |+|+++.
T Consensus       318 ~~~~L~~~~~A~~~l~~g~~~GKvVl~~~  346 (348)
T PLN03154        318 MSEGLESAPAALVGLFSGKNVGKQVIRVA  346 (348)
T ss_pred             cccCHHHHHHHHHHHHcCCCCceEEEEec
Confidence            789999999999999999887 9999875

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=1.1e-33  Score=237.04  Aligned_cols=245  Identities=21%  Similarity=0.292  Sum_probs=203.8

Q ss_pred             CCCCCccccCCCCceee-------eeccccceeeeEEEecceEEEcCC------CCCccchhhcchhhhhhhhhhhhhcC
Q 025101            2 PRDQTSRFKDLRGETIH-------HFVSVSSFSEYTVLDIAHVVKVDP------TVPPNRACLLSCGVSTGVGAAWRTAN   68 (258)
Q Consensus         2 ~~~~~~~~~~~~G~~v~-------~~~~~g~~~~~~~v~~~~~~~~p~------~~~~~~aa~~~~~~~ta~~~l~~~~~   68 (258)
                      .+|+.|.+| +.|...+       +....|+|+||+.+|++.++++|+      ++++++++.+++++.+||+++. ...
T Consensus        86 ~~cg~c~~c-~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~-~~~  163 (349)
T TIGR03201        86 IPCGECELC-KTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAV-QAG  163 (349)
T ss_pred             CCCCCChhh-hCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHH-hcC
Confidence            468888887 6666543       222358999999999999999999      8999999999999999999874 578


Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCC---
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GAD---  144 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d---  144 (258)
                      +++|++|+|+|+|++|++++|+|+..|+ +|+++++++++.++++++|++.++++.+.+.+++.+.+++.+++ ++|   
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~  242 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTG  242 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCc
Confidence            8999999999999999999999999999 89999999999999999999999987662223577778888876 776   


Q ss_pred             -EEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC
Q 025101          145 -YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       145 -~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                       +||||+|+...++.++++++++ |+++.+|....  ..+++...++.++.++.+++...   ..+++++++++++|.++
T Consensus       243 d~v~d~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~i~~g~i~  316 (349)
T TIGR03201       243 WKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMA--KTEYRLSNLMAFHARALGNWGCP---PDRYPAALDLVLDGKIQ  316 (349)
T ss_pred             CEEEECCCChHHHHHHHHHHhcC-CeEEEECcCCC--CcccCHHHHhhcccEEEEEecCC---HHHHHHHHHHHHcCCCC
Confidence             8999999988788999999999 99999997643  23455566677788888876332   45799999999999988


Q ss_pred             CCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          224 LDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       224 ~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +.++++ +|+++++++||+.+.+++.. |+++++
T Consensus       317 ~~~~i~-~~~l~~~~~A~~~~~~~~~~~k~~~~~  349 (349)
T TIGR03201       317 LGPFVE-RRPLDQIEHVFAAAHHHKLKRRAILTP  349 (349)
T ss_pred             cccceE-EecHHHHHHHHHHHHcCCccceEEecC
Confidence            877774 79999999999999988766 988763

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=9.8e-34  Score=230.37  Aligned_cols=225  Identities=19%  Similarity=0.286  Sum_probs=185.9

Q ss_pred             CCCCCccccCCCCceee-------ee-------ccccceeeeEEEecc-eEEEcCCCCCccchhhcchhhhhhhhhhhhh
Q 025101            2 PRDQTSRFKDLRGETIH-------HF-------VSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRT   66 (258)
Q Consensus         2 ~~~~~~~~~~~~G~~v~-------~~-------~~~g~~~~~~~v~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~   66 (258)
                      .+|+.|.+| +.|....       +.       ...|+|+||+++|+. .++++|+++++++++.+++++.|||+++ +.
T Consensus        38 ~~cg~C~~C-~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~  115 (280)
T TIGR03366        38 VPCGRCFRC-RRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EA  115 (280)
T ss_pred             CCCCCChhh-hCcCcccCCChhhcCcccccCCccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-Hh
Confidence            357788887 6665442       11       124899999999997 6999999999999999999999999987 44


Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCE
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADY  145 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~  145 (258)
                      ....+|++|||+|+|++|++++|+||.+|+++|++++++++|.++++++|++.++++.+     ..+.+++.+.+ ++|+
T Consensus       116 ~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-----~~~~~~~~~~~~g~d~  190 (280)
T TIGR03366       116 AGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEV-----LAERQGGLQNGRGVDV  190 (280)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchh-----hHHHHHHHhCCCCCCE
Confidence            55669999999999999999999999999955999999999999999999998888654     24556667666 8999


Q ss_pred             EEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcC--CCC
Q 025101          146 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK--ELE  223 (258)
Q Consensus       146 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~  223 (258)
                      +||++|.+..++.++++++++ |+++.+|........+++...++.|++++.|+..+.   .++++++++++.++  +++
T Consensus       191 vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~l~~~~~~~~  266 (280)
T TIGR03366       191 ALEFSGATAAVRACLESLDVG-GTAVLAGSVFPGGPVALDPEQVVRRWLTIRGVHNYE---PRHLDQAVRFLAANGQRFP  266 (280)
T ss_pred             EEECCCChHHHHHHHHHhcCC-CEEEEeccCCCCCceeeCHHHHHhCCcEEEecCCCC---HHHHHHHHHHHHhhCCCCC
Confidence            999999888799999999999 999999965433345677777888999999986433   46799999999974  677


Q ss_pred             CCcccccccccccH
Q 025101          224 LDKFVTHEMKFEEI  237 (258)
Q Consensus       224 ~~~~~~~~~~~~~~  237 (258)
                      +.++++++|+++++
T Consensus       267 ~~~~it~~~~l~~~  280 (280)
T TIGR03366       267 FEELVGKPFPLADV  280 (280)
T ss_pred             HHHHhhcccccccC
Confidence            77889999999874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=1e-32  Score=232.44  Aligned_cols=230  Identities=27%  Similarity=0.432  Sum_probs=193.7

Q ss_pred             ccceeeeEEEecc-eEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           23 VSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        23 ~g~~~~~~~v~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      .|+|+||++++++ .++++|++++.++++++++++.|||+++......++|++|||+|+|++|++++++|+.+|+++|++
T Consensus       128 ~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~  207 (361)
T cd08231         128 SGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIV  207 (361)
T ss_pred             CcccceEEEecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            4899999999996 799999999999999998899999999876666679999999999999999999999999977999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCC
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  180 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  180 (258)
                      +++++++.++++++|++.++++++.+..++...+.+.+++ ++|++|||+|+...+..++++++++ |+++.+|......
T Consensus       208 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~  286 (361)
T cd08231         208 IDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAG  286 (361)
T ss_pred             EcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC-CEEEEEcCCCCCC
Confidence            9999999999999999988888762222234577888877 8999999999866689999999999 9999999654333


Q ss_pred             ceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcC--CCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK--ELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      ..+++...++.+++++.+++...   .+++.++++++.++  .+++.++++++|+++++++||+.++++...|++|++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~~k~vi~~  361 (361)
T cd08231         287 TVPLDPERIVRKNLTIIGVHNYD---PSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTALKVVIDP  361 (361)
T ss_pred             ccccCHHHHhhcccEEEEcccCC---chhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCceEEEeCC
Confidence            44555556678899999886433   46789999999988  666777888999999999999999888766999864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=3.7e-33  Score=234.41  Aligned_cols=236  Identities=21%  Similarity=0.276  Sum_probs=191.1

Q ss_pred             CCCCccccCCCCceeee--------------eccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcC
Q 025101            3 RDQTSRFKDLRGETIHH--------------FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN   68 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~--------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~   68 (258)
                      +|+.|.+| +.|...+.              ....|+|+||+++|++.++++|+++++++++.+++.+.|||+++.....
T Consensus       102 ~Cg~C~~C-~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~  180 (360)
T PLN02586        102 SCKSCESC-DQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGM  180 (360)
T ss_pred             cCCCCccc-cCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcc
Confidence            46667777 66654421              1124899999999999999999999999999999999999998766666


Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~-~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      +++|++|||.|+|++|++++|+|+..|+ +|++++.++++ .+.++++|++.++++++   .   +.+++.++ ++|+||
T Consensus       181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~---~---~~~~~~~~-~~D~vi  252 (360)
T PLN02586        181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADSFLVSTD---P---EKMKAAIG-TMDYII  252 (360)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcEEEcCCC---H---HHHHhhcC-CCCEEE
Confidence            7899999999999999999999999999 78888777665 45668899999998765   2   24555444 699999


Q ss_pred             EecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcc
Q 025101          148 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF  227 (258)
Q Consensus       148 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  227 (258)
                      |++|.+.+++.++++++++ |+++.+|....  ...++...++.++..+.++..+.   ..+++++++++.+|++++.  
T Consensus       253 d~~g~~~~~~~~~~~l~~~-G~iv~vG~~~~--~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~li~~g~i~~~--  324 (360)
T PLN02586        253 DTVSAVHALGPLLGLLKVN-GKLITLGLPEK--PLELPIFPLVLGRKLVGGSDIGG---IKETQEMLDFCAKHNITAD--  324 (360)
T ss_pred             ECCCCHHHHHHHHHHhcCC-cEEEEeCCCCC--CCccCHHHHHhCCeEEEEcCcCC---HHHHHHHHHHHHhCCCCCc--
Confidence            9999876789999999999 99999996532  34556666677788888876443   3578999999999987643  


Q ss_pred             cccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          228 VTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       228 ~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      + ++|+++++++||+.+.+++.. |+++.+
T Consensus       325 ~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  353 (360)
T PLN02586        325 I-ELIRMDEINTAMERLAKSDVRYRFVIDV  353 (360)
T ss_pred             E-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            4 689999999999999998876 999876

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=5e-33  Score=234.41  Aligned_cols=217  Identities=24%  Similarity=0.346  Sum_probs=182.1

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcC-CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~-~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      .|+|+||+++|++.++++|+++++++++.+++++.|+|+++..... .++|++|+|.|+|++|++++|+|+.+|+ +|++
T Consensus       129 ~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~  207 (375)
T PLN02178        129 QGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTV  207 (375)
T ss_pred             CCccccEEEEchHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEE
Confidence            5899999999999999999999999999999999999998754432 3689999999999999999999999999 7988


Q ss_pred             EcCCcch-HHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCC
Q 025101          102 VDVISEK-FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  180 (258)
Q Consensus       102 ~~~~~~~-~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  180 (258)
                      +++++++ .++++++|+++++++++   .   +.+.+.++ ++|+||||+|.+.++..++++++++ |+++.+|....  
T Consensus       208 ~~~~~~~~~~~a~~lGa~~~i~~~~---~---~~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~vG~~~~--  277 (375)
T PLN02178        208 ISRSSEKEREAIDRLGADSFLVTTD---S---QKMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVS-GKLVALGLPEK--  277 (375)
T ss_pred             EeCChHHhHHHHHhCCCcEEEcCcC---H---HHHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCC-CEEEEEccCCC--
Confidence            8876554 67888999999998765   2   34555544 6999999999886689999999999 99999996532  


Q ss_pred             ceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ...++...++.+++++.|+..+.   .+++.++++++.+|++++.  + ++|+++++++||+.+.+++.. |+++.+
T Consensus       278 ~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  348 (375)
T PLN02178        278 PLDLPIFPLVLGRKMVGGSQIGG---MKETQEMLEFCAKHKIVSD--I-ELIKMSDINSAMDRLAKSDVRYRFVIDV  348 (375)
T ss_pred             CCccCHHHHHhCCeEEEEeCccC---HHHHHHHHHHHHhCCCccc--E-EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence            34566667778899999986543   3578999999999977644  5 679999999999999998876 999886

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=1.6e-32  Score=230.28  Aligned_cols=222  Identities=23%  Similarity=0.417  Sum_probs=194.7

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      +|+|+||+.++...++++|+++++++++.+ .++.|||+++ ...++++|++|+|+|+|++|++++|+++..|+++|+++
T Consensus       126 ~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~  203 (351)
T cd08233         126 GGGFAEYVVVPAYHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVS  203 (351)
T ss_pred             CCceeeEEEechHHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            589999999999999999999999998876 5788999987 78889999999999999999999999999999778999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      ++++++.++++++|++.++++++   .++.+.+++.+++ ++|++||++|....+..++++++++ |+++.+|...  ..
T Consensus       204 ~~~~~~~~~~~~~ga~~~i~~~~---~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~  277 (351)
T cd08233         204 EPSEARRELAEELGATIVLDPTE---VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWE--KP  277 (351)
T ss_pred             CCCHHHHHHHHHhCCCEEECCCc---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-CEEEEEccCC--CC
Confidence            99999999999999999999888   7888889888877 7999999999776689999999999 9999999764  34


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccH-HHHHHHHhcCCe--eEEEEe
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI-NSAFDLLIKGKC--LRCVIW  255 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~--~k~vi~  255 (258)
                      .+++...++.+++++.++....   +++++++++++++|.+++.++++++|+++++ ++|++.+.+++.  .|++|.
T Consensus       278 ~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~  351 (351)
T cd08233         278 ISFNPNDLVLKEKTLTGSICYT---REDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS  351 (351)
T ss_pred             CccCHHHHHhhCcEEEEEeccC---cchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence            4566667778899999886432   4789999999999998877888899999996 799999888774  498873

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=1.2e-32  Score=229.97  Aligned_cols=241  Identities=19%  Similarity=0.251  Sum_probs=195.4

Q ss_pred             CCCccccCCCCceeeeeccccceeeeEEEec-ceEEEcC-CCCCcc-chhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc
Q 025101            4 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AHVVKVD-PTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL   80 (258)
Q Consensus         4 ~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~-~~~~~~p-~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~   80 (258)
                      .++..|.  +||+|+++   |+|+||+++|+ ..++++| ++++++ +++++++++.|||+++.+..++++|++|||+|+
T Consensus        86 ~~v~~~~--vGd~V~~~---g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga  160 (338)
T cd08295          86 SGNPDFK--VGDLVWGF---TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAA  160 (338)
T ss_pred             cCCCCCC--CCCEEEec---CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecC
Confidence            4455677  99999965   68999999999 7999995 678876 789999999999999878889999999999997


Q ss_pred             -CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHH
Q 025101           81 -GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQE  158 (258)
Q Consensus        81 -g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~  158 (258)
                       |++|++++|+|+.+|+ +|+++++++++.+++++ +|+++++++.+  .+++.+.+++.+++++|++||++|+.. +..
T Consensus       161 ~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~~gvd~v~d~~g~~~-~~~  236 (338)
T cd08295         161 SGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFDDAFNYKE--EPDLDAALKRYFPNGIDIYFDNVGGKM-LDA  236 (338)
T ss_pred             ccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCceeEEcCC--cccHHHHHHHhCCCCcEEEEECCCHHH-HHH
Confidence             9999999999999999 89999999999999998 99999998754  136777787776558999999999855 899


Q ss_pred             HHHhhhcCCceEEEecccCCCCc----eeechHHHHhcCceEEecccCCCCC--CCcHHHHHHHHHcCCCCCCccccccc
Q 025101          159 AYACCRKGWGKTIVLGVDQPGSQ----LSLSSFEVLHSGKILMGSLFGGLKA--KSDIPILLKRYMDKELELDKFVTHEM  232 (258)
Q Consensus       159 ~~~~l~~~~G~~v~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~  232 (258)
                      ++++++++ |+++.+|.......    ...+...+..+++++.++.......  .+.+.++++++.+|.+++.  +...|
T Consensus       237 ~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~  313 (338)
T cd08295         237 VLLNMNLH-GRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV--EDIAD  313 (338)
T ss_pred             HHHHhccC-cEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--eeccc
Confidence            99999999 99999986543211    1123345566788888765433211  2346788999999977654  44569


Q ss_pred             ccccHHHHHHHHhcCCee-EEEEee
Q 025101          233 KFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       233 ~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +++++.+|++.+++++.. |+|+++
T Consensus       314 ~l~~~~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         314 GLESAPEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             CHHHHHHHHHHHhcCCCCceEEEEC
Confidence            999999999999988777 999864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=2.8e-32  Score=230.95  Aligned_cols=247  Identities=22%  Similarity=0.251  Sum_probs=189.5

Q ss_pred             CCCCCccccCCCCceeeee----------c-------cccceeeeEEEecc--eEEEcCCCCCc----cchhhcchhhhh
Q 025101            2 PRDQTSRFKDLRGETIHHF----------V-------SVSSFSEYTVLDIA--HVVKVDPTVPP----NRACLLSCGVST   58 (258)
Q Consensus         2 ~~~~~~~~~~~~G~~v~~~----------~-------~~g~~~~~~~v~~~--~~~~~p~~~~~----~~aa~~~~~~~t   58 (258)
                      .+||.|.+| +.|...+..          .       ..|+|+||+++|+.  .++++|++++.    .+++.+.+++.+
T Consensus        95 ~~Cg~C~~C-~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~t  173 (393)
T TIGR02819        95 IACGRCRNC-KEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPT  173 (393)
T ss_pred             cCCCCChHH-HCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCcccccccccceeeeccHHHH
Confidence            357777777 666654311          0       14899999999964  69999998653    346677778999


Q ss_pred             hhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHh
Q 025101           59 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        59 a~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ||+++ ...++++|++|||.|+|++|++++|+|+.+|++.+++++++++|.++++++|++. +++.+  ..++.+.+.+.
T Consensus       174 a~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~-v~~~~--~~~~~~~v~~~  249 (393)
T TIGR02819       174 GYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCET-VDLSK--DATLPEQIEQI  249 (393)
T ss_pred             HHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeE-EecCC--cccHHHHHHHH
Confidence            99986 4678899999999999999999999999999955666677888999999999974 44432  14677778888


Q ss_pred             cCC-CCCEEEEecCCh--------------hhHHHHHHhhhcCCceEEEecccCCCCc-----------eeechHHHHhc
Q 025101          139 TDG-GADYCFECVGLA--------------SLVQEAYACCRKGWGKTIVLGVDQPGSQ-----------LSLSSFEVLHS  192 (258)
Q Consensus       139 ~~~-~~d~v~d~~g~~--------------~~~~~~~~~l~~~~G~~v~~g~~~~~~~-----------~~~~~~~~~~~  192 (258)
                      +++ ++|++||++|.+              .+++.+++.++++ |+++.+|.......           .++.....+.+
T Consensus       250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  328 (393)
T TIGR02819       250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVG-GAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAK  328 (393)
T ss_pred             cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCC-CEEEEeeecCCcccccccccccccccccchHHhhcc
Confidence            776 899999999986              3699999999999 99999998632111           12223344556


Q ss_pred             CceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccc-cccccccHHHHHHHHhcCCeeEEEEeeC
Q 025101          193 GKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT-HEMKFEEINSAFDLLIKGKCLRCVIWMG  257 (258)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~k~vi~~~  257 (258)
                      ++++.+....   ..+.+.++++++.+|++++.++++ ++|+++++++||+.+.+++..|++++++
T Consensus       329 ~~~i~g~~~~---~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~~~Kvvi~~~  391 (393)
T TIGR02819       329 SHSFHTGQTP---VMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGAAKKFVIDPH  391 (393)
T ss_pred             CceEEeccCC---hhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCCceEEEEeCC
Confidence            6777664211   123347899999999999888777 6899999999999999887779999874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=9.5e-32  Score=226.60  Aligned_cols=227  Identities=41%  Similarity=0.807  Sum_probs=195.6

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|++|+.+++..++++|+++++++++++++++.+||+++.....+.+|++|||+|+|++|++++++++.+|+..|+++
T Consensus       135 ~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~  214 (365)
T cd05279         135 TSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAV  214 (365)
T ss_pred             cccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            47899999999999999999999999999999999999988888899999999999989999999999999999557888


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCc--cHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhh-cCCceEEEecccCCC
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDK--SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR-KGWGKTIVLGVDQPG  179 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~--~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~-~~~G~~v~~g~~~~~  179 (258)
                      ++++++.++++++|++.+++.++   .  ++.+.+.+++++++|++||++|....+..++++++ ++ |+++.+|.....
T Consensus       215 ~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~  290 (365)
T cd05279         215 DINKDKFEKAKQLGATECINPRD---QDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGG-GTSVVVGVPPSG  290 (365)
T ss_pred             eCCHHHHHHHHHhCCCeeccccc---ccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCC-CEEEEEecCCCC
Confidence            88999999999999999998876   4  67777888775589999999997666899999999 99 999999865433


Q ss_pred             CceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEE
Q 025101          180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  254 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi  254 (258)
                      ....++...+ .++.++.|+..+.+...+.+.++++++.++.+++.++++++|+++++++||+.+++++..|+++
T Consensus       291 ~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~  364 (365)
T cd05279         291 TEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESIRTIL  364 (365)
T ss_pred             CceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCceeeee
Confidence            3456666666 6678888876555555678999999999998887667889999999999999998877677776

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=9.8e-33  Score=227.37  Aligned_cols=237  Identities=22%  Similarity=0.342  Sum_probs=188.8

Q ss_pred             CCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhc------CCCCCCEEEEEcc-CHHHH
Q 025101           13 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA------NVEVGSTVVIFGL-GSIGL   85 (258)
Q Consensus        13 ~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~------~~~~g~~vlI~G~-g~~G~   85 (258)
                      .|+.+..+...|+|+||+++|+..++++|+++++++++++|.++.|||.++....      +.++|++|||+|+ |++|+
T Consensus        93 ~g~~~~~~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~  172 (347)
T KOG1198|consen   93 HGDAVVAFLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGT  172 (347)
T ss_pred             eeeEEeeccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHH
Confidence            5666666667799999999999999999999999999999999999999999888      8999999999976 89999


Q ss_pred             HHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhc
Q 025101           86 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK  165 (258)
Q Consensus        86 ~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~  165 (258)
                      +++|+|+++|+ ..+++++++++.++++++|+++++|+++   +++.+.+++.++++||+||||+|+.. ......++..
T Consensus       173 ~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy~~---~~~~e~~kk~~~~~~DvVlD~vg~~~-~~~~~~~l~~  247 (347)
T KOG1198|consen  173 AAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDYKD---ENVVELIKKYTGKGVDVVLDCVGGST-LTKSLSCLLK  247 (347)
T ss_pred             HHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecCCC---HHHHHHHHhhcCCCccEEEECCCCCc-cccchhhhcc
Confidence            99999999996 5666777999999999999999999999   99999999988449999999999986 7888888888


Q ss_pred             CCceEEEecccCCCCceeechHHHH----h---cCceEEeccc---CCCCCCCcHHHHHHHHHcCCCCCCcccccccccc
Q 025101          166 GWGKTIVLGVDQPGSQLSLSSFEVL----H---SGKILMGSLF---GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE  235 (258)
Q Consensus       166 ~~G~~v~~g~~~~~~~~~~~~~~~~----~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  235 (258)
                      . |+...++.... .........++    .   ....+.+...   ......+.+..+.++++++  ++++.+.+.||++
T Consensus       248 ~-g~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~g--kikp~i~~~~p~~  323 (347)
T KOG1198|consen  248 G-GGGAYIGLVGD-ELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKG--KIKPVIDSVYPFS  323 (347)
T ss_pred             C-CceEEEEeccc-cccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcC--cccCCcceeeeHH
Confidence            7 76555654332 11111111001    0   0111111110   0111246788999999999  6667799999999


Q ss_pred             cHHHHHHHHhcCCee-EEEEeeCC
Q 025101          236 EINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       236 ~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      ++.+|++.+.++... |+++.+.+
T Consensus       324 ~~~ea~~~~~~~~~~GK~vl~~~~  347 (347)
T KOG1198|consen  324 QAKEAFEKLEKSHATGKVVLEKDV  347 (347)
T ss_pred             HHHHHHHHHhhcCCcceEEEEecC
Confidence            999999999997777 99998753

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=5.5e-32  Score=224.76  Aligned_cols=210  Identities=17%  Similarity=0.181  Sum_probs=179.2

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+.+|++.++++|+++++++++.+++++.|||+++ ...++++|++|||+|+|++|++++|+|+..|+ +|+++
T Consensus       118 ~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~  195 (329)
T TIGR02822       118 DGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVM  195 (329)
T ss_pred             CCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEE
Confidence            48999999999999999999999999999999999999987 46789999999999999999999999999999 89999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      +++++|.++++++|+++++|..+   ..         .+++|+++++.+...++..++++++++ |+++.+|...+. ..
T Consensus       196 ~~~~~~~~~a~~~Ga~~vi~~~~---~~---------~~~~d~~i~~~~~~~~~~~~~~~l~~~-G~~v~~G~~~~~-~~  261 (329)
T TIGR02822       196 TRGAAARRLALALGAASAGGAYD---TP---------PEPLDAAILFAPAGGLVPPALEALDRG-GVLAVAGIHLTD-TP  261 (329)
T ss_pred             eCChHHHHHHHHhCCceeccccc---cC---------cccceEEEECCCcHHHHHHHHHhhCCC-cEEEEEeccCcc-CC
Confidence            99999999999999999987543   11         126899999888777799999999999 999999964332 22


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEE
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi  254 (258)
                      .++...++.+++++.++....   +.++.++++++.+|+++   +++++|+++++++||+.+.+++.. |+|+
T Consensus       262 ~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~---~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl  328 (329)
T TIGR02822       262 PLNYQRHLFYERQIRSVTSNT---RADAREFLELAAQHGVR---VTTHTYPLSEADRALRDLKAGRFDGAAVL  328 (329)
T ss_pred             CCCHHHHhhCCcEEEEeecCC---HHHHHHHHHHHHhCCCe---eEEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence            355556677889998876332   45688899999999775   357899999999999999998877 9887

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=2.9e-31  Score=223.64  Aligned_cols=228  Identities=32%  Similarity=0.583  Sum_probs=193.2

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|++|+.+++..++++|+++++++++.+++++.||+.++.....+++|++|||+|+|++|++++|+++..|+.+++++
T Consensus       138 ~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~  217 (365)
T cd08278         138 QSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAV  217 (365)
T ss_pred             ccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999988788889999999999889999999999999999668999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      +++++|.+.++++|++.++++++   .++.+.+.+.+++++|+++||+|.+..+..++++++++ |+++.+|........
T Consensus       218 ~~~~~k~~~~~~~g~~~~i~~~~---~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~  293 (365)
T cd08278         218 DIVDSRLELAKELGATHVINPKE---EDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEV  293 (365)
T ss_pred             eCCHHHHHHHHHcCCcEEecCCC---cCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccC-CEEEEeCcCCCCCcc
Confidence            99999999999999999999877   67888888877339999999999876689999999999 999999965322334


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEe
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  255 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  255 (258)
                      .++...++.++.++.++........+.++++++++.++.+++.+.+ ..|+++++++|++.+++++..|++|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~-~~~~l~~~~~a~~~~~~~~~~k~~~~  365 (365)
T cd08278         294 TLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLV-TFYPFEDINQAIADSESGKVIKPVLR  365 (365)
T ss_pred             ccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHhe-EEecHHHHHHHHHHHHCCCceEEEEC
Confidence            4555555577899888764433224567889999999987654444 58999999999999998877798874

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=1.4e-31  Score=222.26  Aligned_cols=240  Identities=15%  Similarity=0.174  Sum_probs=194.7

Q ss_pred             CCCCcc-ccCCCCceeeeecc-ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE--
Q 025101            3 RDQTSR-FKDLRGETIHHFVS-VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF--   78 (258)
Q Consensus         3 ~~~~~~-~~~~~G~~v~~~~~-~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~--   78 (258)
                      |.++.. |+  +||+|+++.+ .|+|+||+++|++.++++|+++++++++++++.+.|||.. ...... +++.++|+  
T Consensus        76 G~~v~~~~~--vGd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~-~~~~~~-~~~~vlv~~~  151 (324)
T cd08291          76 GGGPLAQSL--IGKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGM-LETARE-EGAKAVVHTA  151 (324)
T ss_pred             CCCccccCC--CCCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHH-HHhhcc-CCCcEEEEcc
Confidence            344553 77  9999997654 3899999999999999999999999999888889999864 445554 55666665  


Q ss_pred             ccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHH
Q 025101           79 GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQ  157 (258)
Q Consensus        79 G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~  157 (258)
                      |+|++|++++|+|+.+|+ +|+++++++++.++++++|+++++++++   +++.+.+++.+++ ++|++||++|+.. ..
T Consensus       152 g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~v~~~~~~~~~d~vid~~g~~~-~~  226 (324)
T cd08291         152 AASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGAEYVLNSSD---PDFLEDLKELIAKLNATIFFDAVGGGL-TG  226 (324)
T ss_pred             CccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEECCC---ccHHHHHHHHhCCCCCcEEEECCCcHH-HH
Confidence            459999999999999999 8999999999999999999999999887   7898999988877 8999999999877 77


Q ss_pred             HHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC---CCcHHHHHHHHHcCCCCCCccccccccc
Q 025101          158 EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKF  234 (258)
Q Consensus       158 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~  234 (258)
                      ..+++++++ |+++.+|.........++...++.+++++.++....+..   .+.+.++++++. +  .+++.++++|++
T Consensus       227 ~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~l  302 (324)
T cd08291         227 QILLAMPYG-STLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-T--ELKTTFASRYPL  302 (324)
T ss_pred             HHHHhhCCC-CEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-C--ccccceeeEEcH
Confidence            889999999 999999965432222244556677899998887554321   345777888887 6  455678899999


Q ss_pred             ccHHHHHHHHhcCCee-EEEEe
Q 025101          235 EEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       235 ~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      +++.+||+.+.+++.. |+++.
T Consensus       303 ~~~~~a~~~~~~~~~~Gkvv~~  324 (324)
T cd08291         303 ALTLEAIAFYSKNMSTGKKLLI  324 (324)
T ss_pred             HHHHHHHHHHHhCCCCCeEEeC
Confidence            9999999999887766 98873

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.6e-31  Score=224.52  Aligned_cols=218  Identities=22%  Similarity=0.316  Sum_probs=182.6

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+++|+..++++|+++++++++.+++++.|||+++......++|++++|+|+|++|++++|+||..|+ +|+++
T Consensus       132 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~  210 (357)
T PLN02514        132 QGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVI  210 (357)
T ss_pred             CCccccEEEEchHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEE
Confidence            48999999999999999999999999999999999999988666666899999999999999999999999999 78888


Q ss_pred             cCCcchHHH-HHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          103 DVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       103 ~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      ++++++.+. ++++|++.++++.+   .   +.+.+.+. ++|++|||+|...++..++++++++ |+++.+|....  .
T Consensus       211 ~~~~~~~~~~~~~~Ga~~~i~~~~---~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~  280 (357)
T PLN02514        211 SSSDKKREEALEHLGADDYLVSSD---A---AEMQEAAD-SLDYIIDTVPVFHPLEPYLSLLKLD-GKLILMGVINT--P  280 (357)
T ss_pred             eCCHHHHHHHHHhcCCcEEecCCC---h---HHHHHhcC-CCcEEEECCCchHHHHHHHHHhccC-CEEEEECCCCC--C
Confidence            888777654 46799988877654   2   23444443 6999999999876689999999999 99999997643  3


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      .+++...++.+++++.|+..+.   ..+++++++++.+|.+  .+++ ++|+++++++||+.+++++.. |+++.++
T Consensus       281 ~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~~~~g~l--~~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~~  351 (357)
T PLN02514        281 LQFVTPMLMLGRKVITGSFIGS---MKETEEMLEFCKEKGL--TSMI-EVVKMDYVNTAFERLEKNDVRYRFVVDVA  351 (357)
T ss_pred             CcccHHHHhhCCcEEEEEecCC---HHHHHHHHHHHHhCCC--cCcE-EEEcHHHHHHHHHHHHcCCCceeEEEEcc
Confidence            4566667778899999987554   3578999999999965  4456 689999999999999998876 9999875

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=2.6e-31  Score=220.74  Aligned_cols=235  Identities=20%  Similarity=0.243  Sum_probs=190.4

Q ss_pred             cccCCCCceeeeeccccceeeeEEEecceEEEc----CCCCCccch-hhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            8 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV----DPTVPPNRA-CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         8 ~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~----p~~~~~~~a-a~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      .|.  +||+|+++   ++|++|++++.+.+.++    |++++++++ +++++++.|||+++.+..++++|++|||+|+ |
T Consensus        75 ~~~--~GdrV~~~---~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g  149 (325)
T TIGR02825        75 ALP--KGTIVLAS---PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAG  149 (325)
T ss_pred             CCC--CCCEEEEe---cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCcc
Confidence            466  99999975   46999999999988887    899999987 6788899999999888899999999999985 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCc-cHHHHHHHhcCCCCCEEEEecCChhhHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK-SVSQIIIDMTDGGADYCFECVGLASLVQEAY  160 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~-~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~  160 (258)
                      ++|++++|+||..|+ +|+++++++++.++++++|++.++++++   . ++.+.++...++++|++||++|++. +..++
T Consensus       150 ~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~---~~~~~~~~~~~~~~gvdvv~d~~G~~~-~~~~~  224 (325)
T TIGR02825       150 AVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT---VKSLEETLKKASPDGYDCYFDNVGGEF-SNTVI  224 (325)
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc---cccHHHHHHHhCCCCeEEEEECCCHHH-HHHHH
Confidence            999999999999999 8999999999999999999999999876   3 4555566655448999999999876 89999


Q ss_pred             HhhhcCCceEEEecccCCCC---cee--echHHHHhcCceEEecccCCCCC---CCcHHHHHHHHHcCCCCCCccccccc
Q 025101          161 ACCRKGWGKTIVLGVDQPGS---QLS--LSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEM  232 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~  232 (258)
                      ++++++ |+++.+|......   ..+  .....+..+++++.++....+..   .+.++++++++.+|++++.  +...|
T Consensus       225 ~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~  301 (325)
T TIGR02825       225 GQMKKF-GRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYK--EYVIE  301 (325)
T ss_pred             HHhCcC-cEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccc--eeccc
Confidence            999999 9999998643211   111  12334556678887765432211   2457889999999987765  44678


Q ss_pred             ccccHHHHHHHHhcCCee-EEEEe
Q 025101          233 KFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       233 ~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      +++++.+|++.+++++.. |+|++
T Consensus       302 ~l~~~~~A~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       302 GFENMPAAFMGMLKGENLGKTIVK  325 (325)
T ss_pred             cHHHHHHHHHHHhcCCCCCeEEeC
Confidence            999999999999988776 88863

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=9e-31  Score=221.08  Aligned_cols=231  Identities=42%  Similarity=0.763  Sum_probs=191.4

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||++++++.++++|+++++++++++++++.+||+++....++++|++|+|+|+|++|++++++++..|+.+|+++
T Consensus       142 ~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~  221 (373)
T cd08299         142 TSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAV  221 (373)
T ss_pred             CCcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            58999999999999999999999999999999999999988788899999999999999999999999999998679999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhh-hcCCceEEEecccCCCCc
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC-RKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~~~~  181 (258)
                      ++++++.+.++++|++++++..+ ..+++.+.+.+++++++|+++||+|.+..+..++..+ +++ |+++.+|.......
T Consensus       222 ~~~~~~~~~a~~lGa~~~i~~~~-~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~-G~~v~~g~~~~~~~  299 (373)
T cd08299         222 DINKDKFAKAKELGATECINPQD-YKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGY-GVSVIVGVPPSSQN  299 (373)
T ss_pred             cCCHHHHHHHHHcCCceEecccc-cchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCC-CEEEEEccCCCCce
Confidence            99999999999999999998765 0123666777766568999999999866677767765 568 99999997643333


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      .++.... +.++.++.++..+.+..+..+.++++.+.++.+++.+++++.|+++++++|++.+++++..|+++.+
T Consensus       300 ~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~~k~~~~~  373 (373)
T cd08299         300 LSINPML-LLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKSIRTVLTF  373 (373)
T ss_pred             eecCHHH-HhcCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcceEEEeC
Confidence            4444432 3457888888766654456788888888888777777788999999999999999887766888864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=100.00  E-value=2.6e-31  Score=206.69  Aligned_cols=242  Identities=19%  Similarity=0.215  Sum_probs=203.9

Q ss_pred             CCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCC--ccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-
Q 025101            4 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP--PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-   80 (258)
Q Consensus         4 ~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~--~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-   80 (258)
                      +.+..|+  +||.|.+..   +|+||.+++.+.+.|++++.-  +.....+..+..|||.+|.+...+++|++|+|.|+ 
T Consensus        86 S~~~~f~--~GD~V~~~~---GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAa  160 (340)
T COG2130          86 SNHPGFQ--PGDIVVGVS---GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAA  160 (340)
T ss_pred             cCCCCCC--CCCEEEecc---cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecc
Confidence            4567798  999999764   699999999999999975422  22344467799999999999999999999999986 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHH
Q 025101           81 GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEA  159 (258)
Q Consensus        81 g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~  159 (258)
                      |++|..+.|+||..|+ +|+.++.+++|.+++++ +|.+..|||++   +++.+.+++.++.++|+.||++|++- ++..
T Consensus       161 GaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~---~d~~~~L~~a~P~GIDvyfeNVGg~v-~DAv  235 (340)
T COG2130         161 GAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA---EDFAQALKEACPKGIDVYFENVGGEV-LDAV  235 (340)
T ss_pred             cccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc---ccHHHHHHHHCCCCeEEEEEcCCchH-HHHH
Confidence            9999999999999999 99999999999999988 99999999999   89999999999999999999999988 9999


Q ss_pred             HHhhhcCCceEEEecccCCC--Cce---eechHHHHhcCceEEecccCCCC---CCCcHHHHHHHHHcCCCCCCcccccc
Q 025101          160 YACCRKGWGKTIVLGVDQPG--SQL---SLSSFEVLHSGKILMGSLFGGLK---AKSDIPILLKRYMDKELELDKFVTHE  231 (258)
Q Consensus       160 ~~~l~~~~G~~v~~g~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~  231 (258)
                      +..|+.. +|++.||..+.-  ...   +-....++.+.+++.|+......   ..+..+++.+++.+|+++...  +-+
T Consensus       236 ~~~ln~~-aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~e--ti~  312 (340)
T COG2130         236 LPLLNLF-ARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRE--TIV  312 (340)
T ss_pred             HHhhccc-cceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEe--eeh
Confidence            9999999 999999965531  111   12234467789999999863321   124567888999999888775  445


Q ss_pred             cccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          232 MKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       232 ~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      -.++.+.+||..+-++++. |.|+++.+
T Consensus       313 dGlEnaP~Af~gLl~G~N~GK~vvKv~~  340 (340)
T COG2130         313 DGLENAPEAFIGLLSGKNFGKLVVKVAD  340 (340)
T ss_pred             hhhhccHHHHHHHhcCCccceEEEEecC
Confidence            6799999999999999998 99999864

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=5.2e-31  Score=221.44  Aligned_cols=219  Identities=24%  Similarity=0.303  Sum_probs=171.1

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhh------hcCCCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR------TANVEVGSTVVIFGLGSIGLAVAEGARLCGA   96 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~------~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~   96 (258)
                      .|+|+||+++|++.++++|++++ +++ ++..++.++++++..      ..++++|++|+|+|+|++|++++|+||..|+
T Consensus       120 ~G~~aey~~~~~~~~~~~P~~~~-~~a-~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~  197 (355)
T cd08230         120 HGFMREYFVDDPEYLVKVPPSLA-DVG-VLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF  197 (355)
T ss_pred             CccceeEEEeccccEEECCCCCC-cce-eecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            48899999999999999999998 444 444466665554322      2235789999999999999999999999999


Q ss_pred             CeEEEEcC---CcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEe
Q 025101           97 TRIIGVDV---ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus        97 ~~v~~~~~---~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                       +|+++++   +++|.+.++++|++. +++.+   +++.+ ..  ..+++|+||||+|.+..+..+++.++++ |+++.+
T Consensus       198 -~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~---~~~~~-~~--~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~  268 (355)
T cd08230         198 -EVYVLNRRDPPDPKADIVEELGATY-VNSSK---TPVAE-VK--LVGEFDLIIEATGVPPLAFEALPALAPN-GVVILF  268 (355)
T ss_pred             -eEEEEecCCCCHHHHHHHHHcCCEE-ecCCc---cchhh-hh--hcCCCCEEEECcCCHHHHHHHHHHccCC-cEEEEE
Confidence             8999987   678999999999986 56665   44433 21  1238999999999877789999999999 999999


Q ss_pred             cccCCCCceeec----hHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCC----CCCcccccccccccHHHHHHHHh
Q 025101          174 GVDQPGSQLSLS----SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL----ELDKFVTHEMKFEEINSAFDLLI  245 (258)
Q Consensus       174 g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~a~~~~~  245 (258)
                      |...+....+++    ...++.|++++.|+..+.   +++++++++++.++.+    .++++++++|+++++.+||+.++
T Consensus       269 G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~  345 (355)
T cd08230         269 GVPGGGREFEVDGGELNRDLVLGNKALVGSVNAN---KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKP  345 (355)
T ss_pred             ecCCCCCccccChhhhhhhHhhcCcEEEEecCCc---hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcc
Confidence            976542334444    345677899999986433   4678999999988862    35677889999999999999887


Q ss_pred             cCCeeEEEEee
Q 025101          246 KGKCLRCVIWM  256 (258)
Q Consensus       246 ~~~~~k~vi~~  256 (258)
                      ++. .|++|++
T Consensus       346 ~~~-~K~v~~~  355 (355)
T cd08230         346 DGE-IKVVIEW  355 (355)
T ss_pred             cCC-eEEEeeC
Confidence            553 5999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.98  E-value=1.1e-30  Score=217.22  Aligned_cols=237  Identities=20%  Similarity=0.223  Sum_probs=192.2

Q ss_pred             ccccCCCCceeeeeccccceeeeEEEecc---eEEEcCCCCC--c---cchhhcchhhhhhhhhhhhhcCCCCCCEEEEE
Q 025101            7 SRFKDLRGETIHHFVSVSSFSEYTVLDIA---HVVKVDPTVP--P---NRACLLSCGVSTGVGAAWRTANVEVGSTVVIF   78 (258)
Q Consensus         7 ~~~~~~~G~~v~~~~~~g~~~~~~~v~~~---~~~~~p~~~~--~---~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~   78 (258)
                      ..|.  +||+|+++   ++|++|+++++.   .++++|++++  +   ..++++++++.|||+++.+..++++|++|||+
T Consensus        76 ~~~~--~Gd~V~~~---~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~  150 (329)
T cd08294          76 SKFP--VGTIVVAS---FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVN  150 (329)
T ss_pred             CCCC--CCCEEEee---CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEe
Confidence            3566  99999964   579999999999   9999999988  2   22346778999999998888899999999999


Q ss_pred             cc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHH
Q 025101           79 GL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQ  157 (258)
Q Consensus        79 G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~  157 (258)
                      |+ |++|++++|+|+..|+ +|+++++++++.++++++|+++++++++   +++.+.+++.+++++|++||++|+.. +.
T Consensus       151 ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~~---~~~~~~v~~~~~~gvd~vld~~g~~~-~~  225 (329)
T cd08294         151 GAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYKT---VSLEEALKEAAPDGIDCYFDNVGGEF-SS  225 (329)
T ss_pred             cCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHCCCCcEEEEECCCHHH-HH
Confidence            85 9999999999999999 8999999999999999999999999987   78888888877668999999999855 89


Q ss_pred             HHHHhhhcCCceEEEecccCCCC---c--eeechHHHHhcCceEEecccCCCC--CCCcHHHHHHHHHcCCCCCCccccc
Q 025101          158 EAYACCRKGWGKTIVLGVDQPGS---Q--LSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTH  230 (258)
Q Consensus       158 ~~~~~l~~~~G~~v~~g~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~  230 (258)
                      .++++++++ |+++.+|......   .  .......+..+++++.++....+.  ..+.++++++++.+|.+++.  ...
T Consensus       226 ~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~  302 (329)
T cd08294         226 TVLSHMNDF-GRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYR--EHV  302 (329)
T ss_pred             HHHHhhccC-CEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCC--ccc
Confidence            999999999 9999998532211   1  112233456678888886543321  12346678899999977755  335


Q ss_pred             ccccccHHHHHHHHhcCCee-EEEEee
Q 025101          231 EMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       231 ~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +|+++++.+|++.+++++.. |+++++
T Consensus       303 ~~~l~~~~~A~~~~~~~~~~gkvvv~~  329 (329)
T cd08294         303 TEGFENMPQAFIGMLKGENTGKAIVKV  329 (329)
T ss_pred             ccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            68999999999999988776 998864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.98  E-value=5.9e-31  Score=216.75  Aligned_cols=225  Identities=16%  Similarity=0.182  Sum_probs=176.4

Q ss_pred             CCCCccccCCCCceeeeec---------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCC
Q 025101            3 RDQTSRFKDLRGETIHHFV---------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGS   73 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~   73 (258)
                      |.++ .|+  +||+|+...         ..|+|+||+++|++.++++|++++++. ++++ ++.|||+++.. . ..+++
T Consensus        74 G~~v-~~~--vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~  146 (308)
T TIGR01202        74 GPDT-GFR--PGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAG-A-EVKVL  146 (308)
T ss_pred             cCCC-CCC--CCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCC
Confidence            3444 577  999998532         148999999999999999999998754 5554 57899998743 3 33688


Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCCh
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      +++|+|+|++|++++|+||.+|++.|++++.++++.+.++++   .++|+.+   .         .+.++|+||||+|++
T Consensus       147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i~~~~---~---------~~~g~Dvvid~~G~~  211 (308)
T TIGR01202       147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVLDPEK---D---------PRRDYRAIYDASGDP  211 (308)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cccChhh---c---------cCCCCCEEEECCCCH
Confidence            999999999999999999999995566777777776665543   4555433   1         123799999999998


Q ss_pred             hhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccc
Q 025101          154 SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK  233 (258)
Q Consensus       154 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  233 (258)
                      ..++.+++.++++ |+++.+|....  ..+++...++.|++++.++....   .++++++++++.+|.+++.++++++|+
T Consensus       212 ~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~g~i~~~~~it~~~~  285 (308)
T TIGR01202       212 SLIDTLVRRLAKG-GEIVLAGFYTE--PVNFDFVPAFMKEARLRIAAEWQ---PGDLHAVRELIESGALSLDGLITHQRP  285 (308)
T ss_pred             HHHHHHHHhhhcC-cEEEEEeecCC--CcccccchhhhcceEEEEecccc---hhHHHHHHHHHHcCCCChhhccceeec
Confidence            7789999999999 99999997543  34455556677889988875332   467999999999999998889999999


Q ss_pred             cccHHHHHHHHhcCCe-eEEEEe
Q 025101          234 FEEINSAFDLLIKGKC-LRCVIW  255 (258)
Q Consensus       234 ~~~~~~a~~~~~~~~~-~k~vi~  255 (258)
                      ++++++||+.+.++.. .|++++
T Consensus       286 l~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       286 ASDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             HHHHHHHHHHHhcCcCceEEEeC
Confidence            9999999998766544 499874

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.98  E-value=4.6e-30  Score=215.46  Aligned_cols=227  Identities=27%  Similarity=0.409  Sum_probs=186.4

Q ss_pred             ccceeeeEEEecc--eEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEE
Q 025101           23 VSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII  100 (258)
Q Consensus        23 ~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~  100 (258)
                      .|+|+||+++|..  .++++|+++++++++.++.++.|||+++ ....+++|++|||+|+|++|++++|+++..|+..|+
T Consensus       117 ~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~  195 (351)
T cd08285         117 DGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRII  195 (351)
T ss_pred             CcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence            5899999999974  8999999999999999988999999984 778899999999999899999999999999996688


Q ss_pred             EEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          101 GVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       101 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      ++++++++.+.++++|++.++++++   .++.+.+.+.+++ ++|++||++|+...+..++++++++ |+++.+|.....
T Consensus       196 ~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~  271 (351)
T cd08285         196 AVGSRPNRVELAKEYGATDIVDYKN---GDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGED  271 (351)
T ss_pred             EEeCCHHHHHHHHHcCCceEecCCC---CCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCCC
Confidence            9999999999999999999999887   7788888887766 8999999999877689999999999 999999866532


Q ss_pred             Cceeech--HHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcc-cccccccccHHHHHHHHhcCCe--eEEEE
Q 025101          180 SQLSLSS--FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF-VTHEMKFEEINSAFDLLIKGKC--LRCVI  254 (258)
Q Consensus       180 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~--~k~vi  254 (258)
                      ....++.  .....+..++.+.....  ..+.++++++++.+|.+++... ..+.++++++++|++.+++++.  .|++|
T Consensus       272 ~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~  349 (351)
T cd08285         272 DYLPIPREEWGVGMGHKTINGGLCPG--GRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVI  349 (351)
T ss_pred             ceeecChhhhhhhccccEEEEeecCC--ccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEE
Confidence            2233332  11223455665543211  2467899999999998887443 4456899999999999988763  49998


Q ss_pred             ee
Q 025101          255 WM  256 (258)
Q Consensus       255 ~~  256 (258)
                      ++
T Consensus       350 ~~  351 (351)
T cd08285         350 IF  351 (351)
T ss_pred             eC
Confidence            74

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.98  E-value=1.1e-30  Score=218.07  Aligned_cols=214  Identities=21%  Similarity=0.266  Sum_probs=168.2

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhh--hcCCCCCCEEEEEccCHHHHHHHHHHHH-cCCCeE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRI   99 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~g~~vlI~G~g~~G~~a~~l~~~-~g~~~v   99 (258)
                      .|+|+||+++|++.++++|+++++++|+++. +++++|+++..  ...+++|++|||+|+|++|++++|+++. .|..+|
T Consensus       114 ~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~v  192 (341)
T cd08237         114 DGFMQDYVFLPPDRLVKLPDNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKL  192 (341)
T ss_pred             CCceEEEEEEchHHeEECCCCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcE
Confidence            3889999999999999999999999887665 88899998743  3456889999999999999999999986 665589


Q ss_pred             EEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCC---hhhHHHHHHhhhcCCceEEEecc
Q 025101          100 IGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL---ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       100 ~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ++++++++|++++++.+++..++       ++       ... ++|+|||++|.   +.++..+++.++++ |+++.+|.
T Consensus       193 i~~~~~~~k~~~a~~~~~~~~~~-------~~-------~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~-G~iv~~G~  257 (341)
T cd08237         193 VVFGKHQEKLDLFSFADETYLID-------DI-------PEDLAVDHAFECVGGRGSQSAINQIIDYIRPQ-GTIGLMGV  257 (341)
T ss_pred             EEEeCcHhHHHHHhhcCceeehh-------hh-------hhccCCcEEEECCCCCccHHHHHHHHHhCcCC-cEEEEEee
Confidence            99999999999998876643321       11       112 69999999994   45689999999999 99999996


Q ss_pred             cCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcC---CCCCCccccccccccc---HHHHHHHHhcCCe
Q 025101          176 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK---ELELDKFVTHEMKFEE---INSAFDLLIKGKC  249 (258)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~  249 (258)
                      ...  +.+++...++.+++++.|+..+.   ..+++++++++.++   ..++.++++++|++++   +.+||+...++..
T Consensus       258 ~~~--~~~~~~~~~~~k~~~i~g~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~  332 (341)
T cd08237         258 SEY--PVPINTRMVLEKGLTLVGSSRST---REDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSW  332 (341)
T ss_pred             cCC--CcccCHHHHhhCceEEEEecccC---HHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCc
Confidence            532  34566667788899999986432   45789999999998   3467788999999865   4555554444434


Q ss_pred             eEEEEeeC
Q 025101          250 LRCVIWMG  257 (258)
Q Consensus       250 ~k~vi~~~  257 (258)
                      .|+|+.++
T Consensus       333 gKvvi~~~  340 (341)
T cd08237         333 GKTVMEWE  340 (341)
T ss_pred             ceEEEEee
Confidence            49999874

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.98  E-value=3.2e-30  Score=214.08  Aligned_cols=241  Identities=15%  Similarity=0.160  Sum_probs=201.5

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |.++..++  +||+|+++...|+|++|+.+++..++++|+++++++++.+++.+.+||+++ ...++.+|++|||+|+ |
T Consensus        74 G~~v~~~~--~Gd~V~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g  150 (324)
T cd08292          74 GEGVKGLQ--VGQRVAVAPVHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGG  150 (324)
T ss_pred             CCCCCCCC--CCCEEEeccCCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEccccc
Confidence            34555677  999999775579999999999999999999999999999998899999986 5688999999999986 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAY  160 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~  160 (258)
                      .+|++++|+|+.+|+ +++++++++++.+.++++|++.+++.++   .++.+.+.+.+++ ++|+|||++|+.. ...++
T Consensus       151 ~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~d~~g~~~-~~~~~  225 (324)
T cd08292         151 AVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVVSTEQ---PGWQDKVREAAGGAPISVALDSVGGKL-AGELL  225 (324)
T ss_pred             HHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEEcCCC---chHHHHHHHHhCCCCCcEEEECCCChh-HHHHH
Confidence            999999999999999 8999998999999988899988998887   7888889998887 9999999999876 88999


Q ss_pred             HhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCC-------CCCcHHHHHHHHHcCCCCCCcccccccc
Q 025101          161 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK-------AKSDIPILLKRYMDKELELDKFVTHEMK  233 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~  233 (258)
                      ++++++ |+++.+|.... ...+++....+.++.++.++....+.       ....+.++++++.+|.+++.  +.+.|+
T Consensus       226 ~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~  301 (324)
T cd08292         226 SLLGEG-GTLVSFGSMSG-EPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFD  301 (324)
T ss_pred             HhhcCC-cEEEEEecCCC-CCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEec
Confidence            999999 99999986532 23445555566789999887644321       12357889999999977654  468899


Q ss_pred             cccHHHHHHHHhcCCee-EEEEe
Q 025101          234 FEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       234 ~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      ++++.+|++.+.++... |++++
T Consensus       302 ~~~~~~a~~~~~~~~~~~kvvv~  324 (324)
T cd08292         302 LGDAAKAAAASMRPGRAGKVLLR  324 (324)
T ss_pred             HHHHHHHHHHHHcCCCCceEEeC
Confidence            99999999998877666 88763

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.97  E-value=4.2e-30  Score=219.54  Aligned_cols=246  Identities=18%  Similarity=0.209  Sum_probs=192.9

Q ss_pred             CCCCc-cccCCCCceeeeec----------------cccceeeeEEEecc----eEEEcCCCCCccchhhcch--hhhhh
Q 025101            3 RDQTS-RFKDLRGETIHHFV----------------SVSSFSEYTVLDIA----HVVKVDPTVPPNRACLLSC--GVSTG   59 (258)
Q Consensus         3 ~~~~~-~~~~~~G~~v~~~~----------------~~g~~~~~~~v~~~----~~~~~p~~~~~~~aa~~~~--~~~ta   59 (258)
                      |+++. +|+  +||+|+...                ..|+|+||+++|++    .++++|+++++++++.+..  ...++
T Consensus        78 G~~v~~~~~--vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~  155 (410)
T cd08238          78 GKKWQGKYK--PGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGA  155 (410)
T ss_pred             CCCccCCCC--CCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHH
Confidence            44555 477  999997531                24899999999987    6899999999999886521  11223


Q ss_pred             hhhh--------hhhcCCCCCCEEEEEc-cCHHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHhc--------CCc-e
Q 025101           60 VGAA--------WRTANVEVGSTVVIFG-LGSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKRF--------GVT-E  119 (258)
Q Consensus        60 ~~~l--------~~~~~~~~g~~vlI~G-~g~~G~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~~~--------g~~-~  119 (258)
                      +.++        .+..++++|++|+|+| +|++|++++|+|+.+|  +.+|++++++++|.++++++        |++ .
T Consensus       156 ~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~  235 (410)
T cd08238         156 YTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELL  235 (410)
T ss_pred             hhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEE
Confidence            3332        2456789999999998 5999999999999875  45799999999999999997        766 5


Q ss_pred             EEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC-CCCceeechHHHHhcCceEE
Q 025101          120 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ-PGSQLSLSSFEVLHSGKILM  197 (258)
Q Consensus       120 vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~  197 (258)
                      ++++++  .+++.+.+++.+++ ++|++||++|.+.++..++++++++ |+++.++... .....+++...++.+++++.
T Consensus       236 ~i~~~~--~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~-G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~  312 (410)
T cd08238         236 YVNPAT--IDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPD-GCLNFFAGPVDKNFSAPLNFYNVHYNNTHYV  312 (410)
T ss_pred             EECCCc--cccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccC-CeEEEEEccCCCCccccccHHHhhhcCcEEE
Confidence            677653  14677888888877 8999999999877799999999998 8877664322 22224566667788899999


Q ss_pred             ecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          198 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      |+..+.   +.+++++++++.+|++++.++++++|+++++.+|++.+. ++.. |+|+.++
T Consensus       313 g~~~~~---~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl~~~  369 (410)
T cd08238         313 GTSGGN---TDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGGKKLIYTQ  369 (410)
T ss_pred             EeCCCC---HHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCceEEEECC
Confidence            986433   467999999999999998889999999999999999998 4444 9999864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.97  E-value=4.1e-30  Score=215.30  Aligned_cols=243  Identities=20%  Similarity=0.276  Sum_probs=186.6

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccc----hhhcchhhhhhhhhhhhhcCCCCC--CEEE
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVG--STVV   76 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~g--~~vl   76 (258)
                      |.++..|+  +||+|+++.  ++|+||+++|++.++++|+++++++    +++++.++.|||+++.+..++++|  ++||
T Consensus        84 G~~v~~~~--~Gd~V~~~~--~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~Vl  159 (345)
T cd08293          84 ESKHQKFA--VGDIVTSFN--WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMV  159 (345)
T ss_pred             ccCCCCCC--CCCEEEecC--CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEE
Confidence            45667787  999998652  6899999999999999999865433    445677899999998777788876  9999


Q ss_pred             EEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChh
Q 025101           77 IFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS  154 (258)
Q Consensus        77 I~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~  154 (258)
                      |+|+ |++|++++|+|+.+|+.+|+++++++++.+++++ +|++.++++++   +++.+.+++.+++++|++||++|+..
T Consensus       160 I~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~---~~~~~~i~~~~~~gvd~vid~~g~~~  236 (345)
T cd08293         160 VSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT---DNVAERLRELCPEGVDVYFDNVGGEI  236 (345)
T ss_pred             EECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC---CCHHHHHHHHCCCCceEEEECCCcHH
Confidence            9987 9999999999999998569999999999999876 99999999887   78888888887668999999999876


Q ss_pred             hHHHHHHhhhcCCceEEEecccCCC-Cce----eec--hHHH-HhcCceEEecccCCCC--CCCcHHHHHHHHHcCCCCC
Q 025101          155 LVQEAYACCRKGWGKTIVLGVDQPG-SQL----SLS--SFEV-LHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELEL  224 (258)
Q Consensus       155 ~~~~~~~~l~~~~G~~v~~g~~~~~-~~~----~~~--~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~  224 (258)
                       +..++++++++ |+++.+|..... ...    .+.  ...+ ..+++++.+.......  ..+.++++++++.+|.+++
T Consensus       237 -~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~  314 (345)
T cd08293         237 -SDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKV  314 (345)
T ss_pred             -HHHHHHHhccC-CEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCccc
Confidence             79999999999 999999853211 101    111  1111 2234443333211111  1234667888999997765


Q ss_pred             CcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          225 DKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       225 ~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      .  ....++++++++|++.+.+++.. |+++++
T Consensus       315 ~--~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         315 K--ETVYEGLENAGEAFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             e--eEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence            4  33456999999999999988766 999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.97  E-value=1.4e-29  Score=213.43  Aligned_cols=229  Identities=46%  Similarity=0.776  Sum_probs=193.7

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      ..|+|++|+.++++.++++|+++++++++.+++++.+||.++....++.+|++|||+|+|++|++++++++..|+.+|++
T Consensus       133 ~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~  212 (363)
T cd08279         133 GLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIA  212 (363)
T ss_pred             cCccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence            35899999999999999999999999999999999999998888889999999999988999999999999999945999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCC
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  180 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  180 (258)
                      +++++++.+.++++|++++++.++   .++...+.++.++ ++|+++|++++...+..++++++++ |+++.+|......
T Consensus       213 ~~~~~~~~~~~~~~g~~~vv~~~~---~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~  288 (363)
T cd08279         213 VDPVPEKLELARRFGATHTVNASE---DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGE  288 (363)
T ss_pred             EcCCHHHHHHHHHhCCeEEeCCCC---ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcC-CeEEEEecCCCCc
Confidence            999999999999999989998887   6788888888765 8999999999766689999999999 9999998654323


Q ss_pred             ceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEE
Q 025101          181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  254 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi  254 (258)
                      ...++...+..++..+.++..+.....+.++++++++.++.+.+.+.++++|+++++++|++.+.+++..|.|+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         289 TVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             ccccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence            44555556555677777765443333567889999999998876655778999999999999998887666554

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.97  E-value=1.6e-29  Score=211.29  Aligned_cols=219  Identities=24%  Similarity=0.387  Sum_probs=186.1

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhh-cCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRII  100 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~-~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~  100 (258)
                      .|+|++|+.++++.++++|+++++++++.++..+.|||+++... ..+.+|++|||+|+|++|++++++++..| . +|+
T Consensus       118 ~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~  196 (340)
T cd05284         118 DGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVI  196 (340)
T ss_pred             CCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEE
Confidence            58999999999999999999999999999999999999998665 46888999999999889999999999999 6 899


Q ss_pred             EEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          101 GVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       101 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      ++++++++.+.++++|+++++++++   . +.+.+++.+++ ++|+++|++|+......++++++++ |+++.+|.... 
T Consensus       197 ~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~-  270 (340)
T cd05284         197 AVDRSEEALKLAERLGADHVLNASD---D-VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGH-  270 (340)
T ss_pred             EEeCCHHHHHHHHHhCCcEEEcCCc---c-HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEEcCCCC-
Confidence            9999999999999999999998877   5 78888888776 8999999999866689999999999 99999986542 


Q ss_pred             CceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                        ..++....+.+++++.++....   .+.+.++++++.++.+++   ..+.|+++++++|++.+++++.. |+++.+
T Consensus       271 --~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~g~l~~---~~~~~~~~~~~~a~~~~~~~~~~gkvv~~~  340 (340)
T cd05284         271 --GRLPTSDLVPTEISVIGSLWGT---RAELVEVVALAESGKVKV---EITKFPLEDANEALDRLREGRVTGRAVLVP  340 (340)
T ss_pred             --CccCHHHhhhcceEEEEEeccc---HHHHHHHHHHHHhCCCCc---ceEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence              2333444456788888875332   467889999999997664   34689999999999999988776 888753

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=2.1e-29  Score=212.61  Aligned_cols=227  Identities=29%  Similarity=0.472  Sum_probs=191.8

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|++|+.++...++++|+++++.+++.++.++.|||+++.....+.++++|||+|+|++|++++++|+..|+.+|+++
T Consensus       139 ~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~  218 (367)
T cd08263         139 MGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAV  218 (367)
T ss_pred             CCcceeEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999998777888999999999889999999999999999449989


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      ++++++.++++++|++.+++.++   .++.+.+++..++ ++|++||++++......++++++++ |+++.+|.......
T Consensus       219 ~~s~~~~~~~~~~g~~~v~~~~~---~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~  294 (367)
T cd08263         219 DVRDEKLAKAKELGATHTVNAAK---EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGAT  294 (367)
T ss_pred             eCCHHHHHHHHHhCCceEecCCc---ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCc
Confidence            88999999999999999999887   7788888888766 8999999999874489999999999 99999986543223


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEe
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      ..+....++.++.++.++....  .++.+.++++++.++.++..+.+++.|+++++.+|++.+++++.. |+|++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         295 AEIPITRLVRRGIKIIGSYGAR--PRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             cccCHHHHhhCCeEEEecCCCC--cHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence            3444445556788887753221  135788899999999877665567899999999999999988766 88873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=1.6e-29  Score=210.63  Aligned_cols=217  Identities=20%  Similarity=0.338  Sum_probs=186.1

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+++||+.+++..++++|+++++++++.+++++.|||+++. ..++.+|++|||+|+|++|++++++++..|+ +|+++
T Consensus       116 ~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~  193 (333)
T cd08296         116 DGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAI  193 (333)
T ss_pred             CCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEE
Confidence            589999999999999999999999999999999999999874 4589999999999999999999999999999 89999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.++++++|+++++++.+   .++...+++.  +++|+++|++|....+...+++++++ |+++.+|...  ...
T Consensus       194 ~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~  265 (333)
T cd08296         194 SRGSDKADLARKLGAHHYIDTSK---EDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPR-GKLLILGAAG--EPV  265 (333)
T ss_pred             eCChHHHHHHHHcCCcEEecCCC---ccHHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccC-CEEEEEecCC--CCC
Confidence            99999999999999999999887   6677777665  36999999998666699999999999 9999999654  234


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEe
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      +++...++.+++++.++..+.   ..++.++++++.++.++  +.+ +.|+++++.+|++.+.+++.. |+|++
T Consensus       266 ~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~l~--~~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~  333 (333)
T cd08296         266 AVSPLQLIMGRKSIHGWPSGT---ALDSEDTLKFSALHGVR--PMV-ETFPLEKANEAYDRMMSGKARFRVVLT  333 (333)
T ss_pred             CcCHHHHhhcccEEEEeCcCC---HHHHHHHHHHHHhCCCC--ceE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence            556666778899999986433   35688888998888654  345 689999999999999988876 98874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK10083 putative oxidoreductase; Provisional

Probab=99.97  E-value=2.6e-29  Score=210.01  Aligned_cols=223  Identities=15%  Similarity=0.305  Sum_probs=182.4

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHH-cCCCeEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRII  100 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~-~g~~~v~  100 (258)
                      ..|+|+||+.++...++++|+++++++++ +..++.++++ +....++++|++|+|+|+|++|++++|+++. +|+..++
T Consensus       113 ~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~  190 (339)
T PRK10083        113 RDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVI  190 (339)
T ss_pred             cCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEE
Confidence            35899999999999999999999988876 4457888886 4577889999999999999999999999996 6996688


Q ss_pred             EEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          101 GVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       101 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      ++++++++.+.++++|++.++++++   .++.+.+..  .+ ++|++||++|.+..+..++++++++ |+++.+|.... 
T Consensus       191 ~~~~~~~~~~~~~~~Ga~~~i~~~~---~~~~~~~~~--~g~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-  263 (339)
T PRK10083        191 VADRIDERLALAKESGADWVINNAQ---EPLGEALEE--KGIKPTLIIDAACHPSILEEAVTLASPA-ARIVLMGFSSE-  263 (339)
T ss_pred             EEcCCHHHHHHHHHhCCcEEecCcc---ccHHHHHhc--CCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-
Confidence            8888999999999999999998876   566666643  23 6789999999776699999999999 99999996542 


Q ss_pred             CceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCC-e-eEEEEeeC
Q 025101          180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-C-LRCVIWMG  257 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~k~vi~~~  257 (258)
                       ...++...+..+++++.+...    ..+.++++++++.++.+++.++++++|+++++++|++.++++. . .|+++.+.
T Consensus       264 -~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~  338 (339)
T PRK10083        264 -PSEIVQQGITGKELSIFSSRL----NANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFA  338 (339)
T ss_pred             -CceecHHHHhhcceEEEEEec----ChhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecC
Confidence             233344445567777776642    2467899999999998876656779999999999999998643 3 49999887


Q ss_pred             C
Q 025101          258 E  258 (258)
Q Consensus       258 ~  258 (258)
                      |
T Consensus       339 ~  339 (339)
T PRK10083        339 E  339 (339)
T ss_pred             C
Confidence            5

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.97  E-value=4.2e-29  Score=209.20  Aligned_cols=223  Identities=29%  Similarity=0.427  Sum_probs=189.9

Q ss_pred             cceeeeEEEecc--eEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           24 SSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        24 g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      |+|++|+.++..  .++++|++++..+++.++..+.|||+++....++.+|+++||+|+|++|++++|+++..|..+|++
T Consensus       117 g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~  196 (345)
T cd08286         117 GTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIM  196 (345)
T ss_pred             CeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            889999999987  899999999999999999999999997777788999999999999999999999999999438999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCC
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  180 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  180 (258)
                      +++++++.++++++|++.++++++   .++...+.+.+++ ++|++|||+|....++.+++.++++ |+++.+|....  
T Consensus       197 ~~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~--  270 (345)
T cd08286         197 VDLDDNRLEVAKKLGATHTVNSAK---GDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHGK--  270 (345)
T ss_pred             EcCCHHHHHHHHHhCCCceecccc---ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-cEEEEecccCC--
Confidence            988999999999999999999887   6777888887776 8999999999877689999999999 99999985432  


Q ss_pred             ceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcC---CeeEEEEee
Q 025101          181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG---KCLRCVIWM  256 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~k~vi~~  256 (258)
                      ..+++...++.+++++.+....    ...+.+++++++++.++..++++++|+++++++|++.+...   ...|++|++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         271 PVDLHLEKLWIKNITITTGLVD----TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             CCCcCHHHHhhcCcEEEeecCc----hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence            3445555567789998875321    24588899999999887766677999999999999999875   345999875

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=8.4e-29  Score=206.73  Aligned_cols=221  Identities=27%  Similarity=0.475  Sum_probs=186.2

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|++|+.++++ ++++|+++++++++++ .++.++++++ ...++.+|++|||+|+|.+|++++|+|+.+|+ +|+++
T Consensus       114 ~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~  189 (337)
T cd08261         114 DGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVV  189 (337)
T ss_pred             CCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEE
Confidence            5899999999999 9999999999999887 4778888876 77889999999999889999999999999999 89999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      ++++++.++++++|+++++++++   .++.+.+.+.+++ ++|++||++|+...+..++++++++ |+++.+|....  .
T Consensus       190 ~~s~~~~~~~~~~g~~~v~~~~~---~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~i~~g~~~~--~  263 (337)
T cd08261         190 DIDDERLEFARELGADDTINVGD---EDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSKG--P  263 (337)
T ss_pred             CCCHHHHHHHHHhCCCEEecCcc---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEcCCCC--C
Confidence            99999999999999999999887   6788888888776 8999999998876689999999999 99999986542  2


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCC-ee-EEEEee
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-CL-RCVIWM  256 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~-k~vi~~  256 (258)
                      ..++...+..+++++.+..   ....+.+.++++++.++.+++.+.+...++++++.+|++.+.+++ .. |+|+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         264 VTFPDPEFHKKELTILGSR---NATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             CccCHHHHHhCCCEEEEec---cCChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            3344444566778877753   223467889999999998776434668899999999999998873 55 999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=8.7e-29  Score=207.28  Aligned_cols=227  Identities=24%  Similarity=0.343  Sum_probs=189.8

Q ss_pred             cccceeeeEEEecc--eEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeE
Q 025101           22 SVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRI   99 (258)
Q Consensus        22 ~~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v   99 (258)
                      +.|+|++|+.+++.  .++++|++++.++++.++.++.|||+++.+..++.++++|+|+|+|++|++++++++..|+ +|
T Consensus       114 ~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~v  192 (345)
T cd08260         114 HPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RV  192 (345)
T ss_pred             CCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eE
Confidence            36899999999985  8999999999999999999999999998778889999999999999999999999999999 89


Q ss_pred             EEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          100 IGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       100 ~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      +++++++++.+.++++|++.+++.++  ..++...+.+..++++|.+|||+|+...+...+++++++ |+++.+|.....
T Consensus       193 i~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~~  269 (345)
T cd08260         193 IAVDIDDDKLELARELGAVATVNASE--VEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGE  269 (345)
T ss_pred             EEEeCCHHHHHHHHHhCCCEEEcccc--chhHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEeCCcCCC
Confidence            99999999999999999988988764  135666777766558999999999766688999999999 999999865433


Q ss_pred             Cc-eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEe
Q 025101          180 SQ-LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       180 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      .. ..++...+..+++++.+....   ..+.+++++++++++.+...+.+++.++++++++|++.++.+... |+|+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~  344 (345)
T cd08260         270 EAGVALPMDRVVARELEIVGSHGM---PAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT  344 (345)
T ss_pred             CCccccCHHHHhhcccEEEeCCcC---CHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence            22 344555555778888887532   246788999999999877655567899999999999999987766 87753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.97  E-value=5.7e-29  Score=206.45  Aligned_cols=242  Identities=17%  Similarity=0.185  Sum_probs=202.4

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |+++..++  +||+|+++...|+|++|+.++...++++|+++++++++.+++.+.+||+++.....+.+|++|+|+|+ |
T Consensus        72 G~~v~~~~--~Gd~V~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~  149 (323)
T cd05282          72 GSGVSGLL--VGQRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANS  149 (323)
T ss_pred             CCCCCCCC--CCCEEEEeCCCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEccccc
Confidence            45666777  99999976546899999999999999999999999999999999999999877788899999999987 8


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAY  160 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~  160 (258)
                      ++|++++++|+..|+ +++++++++++.+.++++|++.++++++   .++...+.+.+++ ++|++|||+|+.. ....+
T Consensus       150 ~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~  224 (323)
T cd05282         150 AVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP---EDLAQRVKEATGGAGARLALDAVGGES-ATRLA  224 (323)
T ss_pred             HHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc---hhHHHHHHHHhcCCCceEEEECCCCHH-HHHHH
Confidence            999999999999999 8999999999999999999999998876   6788888888877 9999999999877 77889


Q ss_pred             HhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC-------CCcHHHHHHHHHcCCCCCCcccccccc
Q 025101          161 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA-------KSDIPILLKRYMDKELELDKFVTHEMK  233 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~  233 (258)
                      ++++++ |+++.+|..... ...++...+..++.++.+.....+..       .+.+.++++++.++.+..  .+++.|+
T Consensus       225 ~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~  300 (323)
T cd05282         225 RSLRPG-GTLVNYGLLSGE-PVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTT--PVGAKFP  300 (323)
T ss_pred             HhhCCC-CEEEEEccCCCC-CCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCccc--Cccceec
Confidence            999999 999999866443 34455555555789988876544321       134777888998997654  3568899


Q ss_pred             cccHHHHHHHHhcCCee-EEEEe
Q 025101          234 FEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       234 ~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      ++++++|++.+.+++.. |++++
T Consensus       301 ~~~~~~a~~~~~~~~~~~kvv~~  323 (323)
T cd05282         301 LEDFEEAVAAAEQPGRGGKVLLT  323 (323)
T ss_pred             HHHHHHHHHHHhcCCCCceEeeC
Confidence            99999999999887666 88763

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.97  E-value=9.8e-29  Score=209.68  Aligned_cols=225  Identities=27%  Similarity=0.414  Sum_probs=188.3

Q ss_pred             ccceeeeEEEecc--eEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEE
Q 025101           23 VSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII  100 (258)
Q Consensus        23 ~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~  100 (258)
                      .|+|+||++++++  .++++|++++++++++++..+.|||+++ ...++.+|++|||+|+|++|++++++|+..|+.+|+
T Consensus       135 ~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi  213 (386)
T cd08283         135 AGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVI  213 (386)
T ss_pred             CCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            4899999999988  8999999999999999999999999997 788899999999999899999999999999985699


Q ss_pred             EEcCCcchHHHHHhcCCceEEcCCCCCCc-cHHHHHHHhcCC-CCCEEEEecCCh---------------------hhHH
Q 025101          101 GVDVISEKFEIGKRFGVTEFVNSKNCGDK-SVSQIIIDMTDG-GADYCFECVGLA---------------------SLVQ  157 (258)
Q Consensus       101 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~-~~~~~i~~~~~~-~~d~v~d~~g~~---------------------~~~~  157 (258)
                      ++++++++.+++++++...++++.+   . ++.+.+.+.+++ ++|++||++|+.                     ..+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~vi~~~~---~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (386)
T cd08283         214 AIDRVPERLEMARSHLGAETINFEE---VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALR  290 (386)
T ss_pred             EEcCCHHHHHHHHHcCCcEEEcCCc---chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHH
Confidence            9999999999999984446777766   5 488888888877 899999999753                     3578


Q ss_pred             HHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccH
Q 025101          158 EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI  237 (258)
Q Consensus       158 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  237 (258)
                      .++++++++ |+++.+|..... ...++....+.+++++.+....   ..+.+.++++++.++.+...+++++.|+++++
T Consensus       291 ~~~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~  365 (386)
T cd08283         291 EAIQAVRKG-GTVSIIGVYGGT-VNKFPIGAAMNKGLTLRMGQTH---VQRYLPRLLELIESGELDPSFIITHRLPLEDA  365 (386)
T ss_pred             HHHHHhccC-CEEEEEcCCCCC-cCccCHHHHHhCCcEEEeccCC---chHHHHHHHHHHHcCCCChhHceEEEecHHHH
Confidence            899999999 999999865432 2334444567788888887422   24678899999999988776667789999999


Q ss_pred             HHHHHHHhcCC-ee-EEEEee
Q 025101          238 NSAFDLLIKGK-CL-RCVIWM  256 (258)
Q Consensus       238 ~~a~~~~~~~~-~~-k~vi~~  256 (258)
                      .+|++.+.+++ .. |++|++
T Consensus       366 ~~a~~~~~~~~~~~~k~~~~~  386 (386)
T cd08283         366 PEAYKIFDKKEDGCIKVVLKP  386 (386)
T ss_pred             HHHHHHHHhCCCCeEEEEecC
Confidence            99999998876 33 999863

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.97  E-value=1.3e-28  Score=206.09  Aligned_cols=241  Identities=25%  Similarity=0.389  Sum_probs=197.8

Q ss_pred             CCCCccccCCCCceeeeec---------------------------cccceeeeEEEecce-----EEEcCCCCCccchh
Q 025101            3 RDQTSRFKDLRGETIHHFV---------------------------SVSSFSEYTVLDIAH-----VVKVDPTVPPNRAC   50 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---------------------------~~g~~~~~~~v~~~~-----~~~~p~~~~~~~aa   50 (258)
                      |.++..++  +||+|+++.                           ..|+|++|+.++++.     ++++|+++++++++
T Consensus        69 G~~v~~~~--~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa  146 (343)
T cd08235          69 GDGVTGFK--VGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAA  146 (343)
T ss_pred             CCCCCCCC--CCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHH
Confidence            34455677  899999652                           358999999999998     99999999999998


Q ss_pred             hcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc
Q 025101           51 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS  130 (258)
Q Consensus        51 ~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  130 (258)
                      ++ .++.+||+++. ..++.+|++|+|+|+|++|++++|+|+..|++.|+++++++++.+.++++|++.++++++   .+
T Consensus       147 ~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~---~~  221 (343)
T cd08235         147 LV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAE---ED  221 (343)
T ss_pred             hh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCc---cC
Confidence            76 68899999874 458999999999988999999999999999933888999999999999999989999887   78


Q ss_pred             HHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCc
Q 025101          131 VSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSD  209 (258)
Q Consensus       131 ~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (258)
                      +.+.+.+..++ ++|++|||+++...+...+++++++ |+++.+|.........+....+..+++++.+.....   .+.
T Consensus       222 ~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~  297 (343)
T cd08235         222 LVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITITGSYAAS---PED  297 (343)
T ss_pred             HHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEeccCCCCCcccCHHHHhhCceEEEEEecCC---hhh
Confidence            88888888777 8999999999776689999999999 999999864433233444455566778877664322   456


Q ss_pred             HHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEe
Q 025101          210 IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       210 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      ++++++++.++.+.+.+.+..+|+++++.+|++.+.+++ . |+|+.
T Consensus       298 ~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~  343 (343)
T cd08235         298 YKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVIT  343 (343)
T ss_pred             HHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence            888999999997765445668899999999999999888 6 88863

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.97  E-value=1.3e-28  Score=204.31  Aligned_cols=242  Identities=17%  Similarity=0.176  Sum_probs=200.5

Q ss_pred             CCCCccccCCCCceeeeecc--ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc
Q 025101            3 RDQTSRFKDLRGETIHHFVS--VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL   80 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~--~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~   80 (258)
                      |+++..++  +||+|+++.+  .|+|++|+.++...++++|+++++++++.+++++.|||. +.+..+++++++++|+|+
T Consensus        75 G~~v~~~~--~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~  151 (324)
T cd08244          75 GPGVDPAW--LGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAA  151 (324)
T ss_pred             CCCCCCCC--CCCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcC
Confidence            34445677  9999997642  689999999999999999999999999999999999954 567888999999999985


Q ss_pred             -CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHH
Q 025101           81 -GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQE  158 (258)
Q Consensus        81 -g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~  158 (258)
                       |++|++++++++..|+ +|+++++++++.+.++++|++.+++.++   .++.+.+.+..++ ++|+++|++|+.. ...
T Consensus       152 ~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~  226 (324)
T cd08244         152 AGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVAVDYTR---PDWPDQVREALGGGGVTVVLDGVGGAI-GRA  226 (324)
T ss_pred             CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEecCC---ccHHHHHHHHcCCCCceEEEECCChHh-HHH
Confidence             9999999999999999 8999999999999999999988888877   7788888888776 8999999999886 799


Q ss_pred             HHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC---CCcHHHHHHHHHcCCCCCCcccccccccc
Q 025101          159 AYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFE  235 (258)
Q Consensus       159 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  235 (258)
                      ++++++++ |+++.+|...... ..++....+.+++++.+........   .+.+.+.++++.++.+.  +.+++.|+++
T Consensus       227 ~~~~l~~~-g~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~  302 (324)
T cd08244         227 ALALLAPG-GRFLTYGWASGEW-TALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLV--PVVGQTFPLE  302 (324)
T ss_pred             HHHHhccC-cEEEEEecCCCCC-CccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCcc--CccceEEeHH
Confidence            99999999 9999998654322 2445455577888888776433211   24567788889888665  3466889999


Q ss_pred             cHHHHHHHHhcCCee-EEEEee
Q 025101          236 EINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       236 ~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ++++|++.+.+++.. |+++++
T Consensus       303 ~~~~a~~~~~~~~~~~kvv~~~  324 (324)
T cd08244         303 RAAEAHAALEARSTVGKVLLLP  324 (324)
T ss_pred             HHHHHHHHHHcCCCCceEEEeC
Confidence            999999999888777 988864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.97  E-value=7.8e-29  Score=210.96  Aligned_cols=223  Identities=18%  Similarity=0.286  Sum_probs=183.8

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhh--cCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRI   99 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v   99 (258)
                      .|+|+||+++++..++++|+++++++++.+++++.|||+++...  +++.+|++|+|+|+ |++|++++++++..|+ ++
T Consensus       143 ~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~v  221 (393)
T cd08246         143 YGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NP  221 (393)
T ss_pred             CCcceeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eE
Confidence            48999999999999999999999999999999999999987644  67899999999997 9999999999999999 78


Q ss_pred             EEEcCCcchHHHHHhcCCceEEcCCCCC-------------------CccHHHHHHHhcCC--CCCEEEEecCChhhHHH
Q 025101          100 IGVDVISEKFEIGKRFGVTEFVNSKNCG-------------------DKSVSQIIIDMTDG--GADYCFECVGLASLVQE  158 (258)
Q Consensus       100 ~~~~~~~~~~~~~~~~g~~~vi~~~~~~-------------------~~~~~~~i~~~~~~--~~d~v~d~~g~~~~~~~  158 (258)
                      +++++++++.++++++|++.++++++.+                   ...+.+.+.+++++  ++|++||++|+.. +..
T Consensus       222 v~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~-~~~  300 (393)
T cd08246         222 VAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRAT-FPT  300 (393)
T ss_pred             EEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHh-HHH
Confidence            8889999999999999999999875410                   01356677787766  6999999999855 899


Q ss_pred             HHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHH
Q 025101          159 AYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN  238 (258)
Q Consensus       159 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  238 (258)
                      ++++++++ |+++.+|..... ..+++...++.++.++.+++...   .+.+.++++++.++.+.  +.++++|++++++
T Consensus       301 ~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~l~~~~~~i~g~~~~~---~~~~~~~~~~~~~~~l~--~~~~~~~~l~~~~  373 (393)
T cd08246         301 SVFVCDRG-GMVVICAGTTGY-NHTYDNRYLWMRQKRIQGSHFAN---DREAAEANRLVMKGRID--PCLSKVFSLDETP  373 (393)
T ss_pred             HHHHhccC-CEEEEEcccCCC-CCCCcHHHHhhheeEEEecccCc---HHHHHHHHHHHHcCCce--eeeeEEEeHHHHH
Confidence            99999999 999999865432 23344455666788888875443   35688899999999665  3467899999999


Q ss_pred             HHHHHHhcC-Cee-EEEE
Q 025101          239 SAFDLLIKG-KCL-RCVI  254 (258)
Q Consensus       239 ~a~~~~~~~-~~~-k~vi  254 (258)
                      +|++.+.++ +.. |+++
T Consensus       374 ~a~~~~~~~~~~~gkvvv  391 (393)
T cd08246         374 DAHQLMHRNQHHVGNMAV  391 (393)
T ss_pred             HHHHHHHhCccccceEEE
Confidence            999999887 555 7775

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.97  E-value=1.6e-28  Score=204.60  Aligned_cols=244  Identities=20%  Similarity=0.283  Sum_probs=199.0

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |.++..++  +||+|+++..+|+|++|++++.+.++++|+++++++++.++.++.+||+++.....+++|++|+|+|+ |
T Consensus        74 G~~v~~~~--~Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g  151 (334)
T PTZ00354         74 GSDVKRFK--EGDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGAS  151 (334)
T ss_pred             CCCCCCCC--CCCEEEEecCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence            34555677  99999987667999999999999999999999999999999999999999877788999999999986 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc-HHHHHHHhcCC-CCCEEEEecCChhhHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS-VSQIIIDMTDG-GADYCFECVGLASLVQEA  159 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~-~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~  159 (258)
                      ++|++++++++..|+ +++++++++++.++++++|++.+++...   .+ +.+.+.+.+++ ++|++||++|+.. +..+
T Consensus       152 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~  226 (334)
T PTZ00354        152 GVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILIRYPD---EEGFAPKVKKLTGEKGVNLVLDCVGGSY-LSET  226 (334)
T ss_pred             hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC---hhHHHHHHHHHhCCCCceEEEECCchHH-HHHH
Confidence            999999999999999 7788888999999999999988888765   44 77788888766 8999999998765 8999


Q ss_pred             HHhhhcCCceEEEecccCCCCcee-echHHHHhcCceEEecccCCCCC--C-----CcHHHHHHHHHcCCCCCCcccccc
Q 025101          160 YACCRKGWGKTIVLGVDQPGSQLS-LSSFEVLHSGKILMGSLFGGLKA--K-----SDIPILLKRYMDKELELDKFVTHE  231 (258)
Q Consensus       160 ~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~g~~~~~~~~~~~  231 (258)
                      +++++++ |+++.+|...+. ... ++...++.+..++.++.......  +     +.++++++++.++.+..  .+.+.
T Consensus       227 ~~~l~~~-g~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~  302 (334)
T PTZ00354        227 AEVLAVD-GKWIVYGFMGGA-KVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKP--IVDRT  302 (334)
T ss_pred             HHHhccC-CeEEEEecCCCC-cccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccC--ccccE
Confidence            9999999 999999854332 222 55555666677888865433111  0     22467778888886653  36688


Q ss_pred             cccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          232 MKFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       232 ~~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      +++++++++++.+.+++.. |+++.+.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~kvvv~~~  329 (334)
T PTZ00354        303 YPLEEVAEAHTFLEQNKNIGKVVLTVN  329 (334)
T ss_pred             EcHHHHHHHHHHHHhCCCCceEEEecC
Confidence            9999999999999887665 9998765

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.97  E-value=1.4e-28  Score=206.10  Aligned_cols=225  Identities=29%  Similarity=0.444  Sum_probs=185.5

Q ss_pred             ccceeeeEEEecc--eEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEE
Q 025101           23 VSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII  100 (258)
Q Consensus        23 ~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~  100 (258)
                      .|+|++|++++++  .++++|+++++++++.++.++.|||+++ ...++++|++|||.|+|++|++++|+|+.+|..+++
T Consensus       118 ~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~  196 (347)
T cd05278         118 DGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARII  196 (347)
T ss_pred             CCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            5899999999997  8999999999999999999999999987 678899999999988899999999999999965788


Q ss_pred             EEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          101 GVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       101 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      ++++++++.+.++++|++.++++++   .++.+.+++.+++ ++|++||++|....+..++++++++ |+++.+|.....
T Consensus       197 ~~~~~~~~~~~~~~~g~~~vi~~~~---~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~  272 (347)
T cd05278         197 AVDSNPERLDLAKEAGATDIINPKN---GDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKP  272 (347)
T ss_pred             EEeCCHHHHHHHHHhCCcEEEcCCc---chHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcC-CEEEEEcCCCCC
Confidence            8888888999999999999999887   6788888888776 8999999999855589999999999 999999854332


Q ss_pred             CceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCe-e-EEEEee
Q 025101          180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-L-RCVIWM  256 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~-k~vi~~  256 (258)
                      ... ......+.+++++.+.....   .+.+.++++++.++.+++.+.+...++++++++|++.+..++. . |+++++
T Consensus       273 ~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         273 DPL-PLLGEWFGKNLTFKTGLVPV---RARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             ccc-CccchhhhceeEEEeeccCc---hhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence            111 11122345677777654222   4678899999999987765545688999999999999987766 4 888763

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.9e-28  Score=204.87  Aligned_cols=239  Identities=22%  Similarity=0.330  Sum_probs=190.0

Q ss_pred             CCCcc-ccCCCCceeeeec-----------------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhh
Q 025101            4 DQTSR-FKDLRGETIHHFV-----------------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR   65 (258)
Q Consensus         4 ~~~~~-~~~~~G~~v~~~~-----------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~   65 (258)
                      .++.. |+  +||+|+++.                 ..|+|+||+.++++.++++|+++++++++ ++.++++||++ ..
T Consensus        80 ~~v~~~~~--~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~  155 (341)
T cd08262          80 PGTERKLK--VGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHA-VR  155 (341)
T ss_pred             CCCcCCCC--CCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHH-HH
Confidence            34444 76  999999762                 35899999999999999999999999887 55688999998 47


Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHH---HHHHhcCC-
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQ---IIIDMTDG-  141 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~---~i~~~~~~-  141 (258)
                      ..++++|++|||+|+|++|++++|+++..|+..++++++++++.++++++|+++++++++   .+..+   .+....++ 
T Consensus       156 ~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~~~~~~  232 (341)
T cd08262         156 RARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAA---DSPFAAWAAELARAGGP  232 (341)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCC---cCHHHHHHHHHHHhCCC
Confidence            888999999999988999999999999999955788888899999999999988998776   32221   34445555 


Q ss_pred             CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCC
Q 025101          142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE  221 (258)
Q Consensus       142 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  221 (258)
                      ++|++||++|+...+..++++++++ |+++.+|.......  ........++.++.+....   ..+.+.++++++.+|.
T Consensus       233 ~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~g~  306 (341)
T cd08262         233 KPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGVCMESDN--IEPALAIRKELTLQFSLGY---TPEEFADALDALAEGK  306 (341)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCCc--cCHHHHhhcceEEEEEecc---cHHHHHHHHHHHHcCC
Confidence            8999999999865588999999999 99999986533222  2222334567777655322   2347889999999998


Q ss_pred             CCCCcccccccccccHHHHHHHHhcCCee-EEEEe
Q 025101          222 LELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      +.+.+.++++|+++++++|++.+.+++.. |++++
T Consensus       307 i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~  341 (341)
T cd08262         307 VDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD  341 (341)
T ss_pred             CChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            88666667899999999999999988766 88864

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.97  E-value=1.8e-28  Score=205.69  Aligned_cols=241  Identities=23%  Similarity=0.304  Sum_probs=197.9

Q ss_pred             CCCCccccCCCCceeeeec---------------------------cccceeeeEEEecceEEEcCCCCCccchhhcchh
Q 025101            3 RDQTSRFKDLRGETIHHFV---------------------------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG   55 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---------------------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~   55 (258)
                      |.++..++  +||+|+.+.                           ..|+|++|+.++.+.++++|+++++.+++.+++.
T Consensus        82 G~~v~~~~--~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~  159 (350)
T cd08240          82 GPDAADVK--VGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACS  159 (350)
T ss_pred             CCCCCCCC--CCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhhch
Confidence            44555566  899998652                           3589999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHH
Q 025101           56 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQII  135 (258)
Q Consensus        56 ~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i  135 (258)
                      +.|||+++.......++++|+|+|+|++|++++|+|+..|+++|+++++++++.+.++++|++.+++.++   .++.+.+
T Consensus       160 ~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~  236 (350)
T cd08240         160 GLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSD---PDAAKRI  236 (350)
T ss_pred             hhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCC---ccHHHHH
Confidence            9999999876666678999999988999999999999999977889999999999999999988888877   6777777


Q ss_pred             HHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHH
Q 025101          136 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLK  215 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (258)
                      .+..++++|++||++|....+..++++++++ |+++.+|.......  .+......++.++.+.....   .+++.++++
T Consensus       237 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~--~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~  310 (350)
T cd08240         237 IKAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLFGGEAT--LPLPLLPLRALTIQGSYVGS---LEELRELVA  310 (350)
T ss_pred             HHHhCCCCcEEEECCCCHHHHHHHHHHhhcC-CeEEEECCCCCCCc--ccHHHHhhcCcEEEEcccCC---HHHHHHHHH
Confidence            7776558999999999766699999999999 99999986544222  22233344788888775433   356888999


Q ss_pred             HHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          216 RYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       216 ~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +++++.++..  ....|+++++++|++.+.+++.. |+++++
T Consensus       311 ll~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  350 (350)
T cd08240         311 LAKAGKLKPI--PLTERPLSDVNDALDDLKAGKVVGRAVLKP  350 (350)
T ss_pred             HHHcCCCccc--eeeEEcHHHHHHHHHHHHcCCccceEEecC
Confidence            9999976643  45789999999999999887766 888753

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.97  E-value=3e-28  Score=203.94  Aligned_cols=223  Identities=27%  Similarity=0.393  Sum_probs=185.4

Q ss_pred             ccceeeeEEEecc--eEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEE
Q 025101           23 VSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII  100 (258)
Q Consensus        23 ~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~  100 (258)
                      .|+|++|+.+++.  .++++|+++++++++.++.++.|||+++. ...+.+|++|||+|+|++|++++++++.+|+.+|+
T Consensus       118 ~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~  196 (344)
T cd08284         118 DGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVF  196 (344)
T ss_pred             CCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEE
Confidence            4899999999975  99999999999999999999999999874 57888999999999899999999999999975789


Q ss_pred             EEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          101 GVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       101 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      ++++++++.+.++++|+. +++.+.   .++...+.+++++ ++|++||++|+...+...+++++++ |+++.+|.... 
T Consensus       197 ~~~~~~~~~~~~~~~g~~-~~~~~~---~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~-  270 (344)
T cd08284         197 AVDPVPERLERAAALGAE-PINFED---AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGVHTA-  270 (344)
T ss_pred             EEcCCHHHHHHHHHhCCe-EEecCC---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEECcCCC-
Confidence            998888999999999975 566666   6788888888876 8999999999876689999999999 99999996643 


Q ss_pred             CceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEe
Q 025101          180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  255 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  255 (258)
                      ..........+.+++++.+..   ....+.+.++++++.++.+++.++++++++++++++|++.+.+++..|+|++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~Vi~  343 (344)
T cd08284         271 EEFPFPGLDAYNKNLTLRFGR---CPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD  343 (344)
T ss_pred             CCccccHHHHhhcCcEEEEec---CCcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCceEEEec
Confidence            223344445567788877543   1235679999999999987765556789999999999998887655688875

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.97  E-value=3.2e-28  Score=203.72  Aligned_cols=220  Identities=27%  Similarity=0.451  Sum_probs=183.4

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|++|++++++.++++|+++++++++.+ .++.+|++++ ...++++|++++|+|+|++|++++|+|+..|+.+|+++
T Consensus       116 ~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~  193 (343)
T cd05285         116 DGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVT  193 (343)
T ss_pred             CCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence            589999999999999999999999999877 4788999986 78899999999999889999999999999999448999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccH---HHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSV---SQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~---~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      ++++++.++++++|++.++++++   .++   .+.+.+.+++ ++|++|||+|+...++.++++++++ |+++.+|....
T Consensus       194 ~~~~~~~~~~~~~g~~~vi~~~~---~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~  269 (343)
T cd05285         194 DIDPSRLEFAKELGATHTVNVRT---EDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKP  269 (343)
T ss_pred             CCCHHHHHHHHHcCCcEEecccc---ccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC
Confidence            99999999999999999998877   453   7778877776 8999999999875589999999999 99999985433


Q ss_pred             CCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCC-e-eEEEE
Q 025101          179 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-C-LRCVI  254 (258)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~k~vi  254 (258)
                      .  ..++......+++++.+....    .+.+.+.++++.++.+.+.+.+.+.|+++++.+|++.+.+++ . .|++|
T Consensus       270 ~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~  341 (343)
T cd05285         270 E--VTLPLSAASLREIDIRGVFRY----ANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI  341 (343)
T ss_pred             C--CccCHHHHhhCCcEEEEeccC----hHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence            2  333444556667777776422    256888999999997765555678899999999999998874 3 59987

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=4e-28  Score=203.64  Aligned_cols=221  Identities=26%  Similarity=0.414  Sum_probs=183.9

Q ss_pred             cccceeeeEEEecc-eEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEE
Q 025101           22 SVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII  100 (258)
Q Consensus        22 ~~g~~~~~~~v~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~  100 (258)
                      ..|+|+||+.++++ .++++|+++++++++.+ .++.++|+++ +..++.+|++|+|.|+|++|++++++|+..|+..++
T Consensus       126 ~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~  203 (350)
T cd08256         126 VNGGMAEYMRFPKEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLI  203 (350)
T ss_pred             CCCcceeeEEcccccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            35899999999988 57899999999999988 7899999987 788899999999977899999999999999986678


Q ss_pred             EEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          101 GVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       101 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      ++++++++.+.++++|++.+++.++   .++.+.+.+.+++ ++|++||++|....+..++++++++ |+++.+|.....
T Consensus       204 ~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~  279 (350)
T cd08256         204 VLDLKDERLALARKFGADVVLNPPE---VDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-GRFVEFSVFGDP  279 (350)
T ss_pred             EEcCCHHHHHHHHHcCCcEEecCCC---cCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEccCCCC
Confidence            8888999999999999988998877   7788888888877 8999999999765688999999999 999999865432


Q ss_pred             CceeechHHH-HhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEE
Q 025101          180 SQLSLSSFEV-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       180 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi  254 (258)
                        ..+....+ ..+++++.++...    ...+.++++++.++.+++.+.+++.|+++++.+|++.+++++.. |+++
T Consensus       280 --~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         280 --VTVDWSIIGDRKELDVLGSHLG----PYCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             --CccChhHhhcccccEEEEeccC----chhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence              22332222 3456777776533    24688999999999887655567999999999999999987755 7764

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=6.2e-28  Score=201.81  Aligned_cols=221  Identities=26%  Similarity=0.407  Sum_probs=188.5

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      .|+|++|+.++++.++++|+++++++++.++..+.|||+++.. .++++++++||+|+ +++|++++++++..|+ +|++
T Consensus       118 ~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~  195 (341)
T cd08297         118 DGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIA  195 (341)
T ss_pred             CCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEE
Confidence            5899999999999999999999999999999999999998754 58899999999987 6799999999999999 8999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCC
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  180 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  180 (258)
                      +++++++.+.++++|++.++++++   .++.+.+.+.+++ ++|++||+.++...+..++++++++ |+++.+|.... .
T Consensus       196 ~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~-~  270 (341)
T cd08297         196 IDVGDEKLELAKELGADAFVDFKK---SDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPG-G  270 (341)
T ss_pred             EeCCHHHHHHHHHcCCcEEEcCCC---ccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcC-CEEEEecCCCC-C
Confidence            999999999999999999999887   6788888888866 8999999888777789999999999 99999986542 2


Q ss_pred             ceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ..+++...+..++.++.+.....   .+.++++++++.++.++.  .+ ..|+++++.+|++.+..+... |+++++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         271 FIPLDPFDLVLRGITIVGSLVGT---RQDLQEALEFAARGKVKP--HI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             CCCCCHHHHHhcccEEEEeccCC---HHHHHHHHHHHHcCCCcc--ee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            33455556667888888864322   367889999999997653  34 679999999999999988766 998875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.96  E-value=8.2e-28  Score=201.40  Aligned_cols=223  Identities=26%  Similarity=0.405  Sum_probs=184.1

Q ss_pred             cceeeeEEEecc--eEEEcCCCCCccchh-----hcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 025101           24 SSFSEYTVLDIA--HVVKVDPTVPPNRAC-----LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA   96 (258)
Q Consensus        24 g~~~~~~~v~~~--~~~~~p~~~~~~~aa-----~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~   96 (258)
                      |+|+||+.+|..  .++++|++++++.+.     .+...+.+||+++ ...++.+|++++|.|+|++|++++|+|+..|+
T Consensus       115 g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~  193 (345)
T cd08287         115 GGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGA  193 (345)
T ss_pred             CceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            889999999975  899999999873222     1224688899986 57788999999999889999999999999999


Q ss_pred             CeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecc
Q 025101           97 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus        97 ~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ..++++++++++.+.++++|++.++++++   .++.+.+.+.+++ ++|+++|++|++..+..++++++++ |+++.+|.
T Consensus       194 ~~v~~~~~~~~~~~~~~~~ga~~v~~~~~---~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~-g~~v~~g~  269 (345)
T cd08287         194 ERIIAMSRHEDRQALAREFGATDIVAERG---EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGV  269 (345)
T ss_pred             CEEEEECCCHHHHHHHHHcCCceEecCCc---ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccC-CEEEEecc
Confidence            55888888888999999999999999987   7788888888776 8999999999877799999999999 99999986


Q ss_pred             cCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEe
Q 025101          176 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  255 (258)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  255 (258)
                      ...  ...++....+.+++++.+.....   .+.++++++++.++.+++.+++++.++++++++|++.+.++...|++|+
T Consensus       270 ~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~~~~  344 (345)
T cd08287         270 PHG--GVELDVRELFFRNVGLAGGPAPV---RRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAIKVLLR  344 (345)
T ss_pred             cCC--CCccCHHHHHhcceEEEEecCCc---HHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCceEEEeC
Confidence            542  33444445567899988764222   4578899999999987765556789999999999999888776699986


Q ss_pred             e
Q 025101          256 M  256 (258)
Q Consensus       256 ~  256 (258)
                      +
T Consensus       345 ~  345 (345)
T cd08287         345 P  345 (345)
T ss_pred             C
Confidence            4

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.96  E-value=7.5e-28  Score=201.48  Aligned_cols=243  Identities=23%  Similarity=0.397  Sum_probs=195.4

Q ss_pred             CCCCccccCCCCceeeeec---------------------------cccceeeeEEEecceEEEcCCCCCccchhhcchh
Q 025101            3 RDQTSRFKDLRGETIHHFV---------------------------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG   55 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---------------------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~   55 (258)
                      |.++..|+  +||+|+++.                           ..|+|++|+++|++.++++|+++++++++++ .+
T Consensus        68 g~~v~~~~--~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~  144 (343)
T cd08236          68 GSGVDDLA--VGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EP  144 (343)
T ss_pred             CCCCCcCC--CCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-ch
Confidence            34555677  999998752                           3589999999999999999999999999888 47


Q ss_pred             hhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHH
Q 025101           56 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQII  135 (258)
Q Consensus        56 ~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i  135 (258)
                      +.+||+++. ...+.++++|+|+|+|.+|++++|+|+..|+.+|+++++++++.+.++++|++.++++++   .. .+.+
T Consensus       145 ~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~---~~-~~~~  219 (343)
T cd08236         145 AAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE---ED-VEKV  219 (343)
T ss_pred             HHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc---cc-HHHH
Confidence            889999874 778899999999988999999999999999944999999999999999999988998877   55 7777


Q ss_pred             HHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCcee-echHHHHhcCceEEecccCCC--CCCCcHH
Q 025101          136 IDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVLHSGKILMGSLFGGL--KAKSDIP  211 (258)
Q Consensus       136 ~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  211 (258)
                      .+..++ ++|++|||+|....+..++++++++ |+++.+|.......+. .+...++.++.++.++.....  ..++.++
T Consensus       220 ~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (343)
T cd08236         220 RELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWR  298 (343)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccccchhhHH
Confidence            777776 8999999998876689999999999 9999998654321121 233345577888887754321  1145688


Q ss_pred             HHHHHHHcCCCCCCcccccccccccHHHHHHHHhc-CCee-EEEE
Q 025101          212 ILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK-GKCL-RCVI  254 (258)
Q Consensus       212 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~-k~vi  254 (258)
                      ++++++.++.+.+.+.+...+++++++++++.+.+ +... |+|+
T Consensus       299 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         299 TALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             HHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            89999999977644446688999999999999988 5555 7764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.96  E-value=1e-27  Score=200.10  Aligned_cols=220  Identities=29%  Similarity=0.446  Sum_probs=187.0

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|++|+.++.+.++++|+++++++++.++.++.|||+++.....+.++++|||.|+|++|++++++|+..|+ +|+++
T Consensus       117 ~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~  195 (338)
T cd08254         117 DGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAV  195 (338)
T ss_pred             CCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEE
Confidence            48999999999999999999999999999999999999998778889999999999889999999999999999 89999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      ++++++.+.++++|++.+++.++   ......+ +...+ ++|+++||+|....+..++++++++ |+++.+|....  .
T Consensus       196 ~~s~~~~~~~~~~g~~~~~~~~~---~~~~~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~  268 (338)
T cd08254         196 DIKEEKLELAKELGADEVLNSLD---DSPKDKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRD--K  268 (338)
T ss_pred             cCCHHHHHHHHHhCCCEEEcCCC---cCHHHHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcC-CEEEEECCCCC--C
Confidence            99999999999999988888776   5566666 45555 8999999999877799999999999 99999986533  2


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ..++...+..++.++.++....   .+.+.++++++.++.+++.   .+.+++++++++++.+.+++.. |+++++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  338 (338)
T cd08254         269 LTVDLSDLIARELRIIGSFGGT---PEDLPEVLDLIAKGKLDPQ---VETRPLDEIPEVLERLHKGKVKGRVVLVP  338 (338)
T ss_pred             CccCHHHHhhCccEEEEeccCC---HHHHHHHHHHHHcCCCccc---ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            2344455677788888765332   4678889999999977754   4789999999999999988777 998864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=1.1e-27  Score=203.22  Aligned_cols=226  Identities=19%  Similarity=0.288  Sum_probs=181.7

Q ss_pred             ccceeeeEEEecceEEEcCCCC-------Cccchhhcchhhhhhhhhhhhh-cCCCCCCEEEEEccCHHHHHHHHHHHHc
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTV-------PPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLC   94 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~-------~~~~aa~~~~~~~ta~~~l~~~-~~~~~g~~vlI~G~g~~G~~a~~l~~~~   94 (258)
                      .|+|++|+.+++..++++|+++       +.+ +++++.++.+||+++... .++++|++|+|+|+|++|++++++++..
T Consensus       148 ~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~  226 (384)
T cd08265         148 DGAFAEYIAVNARYAWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAA  226 (384)
T ss_pred             CCcceeeEEechHHeEECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHc
Confidence            6899999999999999999863       444 556666899999998655 6899999999998899999999999999


Q ss_pred             CCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCCh-hhHHHHHHhhhcCCceEEE
Q 025101           95 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIV  172 (258)
Q Consensus        95 g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~  172 (258)
                      |+.+|+++++++++.+.++++|++.++++++....++.+.+.+++++ ++|+|+|++|+. ..+..++++++++ |+++.
T Consensus       227 G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~-G~~v~  305 (384)
T cd08265         227 GASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN-GKIVY  305 (384)
T ss_pred             CCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcC-CEEEE
Confidence            98679999988899999999999999988751123788888888887 899999999973 3578999999999 99999


Q ss_pred             ecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEE
Q 025101          173 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRC  252 (258)
Q Consensus       173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~  252 (258)
                      +|....  ..+++...+..+..++.+.....  ....+.++++++.++.++...++++.|+++++++|++...++...|+
T Consensus       306 ~g~~~~--~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~kv  381 (384)
T cd08265         306 IGRAAT--TVPLHLEVLQVRRAQIVGAQGHS--GHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKI  381 (384)
T ss_pred             ECCCCC--CCcccHHHHhhCceEEEEeeccC--CcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceE
Confidence            985432  23334444555677777764221  23568999999999988766567789999999999999766654477


Q ss_pred             EE
Q 025101          253 VI  254 (258)
Q Consensus       253 vi  254 (258)
                      ++
T Consensus       382 vv  383 (384)
T cd08265         382 TI  383 (384)
T ss_pred             Ee
Confidence            75

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.96  E-value=8.8e-28  Score=204.71  Aligned_cols=226  Identities=19%  Similarity=0.253  Sum_probs=185.4

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhh--hcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRI   99 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v   99 (258)
                      .|+|+||+.+++..++++|+++++++++.++.++.|||+++..  ..++.+|++++|+|+ |++|++++++++..|+ ++
T Consensus       139 ~g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~v  217 (398)
T TIGR01751       139 FGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NP  217 (398)
T ss_pred             CccceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eE
Confidence            5899999999999999999999999999999999999998754  467889999999997 9999999999999999 88


Q ss_pred             EEEcCCcchHHHHHhcCCceEEcCCCCC-------------------CccHHHHHHHhcCC-CCCEEEEecCChhhHHHH
Q 025101          100 IGVDVISEKFEIGKRFGVTEFVNSKNCG-------------------DKSVSQIIIDMTDG-GADYCFECVGLASLVQEA  159 (258)
Q Consensus       100 ~~~~~~~~~~~~~~~~g~~~vi~~~~~~-------------------~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~  159 (258)
                      +++++++++.+.++++|++.++|+++.+                   ...+.+.+.+.+++ ++|++|||+|... +..+
T Consensus       218 i~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~-~~~~  296 (398)
T TIGR01751       218 VAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRAT-FPTS  296 (398)
T ss_pred             EEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHH-HHHH
Confidence            8888899999999999999999876510                   01244567777776 8999999999755 8999


Q ss_pred             HHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHH
Q 025101          160 YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS  239 (258)
Q Consensus       160 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  239 (258)
                      +++++++ |+++.+|..... ...++...++.++.++.++..+.   ..++.++++++.++.+.  +.++++++++++++
T Consensus       297 ~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~--~~~~~~~~l~~~~~  369 (398)
T TIGR01751       297 VFVCRRG-GMVVICGGTTGY-NHDYDNRYLWMRQKRIQGSHFAN---LREAWEANRLVAKGRID--PTLSKVYPLEEIGQ  369 (398)
T ss_pred             HHhhccC-CEEEEEccccCC-CCCcCHHHHhhcccEEEccccCc---HHHHHHHHHHHHCCCcc--cceeeEEcHHHHHH
Confidence            9999999 999999965432 23344445556677777775443   24578899999999665  34678999999999


Q ss_pred             HHHHHhcCCee-EEEEeeC
Q 025101          240 AFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       240 a~~~~~~~~~~-k~vi~~~  257 (258)
                      +++.+.+++.. |+++++.
T Consensus       370 a~~~~~~~~~~gkvvv~~~  388 (398)
T TIGR01751       370 AHQDVHRNHHQGNVAVLVL  388 (398)
T ss_pred             HHHHHHcCCCCceEEEEeC
Confidence            99999888776 9988763

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.96  E-value=1.5e-27  Score=201.74  Aligned_cols=224  Identities=23%  Similarity=0.296  Sum_probs=183.7

Q ss_pred             cceeeeEEEecc--eEEEcCCCCCcc---chhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCe
Q 025101           24 SSFSEYTVLDIA--HVVKVDPTVPPN---RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR   98 (258)
Q Consensus        24 g~~~~~~~v~~~--~~~~~p~~~~~~---~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~   98 (258)
                      |+|+||+.+|..  .++++|++++++   +++.++.+++|||+++ ...++.+|++|+|.|+|++|++++|+++..|+.+
T Consensus       125 g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~  203 (375)
T cd08282         125 GGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASR  203 (375)
T ss_pred             CeeeeEEEeecccCcEEECCCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence            889999999976  899999999998   5677888899999997 7888999999999988999999999999999767


Q ss_pred             EEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChh-----------hHHHHHHhhhcCC
Q 025101           99 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS-----------LVQEAYACCRKGW  167 (258)
Q Consensus        99 v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~-----------~~~~~~~~l~~~~  167 (258)
                      |+++++++++.+.++++|+ ..+++++   +++.+.+.+.+++++|++|||+|...           ++..++++++++ 
T Consensus       204 vi~~~~~~~~~~~~~~~g~-~~v~~~~---~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-  278 (375)
T cd08282         204 VYVVDHVPERLDLAESIGA-IPIDFSD---GDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPG-  278 (375)
T ss_pred             EEEECCCHHHHHHHHHcCC-eEeccCc---ccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcC-
Confidence            8889999999999999998 4667776   67888888876667999999998762           488999999999 


Q ss_pred             ceEEEecccCCC-----------CceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCccccccccccc
Q 025101          168 GKTIVLGVDQPG-----------SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE  236 (258)
Q Consensus       168 G~~v~~g~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  236 (258)
                      |+++.+|.....           ....++...++.++.++.+....   .++.+.++++++.++.+++..+++++|++++
T Consensus       279 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~  355 (375)
T cd08282         279 GGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQAP---VKKYNRQLRDLILAGRAKPSFVVSHVISLED  355 (375)
T ss_pred             cEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEecCC---chhhHHHHHHHHHcCCCChHHcEEEEeeHHH
Confidence            999888864321           11234455566677777665422   2456888999999998876556789999999


Q ss_pred             HHHHHHHHhcCCeeEEEEee
Q 025101          237 INSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       237 ~~~a~~~~~~~~~~k~vi~~  256 (258)
                      +++|++.+.++...|+|+++
T Consensus       356 ~~~a~~~~~~~~~~kvvv~~  375 (375)
T cd08282         356 APEAYARFDKRLETKVVIKP  375 (375)
T ss_pred             HHHHHHHHhcCCceEEEeCC
Confidence            99999999988833998863

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=9e-28  Score=201.49  Aligned_cols=236  Identities=20%  Similarity=0.280  Sum_probs=191.1

Q ss_pred             CCCCccccCCCCceeeee----------------c---cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhh
Q 025101            3 RDQTSRFKDLRGETIHHF----------------V---SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA   63 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~----------------~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l   63 (258)
                      |.++..|+  +||+|+..                .   ..|+|++|+.++.+.++++|+++++++++++++++.|||+++
T Consensus        93 G~~v~~~~--~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~  170 (350)
T cd08274          93 GEGVDTAR--IGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML  170 (350)
T ss_pred             CCCCCCCC--CCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH
Confidence            34555677  89999863                1   148999999999999999999999999999999999999986


Q ss_pred             hhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-
Q 025101           64 WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-  141 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-  141 (258)
                       ...++++|++|||+|+ |++|++++++++..|+ +++++++++ +.+.++++|++.+++..+   ....+  ...+.+ 
T Consensus       171 -~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~~~~-~~~~~~~~g~~~~~~~~~---~~~~~--~~~~~~~  242 (350)
T cd08274         171 -ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAGAA-KEEAVRALGADTVILRDA---PLLAD--AKALGGE  242 (350)
T ss_pred             -hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCch-hhHHHHhcCCeEEEeCCC---ccHHH--HHhhCCC
Confidence             7788999999999997 9999999999999999 788888665 888889999876665544   33333  445555 


Q ss_pred             CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCC
Q 025101          142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE  221 (258)
Q Consensus       142 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  221 (258)
                      ++|++||++|+.. ++.++++++++ |+++.+|.... ...+++...++.+++++.++....   ...+.++++++.++.
T Consensus       243 ~~d~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~  316 (350)
T cd08274         243 PVDVVADVVGGPL-FPDLLRLLRPG-GRYVTAGAIAG-PVVELDLRTLYLKDLTLFGSTLGT---REVFRRLVRYIEEGE  316 (350)
T ss_pred             CCcEEEecCCHHH-HHHHHHHhccC-CEEEEecccCC-ccccCCHHHhhhcceEEEEeecCC---HHHHHHHHHHHHCCC
Confidence            8999999999865 89999999999 99999985522 223455566677888988876432   457889999999997


Q ss_pred             CCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          222 LELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ++  +.++++|+++++++|++.+..+... |+++++
T Consensus       317 l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         317 IR--PVVAKTFPLSEIREAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             cc--cccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            65  3467899999999999999887666 888864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.96  E-value=6.1e-28  Score=201.86  Aligned_cols=246  Identities=19%  Similarity=0.223  Sum_probs=196.7

Q ss_pred             CCCCccccCCCCceeeeec-cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-
Q 025101            3 RDQTSRFKDLRGETIHHFV-SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-   80 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-   80 (258)
                      |.++..|+  +||+|+++. +.|+|++|+.++.+.++++|+++++++++.+++++.|||+++.....+.+|++|||+|+ 
T Consensus        79 G~~v~~~~--~Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~  156 (341)
T cd08290          79 GSGVKSLK--PGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGAN  156 (341)
T ss_pred             CCCCCCCC--CCCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccch
Confidence            34455577  999999764 36899999999999999999999999999999999999999877778899999999986 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCc----chHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhH
Q 025101           81 GSIGLAVAEGARLCGATRIIGVDVIS----EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLV  156 (258)
Q Consensus        81 g~~G~~a~~l~~~~g~~~v~~~~~~~----~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~  156 (258)
                      |++|++++|+|+..|+ +++++++++    ++.+.++++|++.++++++.+..++...++...++++|++|||+|+.. +
T Consensus       157 g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~-~  234 (341)
T cd08290         157 SAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGGRPKLALNCVGGKS-A  234 (341)
T ss_pred             hHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCCCceEEEECcCcHh-H
Confidence            9999999999999999 888887766    568888899999999887610016777787776557999999999876 7


Q ss_pred             HHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC-------CCcHHHHHHHHHcCCCCCCcccc
Q 025101          157 QEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA-------KSDIPILLKRYMDKELELDKFVT  229 (258)
Q Consensus       157 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~  229 (258)
                      ...+++++++ |+++.+|..... ...++...++.++.++.+.....+..       ...+.++++++.++.+...  ..
T Consensus       235 ~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~  310 (341)
T cd08290         235 TELARLLSPG-GTMVTYGGMSGQ-PVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAP--PV  310 (341)
T ss_pred             HHHHHHhCCC-CEEEEEeccCCC-CcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCC--cc
Confidence            7899999999 999999854322 23344445577899988876433210       1247788899999976644  33


Q ss_pred             ccc---ccccHHHHHHHHhcCCee-EEEEee
Q 025101          230 HEM---KFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       230 ~~~---~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ..+   +++++++|++.+.++... |+++++
T Consensus       311 ~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~  341 (341)
T cd08290         311 EKVTDDPLEEFKDALANALKGGGGGKQVLVM  341 (341)
T ss_pred             cccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence            556   999999999999887766 998864

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.96  E-value=1e-27  Score=200.14  Aligned_cols=238  Identities=14%  Similarity=0.140  Sum_probs=187.2

Q ss_pred             CCCCccccCCCCceeeeec---cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCC-----CCE
Q 025101            3 RDQTSRFKDLRGETIHHFV---SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV-----GST   74 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----g~~   74 (258)
                      |.++..|+  +||+|+++.   ..|+|++|++++++.++++|+++++++++.+++++.|||+++....++.+     |++
T Consensus        74 G~~v~~~~--~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~  151 (336)
T TIGR02817        74 GDEVTLFK--PGDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRA  151 (336)
T ss_pred             CCCCCCCC--CCCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCE
Confidence            45666787  999999653   35899999999999999999999999999999999999999877788876     999


Q ss_pred             EEEEcc-CHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           75 VVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        75 vlI~G~-g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      |||+|+ |++|++++|+|+.. |+ +|+++++++++.++++++|+++++++.+    ++.+.+++..++++|+++|++++
T Consensus       152 vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~g~~~~~~~~~----~~~~~i~~~~~~~vd~vl~~~~~  226 (336)
T TIGR02817       152 LLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLELGAHHVIDHSK----PLKAQLEKLGLEAVSYVFSLTHT  226 (336)
T ss_pred             EEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHcCCCEEEECCC----CHHHHHHHhcCCCCCEEEEcCCc
Confidence            999986 99999999999998 99 8999999999999999999999988643    56777777543489999999877


Q ss_pred             hhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccC--CCCC-------CCcHHHHHHHHHcCCCC
Q 025101          153 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG--GLKA-------KSDIPILLKRYMDKELE  223 (258)
Q Consensus       153 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~g~~~  223 (258)
                      ...+...+++++++ |+++.++..     ..++...+..++.++.+....  ....       ...++++++++.++.++
T Consensus       227 ~~~~~~~~~~l~~~-G~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  300 (336)
T TIGR02817       227 DQHFKEIVELLAPQ-GRFALIDDP-----AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIR  300 (336)
T ss_pred             HHHHHHHHHHhccC-CEEEEEccc-----ccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCee
Confidence            66689999999999 999987522     123333344445665543222  1000       13467889999999665


Q ss_pred             CCccccccc---ccccHHHHHHHHhcCCee-EEEEe
Q 025101          224 LDKFVTHEM---KFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       224 ~~~~~~~~~---~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      ..  +++.+   +++++++|++.+.+++.. |++++
T Consensus       301 ~~--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       301 TT--LAETFGTINAANLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             cc--chhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence            32  33444   478999999999988776 88764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.96  E-value=2e-29  Score=223.37  Aligned_cols=238  Identities=18%  Similarity=0.217  Sum_probs=207.7

Q ss_pred             CCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE-ccCHHHHHHHHH
Q 025101           12 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-GLGSIGLAVAEG   90 (258)
Q Consensus        12 ~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~-G~g~~G~~a~~l   90 (258)
                      ..|.||+++...-++++.+.++.+++|.+|++.++++|+++|+.|.|||+||..+...++|++|||+ |+|++|++||.+
T Consensus      1493 ~~GrRvM~mvpAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIai 1572 (2376)
T KOG1202|consen 1493 ASGRRVMGMVPAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAI 1572 (2376)
T ss_pred             CCCcEEEEeeehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHH
Confidence            3699999998888999999999999999999999999999999999999999999999999999999 569999999999


Q ss_pred             HHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhc
Q 025101           91 ARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRK  165 (258)
Q Consensus        91 ~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~  165 (258)
                      |..+|+ .|+.++.|+||++++.+    +...++-|.++   .++...+...++| |+|+|++....+. ++.+++|++.
T Consensus      1573 ALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRd---tsFEq~vl~~T~GrGVdlVLNSLaeEk-LQASiRCLa~ 1647 (2376)
T KOG1202|consen 1573 ALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANSRD---TSFEQHVLWHTKGRGVDLVLNSLAEEK-LQASIRCLAL 1647 (2376)
T ss_pred             HHHcCC-EEEEecCcHHHHHHHHHhchhhhhhccccccc---ccHHHHHHHHhcCCCeeeehhhhhHHH-HHHHHHHHHh
Confidence            999999 99999999999999865    33567778888   8899999999999 9999999999888 9999999999


Q ss_pred             CCceEEEecccCCCCceeechHHHHhcCceEEecccCCCC--CCCcHHHHHHHHHcCCC--CCCcccccccccccHHHHH
Q 025101          166 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKEL--ELDKFVTHEMKFEEINSAF  241 (258)
Q Consensus       166 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~a~  241 (258)
                      . |+|..+|...-+.+.++.. ..+.||.+++|..+...-  ..+++.++..++++|.-  -+.|+.+++|+-.++++||
T Consensus      1648 ~-GRFLEIGKfDLSqNspLGM-avfLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AF 1725 (2376)
T KOG1202|consen 1648 H-GRFLEIGKFDLSQNSPLGM-AVFLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAF 1725 (2376)
T ss_pred             c-CeeeeecceecccCCcchh-hhhhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHH
Confidence            9 9999999765544444433 356779999998765432  23567788888887733  2777889999999999999


Q ss_pred             HHHhcCCee-EEEEee
Q 025101          242 DLLIKGKCL-RCVIWM  256 (258)
Q Consensus       242 ~~~~~~~~~-k~vi~~  256 (258)
                      +++.+++.+ |+|+++
T Consensus      1726 RfMasGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1726 RFMASGKHIGKVVIKV 1741 (2376)
T ss_pred             HHHhccCccceEEEEE
Confidence            999999999 999986

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=2.7e-27  Score=195.48  Aligned_cols=241  Identities=22%  Similarity=0.338  Sum_probs=193.6

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCH
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS   82 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~   82 (258)
                      |+++..++  +||+|+.+ ..|+|++|+.++++.++++|+++  ..++....++.++++++. ..++++|++++|+|+|+
T Consensus        67 G~~v~~~~--~Gd~V~~~-~~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~  140 (312)
T cd08269          67 GPGVRGLA--VGDRVAGL-SGGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGF  140 (312)
T ss_pred             CCCCcCCC--CCCEEEEe-cCCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCH
Confidence            34455677  89999965 36899999999999999999988  233322267889999864 78899999999998899


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHH
Q 025101           83 IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYA  161 (258)
Q Consensus        83 ~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~  161 (258)
                      +|++++++|+..|++.|+++++++++.++++++|++.+++.+.   .++.+.+.+++++ ++|+++||+|........++
T Consensus       141 vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~  217 (312)
T cd08269         141 IGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS---EAIVERVRELTGGAGADVVIEAVGHQWPLDLAGE  217 (312)
T ss_pred             HHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC---cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHH
Confidence            9999999999999933999999999999999999988888776   7788889888877 99999999987766899999


Q ss_pred             hhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC-CCCCcHHHHHHHHHcCCCCCCcccccccccccHHHH
Q 025101          162 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL-KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA  240 (258)
Q Consensus       162 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a  240 (258)
                      +++++ |+++.+|... .....++...+..++.++.+...... ...+.++++++++.++.+.....+.+.|+++++++|
T Consensus       218 ~l~~~-g~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a  295 (312)
T cd08269         218 LVAER-GRLVIFGYHQ-DGPRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDA  295 (312)
T ss_pred             HhccC-CEEEEEccCC-CCCcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHH
Confidence            99999 9999998654 23344454455667888777643322 123578899999999987765456688999999999


Q ss_pred             HHHHhcCCe--eEEEE
Q 025101          241 FDLLIKGKC--LRCVI  254 (258)
Q Consensus       241 ~~~~~~~~~--~k~vi  254 (258)
                      ++.+.+++.  +|+++
T Consensus       296 ~~~~~~~~~~~~~~~~  311 (312)
T cd08269         296 FEAARRRPDGFIKGVI  311 (312)
T ss_pred             HHHHHhCCCCceEEEe
Confidence            999988754  48876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.96  E-value=2.3e-27  Score=198.35  Aligned_cols=241  Identities=23%  Similarity=0.378  Sum_probs=192.3

Q ss_pred             CCCCccccCCCCceeeee---------------------------ccccceeeeEEEecceEEEcCCCCCccchhhcchh
Q 025101            3 RDQTSRFKDLRGETIHHF---------------------------VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG   55 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~---------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~   55 (258)
                      |.++..|+  +||+|++.                           ...|+|++|++++++.++++|++++.+++ +++.+
T Consensus        71 G~~v~~~~--~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~  147 (340)
T TIGR00692        71 GPGVEGIK--VGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEP  147 (340)
T ss_pred             CCCCCcCC--CCCEEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcch
Confidence            44556677  99999862                           24589999999999999999999998655 46668


Q ss_pred             hhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHH
Q 025101           56 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQII  135 (258)
Q Consensus        56 ~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i  135 (258)
                      +.+|++++  .....+|++++|.|+|++|++++|+++..|++.|+++++++++.+.++++|++.++++.+   .++.+.+
T Consensus       148 ~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~l  222 (340)
T TIGR00692       148 LGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK---EDVVKEV  222 (340)
T ss_pred             HHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc---cCHHHHH
Confidence            88998875  345678999999888999999999999999944888888888999999999988898877   7788888


Q ss_pred             HHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechH-HHHhcCceEEecccCCCCCCCcHHHH
Q 025101          136 IDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF-EVLHSGKILMGSLFGGLKAKSDIPIL  213 (258)
Q Consensus       136 ~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (258)
                      .+.+++ ++|++|||+|+...+...+++++++ |+++.+|.....  ..++.. .+..+++++.+....  ...+.+.++
T Consensus       223 ~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  297 (340)
T TIGR00692       223 ADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPGK--VTIDFTNKVIFKGLTIYGITGR--HMFETWYTV  297 (340)
T ss_pred             HHhcCCCCCCEEEECCCCHHHHHHHHHhhcCC-CEEEEEccCCCC--cccchhhhhhhcceEEEEEecC--CchhhHHHH
Confidence            888776 8999999999876689999999999 999999865322  222222 345567777665411  123457889


Q ss_pred             HHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          214 LKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       214 ~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      +++++++.+++.+.+.+.+++++++++++.+.+++..|+++++
T Consensus       298 ~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~gkvvv~~  340 (340)
T TIGR00692       298 SRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVILSL  340 (340)
T ss_pred             HHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            9999999887656677999999999999999877645998864

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.96  E-value=3e-27  Score=197.42  Aligned_cols=221  Identities=25%  Similarity=0.368  Sum_probs=182.6

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHH-cCCCeEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIG  101 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~-~g~~~v~~  101 (258)
                      .|+|+||+.++.+.++++|+++++++++.++.++.|||+++ ...++++|++|||+|+|++|++++++++. .|+ +|++
T Consensus       115 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~  192 (338)
T PRK09422        115 DGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIA  192 (338)
T ss_pred             cCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEE
Confidence            48999999999999999999999999999999999999987 77889999999999999999999999998 599 8999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      +++++++.++++++|++.++++++  ..++.+.+++..+ ++|.++++.++...+..++++++++ |+++.+|....  .
T Consensus       193 ~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~--~  266 (338)
T PRK09422        193 VDINDDKLALAKEVGADLTINSKR--VEDVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPPE--S  266 (338)
T ss_pred             EeCChHHHHHHHHcCCcEEecccc--cccHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCC-CEEEEEeeCCC--C
Confidence            999999999999999988888753  1356677777765 6896665556666699999999999 99999986532  2


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      .+++...+..+..++.++..+.   .+.++++++++.+|.++.  .+ ..++++++++|++.+.++... |+++.+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gkvvv~~~  337 (338)
T PRK09422        267 MDLSIPRLVLDGIEVVGSLVGT---RQDLEEAFQFGAEGKVVP--KV-QLRPLEDINDIFDEMEQGKIQGRMVIDFT  337 (338)
T ss_pred             ceecHHHHhhcCcEEEEecCCC---HHHHHHHHHHHHhCCCCc--cE-EEEcHHHHHHHHHHHHcCCccceEEEecC
Confidence            3445555566788887764322   456889999999997643  35 468999999999999988777 9998765

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.96  E-value=3.2e-27  Score=197.54  Aligned_cols=241  Identities=21%  Similarity=0.334  Sum_probs=191.9

Q ss_pred             CCCCccccCCCCceeeeec---------------------------cccceeeeEEEecceEEEcCCCCCccchhhcchh
Q 025101            3 RDQTSRFKDLRGETIHHFV---------------------------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG   55 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---------------------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~   55 (258)
                      |.++..++  +||+|++..                           .+|+|++|+.++++.++++|+++++++++.+ .+
T Consensus        73 G~~v~~~~--~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~  149 (341)
T PRK05396         73 GSEVTGFK--VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DP  149 (341)
T ss_pred             CCCCCcCC--CCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hH
Confidence            44556677  899988531                           3589999999999999999999999888755 46


Q ss_pred             hhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHH
Q 025101           56 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQII  135 (258)
Q Consensus        56 ~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i  135 (258)
                      +.++++++..  ...+|++|+|.|+|++|++++|+++.+|+.+|+++++++++.++++++|++.++++++   .++.+.+
T Consensus       150 ~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~~~~  224 (341)
T PRK05396        150 FGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAK---EDLRDVM  224 (341)
T ss_pred             HHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc---ccHHHHH
Confidence            6666665432  3458999999988999999999999999856888888899999999999999999887   6788888


Q ss_pred             HHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHH
Q 025101          136 IDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILL  214 (258)
Q Consensus       136 ~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (258)
                      ++++++ ++|+||||.|+...++.++++++++ |+++.+|.....  .+++...+..+++++.++....  ..+.+..++
T Consensus       225 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~  299 (341)
T PRK05396        225 AELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPGD--MAIDWNKVIFKGLTIKGIYGRE--MFETWYKMS  299 (341)
T ss_pred             HHhcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCC--CcccHHHHhhcceEEEEEEccC--ccchHHHHH
Confidence            888776 8999999999877799999999999 999999865432  2333455667788887764221  134566788


Q ss_pred             HHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEeeC
Q 025101          215 KRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  257 (258)
Q Consensus       215 ~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~  257 (258)
                      +++.++ +++.+.+.+.++++++.+|++.+..+...|++++++
T Consensus       300 ~~~~~~-~~~~~~~~~~~~l~~~~~a~~~~~~~~~gk~vv~~~  341 (341)
T PRK05396        300 ALLQSG-LDLSPIITHRFPIDDFQKGFEAMRSGQSGKVILDWD  341 (341)
T ss_pred             HHHHcC-CChhHheEEEEeHHHHHHHHHHHhcCCCceEEEecC
Confidence            888888 555556778999999999999988876339999764

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=1.8e-27  Score=196.00  Aligned_cols=234  Identities=18%  Similarity=0.242  Sum_probs=188.8

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |.++..|+  +||+|+++...|+|++|+.++.+.++++|+++++++++++++.+.|||+++...... +|++++|+|+ |
T Consensus        67 G~~v~~~~--~Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~  143 (305)
T cd08270          67 AADGSGPA--VGARVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASG  143 (305)
T ss_pred             CCCCCCCC--CCCEEEEecCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCc
Confidence            44556677  999999876679999999999999999999999999999999999999987655544 5999999987 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYA  161 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~  161 (258)
                      ++|++++++++..|+ +|+++++++++.+.++++|++.+++..+    +       ..++++|+++|++|+.. +..+++
T Consensus       144 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~----~-------~~~~~~d~vl~~~g~~~-~~~~~~  210 (305)
T cd08270         144 GVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVGGS----E-------LSGAPVDLVVDSVGGPQ-LARALE  210 (305)
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEeccc----c-------ccCCCceEEEECCCcHH-HHHHHH
Confidence            999999999999999 8999999999999999999876654322    1       12237999999999875 899999


Q ss_pred             hhhcCCceEEEecccCCCCceeechHHHHh--cCceEEecccCC-CCCCCcHHHHHHHHHcCCCCCCcccccccccccHH
Q 025101          162 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLH--SGKILMGSLFGG-LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN  238 (258)
Q Consensus       162 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  238 (258)
                      +++++ |+++.+|... .....++...+..  ++.++.++.... ....+.+..+++++.++.++..  +.+++++++++
T Consensus       211 ~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~  286 (305)
T cd08270         211 LLAPG-GTVVSVGSSS-GEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDPR--IGWRGSWTEID  286 (305)
T ss_pred             HhcCC-CEEEEEeccC-CCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCCccce--eccEEcHHHHH
Confidence            99999 9999998654 2233344444433  578887776442 1113467888999999977643  66899999999


Q ss_pred             HHHHHHhcCCee-EEEEee
Q 025101          239 SAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       239 ~a~~~~~~~~~~-k~vi~~  256 (258)
                      +|++.+.++... |+++.+
T Consensus       287 ~a~~~~~~~~~~gkvvi~~  305 (305)
T cd08270         287 EAAEALLARRFRGKAVLDV  305 (305)
T ss_pred             HHHHHHHcCCCCceEEEeC
Confidence            999999888776 988864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.96  E-value=3.6e-27  Score=197.07  Aligned_cols=218  Identities=22%  Similarity=0.346  Sum_probs=176.5

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||++++++.++++|++++.++++. ..++.+||+++...... +|++|||.|+|++|++++|+++.+|+.+++++
T Consensus       119 ~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~  196 (339)
T cd08232         119 QGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVAT  196 (339)
T ss_pred             CCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence            58999999999999999999999999876 56888999987655555 89999999889999999999999998678999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhc-CC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCC
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT-DG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  180 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~-~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  180 (258)
                      ++++++.++++++|++.+++.++   .++    .+.. .. ++|++||++|+...++..+++++++ |+++.+|...  .
T Consensus       197 ~~s~~~~~~~~~~g~~~vi~~~~---~~~----~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~-G~~v~~g~~~--~  266 (339)
T cd08232         197 DLADAPLAVARAMGADETVNLAR---DPL----AAYAADKGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLG--G  266 (339)
T ss_pred             CCCHHHHHHHHHcCCCEEEcCCc---hhh----hhhhccCCCccEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC--C
Confidence            98898889999999988998876   332    2222 22 6999999999766689999999999 9999998543  2


Q ss_pred             ceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ....+...++.+++++.+...    ..+.+.++++++.++.+++.+.+.++|+++++++|++.+.++... |+|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  339 (339)
T cd08232         267 PVPLPLNALVAKELDLRGSFR----FDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF  339 (339)
T ss_pred             CccCcHHHHhhcceEEEEEec----CHHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence            233344444567788877642    235688899999999877666677899999999999999877656 999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.96  E-value=1.1e-27  Score=199.22  Aligned_cols=244  Identities=13%  Similarity=0.190  Sum_probs=192.2

Q ss_pred             CCCCccccCCCCceeeeec-cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-
Q 025101            3 RDQTSRFKDLRGETIHHFV-SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-   80 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-   80 (258)
                      |.++..++  +||+|+... +.|+|++|+.++...++++|+++++++++.+++++.+||.++.....+.+|++++|+|+ 
T Consensus        73 G~~v~~~~--~Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~  150 (327)
T PRK10754         73 GSGVKHIK--VGDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAA  150 (327)
T ss_pred             CCCCCCCC--CCCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCC
Confidence            33455566  899998542 45899999999999999999999999999998899999998877788999999999975 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHH
Q 025101           81 GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEA  159 (258)
Q Consensus        81 g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~  159 (258)
                      |.+|++++++++..|+ +|+++++++++.++++++|++.+++.++   .++.+.+++.+++ ++|++|||+|+.. +...
T Consensus       151 g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~  225 (327)
T PRK10754        151 GGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVINYRE---ENIVERVKEITGGKKVRVVYDSVGKDT-WEAS  225 (327)
T ss_pred             cHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEcCCC---CcHHHHHHHHcCCCCeEEEEECCcHHH-HHHH
Confidence            9999999999999999 8999999999999999999988888877   7788888888887 8999999999865 8889


Q ss_pred             HHhhhcCCceEEEecccCCCCceeechHHHHhcCce------EEecccCCC-CCCCcHHHHHHHHHcCCCCCCccccccc
Q 025101          160 YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKI------LMGSLFGGL-KAKSDIPILLKRYMDKELELDKFVTHEM  232 (258)
Q Consensus       160 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~  232 (258)
                      +++++++ |+++.+|..... ....+...+..++..      +.+.. ... ...+.+.++++++.+|.+++..+..+.|
T Consensus       226 ~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~  302 (327)
T PRK10754        226 LDCLQRR-GLMVSFGNASGP-VTGVNLGILNQKGSLYVTRPSLQGYI-TTREELTEASNELFSLIASGVIKVDVAEQQKF  302 (327)
T ss_pred             HHHhccC-CEEEEEccCCCC-CCCcCHHHHhccCceEEecceeeccc-CCHHHHHHHHHHHHHHHHCCCeeeecccCcEE
Confidence            9999999 999999865421 112222222222211      11110 000 0012345688899999887655566899


Q ss_pred             ccccHHHHHHHHhcCCee-EEEEee
Q 025101          233 KFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       233 ~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +++++.+|++.++++... |+|+++
T Consensus       303 ~~~~~~~a~~~~~~~~~~~~~~~~~  327 (327)
T PRK10754        303 PLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_pred             cHHHHHHHHHHHHcCCCcceEEEeC
Confidence            999999999999888766 999864

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.96  E-value=5.6e-27  Score=197.70  Aligned_cols=223  Identities=25%  Similarity=0.422  Sum_probs=178.9

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+.+++..++++|++++++++++.. ++.++++++ ...++.+|++|+|+|+|++|++++++++..|+..++++
T Consensus       135 ~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~  212 (364)
T PLN02702        135 HGSLANQVVHPADLCFKLPENVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIV  212 (364)
T ss_pred             CCcccceEEcchHHeEECCCCCCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            5899999999999999999999999887633 555688876 77888999999999999999999999999999668888


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHh---cCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM---TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~---~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      ++++++.+.++++|++.++++.. ..+++.+.+.++   .++++|+|||++|....+..++++++++ |+++.+|.... 
T Consensus       213 ~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-  289 (364)
T PLN02702        213 DVDDERLSVAKQLGADEIVLVST-NIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHN-  289 (364)
T ss_pred             CCCHHHHHHHHHhCCCEEEecCc-ccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC-
Confidence            88889999999999987766432 014566666554   2338999999999766699999999999 99999986533 


Q ss_pred             CceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCccccccccc--ccHHHHHHHHhcCCee-EEEEe
Q 025101          180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF--EEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                       ........+..+++++.+++..    ...+..+++++.++.+.+.++++++|++  +++++|++.+.+++.. |+++.
T Consensus       290 -~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~  363 (364)
T PLN02702        290 -EMTVPLTPAAAREVDVVGVFRY----RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN  363 (364)
T ss_pred             -CCcccHHHHHhCccEEEEeccC----hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence             2334455567778898887532    3568889999999988766667788555  7999999998887665 99885

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=2.4e-27  Score=197.92  Aligned_cols=216  Identities=22%  Similarity=0.346  Sum_probs=180.9

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      ..|+|+||+.++++.++++|+++++++++.+++.+.+||+++. ...+.+|++++|.|+|++|++++++++..|+ +|++
T Consensus       121 ~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~-~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~  198 (337)
T cd05283         121 TQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLK-RNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTA  198 (337)
T ss_pred             CCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEE
Confidence            3589999999999999999999999999999999999999864 4568999999999889999999999999999 8999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      +++++++.++++++|++.+++.++   .+....    .++++|++|||+|....+..++++++++ |+++.+|.....  
T Consensus       199 ~~~~~~~~~~~~~~g~~~vi~~~~---~~~~~~----~~~~~d~v~~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--  268 (337)
T cd05283         199 FSRSPSKKEDALKLGADEFIATKD---PEAMKK----AAGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEEP--  268 (337)
T ss_pred             EcCCHHHHHHHHHcCCcEEecCcc---hhhhhh----ccCCceEEEECCCCcchHHHHHHHhcCC-CEEEEEeccCCC--
Confidence            999999999999999988888765   333221    1238999999999875589999999999 999999865432  


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEe
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      ..++...++.+++++.++....   .++++.+++++.++.++.  .+ +.|+++++++||+.+++++.. |+|++
T Consensus       269 ~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~  337 (337)
T cd05283         269 LPVPPFPLIFGRKSVAGSLIGG---RKETQEMLDFAAEHGIKP--WV-EVIPMDGINEALERLEKGDVRYRFVLD  337 (337)
T ss_pred             CccCHHHHhcCceEEEEecccC---HHHHHHHHHHHHhCCCcc--ce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence            2445556677899999986543   467889999999997653  34 789999999999999998877 88874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.96  E-value=7.3e-27  Score=194.77  Aligned_cols=219  Identities=26%  Similarity=0.456  Sum_probs=179.9

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|++|+.++++.++++|+++++.+++.+ .++.++++++ ...++++|++|||+|+|.+|++++++++..|+++|+++
T Consensus       113 ~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~  190 (334)
T cd08234         113 NGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVA  190 (334)
T ss_pred             CCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence            589999999999999999999999998876 6788999987 78899999999999889999999999999999448889


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      ++++++.+.++++|++.+++..+   .+....  +.+.+ ++|++||++|....+..++++++++ |+++.+|.......
T Consensus       191 ~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~--~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~  264 (334)
T cd08234         191 EPNEEKLELAKKLGATETVDPSR---EDPEAQ--KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDAR  264 (334)
T ss_pred             CCCHHHHHHHHHhCCeEEecCCC---CCHHHH--HHhcCCCCcEEEECCCChHHHHHHHHHHhcC-CEEEEEecCCCCCC
Confidence            99999999999999888888776   555444  33344 8999999998766689999999999 99999986543333


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEE
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi  254 (258)
                      .+++...+..+++++.+....    .+.++++++++.++.+...+.+..+++++++.+|++.+.+ ... |+++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi  333 (334)
T cd08234         265 VSISPFEIFQKELTIIGSFIN----PYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV  333 (334)
T ss_pred             cccCHHHHHhCCcEEEEeccC----HHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence            445555555567888776532    3568889999999987765556688999999999999988 555 8876

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05281 TDH Threonine dehydrogenase

Probab=99.96  E-value=9.9e-27  Score=194.56  Aligned_cols=221  Identities=24%  Similarity=0.395  Sum_probs=178.4

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|++|++++.+.++++|++++.+.+ +++.++.++++++.  ....+|++|||+|+|++|++++|+++..|..+|+++
T Consensus       118 ~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~  194 (341)
T cd05281         118 DGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIAS  194 (341)
T ss_pred             CCcceEEEEechHHcEECcCCCCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence            589999999999999999999998555 55557888888754  455789999999889999999999999998568888


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      +++++|.+.++++|++++++.+.   .++. .+.+..++ ++|++|||+|+......++++++++ |+++.+|.....  
T Consensus       195 ~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--  267 (341)
T cd05281         195 DPNPYRLELAKKMGADVVINPRE---EDVV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPGP--  267 (341)
T ss_pred             CCCHHHHHHHHHhCcceeeCccc---ccHH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCCC--
Confidence            88889999999999988888776   6677 78887776 9999999999877689999999999 999999865432  


Q ss_pred             eeechH-HHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          182 LSLSSF-EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       182 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ..++.. ....++..+.+....  ...+.+.++++++.++.+.+.+.+...++++++++||+.+.+++ . |+++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~~  341 (341)
T cd05281         268 VDIDLNNLVIFKGLTVQGITGR--KMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLYP  341 (341)
T ss_pred             cccccchhhhccceEEEEEecC--CcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCC-CceEEecC
Confidence            222222 245567777765421  12356788999999998776666778899999999999999888 6 998864

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=5.1e-27  Score=194.57  Aligned_cols=218  Identities=22%  Similarity=0.319  Sum_probs=177.0

Q ss_pred             ceeeee-ccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHH
Q 025101           15 ETIHHF-VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL   93 (258)
Q Consensus        15 ~~v~~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~   93 (258)
                      +++.++ ...|+|++|++++.+.++++|++++.++++.+ .++.++++. .+..++++|++|||+|+|++|++++|+++.
T Consensus       100 ~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~-~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~  177 (319)
T cd08242         100 RTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEI-LEQVPITPGDKVAVLGDGKLGLLIAQVLAL  177 (319)
T ss_pred             CcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence            334443 23589999999999999999999999888864 355666664 477889999999999999999999999999


Q ss_pred             cCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEE
Q 025101           94 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIV  172 (258)
Q Consensus        94 ~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  172 (258)
                      +|+ +|++++.++++.++++++|++.++++++   .         +.+ ++|++|||+|+...+..++++++++ |+++.
T Consensus       178 ~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~---~---------~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~  243 (319)
T cd08242         178 TGP-DVVLVGRHSEKLALARRLGVETVLPDEA---E---------SEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVL  243 (319)
T ss_pred             cCC-eEEEEcCCHHHHHHHHHcCCcEEeCccc---c---------ccCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEE
Confidence            999 7999999999999999999988877654   1         233 8999999999876689999999999 99998


Q ss_pred             ecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEE
Q 025101          173 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRC  252 (258)
Q Consensus       173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~  252 (258)
                      .+....  ...++...+..++.++.+...+      .++++++++.++.+++.+.+++.|+++++++||+.+.++...|+
T Consensus       244 ~~~~~~--~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~  315 (319)
T cd08242         244 KSTYAG--PASFDLTKAVVNEITLVGSRCG------PFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPGALKV  315 (319)
T ss_pred             EcccCC--CCccCHHHheecceEEEEEecc------cHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCCceEE
Confidence            765432  2344555566778888877422      38889999999988766668899999999999999987765599


Q ss_pred             EEee
Q 025101          253 VIWM  256 (258)
Q Consensus       253 vi~~  256 (258)
                      ++++
T Consensus       316 vi~~  319 (319)
T cd08242         316 LLRP  319 (319)
T ss_pred             EeCC
Confidence            8864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=7.7e-27  Score=193.27  Aligned_cols=234  Identities=22%  Similarity=0.325  Sum_probs=188.5

Q ss_pred             cccCCCCceeeeecc------ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-
Q 025101            8 RFKDLRGETIHHFVS------VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-   80 (258)
Q Consensus         8 ~~~~~~G~~v~~~~~------~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-   80 (258)
                      .++  +||+|+++..      .|+|++|+.+++..++++|+++++++++.+++++.+||+++.....+++|++|||+|+ 
T Consensus        75 ~~~--~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~  152 (320)
T cd08243          75 TFT--PGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGT  152 (320)
T ss_pred             CCC--CCCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            456  8999997642      3899999999999999999999999999999999999999887788999999999997 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHH
Q 025101           81 GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAY  160 (258)
Q Consensus        81 g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~  160 (258)
                      |++|++++|+|+..|+ +|+++++++++.+.++++|++++++. .   .++.+.+.+. +.++|+++|++|+.. +...+
T Consensus       153 g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~-~---~~~~~~i~~~-~~~~d~vl~~~~~~~-~~~~~  225 (320)
T cd08243         153 SSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID-D---GAIAEQLRAA-PGGFDKVLELVGTAT-LKDSL  225 (320)
T ss_pred             ChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec-C---ccHHHHHHHh-CCCceEEEECCChHH-HHHHH
Confidence            9999999999999999 89999999999999999999887754 4   4677778777 448999999999865 89999


Q ss_pred             HhhhcCCceEEEecccCCCCce-eechHHH--HhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccH
Q 025101          161 ACCRKGWGKTIVLGVDQPGSQL-SLSSFEV--LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI  237 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  237 (258)
                      ++++++ |+++.+|........ .......  +.+++++.++...... ...+.++++++.++.++.  ..++.++++++
T Consensus       226 ~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  301 (320)
T cd08243         226 RHLRPG-GIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVP-QTPLQELFDFVAAGHLDI--PPSKVFTFDEI  301 (320)
T ss_pred             HHhccC-CEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhhhh-HHHHHHHHHHHHCCceec--ccccEEcHHHH
Confidence            999999 999999964332211 1112222  2557777666533221 235778889999997654  35688999999


Q ss_pred             HHHHHHHhcCCee-EEEE
Q 025101          238 NSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       238 ~~a~~~~~~~~~~-k~vi  254 (258)
                      ++|++.+.++... |+++
T Consensus       302 ~~a~~~~~~~~~~~kvvv  319 (320)
T cd08243         302 VEAHAYMESNRAFGKVVV  319 (320)
T ss_pred             HHHHHHHHhCCCCCcEEe
Confidence            9999999887666 7765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.96  E-value=1.3e-26  Score=193.59  Aligned_cols=236  Identities=22%  Similarity=0.312  Sum_probs=186.4

Q ss_pred             CCCCccccCCCCceeeeecc--------ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCC-----
Q 025101            3 RDQTSRFKDLRGETIHHFVS--------VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANV-----   69 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~--------~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~-----   69 (258)
                      |+++..|+  +||+|+++..        +|+|++|++++.+.++++|+++++++++.+++++.|||+++....++     
T Consensus        70 G~~v~~~~--~Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~  147 (339)
T cd08249          70 GSGVTRFK--VGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPP  147 (339)
T ss_pred             CCCcCcCC--CCCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCC
Confidence            45566677  9999997643        48999999999999999999999999999999999999987665544     


Q ss_pred             -----CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           70 -----EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        70 -----~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                           .++++++|+|+ |++|++++++++..|+ +|++++ ++++.+.++++|++++++.++   .++.+.+++.+++++
T Consensus       148 ~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~~g~~~v~~~~~---~~~~~~l~~~~~~~~  222 (339)
T cd08249         148 KPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKSLGADAVFDYHD---PDVVEDIRAATGGKL  222 (339)
T ss_pred             CCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHhcCCCEEEECCC---chHHHHHHHhcCCCe
Confidence                 78999999997 8999999999999999 888887 568999999999999999887   778888887776689


Q ss_pred             CEEEEecCChhhHHHHHHhhhc--CCceEEEecccCCCCceeechHHHHhcCceEEecccC---------CCCCCCcHHH
Q 025101          144 DYCFECVGLASLVQEAYACCRK--GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG---------GLKAKSDIPI  212 (258)
Q Consensus       144 d~v~d~~g~~~~~~~~~~~l~~--~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  212 (258)
                      |++||++|.+..+..+++++++  + |+++.+|......  .+      ..+.++......         .......+.+
T Consensus       223 d~vl~~~g~~~~~~~~~~~l~~~~~-g~~v~~g~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (339)
T cd08249         223 RYALDCISTPESAQLCAEALGRSGG-GKLVSLLPVPEET--EP------RKGVKVKFVLGYTVFGEIPEDREFGEVFWKY  293 (339)
T ss_pred             eEEEEeeccchHHHHHHHHHhccCC-CEEEEecCCCccc--cC------CCCceEEEEEeeeecccccccccchHHHHHH
Confidence            9999999985559999999999  9 9999998654321  01      112222111111         1111245677


Q ss_pred             HHHHHHcCCCCCCcccccccc--cccHHHHHHHHhcCC-ee-EEEEee
Q 025101          213 LLKRYMDKELELDKFVTHEMK--FEEINSAFDLLIKGK-CL-RCVIWM  256 (258)
Q Consensus       213 ~~~~~~~g~~~~~~~~~~~~~--~~~~~~a~~~~~~~~-~~-k~vi~~  256 (258)
                      +++++.++.+.+.+  ...++  ++++++|++.+..++ .. |+++++
T Consensus       294 ~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         294 LPELLEEGKLKPHP--VRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             HHHHHHcCCccCCC--ceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence            88899999777653  34556  999999999999887 66 999864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=2e-26  Score=190.37  Aligned_cols=243  Identities=19%  Similarity=0.258  Sum_probs=197.1

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |+++..++  +||+|+++...|+|++|+.++.+.++++|++++.++++.++..+.++++++.+..++.+|++|+|+|+ |
T Consensus        70 g~~~~~~~--~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g  147 (320)
T cd05286          70 GPGVTGFK--VGDRVAYAGPPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAG  147 (320)
T ss_pred             CCCCCCCC--CCCEEEEecCCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence            34555677  99999976436899999999999999999999999999999999999999877888999999999995 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAY  160 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~  160 (258)
                      ++|++++++++..|+ +|+++++++++.+.++++|++.+++..+   .++.+.+.+.+.+ ++|.++||+++.. ...++
T Consensus       148 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~  222 (320)
T cd05286         148 GVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYRD---EDFVERVREITGGRGVDVVYDGVGKDT-FEGSL  222 (320)
T ss_pred             hHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCCc---hhHHHHHHHHcCCCCeeEEEECCCcHh-HHHHH
Confidence            999999999999999 8999999999999999999988888776   6788888888776 8999999999864 88999


Q ss_pred             HhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC-----CCcHHHHHHHHHcCCCCCCcccccccccc
Q 025101          161 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA-----KSDIPILLKRYMDKELELDKFVTHEMKFE  235 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  235 (258)
                      ++++++ |+++.+|..... ...++...+..+++++.+........     .+.+.++++++.++.+...  .++.|+++
T Consensus       223 ~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~  298 (320)
T cd05286         223 DSLRPR-GTLVSFGNASGP-VPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVE--IGKRYPLA  298 (320)
T ss_pred             HhhccC-cEEEEEecCCCC-CCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCc--ccceEcHH
Confidence            999999 999999865432 22233333446788876543222211     1234567888888866543  56889999


Q ss_pred             cHHHHHHHHhcCCee-EEEEee
Q 025101          236 EINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       236 ~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ++++|++.+..+... |+++++
T Consensus       299 ~~~~a~~~~~~~~~~~~vv~~~  320 (320)
T cd05286         299 DAAQAHRDLESRKTTGKLLLIP  320 (320)
T ss_pred             HHHHHHHHHHcCCCCceEEEeC
Confidence            999999999887766 888764

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.95  E-value=3.6e-27  Score=183.09  Aligned_cols=242  Identities=21%  Similarity=0.266  Sum_probs=195.3

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecce--EEEcCC--CCCccc-hhhcchhhhhhhhhhhhhcCCCCCCEEEE
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH--VVKVDP--TVPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVI   77 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~--~~~~p~--~~~~~~-aa~~~~~~~ta~~~l~~~~~~~~g~~vlI   77 (258)
                      .++.|.+.  +||.|++..   +|.||.+++...  .+++|.  +.++.. ..++..+..|||..+.+...+++|++|+|
T Consensus        85 ~S~~~~~~--~GD~v~g~~---gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~V  159 (343)
T KOG1196|consen   85 DSGHPNYK--KGDLVWGIV---GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFV  159 (343)
T ss_pred             ecCCCCCC--cCceEEEec---cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEE
Confidence            35788898  999999887   599999997754  345544  343333 34466789999999999999999999999


Q ss_pred             Ecc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCc-cHHHHHHHhcCCCCCEEEEecCChh
Q 025101           78 FGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDK-SVSQIIIDMTDGGADYCFECVGLAS  154 (258)
Q Consensus        78 ~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~-~~~~~i~~~~~~~~d~v~d~~g~~~  154 (258)
                      .|| |++|+++.|+|+.+|+ +|++.+.+++|.++++. +|.+..+||++   + +..+.+++..++++|+-||++|+..
T Consensus       160 SaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~---e~~~~~aL~r~~P~GIDiYfeNVGG~~  235 (343)
T KOG1196|consen  160 SAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE---ESDLSAALKRCFPEGIDIYFENVGGKM  235 (343)
T ss_pred             eeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccC---ccCHHHHHHHhCCCcceEEEeccCcHH
Confidence            986 9999999999999999 99999999999999865 79999999999   6 8889999988889999999999988


Q ss_pred             hHHHHHHhhhcCCceEEEecccCC---CCceee-chHHHHhcCceEEecccCCCCC--CCcHHHHHHHHHcCCCCCCccc
Q 025101          155 LVQEAYACCRKGWGKTIVLGVDQP---GSQLSL-SSFEVLHSGKILMGSLFGGLKA--KSDIPILLKRYMDKELELDKFV  228 (258)
Q Consensus       155 ~~~~~~~~l~~~~G~~v~~g~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~  228 (258)
                       ++..+..++.. |+++.||..+.   ..+..+ +...++.|++++.|+.......  .+-+..+..++.+|+++...-+
T Consensus       236 -lDavl~nM~~~-gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi  313 (343)
T KOG1196|consen  236 -LDAVLLNMNLH-GRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDI  313 (343)
T ss_pred             -HHHHHHhhhhc-cceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehhH
Confidence             99999999998 99999997652   111122 2344678899999976444321  2445677788899988877544


Q ss_pred             ccccccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          229 THEMKFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       229 ~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      .  -.++....||.-+.+++++ |.++.+.
T Consensus       314 ~--~Glen~P~A~vglf~GkNvGKqiv~va  341 (343)
T KOG1196|consen  314 A--DGLENGPSALVGLFHGKNVGKQLVKVA  341 (343)
T ss_pred             H--HHHhccHHHHHHHhccCcccceEEEee
Confidence            3  3599999999999999998 9998875

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.95  E-value=1.6e-26  Score=192.05  Aligned_cols=238  Identities=17%  Similarity=0.228  Sum_probs=182.0

Q ss_pred             ccccCCCCceeeeec------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhc--C-CCCCCEEEE
Q 025101            7 SRFKDLRGETIHHFV------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA--N-VEVGSTVVI   77 (258)
Q Consensus         7 ~~~~~~~G~~v~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~--~-~~~g~~vlI   77 (258)
                      ..|+  +||+|+...      ..|+|+||+.++++.++++|+++++++++.+++++.||++++....  . ...+++|||
T Consensus        75 ~~~~--~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI  152 (326)
T cd08289          75 PRFK--PGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLV  152 (326)
T ss_pred             CCCC--CCCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence            3466  899998653      3689999999999999999999999999999999999998864332  2 334789999


Q ss_pred             Ecc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhH
Q 025101           78 FGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLV  156 (258)
Q Consensus        78 ~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~  156 (258)
                      +|+ |++|++++|+|+..|+ +|+++++++++.++++++|++.+++.++   . ..+.+.+..++++|++||++|+.. +
T Consensus       153 ~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~-~~~~~~~~~~~~~d~vld~~g~~~-~  226 (326)
T cd08289         153 TGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKEVIPREE---L-QEESIKPLEKQRWAGAVDPVGGKT-L  226 (326)
T ss_pred             EcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCEEEcchh---H-HHHHHHhhccCCcCEEEECCcHHH-H
Confidence            997 9999999999999999 8999999999999999999988888765   3 345566654348999999999855 8


Q ss_pred             HHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC---CCcccccccc
Q 025101          157 QEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE---LDKFVTHEMK  233 (258)
Q Consensus       157 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~  233 (258)
                      ...+++++++ |+++.+|.... ...+.+...++.+++++.+....... ......+++.+.+ .+.   ....+.++|+
T Consensus       227 ~~~~~~l~~~-G~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  302 (326)
T cd08289         227 AYLLSTLQYG-GSVAVSGLTGG-GEVETTVFPFILRGVNLLGIDSVECP-MELRRRIWRRLAT-DLKPTQLLNEIKQEIT  302 (326)
T ss_pred             HHHHHHhhcC-CEEEEEeecCC-CCCCcchhhhhhccceEEEEEeEecC-chHHHHHHHHHHh-hcCccccccccceEee
Confidence            9999999999 99999996532 22333344555778998887422110 1122333333332 122   2223578999


Q ss_pred             cccHHHHHHHHhcCCee-EEEEee
Q 025101          234 FEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       234 ~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ++++++||+.+.+++.. |+++++
T Consensus       303 l~~~~~a~~~~~~~~~~gkvvv~~  326 (326)
T cd08289         303 LDELPEALKQILQGRVTGRTVVKL  326 (326)
T ss_pred             HHHHHHHHHHHhcCcccceEEEeC
Confidence            99999999999988777 988763

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.95  E-value=6.2e-27  Score=180.81  Aligned_cols=244  Identities=19%  Similarity=0.243  Sum_probs=190.0

Q ss_pred             CCCCccccCCCCceeeeec-cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-
Q 025101            3 RDQTSRFKDLRGETIHHFV-SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-   80 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-   80 (258)
                      |+++..|+  +||+|.... +.|+|++|.+.+++.++++++.++++.||++..+.+|||.+|.....+.+|++|+-.|+ 
T Consensus        93 Gs~vkgfk--~Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNgan  170 (354)
T KOG0025|consen   93 GSNVKGFK--PGDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGAN  170 (354)
T ss_pred             cCCcCccC--CCCeEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcc
Confidence            56777788  999998553 45999999999999999999999999999999999999999988999999999888887 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcchHH----HHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhh
Q 025101           81 GSIGLAVAEGARLCGATRIIGVDVISEKFE----IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL  155 (258)
Q Consensus        81 g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~----~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~  155 (258)
                      +++|++.+|+||++|+ +-+-+.|+....+    .++.+||++||...++.+.+..   +..... .+.+.|||+|+.. 
T Consensus       171 S~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~---k~~~~~~~prLalNcVGGks-  245 (354)
T KOG0025|consen  171 SGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMK---KFKGDNPRPRLALNCVGGKS-  245 (354)
T ss_pred             cHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhh---hhhccCCCceEEEeccCchh-
Confidence            8999999999999999 5555555555444    3566999999966552211111   111122 7999999999988 


Q ss_pred             HHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCC--------CcHHHHHHHHHcCCCCCCcc
Q 025101          156 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK--------SDIPILLKRYMDKELELDKF  227 (258)
Q Consensus       156 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~  227 (258)
                      ..++.+.|..+ |.++.+|..+. ++..++...++.|++.++|++...|...        +.+.++.+++..|++..+  
T Consensus       246 a~~iar~L~~G-gtmvTYGGMSk-qPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~--  321 (354)
T KOG0025|consen  246 ATEIARYLERG-GTMVTYGGMSK-QPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAP--  321 (354)
T ss_pred             HHHHHHHHhcC-ceEEEecCccC-CCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccc--
Confidence            77889999999 99999996554 6778888888999999999998887642        246678889999977655  


Q ss_pred             cccccccccHHHHHHHHhcCCe--eEEEEeeC
Q 025101          228 VTHEMKFEEINSAFDLLIKGKC--LRCVIWMG  257 (258)
Q Consensus       228 ~~~~~~~~~~~~a~~~~~~~~~--~k~vi~~~  257 (258)
                      -.+..++++...|++..-....  .|-+|.++
T Consensus       322 ~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~e  353 (354)
T KOG0025|consen  322 NCEKVPLADHKTALDAALSKFGKSGKQIIVLE  353 (354)
T ss_pred             cceeeechhhhHHHHHHHHHhccCCceEEEec
Confidence            3356678887777775433322  25555543

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.95  E-value=2.9e-26  Score=190.33  Aligned_cols=236  Identities=17%  Similarity=0.199  Sum_probs=183.8

Q ss_pred             CccccCCCCceeeeec------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhh--cCCCCCC-EEE
Q 025101            6 TSRFKDLRGETIHHFV------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGS-TVV   76 (258)
Q Consensus         6 ~~~~~~~~G~~v~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~g~-~vl   76 (258)
                      +..|+  +||+|+.+.      ..|+|++|+.+|++.++++|+++++++++++++.+.+|+.++...  ..+.+|+ +|+
T Consensus        73 ~~~~~--~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vl  150 (323)
T TIGR02823        73 DPRFR--EGDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVL  150 (323)
T ss_pred             CCCCC--CCCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEE
Confidence            34566  999999653      358999999999999999999999999999999999998876433  3478898 999


Q ss_pred             EEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhh
Q 025101           77 IFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASL  155 (258)
Q Consensus        77 I~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~  155 (258)
                      |+|+ |++|++++++|+..|+ +++++++++++.++++++|++.+++.++   .+.  .++...++++|.++||+|+.. 
T Consensus       151 I~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~~~~~~~~d~vld~~g~~~-  223 (323)
T TIGR02823       151 VTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEVIDRED---LSP--PGKPLEKERWAGAVDTVGGHT-  223 (323)
T ss_pred             EEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEEEcccc---HHH--HHHHhcCCCceEEEECccHHH-
Confidence            9997 9999999999999999 8888888888889999999988888654   222  444554447999999999875 


Q ss_pred             HHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC---CCcHHHHHHHHHcCCCCCCccccccc
Q 025101          156 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEM  232 (258)
Q Consensus       156 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~  232 (258)
                      +...+++++++ |+++.+|.... ...+.+...++.++.++.+........   .+.+..+.+++..+.+..  . .+.|
T Consensus       224 ~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~  298 (323)
T TIGR02823       224 LANVLAQLKYG-GAVAACGLAGG-PDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLES--I-TREI  298 (323)
T ss_pred             HHHHHHHhCCC-CEEEEEcccCC-CCccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCcC--c-eeee
Confidence            89999999999 99999996532 233344445557789988865332111   112445555666775442  3 4689


Q ss_pred             ccccHHHHHHHHhcCCee-EEEEe
Q 025101          233 KFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       233 ~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      +++++++|++.+.+++.. |+++.
T Consensus       299 ~l~~~~~a~~~~~~~~~~~k~vv~  322 (323)
T TIGR02823       299 TLEELPEALEQILAGQHRGRTVVD  322 (323)
T ss_pred             cHHHHHHHHHHHhCCCccceEEEe
Confidence            999999999999988777 88875

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=5e-26  Score=189.69  Aligned_cols=240  Identities=22%  Similarity=0.354  Sum_probs=199.3

Q ss_pred             CCCCccccCCCCceeeeec---------------------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhh
Q 025101            3 RDQTSRFKDLRGETIHHFV---------------------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG   61 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---------------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~   61 (258)
                      |.++..++  +||+|+...                     ..|+|++|+.++.+.++++|+++++.+++.+++++.+||+
T Consensus        73 G~~~~~~~--~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~  150 (336)
T cd08276          73 GEGVTRFK--VGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWN  150 (336)
T ss_pred             CCCCcCCC--CCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHH
Confidence            34455677  899998653                     1578999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC
Q 025101           62 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG  141 (258)
Q Consensus        62 ~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~  141 (258)
                      ++.....+.+|++++|+|+|++|++++++++..|+ +|+++++++++.+.++++|++.+++...  ..++.+.+.+.+++
T Consensus       151 ~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~  227 (336)
T cd08276         151 ALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRT--TPDWGEEVLKLTGG  227 (336)
T ss_pred             HHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcCCc--ccCHHHHHHHHcCC
Confidence            98777889999999999889999999999999999 8999999999999999999988887654  14577788888876


Q ss_pred             -CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcC
Q 025101          142 -GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK  220 (258)
Q Consensus       142 -~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  220 (258)
                       ++|.++|+++... +..++++++++ |+++.+|..... ........++.+++++.+...+.   ...+.++++++.++
T Consensus       228 ~~~d~~i~~~~~~~-~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~  301 (336)
T cd08276         228 RGVDHVVEVGGPGT-LAQSIKAVAPG-GVISLIGFLSGF-EAPVLLLPLLTKGATLRGIAVGS---RAQFEAMNRAIEAH  301 (336)
T ss_pred             CCCcEEEECCChHH-HHHHHHhhcCC-CEEEEEccCCCC-ccCcCHHHHhhcceEEEEEecCc---HHHHHHHHHHHHcC
Confidence             8999999998665 88999999999 999999965442 22344556678899999886443   45788899999888


Q ss_pred             CCCCCcccccccccccHHHHHHHHhcCCee-EEEEe
Q 025101          221 ELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      .+..  ..++.|++++++++++.+.++... |++++
T Consensus       302 ~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  335 (336)
T cd08276         302 RIRP--VIDRVFPFEEAKEAYRYLESGSHFGKVVIR  335 (336)
T ss_pred             Cccc--ccCcEEeHHHHHHHHHHHHhCCCCceEEEe
Confidence            6553  356889999999999999887766 88875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.95  E-value=2.5e-26  Score=190.74  Aligned_cols=236  Identities=18%  Similarity=0.199  Sum_probs=180.3

Q ss_pred             ccccCCCCceeeeec------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcC--CC-CCCEEEE
Q 025101            7 SRFKDLRGETIHHFV------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN--VE-VGSTVVI   77 (258)
Q Consensus         7 ~~~~~~~G~~v~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~--~~-~g~~vlI   77 (258)
                      ..|+  +||+|+...      ..|+|++|++++++.++++|+++++++++.+++.+.+||+++.....  +. .+++|+|
T Consensus        75 ~~~~--~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI  152 (325)
T cd05280          75 PRFR--EGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLV  152 (325)
T ss_pred             CCCC--CCCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence            3466  899999642      36899999999999999999999999999999999999998755433  35 3579999


Q ss_pred             Ecc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcC-CCCCEEEEecCChhh
Q 025101           78 FGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD-GGADYCFECVGLASL  155 (258)
Q Consensus        78 ~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~-~~~d~v~d~~g~~~~  155 (258)
                      +|+ |++|++++++++..|+ +|+++++++++.++++++|++++++.++   .  ...+.+... +++|++||++|+.. 
T Consensus       153 ~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~--~~~~~~~~~~~~~d~vi~~~~~~~-  225 (325)
T cd05280         153 TGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASEVLDRED---L--LDESKKPLLKARWAGAIDTVGGDV-  225 (325)
T ss_pred             ECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEcchh---H--HHHHHHHhcCCCccEEEECCchHH-
Confidence            997 9999999999999999 7999999999999999999998887654   2  222333333 38999999999865 


Q ss_pred             HHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC---CCcHHHHHHHHHcCCCCCCccccccc
Q 025101          156 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEM  232 (258)
Q Consensus       156 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~  232 (258)
                      +...+++++++ |+++.+|...... ..++...++.+++++.+........   ...++.+.+++..+.   .+.+..+|
T Consensus       226 ~~~~~~~l~~~-g~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  300 (325)
T cd05280         226 LANLLKQTKYG-GVVASCGNAAGPE-LTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDL---LEIVVREI  300 (325)
T ss_pred             HHHHHHhhcCC-CEEEEEecCCCCc-cccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCC---ccceeeEe
Confidence            99999999999 9999999654322 2334444446788888865433211   112333444444552   22356899


Q ss_pred             ccccHHHHHHHHhcCCee-EEEEee
Q 025101          233 KFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       233 ~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +++++++|++.+.+++.. |+++++
T Consensus       301 ~~~~~~~a~~~~~~~~~~gk~vv~~  325 (325)
T cd05280         301 SLEELPEAIDRLLAGKHRGRTVVKI  325 (325)
T ss_pred             cHHHHHHHHHHHhcCCcceEEEEeC
Confidence            999999999999988777 988864

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.95  E-value=2.5e-26  Score=191.18  Aligned_cols=241  Identities=23%  Similarity=0.283  Sum_probs=191.3

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |.++..++  +||+|+++ ..|+|++|+.++.+.++++|++  +.+++.++.++.|||+++.+..++.+|++++|+|+ |
T Consensus        76 G~~v~~~~--~Gd~V~~~-~~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g  150 (329)
T cd08250          76 GEGVTDFK--VGDAVATM-SFGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAG  150 (329)
T ss_pred             CCCCCCCC--CCCEEEEe-cCcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCcc
Confidence            34455677  89999965 3589999999999999999997  45677888899999999877788999999999985 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYA  161 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~  161 (258)
                      ++|++++++++..|+ +|+++++++++.+.++++|++.+++..+   .++.+.+....++++|++||++|+.. +..+++
T Consensus       151 ~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~~~vd~v~~~~g~~~-~~~~~~  225 (329)
T cd08250         151 GTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDRPINYKT---EDLGEVLKKEYPKGVDVVYESVGGEM-FDTCVD  225 (329)
T ss_pred             HHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCceEEeCCC---ccHHHHHHHhcCCCCeEEEECCcHHH-HHHHHH
Confidence            999999999999999 8999999999999999999988888776   66777776665448999999999754 899999


Q ss_pred             hhhcCCceEEEecccCCCC---------ceeechHHHHhcCceEEecccCCCC--CCCcHHHHHHHHHcCCCCCCccccc
Q 025101          162 CCRKGWGKTIVLGVDQPGS---------QLSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTH  230 (258)
Q Consensus       162 ~l~~~~G~~v~~g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~  230 (258)
                      +++++ |+++.+|......         ...++ ...+.++.++.++......  ..+.+.++++++.++.++......+
T Consensus       226 ~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  303 (329)
T cd08250         226 NLALK-GRLIVIGFISGYQSGTGPSPVKGATLP-PKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTR  303 (329)
T ss_pred             HhccC-CeEEEEecccCCcccCccccccccccc-HHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCcc
Confidence            99999 9999998654321         01122 2346678888887533211  1345778888999997766444456


Q ss_pred             ccccccHHHHHHHHhcCCee-EEEEe
Q 025101          231 EMKFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       231 ~~~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      .++++++++|++.+..++.. |++++
T Consensus       304 ~~~~~~~~~a~~~~~~~~~~~kvvv~  329 (329)
T cd08250         304 FRGLESVADAVDYLYSGKNIGKVVVE  329 (329)
T ss_pred             ccCHHHHHHHHHHHHcCCCCceEEeC
Confidence            79999999999999887666 88763

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.95  E-value=2.3e-26  Score=191.81  Aligned_cols=217  Identities=24%  Similarity=0.379  Sum_probs=177.8

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      .|+|++|+.++...++++|+++++++++.+++++.+||+++... .++++++++|+|+ |++|++++++++..|+ +|++
T Consensus       115 ~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~  192 (334)
T PRK13771        115 DGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIA  192 (334)
T ss_pred             CceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEE
Confidence            58999999999999999999999999999999999999987555 8899999999997 8999999999999999 8999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      +++++++.+.++++ ++.+++.+     ++.+.+++. + ++|+++||+|+.. ...+++.++++ |+++.+|.......
T Consensus       193 ~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~v~~~-~-~~d~~ld~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~  262 (334)
T PRK13771        193 VTSSESKAKIVSKY-ADYVIVGS-----KFSEEVKKI-G-GADIVIETVGTPT-LEESLRSLNMG-GKIIQIGNVDPSPT  262 (334)
T ss_pred             EeCCHHHHHHHHHH-HHHhcCch-----hHHHHHHhc-C-CCcEEEEcCChHH-HHHHHHHHhcC-CEEEEEeccCCCCC
Confidence            99999999999888 76666553     245555554 3 7999999999876 88999999999 99999996543222


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ++......+.+++++.+...   ..++.++++++++.++.++  +.+++.|+++++++|++.+.++... |+++.+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  333 (334)
T PRK13771        263 YSLRLGYIILKDIEIIGHIS---ATKRDVEEALKLVAEGKIK--PVIGAEVSLSEIDKALEELKDKSRIGKILVKP  333 (334)
T ss_pred             cccCHHHHHhcccEEEEecC---CCHHHHHHHHHHHHcCCCc--ceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence            22333334567888887642   2256788999999999765  3467899999999999999887666 988865

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.95  E-value=4.5e-26  Score=189.60  Aligned_cols=234  Identities=22%  Similarity=0.285  Sum_probs=187.8

Q ss_pred             cccCCCCceeeeeccccceeeeEEEec-ceEEEcCCCCC--ccchhh-cchhhhhhhhhhhhhcCCCCCCEEEEEcc-CH
Q 025101            8 RFKDLRGETIHHFVSVSSFSEYTVLDI-AHVVKVDPTVP--PNRACL-LSCGVSTGVGAAWRTANVEVGSTVVIFGL-GS   82 (258)
Q Consensus         8 ~~~~~~G~~v~~~~~~g~~~~~~~v~~-~~~~~~p~~~~--~~~aa~-~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~   82 (258)
                      .++  +||+|+++   ++|++|+.++. +.++++|++++  +.+++. +++++.|||+++.....+.+|++|||+|+ |+
T Consensus        83 ~~~--~Gd~V~~~---~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~  157 (329)
T cd05288          83 DFK--VGDLVSGF---LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGA  157 (329)
T ss_pred             CCC--CCCEEecc---cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcch
Confidence            466  89999865   47999999999 99999999985  445555 88899999999877788899999999985 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHH
Q 025101           83 IGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYA  161 (258)
Q Consensus        83 ~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~  161 (258)
                      +|++++++++..|+ +|+++++++++.+.+++ +|++.++++++   .++.+.+.+.+++++|++|||+|... +..+++
T Consensus       158 ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~v~~~~~~~~d~vi~~~g~~~-~~~~~~  232 (329)
T cd05288         158 VGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGFDAAINYKT---PDLAEALKEAAPDGIDVYFDNVGGEI-LDAALT  232 (329)
T ss_pred             HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhcCCceEEecCC---hhHHHHHHHhccCCceEEEEcchHHH-HHHHHH
Confidence            99999999999999 89999999999999988 99999998887   67888888777558999999999865 999999


Q ss_pred             hhhcCCceEEEecccCCCCce----eechHHHHhcCceEEecccCCCCC--CCcHHHHHHHHHcCCCCCCcccccccccc
Q 025101          162 CCRKGWGKTIVLGVDQPGSQL----SLSSFEVLHSGKILMGSLFGGLKA--KSDIPILLKRYMDKELELDKFVTHEMKFE  235 (258)
Q Consensus       162 ~l~~~~G~~v~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  235 (258)
                      +++++ |+++.+|........    .++....+.++.++.+........  .+.+.++++++.++.++..+  ...++++
T Consensus       233 ~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--~~~~~l~  309 (329)
T cd05288         233 LLNKG-GRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRE--DVVEGLE  309 (329)
T ss_pred             hcCCC-ceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccc--cccccHH
Confidence            99999 999999865432211    123444567788888775433211  13467788899999777653  3558999


Q ss_pred             cHHHHHHHHhcCCee-EEEE
Q 025101          236 EINSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       236 ~~~~a~~~~~~~~~~-k~vi  254 (258)
                      ++.++++.+.+++.. |+++
T Consensus       310 ~~~~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         310 NAPEAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             HHHHHHHHHhcCCCccceeC
Confidence            999999999877665 7663

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.95  E-value=1.5e-25  Score=185.36  Aligned_cols=240  Identities=18%  Similarity=0.268  Sum_probs=195.6

Q ss_pred             CCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CH
Q 025101            4 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GS   82 (258)
Q Consensus         4 ~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~   82 (258)
                      .++..++  +||+|+++..+|+|++|+.++...++++|+++++.+++.++.++.++|+++.+...+.++++++|+|+ |+
T Consensus        74 ~~~~~~~--~Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~  151 (323)
T cd05276          74 PGVTGWK--VGDRVCALLAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASG  151 (323)
T ss_pred             CCCCCCC--CCCEEEEecCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcCh
Confidence            3445577  89999987666999999999999999999999999999999999999999877788999999999996 89


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHH
Q 025101           83 IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYA  161 (258)
Q Consensus        83 ~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~  161 (258)
                      +|++++++++..|+ +|+++++++++.+.++++|++.+++...   .++.+.+.+...+ ++|++||++|... +...++
T Consensus       152 ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~  226 (323)
T cd05276         152 VGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAINYRT---EDFAEEVKEATGGRGVDVILDMVGGDY-LARNLR  226 (323)
T ss_pred             HHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCc---hhHHHHHHHHhCCCCeEEEEECCchHH-HHHHHH
Confidence            99999999999999 8999999989999998899888888776   6777888877766 8999999999877 888999


Q ss_pred             hhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC-------CCcHHHHHHHHHcCCCCCCccccccccc
Q 025101          162 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA-------KSDIPILLKRYMDKELELDKFVTHEMKF  234 (258)
Q Consensus       162 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~  234 (258)
                      +++++ |+++.+|..... ....+...++.+++++.++.......       ...+.++++++.++.+..  ..++.|++
T Consensus       227 ~~~~~-g~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  302 (323)
T cd05276         227 ALAPD-GRLVLIGLLGGA-KAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRP--VIDKVFPL  302 (323)
T ss_pred             hhccC-CEEEEEecCCCC-CCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccC--CcceEEcH
Confidence            99999 999999865332 22344444556788888876443211       122456778888886643  46688999


Q ss_pred             ccHHHHHHHHhcCCee-EEEE
Q 025101          235 EEINSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       235 ~~~~~a~~~~~~~~~~-k~vi  254 (258)
                      +++++|++.+.++... |+++
T Consensus       303 ~~~~~a~~~~~~~~~~~kvv~  323 (323)
T cd05276         303 EEAAEAHRRMESNEHIGKIVL  323 (323)
T ss_pred             HHHHHHHHHHHhCCCcceEeC
Confidence            9999999999877655 7653

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=1.1e-25  Score=185.53  Aligned_cols=187  Identities=25%  Similarity=0.423  Sum_probs=159.6

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|++|+++++..++++|+++++++++ ++.++.+||+++.....+.+|++|||.|+|++|++++|+++..|+ +|+++
T Consensus       117 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~  194 (306)
T cd08258         117 DGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVV  194 (306)
T ss_pred             CCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEE
Confidence            4899999999999999999999999887 666888999998888889999999998889999999999999999 78776


Q ss_pred             c--CCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          103 D--VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       103 ~--~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      .  +++++.+.++++|++.+ +++.   .++.+.+.+..++ ++|+++|++|+...+...+++++++ |+++.+|.... 
T Consensus       195 ~~~~~~~~~~~~~~~g~~~~-~~~~---~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-  268 (306)
T cd08258         195 GTEKDEVRLDVAKELGADAV-NGGE---EDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFGP-  268 (306)
T ss_pred             CCCCCHHHHHHHHHhCCccc-CCCc---CCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccCC-
Confidence            3  34457788899999878 7776   7888888887776 8999999998766689999999999 99999997652 


Q ss_pred             CceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcC
Q 025101          180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK  220 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  220 (258)
                      ....++...++.+++++.|+..+.   +++++++++++++|
T Consensus       269 ~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~~~~~  306 (306)
T cd08258         269 LAASIDVERIIQKELSVIGSRSST---PASWETALRLLASG  306 (306)
T ss_pred             CCcccCHHHHhhcCcEEEEEecCc---hHhHHHHHHHHhcC
Confidence            335566677778999999998655   57899999998875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.95  E-value=2.2e-25  Score=186.02  Aligned_cols=241  Identities=16%  Similarity=0.123  Sum_probs=189.8

Q ss_pred             CCCCccccCCCCceeeeec---cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCC-----CCE
Q 025101            3 RDQTSRFKDLRGETIHHFV---SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV-----GST   74 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----g~~   74 (258)
                      |.++..|+  +||+|+.+.   ..|+|++|+.++.+.++++|++++.++++.+++.+.+||+++.+...+.+     |++
T Consensus        75 G~~v~~~~--~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~  152 (336)
T cd08252          75 GSEVTLFK--VGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKT  152 (336)
T ss_pred             CCCCCCCC--CCCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCE
Confidence            34455677  999999652   35899999999999999999999999999999999999998877778877     999


Q ss_pred             EEEEcc-CHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           75 VVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        75 vlI~G~-g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      |+|+|+ |++|++++++++..| + +|+++++++++.++++++|++.+++.++    ++.+.+....++++|++||++|.
T Consensus       153 vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~i~~~~~~~~d~vl~~~~~  227 (336)
T cd08252         153 LLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKELGADHVINHHQ----DLAEQLEALGIEPVDYIFCLTDT  227 (336)
T ss_pred             EEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHhcCCcEEEeCCc----cHHHHHHhhCCCCCCEEEEccCc
Confidence            999985 999999999999999 7 9999999999999999999988887653    45566664433389999999997


Q ss_pred             hhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC--CC-------CCcHHHHHHHHHcCCCC
Q 025101          153 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL--KA-------KSDIPILLKRYMDKELE  223 (258)
Q Consensus       153 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~g~~~  223 (258)
                      ...+..++++++++ |+++.+|...    ..++...+..++.++.+......  ..       .+.+.++++++.++.+.
T Consensus       228 ~~~~~~~~~~l~~~-g~~v~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  302 (336)
T cd08252         228 DQHWDAMAELIAPQ-GHICLIVDPQ----EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLK  302 (336)
T ss_pred             HHHHHHHHHHhcCC-CEEEEecCCC----CcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEe
Confidence            66699999999999 9999998542    22333344456777776543221  00       13467888999999776


Q ss_pred             CCcc-cccccccccHHHHHHHHhcCCee-EEEEe
Q 025101          224 LDKF-VTHEMKFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       224 ~~~~-~~~~~~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      .... ..+.++++++++|++.+.++... |++++
T Consensus       303 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  336 (336)
T cd08252         303 TTLTETLGPINAENLREAHALLESGKTIGKIVLE  336 (336)
T ss_pred             cceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence            4321 12468999999999999988766 88763

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08251 polyketide_synthase polyketide synthase

Probab=99.95  E-value=1.4e-25  Score=184.16  Aligned_cols=240  Identities=20%  Similarity=0.292  Sum_probs=189.2

Q ss_pred             CCCCccccCCCCceeeeec--cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc
Q 025101            3 RDQTSRFKDLRGETIHHFV--SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL   80 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~--~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~   80 (258)
                      |.++.+++  +||+|+++.  ..|+|++|++++++.++++|+++++++++.++.++.+||+++ +...+++|++++|+|+
T Consensus        53 G~~v~~~~--~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~~~~~~g~~vli~~~  129 (303)
T cd08251          53 GPHVTRLA--VGDEVIAGTGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGLAKGEHILIQTA  129 (303)
T ss_pred             CCCCCCCC--CCCEEEEecCCCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-HhcCCCCCCEEEEecC
Confidence            44556677  999999764  358999999999999999999999999999999999999987 5788999999999975


Q ss_pred             -CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHH
Q 025101           81 -GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQE  158 (258)
Q Consensus        81 -g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~  158 (258)
                       |++|++++|+++..|+ +|+++++++++.+.++++|++.+++...   .++...+.+.+++ ++|.++|++++.. ...
T Consensus       130 ~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~~~~~~~~-~~~  204 (303)
T cd08251         130 TGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE---EDFEEEIMRLTGGRGVDVVINTLSGEA-IQK  204 (303)
T ss_pred             CcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHcCCCCceEEEECCcHHH-HHH
Confidence             9999999999999999 8999999999999999999998998877   7788888888877 8999999997655 889


Q ss_pred             HHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC------CCCCcHHHHHHHHHcCCCCCCccccccc
Q 025101          159 AYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL------KAKSDIPILLKRYMDKELELDKFVTHEM  232 (258)
Q Consensus       159 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~  232 (258)
                      .+++++++ |+++.+|.........+.... +.++..+........      ...+.+.++++++.++.++.  ..++.|
T Consensus       205 ~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~  280 (303)
T cd08251         205 GLNCLAPG-GRYVEIAMTALKSAPSVDLSV-LSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRP--TVSRIF  280 (303)
T ss_pred             HHHHhccC-cEEEEEeccCCCccCccChhH-hhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccC--CCceEE
Confidence            99999999 999999865422222222222 222333332211110      01234677888888886553  366889


Q ss_pred             ccccHHHHHHHHhcCCee-EEEE
Q 025101          233 KFEEINSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       233 ~~~~~~~a~~~~~~~~~~-k~vi  254 (258)
                      +++++.++++.+.+++.. |+++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         281 PFDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             cHHHHHHHHHHHHhCCCcceEeC
Confidence            999999999999887666 7663

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>smart00829 PKS_ER Enoylreductase

Probab=99.95  E-value=1e-25  Score=183.45  Aligned_cols=239  Identities=18%  Similarity=0.267  Sum_probs=189.7

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |.++..|+  +||+|+++ ..|+|++|+.++.+.++++|+++++++++.+++++.++|+++.+...+.+|++|+|+|+ |
T Consensus        39 G~~~~~~~--~Gd~V~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~  115 (288)
T smart00829       39 GPGVTGLA--VGDRVMGL-APGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAG  115 (288)
T ss_pred             CCCCcCCC--CCCEEEEE-cCCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCc
Confidence            44555677  99999976 35899999999999999999999999999999999999998877888999999999985 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC--ceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQE  158 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~  158 (258)
                      ++|++++++++..|+ +|+++++++++.+.++++|+  +.++++.+   .++.+.+.+..++ ++|.++|++|+.. ...
T Consensus       116 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~  190 (288)
T smart00829      116 GVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD---LSFADEILRATGGRGVDVVLNSLAGEF-LDA  190 (288)
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC---ccHHHHHHHHhCCCCcEEEEeCCCHHH-HHH
Confidence            999999999999999 89999999999999999998  77888776   6788888887776 8999999999654 889


Q ss_pred             HHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCC-----CCCcHHHHHHHHHcCCCCCCcccccccc
Q 025101          159 AYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK-----AKSDIPILLKRYMDKELELDKFVTHEMK  233 (258)
Q Consensus       159 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~  233 (258)
                      .+++++++ |+++.+|..........+... +.++.++.+.......     ....+.++++++.++.+...  ..+.|+
T Consensus       191 ~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  266 (288)
T smart00829      191 SLRCLAPG-GRFVEIGKRDIRDNSQLGMAP-FRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPL--PVTVFP  266 (288)
T ss_pred             HHHhccCC-cEEEEEcCcCCccccccchhh-hcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCc--CceEEc
Confidence            99999999 999999864321112222222 3446665554321110     12346678888888866543  457899


Q ss_pred             cccHHHHHHHHhcCCee-EEE
Q 025101          234 FEEINSAFDLLIKGKCL-RCV  253 (258)
Q Consensus       234 ~~~~~~a~~~~~~~~~~-k~v  253 (258)
                      +++++++++.+..+... |++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~iv  287 (288)
T smart00829      267 ISDVEDAFRYMQQGKHIGKVV  287 (288)
T ss_pred             HHHHHHHHHHHhcCCCcceEe
Confidence            99999999999887655 665

Enoylreductase in Polyketide synthases.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=3.7e-25  Score=184.68  Aligned_cols=222  Identities=19%  Similarity=0.286  Sum_probs=185.6

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      .|+|++|+.++++.++++|+++++++++.++.++.+|++++.+...+.++++++|+|+ +++|++++++++..|+ +|+.
T Consensus       118 ~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~  196 (342)
T cd08266         118 DGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIA  196 (342)
T ss_pred             CcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEE
Confidence            4789999999999999999999999999999999999999878888999999999987 6999999999999999 8999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCC
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  180 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  180 (258)
                      +++++++.+.+++++.+.+++..+   .++.+.+.+.+.+ ++|.++|+.|... +...+++++++ |+++.+|..... 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~~~g~~~-~~~~~~~l~~~-G~~v~~~~~~~~-  270 (342)
T cd08266         197 TAGSEDKLERAKELGADYVIDYRK---EDFVREVRELTGKRGVDVVVEHVGAAT-WEKSLKSLARG-GRLVTCGATTGY-  270 (342)
T ss_pred             EeCCHHHHHHHHHcCCCeEEecCC---hHHHHHHHHHhCCCCCcEEEECCcHHH-HHHHHHHhhcC-CEEEEEecCCCC-
Confidence            999999999888888877787766   6777778777766 8999999999866 88999999999 999999865432 


Q ss_pred             ceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ....+....+.++.++.+.....   ...+.++++++.++.+.  +.+++.|+++++++|++.+.++... |+++++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  342 (342)
T cd08266         271 EAPIDLRHVFWRQLSILGSTMGT---KAELDEALRLVFRGKLK--PVIDSVFPLEEAAEAHRRLESREQFGKIVLTP  342 (342)
T ss_pred             CCCcCHHHHhhcceEEEEEecCC---HHHHHHHHHHHHcCCcc--cceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            22334434566788888775332   35688899999999655  3477899999999999999887666 888763

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.94  E-value=2.4e-25  Score=184.45  Aligned_cols=241  Identities=18%  Similarity=0.258  Sum_probs=196.9

Q ss_pred             CCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CH
Q 025101            4 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GS   82 (258)
Q Consensus         4 ~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~   82 (258)
                      ..+..++  +||+|+++..+|+|++|+.++...++++|+++++.+++.++.++.++|+++.+...+.+|++++|+|+ |+
T Consensus        74 ~~~~~~~--~Gd~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~  151 (325)
T TIGR02824        74 EGVSRWK--VGDRVCALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASG  151 (325)
T ss_pred             CCCCCCC--CCCEEEEccCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcch
Confidence            3445577  89999987556899999999999999999999999999999999999998878889999999999996 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHH
Q 025101           83 IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYA  161 (258)
Q Consensus        83 ~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~  161 (258)
                      +|++++++++..|+ +|+++++++++.+.++++|++.+++...   .++.+.+....++ ++|+++|++|... +...++
T Consensus       152 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~  226 (325)
T TIGR02824       152 IGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAINYRE---EDFVEVVKAETGGKGVDVILDIVGGSY-LNRNIK  226 (325)
T ss_pred             HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCc---hhHHHHHHHHcCCCCeEEEEECCchHH-HHHHHH
Confidence            99999999999999 8999999999888888899888887766   6777888877766 8999999999865 889999


Q ss_pred             hhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC-------CCcHHHHHHHHHcCCCCCCccccccccc
Q 025101          162 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA-------KSDIPILLKRYMDKELELDKFVTHEMKF  234 (258)
Q Consensus       162 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~  234 (258)
                      +++++ |+++.+|....... .++...++.+++++.+........       ...+.++++++.++.+.  +..++.|++
T Consensus       227 ~l~~~-g~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~  302 (325)
T TIGR02824       227 ALALD-GRIVQIGFQGGRKA-ELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVR--PVIDKVFPL  302 (325)
T ss_pred             hhccC-cEEEEEecCCCCcC-CCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCccc--CccccEEeH
Confidence            99999 99999986543222 444455557899998876443111       12245677888888654  346688999


Q ss_pred             ccHHHHHHHHhcCCee-EEEEe
Q 025101          235 EEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       235 ~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      +++.++++.+.++... |++++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~v~~  324 (325)
T TIGR02824       303 EDAAQAHALMESGDHIGKIVLT  324 (325)
T ss_pred             HHHHHHHHHHHhCCCcceEEEe
Confidence            9999999998877666 88875

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.94  E-value=4.1e-25  Score=183.03  Aligned_cols=242  Identities=20%  Similarity=0.289  Sum_probs=194.9

Q ss_pred             CCCCccccCCCCceeeeec-----cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEE
Q 025101            3 RDQTSRFKDLRGETIHHFV-----SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI   77 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~-----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI   77 (258)
                      |+++..|+  +||+|+++.     ..|++++|+.++.+.++++|+++++++++.+++++.+||+++....++.+|++++|
T Consensus        73 g~~~~~~~--~Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI  150 (325)
T cd08253          73 GEGVDGLK--VGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLV  150 (325)
T ss_pred             CCCCCCCC--CCCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEE
Confidence            44555677  999999764     26899999999999999999999999999999999999999877788999999999


Q ss_pred             Ecc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhh
Q 025101           78 FGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL  155 (258)
Q Consensus        78 ~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~  155 (258)
                      +|+ |++|++++++++..|+ +|+++++++++.+.++++|++.+++...   .++.+.+.+...+ ++|+++|++|... 
T Consensus       151 ~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-  225 (325)
T cd08253         151 HGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNYRA---EDLADRILAATAGQGVDVIIEVLANVN-  225 (325)
T ss_pred             EcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---cCHHHHHHHHcCCCceEEEEECCchHH-
Confidence            986 9999999999999999 8999999999999999999988888776   6788888887766 8999999999876 


Q ss_pred             HHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCC---CCCcHHHHHHHHHcCCCCCCccccccc
Q 025101          156 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK---AKSDIPILLKRYMDKELELDKFVTHEM  232 (258)
Q Consensus       156 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~  232 (258)
                      ....+++++++ |+++.+|....  ....+...++.++.++.+.......   ..+.+..+.+++..+.++.  ..+++|
T Consensus       226 ~~~~~~~l~~~-g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~  300 (325)
T cd08253         226 LAKDLDVLAPG-GRIVVYGSGGL--RGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRP--VIAREY  300 (325)
T ss_pred             HHHHHHhhCCC-CEEEEEeecCC--cCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccC--ccccEE
Confidence            88889999999 99999986542  2233334445667777665432211   0123455666777776543  366889


Q ss_pred             ccccHHHHHHHHhcCCee-EEEEee
Q 025101          233 KFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       233 ~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +++++.++++.+.++... |+++++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~kvv~~~  325 (325)
T cd08253         301 PLEEAAAAHEAVESGGAIGKVVLDP  325 (325)
T ss_pred             cHHHHHHHHHHHHcCCCcceEEEeC
Confidence            999999999999887766 888753

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.94  E-value=2.4e-25  Score=185.42  Aligned_cols=215  Identities=24%  Similarity=0.389  Sum_probs=176.0

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|++|+.+++..++++|+++++++++.+++.+.+||+++.. .++.++++|+|+|+|++|++++++++..|. +|+++
T Consensus       115 ~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~  192 (330)
T cd08245         115 QGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAI  192 (330)
T ss_pred             CCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            5899999999999999999999999999999999999998754 788999999999988899999999999999 89999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.++++++|++.+++..+   .+....    ..+++|++||+++.......++++++++ |+++.+|..... ..
T Consensus       193 ~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~i~~~~~~~~-~~  263 (330)
T cd08245         193 TRSPDKRELARKLGADEVVDSGA---ELDEQA----AAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESP-PF  263 (330)
T ss_pred             eCCHHHHHHHHHhCCcEEeccCC---cchHHh----ccCCCCEEEECCCcHHHHHHHHHhcccC-CEEEEECCCCCC-cc
Confidence            99999999999999888887665   333322    2237999999988777689999999999 999999864322 22


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEE
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi  254 (258)
                      .+....++.++.++.++..+.   ...++++++++.++.+..   ..+.|+++++++|++.+.++... |+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~  330 (330)
T cd08245         264 SPDIFPLIMKRQSIAGSTHGG---RADLQEALDFAAEGKVKP---MIETFPLDQANEAYERMEKGDVRFRFVL  330 (330)
T ss_pred             ccchHHHHhCCCEEEEeccCC---HHHHHHHHHHHHcCCCcc---eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence            223444667788888876433   356888899999997653   34789999999999999887766 7664

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.94  E-value=4.3e-25  Score=179.44  Aligned_cols=229  Identities=26%  Similarity=0.426  Sum_probs=178.7

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCH
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS   82 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~   82 (258)
                      |+++..++  .||+|+.+   +.|++|++++.+.++++|+++++++++.+ +++.+||+++ ...++.+|++++|+|+|+
T Consensus        36 G~~v~~~~--~Gd~V~~~---~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~  108 (277)
T cd08255          36 GSGVTGFK--PGDRVFCF---GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGL  108 (277)
T ss_pred             CCCCCCCC--CCCEEEec---CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCH
Confidence            44455677  89999975   36999999999999999999999999888 6899999986 578899999999999899


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-CceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHH
Q 025101           83 IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-VTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAY  160 (258)
Q Consensus        83 ~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~  160 (258)
                      +|++++++++..|.++|+++++++++.++++++| ++.+++..+           ....+ ++|++||+++....+...+
T Consensus       109 vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~d~vl~~~~~~~~~~~~~  177 (277)
T cd08255         109 VGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTA-----------DEIGGRGADVVIEASGSPSALETAL  177 (277)
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccch-----------hhhcCCCCCEEEEccCChHHHHHHH
Confidence            9999999999999933999999999999999999 555554322           11233 8999999998766689999


Q ss_pred             HhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC---------CCCCcHHHHHHHHHcCCCCCCcccccc
Q 025101          161 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL---------KAKSDIPILLKRYMDKELELDKFVTHE  231 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~  231 (258)
                      ++++++ |+++.+|..... . ......+..+..++.+......         ...+.++++++++.++.++  +.+.+.
T Consensus       178 ~~l~~~-g~~~~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~  252 (277)
T cd08255         178 RLLRDR-GRVVLVGWYGLK-P-LLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLE--ALITHR  252 (277)
T ss_pred             HHhcCC-cEEEEEeccCCC-c-cccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCcc--ccccCc
Confidence            999999 999999865432 1 1122234445667766653321         1125688999999999654  346688


Q ss_pred             cccccHHHHHHHHhcC--CeeEEEE
Q 025101          232 MKFEEINSAFDLLIKG--KCLRCVI  254 (258)
Q Consensus       232 ~~~~~~~~a~~~~~~~--~~~k~vi  254 (258)
                      |+++++++|++.+.++  ..+|+++
T Consensus       253 ~~~~~~~~a~~~~~~~~~~~~k~~~  277 (277)
T cd08255         253 VPFEDAPEAYRLLFEDPPECLKVVL  277 (277)
T ss_pred             cCHHHHHHHHHHHHcCCccceeeeC
Confidence            9999999999999877  4448764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=6.7e-25  Score=182.67  Aligned_cols=216  Identities=29%  Similarity=0.437  Sum_probs=175.1

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      .|+|++|++++...++++|+++++++++.+++++.+||+++.. ..+.+++++||+|+ |++|++++++++..|. +|++
T Consensus       115 ~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~  192 (332)
T cd08259         115 DGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIA  192 (332)
T ss_pred             CCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEE
Confidence            5899999999999999999999999999999999999999765 88899999999987 9999999999999999 8999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      +++++++.+.++++|.+.+++..     ++.+.+.+..  ++|+++|++|... ...++++++++ |+++.+|...... 
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~d~v~~~~g~~~-~~~~~~~~~~~-g~~v~~g~~~~~~-  262 (332)
T cd08259         193 VTRSPEKLKILKELGADYVIDGS-----KFSEDVKKLG--GADVVIELVGSPT-IEESLRSLNKG-GRLVLIGNVTPDP-  262 (332)
T ss_pred             EeCCHHHHHHHHHcCCcEEEecH-----HHHHHHHhcc--CCCEEEECCChHH-HHHHHHHhhcC-CEEEEEcCCCCCC-
Confidence            99999999999889987777543     2555555443  7999999999877 88999999999 9999998654321 


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEe
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      ...+......++..+.++...   ....+.++++++.++.++  +.+++.|+++++.+||+.+.+++.. |++++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (332)
T cd08259         263 APLRPGLLILKEIRIIGSISA---TKADVEEALKLVKEGKIK--PVIDRVVSLEDINEALEDLKSGKVVGRIVLK  332 (332)
T ss_pred             cCCCHHHHHhCCcEEEEecCC---CHHHHHHHHHHHHcCCCc--cceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence            112223333467777766422   245688899999999665  3467899999999999999988766 88764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.94  E-value=8.6e-25  Score=181.96  Aligned_cols=209  Identities=20%  Similarity=0.243  Sum_probs=171.1

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      +|+|++|+.++.+.++++|+++++.+++.+++++.|||+++ +.++++++++++|+|+|++|++++++++..|+ +|+++
T Consensus       120 ~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~  197 (329)
T cd08298         120 DGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAF  197 (329)
T ss_pred             CCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEE
Confidence            58999999999999999999999999999999999999997 88999999999999999999999999999999 89999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.+.++++|++.+++.++   .         .+.++|.++++.+....++.++++++++ |+++.+|.... ...
T Consensus       198 ~~~~~~~~~~~~~g~~~~~~~~~---~---------~~~~vD~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~  263 (329)
T cd08298         198 TRSGEHQELARELGADWAGDSDD---L---------PPEPLDAAIIFAPVGALVPAALRAVKKG-GRVVLAGIHMS-DIP  263 (329)
T ss_pred             cCChHHHHHHHHhCCcEEeccCc---c---------CCCcccEEEEcCCcHHHHHHHHHHhhcC-CEEEEEcCCCC-CCC
Confidence            99999999999999988877654   1         1227999999877666799999999999 99998885322 111


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEE
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi  254 (258)
                      .++... +.++..+.++...   ....+.++++++.++.++.  . ++.|+++++++|++.+++++.. |+++
T Consensus       264 ~~~~~~-~~~~~~i~~~~~~---~~~~~~~~~~l~~~~~l~~--~-~~~~~~~~~~~a~~~~~~~~~~~~~v~  329 (329)
T cd08298         264 AFDYEL-LWGEKTIRSVANL---TRQDGEEFLKLAAEIPIKP--E-VETYPLEEANEALQDLKEGRIRGAAVL  329 (329)
T ss_pred             ccchhh-hhCceEEEEecCC---CHHHHHHHHHHHHcCCCCc--e-EEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence            222222 3456667666422   1356888999999997654  2 4889999999999999987766 7663

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=9.8e-25  Score=181.00  Aligned_cols=237  Identities=19%  Similarity=0.244  Sum_probs=191.3

Q ss_pred             CCCCccccCCCCceeeeec-----cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEE
Q 025101            3 RDQTSRFKDLRGETIHHFV-----SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI   77 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~-----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI   77 (258)
                      |.++..|+  .||+|+++.     ..|+|++|+.++.+.++++|+++++.+++.++..+.+||+++.+..++.+|++++|
T Consensus        73 G~~~~~~~--~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli  150 (326)
T cd08272          73 GEGVTRFR--VGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLI  150 (326)
T ss_pred             CCCCCCCC--CCCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            34555677  999999764     25899999999999999999999999999999999999998878889999999999


Q ss_pred             Ecc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhh
Q 025101           78 FGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL  155 (258)
Q Consensus        78 ~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~  155 (258)
                      +|+ |++|++++++++..|+ +|++++++ ++.++++++|++.+++...   . +.+.+.+.+++ ++|.++|++++.. 
T Consensus       151 ~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~-~~~~~~~~~~~~~~d~v~~~~~~~~-  223 (326)
T cd08272         151 HGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIYYRE---T-VVEYVAEHTGGRGFDVVFDTVGGET-  223 (326)
T ss_pred             EcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEecch---h-HHHHHHHhcCCCCCcEEEECCChHH-
Confidence            985 9999999999999999 89998888 8889999999988888766   5 77888888877 8999999999865 


Q ss_pred             HHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCC--C------CCCCcHHHHHHHHHcCCCCCCcc
Q 025101          156 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG--L------KAKSDIPILLKRYMDKELELDKF  227 (258)
Q Consensus       156 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~g~~~~~~~  227 (258)
                      ....+++++++ |+++.+|...   ..  +......+++++.+.....  .      .....+.++++++.++.+..  .
T Consensus       224 ~~~~~~~l~~~-g~~v~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~  295 (326)
T cd08272         224 LDASFEAVALY-GRVVSILGGA---TH--DLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRP--L  295 (326)
T ss_pred             HHHHHHHhccC-CEEEEEecCC---cc--chhhHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCccc--c
Confidence            88899999999 9999998552   11  1222235677777664221  1      01235677888888886543  3


Q ss_pred             cc-cccccccHHHHHHHHhcCCee-EEEEee
Q 025101          228 VT-HEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       228 ~~-~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ++ +.|++++++++++.+.++... |+++++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  326 (326)
T cd08272         296 LDPRTFPLEEAAAAHARLESGSARGKIVIDV  326 (326)
T ss_pred             cccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence            44 889999999999999877666 888763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.94  E-value=1.4e-24  Score=180.24  Aligned_cols=237  Identities=16%  Similarity=0.201  Sum_probs=183.1

Q ss_pred             CccccCCCCceeeeec------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhh--hhcCCC-CCCEEE
Q 025101            6 TSRFKDLRGETIHHFV------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW--RTANVE-VGSTVV   76 (258)
Q Consensus         6 ~~~~~~~~G~~v~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~-~g~~vl   76 (258)
                      +..++  +||+|+.+.      ..|+|++|++++.+.++++|+++++++++.++.++++|+.++.  +..... +|++++
T Consensus        74 ~~~~~--~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vl  151 (324)
T cd08288          74 SPRFK--PGDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVL  151 (324)
T ss_pred             CCCCC--CCCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEE
Confidence            34566  899999652      2689999999999999999999999999999999999987653  123444 578999


Q ss_pred             EEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhh
Q 025101           77 IFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASL  155 (258)
Q Consensus        77 I~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~  155 (258)
                      |+|+ |++|++++|+|+.+|+ +|++++.++++.+.++++|++.++++++     ....++.+.++++|.+||+++... 
T Consensus       152 I~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~~~-  224 (324)
T cd08288         152 VTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASEIIDRAE-----LSEPGRPLQKERWAGAVDTVGGHT-  224 (324)
T ss_pred             EECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCEEEEcch-----hhHhhhhhccCcccEEEECCcHHH-
Confidence            9997 9999999999999999 8999999999999999999999998765     222455555557899999999754 


Q ss_pred             HHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCC---CCCcHHHHHHHHHcCCCCCCccccccc
Q 025101          156 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK---AKSDIPILLKRYMDKELELDKFVTHEM  232 (258)
Q Consensus       156 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~  232 (258)
                      +...+..++.+ |+++.+|.... ...+++...++.++.++.+.......   ..+.+..+.+++.++.+..   +.+.+
T Consensus       225 ~~~~~~~~~~~-g~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~  299 (324)
T cd08288         225 LANVLAQTRYG-GAVAACGLAGG-ADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEA---LTREI  299 (324)
T ss_pred             HHHHHHHhcCC-CEEEEEEecCC-CCCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCccc---cceee
Confidence            77888889998 99999997532 22233334444678998886432211   1224556667777775542   35899


Q ss_pred             ccccHHHHHHHHhcCCee-EEEEee
Q 025101          233 KFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       233 ~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +++++.+|++.+.+++.. |+++++
T Consensus       300 ~~~~~~~a~~~~~~~~~~~~vvv~~  324 (324)
T cd08288         300 PLADVPDAAEAILAGQVRGRVVVDV  324 (324)
T ss_pred             cHHHHHHHHHHHhcCCccCeEEEeC
Confidence            999999999999988877 888763

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=1.7e-24  Score=179.63  Aligned_cols=242  Identities=21%  Similarity=0.297  Sum_probs=193.6

Q ss_pred             CCCCccccCCCCceeeeec-----cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEE
Q 025101            3 RDQTSRFKDLRGETIHHFV-----SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI   77 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~-----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI   77 (258)
                      |+++.+|+  +||+|+++.     ..|++++|+.++.+.++++|+++++++++.+++++.+||+++.....+.++++++|
T Consensus        73 G~~~~~~~--~Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli  150 (328)
T cd08268          73 GAGVTGFA--VGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLI  150 (328)
T ss_pred             CCCCCcCC--CCCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEE
Confidence            45566777  999999763     24899999999999999999999999999999999999999877888999999999


Q ss_pred             Ecc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhh
Q 025101           78 FGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL  155 (258)
Q Consensus        78 ~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~  155 (258)
                      +|+ |++|++++++++..|+ +++.+++++++.+.++++|++.+++.+.   .++.+.+.+...+ ++|+++++.|+.. 
T Consensus       151 ~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-  225 (328)
T cd08268         151 TAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIVTDE---EDLVAEVLRITGGKGVDVVFDPVGGPQ-  225 (328)
T ss_pred             ecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEecCC---ccHHHHHHHHhCCCCceEEEECCchHh-
Confidence            987 9999999999999999 8999999999999998899888888776   6777778777766 8999999999865 


Q ss_pred             HHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCC-CCC----cHHHHHHHHHcCCCCCCccccc
Q 025101          156 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK-AKS----DIPILLKRYMDKELELDKFVTH  230 (258)
Q Consensus       156 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~g~~~~~~~~~~  230 (258)
                      ...++++++++ |+++.+|.... ....++....+.++.++.+....... ...    .+..+.+++.++.+..  ..+.
T Consensus       226 ~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  301 (328)
T cd08268         226 FAKLADALAPG-GTLVVYGALSG-EPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALKP--VVDR  301 (328)
T ss_pred             HHHHHHhhccC-CEEEEEEeCCC-CCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcC--Cccc
Confidence            88999999999 99999986543 22233333346778888776533211 011    2344555566675543  3568


Q ss_pred             ccccccHHHHHHHHhcCCee-EEEEe
Q 025101          231 EMKFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       231 ~~~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      .|++++++++++.+..+... |++++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~vv~~  327 (328)
T cd08268         302 VFPFDDIVEAHRYLESGQQIGKIVVT  327 (328)
T ss_pred             EEcHHHHHHHHHHHHcCCCCceEEEe
Confidence            89999999999999887666 88875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=1e-24  Score=181.17  Aligned_cols=207  Identities=25%  Similarity=0.343  Sum_probs=167.6

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRII  100 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~  100 (258)
                      ..|+|++|+.+++..++++|+++++++++.+++++.+||+++. ..++++|++++|+|+ |++|++++++|+..|+ +|+
T Consensus       114 ~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~  191 (325)
T cd08264         114 SNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVI  191 (325)
T ss_pred             CCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEE
Confidence            3589999999999999999999999999999999999999874 488999999999997 9999999999999999 788


Q ss_pred             EEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCC
Q 025101          101 GVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  180 (258)
Q Consensus       101 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  180 (258)
                      ++++    .+.++++|++++++.++     ..+.+++++ +++|+|+|++|... +...+++++++ |+++.+|... ..
T Consensus       192 ~~~~----~~~~~~~g~~~~~~~~~-----~~~~l~~~~-~~~d~vl~~~g~~~-~~~~~~~l~~~-g~~v~~g~~~-~~  258 (325)
T cd08264         192 AVSR----KDWLKEFGADEVVDYDE-----VEEKVKEIT-KMADVVINSLGSSF-WDLSLSVLGRG-GRLVTFGTLT-GG  258 (325)
T ss_pred             EEeH----HHHHHHhCCCeeecchH-----HHHHHHHHh-CCCCEEEECCCHHH-HHHHHHhhccC-CEEEEEecCC-CC
Confidence            8763    36778899988887654     345566666 57999999999864 99999999999 9999998642 22


Q ss_pred             ceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee
Q 025101          181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  250 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  250 (258)
                      ...++...+..++.++.+...+.   ++.++++++++...  +.  .+.+.|+++++++|++.+..+...
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~--~~--~~~~~~~~~~~~~a~~~~~~~~~~  321 (325)
T cd08264         259 EVKLDLSDLYSKQISIIGSTGGT---RKELLELVKIAKDL--KV--KVWKTFKLEEAKEALKELFSKERD  321 (325)
T ss_pred             CCccCHHHHhhcCcEEEEccCCC---HHHHHHHHHHHHcC--Cc--eeEEEEcHHHHHHHHHHHHcCCCc
Confidence            34455556666788888775332   45788899888543  32  355889999999999998876554

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.94  E-value=1.6e-24  Score=176.70  Aligned_cols=240  Identities=20%  Similarity=0.235  Sum_probs=190.2

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |.++.+++  +||+|+++. .|+|+||+.++.+.++++|+++++.+++.+++++.+||.++.+...+++|++++|+|+ |
T Consensus        43 g~~~~~~~--~Gd~V~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g  119 (293)
T cd05195          43 GSGVTGLK--VGDRVMGLA-PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAG  119 (293)
T ss_pred             cCCccCCC--CCCEEEEEe-cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCC
Confidence            34555677  999999753 5899999999999999999999999999999999999999877788999999999975 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC--CceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQE  158 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g--~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~  158 (258)
                      ++|++++++++..|+ +|+++++++++.+.+++.|  ++.+++..+   .++.+.+.+.+.+ ++|.++|++|+.. ++.
T Consensus       120 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~  194 (293)
T cd05195         120 GVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD---LSFADGILRATGGRGVDVVLNSLSGEL-LRA  194 (293)
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc---hhHHHHHHHHhCCCCceEEEeCCCchH-HHH
Confidence            999999999999999 8999998989999998888  677888776   6788888888776 8999999999884 999


Q ss_pred             HHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCC------CCCcHHHHHHHHHcCCCCCCccccccc
Q 025101          159 AYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK------AKSDIPILLKRYMDKELELDKFVTHEM  232 (258)
Q Consensus       159 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~  232 (258)
                      ++++++++ |+++.+|.........+... .+.++.++.........      ..+.+.++++++.++.++  +..+..+
T Consensus       195 ~~~~l~~~-g~~v~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  270 (293)
T cd05195         195 SWRCLAPF-GRFVEIGKRDILSNSKLGMR-PFLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLK--PLPPTVV  270 (293)
T ss_pred             HHHhcccC-ceEEEeeccccccCCccchh-hhccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcc--cCCCeee
Confidence            99999999 99999986543211112222 23345555543321110      023467788888888654  4566789


Q ss_pred             ccccHHHHHHHHhcCCee-EEEE
Q 025101          233 KFEEINSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       233 ~~~~~~~a~~~~~~~~~~-k~vi  254 (258)
                      +++++.++++.+..+... |+++
T Consensus       271 ~~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         271 PSASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             chhhHHHHHHHHhcCCCCceecC
Confidence            999999999999887665 7653

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.93  E-value=4e-24  Score=176.93  Aligned_cols=239  Identities=21%  Similarity=0.365  Sum_probs=194.4

Q ss_pred             CCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHH
Q 025101            5 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSI   83 (258)
Q Consensus         5 ~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~   83 (258)
                      ++..++  .||+|+++...|++++|+.++.+.++++|+++++.+++.++.++.+|++++.....+.+|++++|+|+ |++
T Consensus        75 ~~~~~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~  152 (323)
T cd08241          75 GVTGFK--VGDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGV  152 (323)
T ss_pred             CCCCCC--CCCEEEEecCCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchH
Confidence            344566  89999987546899999999999999999999999998888899999998776788999999999997 999


Q ss_pred             HHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHh
Q 025101           84 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYAC  162 (258)
Q Consensus        84 G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~  162 (258)
                      |++++++++..|+ +|+++++++++.+.++++|++.+++...   .++.+.+.+.+++ ++|.++|++|... +..++++
T Consensus       153 g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~~~~g~~~-~~~~~~~  227 (323)
T cd08241         153 GLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDYRD---PDLRERVKALTGGRGVDVVYDPVGGDV-FEASLRS  227 (323)
T ss_pred             HHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeeecCC---ccHHHHHHHHcCCCCcEEEEECccHHH-HHHHHHh
Confidence            9999999999999 8999999999999999999888888776   6788888888776 8999999999855 8899999


Q ss_pred             hhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC------CCcHHHHHHHHHcCCCCCCccccccccccc
Q 025101          163 CRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA------KSDIPILLKRYMDKELELDKFVTHEMKFEE  236 (258)
Q Consensus       163 l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  236 (258)
                      ++++ |+++.+|....... .+.....+.++.++.+........      ...+.++++++.++.+.  +..++.|++++
T Consensus       228 ~~~~-g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  303 (323)
T cd08241         228 LAWG-GRLLVIGFASGEIP-QIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIR--PHVSAVFPLEQ  303 (323)
T ss_pred             hccC-CEEEEEccCCCCcC-cCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcc--cccceEEcHHH
Confidence            9999 99999986432111 122333456788888875443211      13467788888888654  34678899999


Q ss_pred             HHHHHHHHhcCCee-EEEE
Q 025101          237 INSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       237 ~~~a~~~~~~~~~~-k~vi  254 (258)
                      +.++++.+..+... |+++
T Consensus       304 ~~~~~~~~~~~~~~~~vvv  322 (323)
T cd08241         304 AAEALRALADRKATGKVVL  322 (323)
T ss_pred             HHHHHHHHHhCCCCCcEEe
Confidence            99999998877655 7775

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.93  E-value=3.3e-24  Score=180.09  Aligned_cols=244  Identities=16%  Similarity=0.202  Sum_probs=177.0

Q ss_pred             CCCCc-cccCCCCceeeeec-----cccceeeeEEEecc----eEEEcCCCCCccchhhcchhhhhhhhhhhhhc-CCCC
Q 025101            3 RDQTS-RFKDLRGETIHHFV-----SVSSFSEYTVLDIA----HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA-NVEV   71 (258)
Q Consensus         3 ~~~~~-~~~~~~G~~v~~~~-----~~g~~~~~~~v~~~----~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~-~~~~   71 (258)
                      |.++. +|+  +||+|+++.     +.|+|++|+++++.    .++++|+++++++++.++.++.|||+++.... .+++
T Consensus        74 G~~v~~~~~--~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~  151 (352)
T cd08247          74 GSNVASEWK--VGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGP  151 (352)
T ss_pred             CcccccCCC--CCCEEEEeecCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCC
Confidence            44555 677  999999764     25899999999987    78999999999999999999999999986666 7999


Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc---HHHHHHHh-cCC-CCC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS---VSQIIIDM-TDG-GAD  144 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~---~~~~i~~~-~~~-~~d  144 (258)
                      |++++|+|+ |++|++++++|+.+|. ++++++. ++++.+.++++|++.+++.++   .+   +...+.+. +++ ++|
T Consensus       152 g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~d  227 (352)
T cd08247         152 DSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDA---HSGVKLLKPVLENVKGQGKFD  227 (352)
T ss_pred             CCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCC---CcccchHHHHHHhhcCCCCce
Confidence            999999987 7999999999998754 3566665 556666888899988998776   34   44444444 424 899


Q ss_pred             EEEEecCChhhHHHHHHhhh---cCCceEEEecccCCCCceee---c-------hHHHHhcCceEEecccC---CCCCCC
Q 025101          145 YCFECVGLASLVQEAYACCR---KGWGKTIVLGVDQPGSQLSL---S-------SFEVLHSGKILMGSLFG---GLKAKS  208 (258)
Q Consensus       145 ~v~d~~g~~~~~~~~~~~l~---~~~G~~v~~g~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~---~~~~~~  208 (258)
                      ++|||+|....+..++++++   ++ |+++.++.... ..+..   +       ....+.+..++......   .....+
T Consensus       228 ~vl~~~g~~~~~~~~~~~l~~~~~~-G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (352)
T cd08247         228 LILDCVGGYDLFPHINSILKPKSKN-GHYVTIVGDYK-ANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNAD  305 (352)
T ss_pred             EEEECCCCHHHHHHHHHHhCccCCC-CEEEEEeCCCc-ccccchhhhhccccchhhhhhhhhhcCCCcceEEEEecCCHH
Confidence            99999998665889999999   99 99998752211 11100   0       00011112211111100   000024


Q ss_pred             cHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          209 DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       209 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      .+.++++++.++.++  +.++++++++++++|++.+++++.. |+++++
T Consensus       306 ~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~  352 (352)
T cd08247         306 WIEKCAELIADGKVK--PPIDSVYPFEDYKEAFERLKSNRAKGKVVIKV  352 (352)
T ss_pred             HHHHHHHHHhCCCeE--eeeccEecHHHHHHHHHHHHcCCCCCcEEEeC
Confidence            577888999999654  3466899999999999999887766 888753

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=1.9e-24  Score=179.99  Aligned_cols=238  Identities=25%  Similarity=0.320  Sum_probs=180.8

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |.++.+|+  +||+|+++...|+|++|+.++.+.++++|+++++++++.+++++.+||+++.+...+.+|++++|+|+ |
T Consensus        73 G~~v~~~~--~Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g  150 (331)
T cd08273          73 GSGVTGFE--VGDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASG  150 (331)
T ss_pred             CCCCccCC--CCCEEEEeCCCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCc
Confidence            44566777  99999987556899999999999999999999999999999999999999877788999999999996 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYA  161 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~  161 (258)
                      ++|++++++++..|+ +|++++. +++.+.++++|+.. ++...   .++...  +..++++|.++|++|+.. +..+++
T Consensus       151 ~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~~~---~~~~~~--~~~~~~~d~vl~~~~~~~-~~~~~~  221 (331)
T cd08273         151 GVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDYRT---KDWLPA--MLTPGGVDVVFDGVGGES-YEESYA  221 (331)
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcCCC---cchhhh--hccCCCceEEEECCchHH-HHHHHH
Confidence            999999999999999 8999887 88889999999753 45544   344433  233348999999999887 899999


Q ss_pred             hhhcCCceEEEecccCCCCce--eechH------------HHHhcCceEEecccCC----CCCCCcHHHHHHHHHcCCCC
Q 025101          162 CCRKGWGKTIVLGVDQPGSQL--SLSSF------------EVLHSGKILMGSLFGG----LKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       162 ~l~~~~G~~v~~g~~~~~~~~--~~~~~------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~  223 (258)
                      +++++ |+++.+|........  .+++.            ....+..++.......    ....+.+.++++++.++.++
T Consensus       222 ~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~  300 (331)
T cd08273         222 ALAPG-GTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIR  300 (331)
T ss_pred             HhcCC-CEEEEEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCcc
Confidence            99999 999999865432221  11110            0112223332222100    00124577888999999665


Q ss_pred             CCcccccccccccHHHHHHHHhcCCee-EEEE
Q 025101          224 LDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       224 ~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi  254 (258)
                        +.+.++++++++++|++.+.++... |+|+
T Consensus       301 --~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         301 --PKIAKRLPLSEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             --CCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence              3466889999999999998877666 7764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=3.1e-24  Score=178.04  Aligned_cols=238  Identities=21%  Similarity=0.303  Sum_probs=185.9

Q ss_pred             CCCCccccCCCCceeeeec---cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEc
Q 025101            3 RDQTSRFKDLRGETIHHFV---SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG   79 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G   79 (258)
                      |+++.+++  +||+|+++.   ..|+|++|+.++.+.++++|+++++.+++.+++++.+|++++.+...+.+|++++|+|
T Consensus        72 G~~~~~~~--~Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g  149 (325)
T cd08271          72 GAKVTGWK--VGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITG  149 (325)
T ss_pred             CCCCCcCC--CCCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEC
Confidence            34455677  999999764   3689999999999999999999999999999999999999987788899999999999


Q ss_pred             c-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHH
Q 025101           80 L-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQ  157 (258)
Q Consensus        80 ~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~  157 (258)
                      + |++|++++++++..|+ +|+++. ++++.+.++++|++.+++...   .++...+.+..++ ++|.++|++++.. ..
T Consensus       150 ~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~  223 (325)
T cd08271         150 GAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDYND---EDVCERIKEITGGRGVDAVLDTVGGET-AA  223 (325)
T ss_pred             CccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecCCC---ccHHHHHHHHcCCCCCcEEEECCCcHh-HH
Confidence            7 7999999999999999 788876 677888888899988888776   6777888887776 8999999999876 67


Q ss_pred             HHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEeccc-----CCC-----CCCCcHHHHHHHHHcCCCCCCcc
Q 025101          158 EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF-----GGL-----KAKSDIPILLKRYMDKELELDKF  227 (258)
Q Consensus       158 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~g~~~~~~~  227 (258)
                      ..+++++++ |+++.++..... . .  . ..+.++..+.....     ...     ..++.+.++++++.++.++.  .
T Consensus       224 ~~~~~l~~~-G~~v~~~~~~~~-~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~  295 (325)
T cd08271         224 ALAPTLAFN-GHLVCIQGRPDA-S-P--D-PPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEP--L  295 (325)
T ss_pred             HHHHhhccC-CEEEEEcCCCCC-c-c--h-hHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeee--c
Confidence            789999999 999988744221 1 1  1 11222333332211     110     11234567888888886653  3


Q ss_pred             cccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          228 VTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       228 ~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      .++.|+++++.+|++.+.++... |+++++
T Consensus       296 ~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~  325 (325)
T cd08271         296 VIEVLPFEQLPEALRALKDRHTRGKIVVTI  325 (325)
T ss_pred             cceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence            55889999999999999887666 888763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.93  E-value=3.7e-24  Score=179.64  Aligned_cols=238  Identities=20%  Similarity=0.258  Sum_probs=179.3

Q ss_pred             CCCCccccCCCCceeeeec---cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCC----CCEE
Q 025101            3 RDQTSRFKDLRGETIHHFV---SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV----GSTV   75 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~----g~~v   75 (258)
                      |.++..++  +||+|+++.   ..|+|++|+.++++.++++|+++++++++.+++++.|||+++.....+.+    |+++
T Consensus        89 G~~v~~~~--~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~v  166 (350)
T cd08248          89 GSGVKSFE--IGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRV  166 (350)
T ss_pred             CCCcccCC--CCCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEE
Confidence            34555677  899999754   36899999999999999999999999999999999999999877777654    9999


Q ss_pred             EEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChh
Q 025101           76 VIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS  154 (258)
Q Consensus        76 lI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~  154 (258)
                      +|+|+ |++|++++++++..|+ +|+++.++ ++.+.++++|++.+++..+   .++.+.+...  +++|++||++|...
T Consensus       167 lI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~~~l~~~--~~vd~vi~~~g~~~  239 (350)
T cd08248         167 LILGGSGGVGTFAIQLLKAWGA-HVTTTCST-DAIPLVKSLGADDVIDYNN---EDFEEELTER--GKFDVILDTVGGDT  239 (350)
T ss_pred             EEECCCChHHHHHHHHHHHCCC-eEEEEeCc-chHHHHHHhCCceEEECCC---hhHHHHHHhc--CCCCEEEECCChHH
Confidence            99985 9999999999999999 78887754 6778889999988888766   5565555432  37999999999884


Q ss_pred             hHHHHHHhhhcCCceEEEecccCCCCc--eee--c----hHHHHhcC-------ceEEecccCCCCCCCcHHHHHHHHHc
Q 025101          155 LVQEAYACCRKGWGKTIVLGVDQPGSQ--LSL--S----SFEVLHSG-------KILMGSLFGGLKAKSDIPILLKRYMD  219 (258)
Q Consensus       155 ~~~~~~~~l~~~~G~~v~~g~~~~~~~--~~~--~----~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (258)
                       +..++++++++ |+++.+|.......  ...  .    ...+....       ..+....  .......+.++++++.+
T Consensus       240 -~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  315 (350)
T cd08248         240 -EKWALKLLKKG-GTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGF--FSPSGSALDELAKLVED  315 (350)
T ss_pred             -HHHHHHHhccC-CEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEE--ECCCHHHHHHHHHHHhC
Confidence             99999999999 99999985432111  111  0    00111111       1010000  01123568889999999


Q ss_pred             CCCCCCcccccccccccHHHHHHHHhcCCee-EEEEe
Q 025101          220 KELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       220 g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~  255 (258)
                      +.+..  .+++.|+++++.+|++.+.+++.. |++++
T Consensus       316 g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  350 (350)
T cd08248         316 GKIKP--VIDKVFPFEEVPEAYEKVESGHARGKTVIK  350 (350)
T ss_pred             CCEec--ccceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence            96643  467899999999999999887665 77763

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=7.7e-24  Score=171.15  Aligned_cols=202  Identities=27%  Similarity=0.403  Sum_probs=165.5

Q ss_pred             CCCCccccCCCCceeeeec-----------------------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhh
Q 025101            3 RDQTSRFKDLRGETIHHFV-----------------------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG   59 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~-----------------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta   59 (258)
                      |.++..|+  +||+|+++.                       ..|+|++|+.++.+.++++|+++++++++.++.++.+|
T Consensus        45 G~~v~~~~--~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a  122 (271)
T cd05188          45 GPGVTGVK--VGDRVVVLPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATA  122 (271)
T ss_pred             CCCCCcCC--CCCEEEEcCCCCCCCCHHHHhhCCCCCEeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHH
Confidence            34456677  999999654                       25899999999999999999999999999999999999


Q ss_pred             hhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhc
Q 025101           60 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        60 ~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      |+++.....+.+|++|||+|+|++|++++++++..|. +|+++++++++.+.++++|++.+++..+   .+..+.+. ..
T Consensus       123 ~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~-~~  197 (271)
T cd05188         123 YHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE---EDLEEELR-LT  197 (271)
T ss_pred             HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc---CCHHHHHH-Hh
Confidence            9998777777899999999986699999999999998 9999999999999999999888888776   66666666 44


Q ss_pred             CC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHH
Q 025101          140 DG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKR  216 (258)
Q Consensus       140 ~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (258)
                      .+ ++|++||+++.......++++++++ |+++.+|........ ......+.+++++.++..+.   ..++++++++
T Consensus       198 ~~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  270 (271)
T cd05188         198 GGGGADVVIDAVGGPETLAQALRLLRPG-GRIVVVGGTSGGPPL-DDLRRLLFKELTIIGSTGGT---REDFEEALDL  270 (271)
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEEccCCCCCCc-ccHHHHHhcceEEEEeecCC---HHHHHHHHhh
Confidence            44 8999999999845589999999999 999999866543222 22445677899999987544   3456666654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=2.3e-23  Score=173.73  Aligned_cols=243  Identities=18%  Similarity=0.310  Sum_probs=189.8

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |.++.+++  +||+|+++...|+|++|+.++.+.++++|+++++++++.+++++.+||+++.+...+.+|++|+|+|+ |
T Consensus        72 g~~~~~~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g  149 (337)
T cd08275          72 GEGVKDFK--VGDRVMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAG  149 (337)
T ss_pred             CCCCcCCC--CCCEEEEecCCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcc
Confidence            34555677  89999987666899999999999999999999999999999999999999878888999999999997 9


Q ss_pred             HHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHH
Q 025101           82 SIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAY  160 (258)
Q Consensus        82 ~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~  160 (258)
                      ++|++++++++.. +. .++.. ..+++.++++++|++.+++...   .++...++..+++++|+++|++|+.. ...++
T Consensus       150 ~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~d~v~~~~g~~~-~~~~~  223 (337)
T cd08275         150 GVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVTHVIDYRT---QDYVEEVKKISPEGVDIVLDALGGED-TRKSY  223 (337)
T ss_pred             hHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCcEEeeCCC---CcHHHHHHHHhCCCceEEEECCcHHH-HHHHH
Confidence            9999999999988 43 33222 2345778888899988888877   67888888777558999999999865 88999


Q ss_pred             HhhhcCCceEEEecccCCCC--ce-------------eechHHHHhcCceEEecccCCCCCC-----CcHHHHHHHHHcC
Q 025101          161 ACCRKGWGKTIVLGVDQPGS--QL-------------SLSSFEVLHSGKILMGSLFGGLKAK-----SDIPILLKRYMDK  220 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g  220 (258)
                      ++++++ |+++.+|......  ..             .......+.++.++.++........     ..+.++++++.++
T Consensus       224 ~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (337)
T cd08275         224 DLLKPM-GRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEG  302 (337)
T ss_pred             HhhccC-cEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCC
Confidence            999999 9999998553211  11             1122345677888888754321111     2356788888888


Q ss_pred             CCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          221 ELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      .+..  ..++.|++++++++++.+.++... |+++++
T Consensus       303 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  337 (337)
T cd08275         303 KIKP--KIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP  337 (337)
T ss_pred             CCCC--ceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            6553  356889999999999999887666 888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=1e-23  Score=174.46  Aligned_cols=235  Identities=22%  Similarity=0.264  Sum_probs=176.8

Q ss_pred             CCCCccccCCCCceeeeecc---ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEc
Q 025101            3 RDQTSRFKDLRGETIHHFVS---VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG   79 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G   79 (258)
                      |+++..++  +||+|+.+..   .|+|++|+.++.+.++++|+++++++++.+++++.+||+++.....+.+|++++|+|
T Consensus        74 G~~v~~~~--~Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g  151 (319)
T cd08267          74 GSGVTRFK--VGDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLING  151 (319)
T ss_pred             CCCCCCCC--CCCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEc
Confidence            44566777  8999997642   589999999999999999999999999999999999999987777799999999999


Q ss_pred             c-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCCh-hhH
Q 025101           80 L-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA-SLV  156 (258)
Q Consensus        80 ~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~-~~~  156 (258)
                      + |++|++++++++..|+ +|++++++ ++.+.++++|++++++...   .++.   ...+.+ ++|+++||+|+. ...
T Consensus       152 ~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~---~~~~~~~~~d~vi~~~~~~~~~~  223 (319)
T cd08267         152 ASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT---EDFV---ALTAGGEKYDVIFDAVGNSPFSL  223 (319)
T ss_pred             CCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC---CCcc---hhccCCCCCcEEEECCCchHHHH
Confidence            7 9999999999999999 89988865 8888889999988888765   3333   334444 899999999853 224


Q ss_pred             HHHHHhhhcCCceEEEecccCCCCceee---chHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccc
Q 025101          157 QEAYACCRKGWGKTIVLGVDQPGSQLSL---SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK  233 (258)
Q Consensus       157 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  233 (258)
                      ...+..++++ |+++.+|..........   ....... ...+.......  ..+.+.++++++.++.++  +++++.|+
T Consensus       224 ~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~--~~~~~~~~  297 (319)
T cd08267         224 YRASLALKPG-GRYVSVGGGPSGLLLVLLLLPLTLGGG-GRRLKFFLAKP--NAEDLEQLAELVEEGKLK--PVIDSVYP  297 (319)
T ss_pred             HHhhhccCCC-CEEEEeccccccccccccccchhhccc-cceEEEEEecC--CHHHHHHHHHHHHCCCee--eeeeeEEc
Confidence            4444459999 99999986543222111   1111111 12222221111  145788899999998654  34678999


Q ss_pred             cccHHHHHHHHhcCCee-EEE
Q 025101          234 FEEINSAFDLLIKGKCL-RCV  253 (258)
Q Consensus       234 ~~~~~~a~~~~~~~~~~-k~v  253 (258)
                      ++++++|++.+.++... |++
T Consensus       298 ~~~i~~a~~~~~~~~~~~~vv  318 (319)
T cd08267         298 LEDAPEAYRRLKSGRARGKVV  318 (319)
T ss_pred             HHHHHHHHHHHhcCCCCCcEe
Confidence            99999999999877655 665

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.92  E-value=2.5e-23  Score=171.26  Aligned_cols=227  Identities=18%  Similarity=0.268  Sum_probs=180.7

Q ss_pred             CCCccccCCCCceeeeec---cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc
Q 025101            4 DQTSRFKDLRGETIHHFV---SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL   80 (258)
Q Consensus         4 ~~~~~~~~~~G~~v~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~   80 (258)
                      .++..++  +||+|+++.   ..|+|++|+.++...++++|+++++.+++.+++.+.+|++++.....+.+|++++|+|+
T Consensus        76 ~~~~~~~--~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~  153 (309)
T cd05289          76 PGVTGFK--VGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGA  153 (309)
T ss_pred             CCCCCCC--CCCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecC
Confidence            3444577  899999764   25899999999999999999999999999999999999998877777899999999996


Q ss_pred             -CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHH
Q 025101           81 -GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQE  158 (258)
Q Consensus        81 -g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~  158 (258)
                       |.+|++++++++..|+ +|+++++++ +.+.++++|++.+++...   .++.+    ...+ ++|.++|++|+.. ...
T Consensus       154 ~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~~~~~~---~~~~~----~~~~~~~d~v~~~~~~~~-~~~  223 (309)
T cd05289         154 AGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEVIDYTK---GDFER----AAAPGGVDAVLDTVGGET-LAR  223 (309)
T ss_pred             CchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEEEeCCC---Cchhh----ccCCCCceEEEECCchHH-HHH
Confidence             9999999999999999 888888777 888888899888887765   34333    3333 8999999999885 899


Q ss_pred             HHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHH
Q 025101          159 AYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN  238 (258)
Q Consensus       159 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  238 (258)
                      ++++++++ |+++.+|......  .    ....++.++........  ...+.++++++.++.++  +.+++.|++++++
T Consensus       224 ~~~~l~~~-g~~v~~g~~~~~~--~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  292 (309)
T cd05289         224 SLALVKPG-GRLVSIAGPPPAE--Q----AAKRRGVRAGFVFVEPD--GEQLAELAELVEAGKLR--PVVDRVFPLEDAA  292 (309)
T ss_pred             HHHHHhcC-cEEEEEcCCCcch--h----hhhhccceEEEEEeccc--HHHHHHHHHHHHCCCEE--EeeccEEcHHHHH
Confidence            99999999 9999998643311  1    22344566555433221  45688899999988654  3467899999999


Q ss_pred             HHHHHHhcCCee-EEE
Q 025101          239 SAFDLLIKGKCL-RCV  253 (258)
Q Consensus       239 ~a~~~~~~~~~~-k~v  253 (258)
                      +|++.+..+... |++
T Consensus       293 ~a~~~~~~~~~~~kvv  308 (309)
T cd05289         293 EAHERLESGHARGKVV  308 (309)
T ss_pred             HHHHHHHhCCCCCcEe
Confidence            999998877655 665

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.86  E-value=6.9e-21  Score=137.24  Aligned_cols=128  Identities=28%  Similarity=0.491  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAY  160 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~  160 (258)
                      ++|++++|+||..|+ +|++++++++|+++++++|++.++++++   .++.+.+++.+++ ++|+||||+|.+..++.++
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~---~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~   76 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD---DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI   76 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT---SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc---cccccccccccccccceEEEEecCcHHHHHHHH
Confidence            589999999999996 9999999999999999999999999998   8899999999998 9999999999888899999


Q ss_pred             HhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHH
Q 025101          161 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYM  218 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (258)
                      ++++++ |+++.+|... ....+++...++.+++++.+++.++   .++++++++++.
T Consensus        77 ~~l~~~-G~~v~vg~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~la  129 (130)
T PF00107_consen   77 KLLRPG-GRIVVVGVYG-GDPISFNLMNLMFKEITIRGSWGGS---PEDFQEALQLLA  129 (130)
T ss_dssp             HHEEEE-EEEEEESSTS-TSEEEEEHHHHHHTTEEEEEESSGG---HHHHHHHHHHHH
T ss_pred             HHhccC-CEEEEEEccC-CCCCCCCHHHHHhCCcEEEEEccCC---HHHHHHHHHHhc
Confidence            999999 9999999876 4678888999999999999998655   578888888875

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.67  E-value=5e-15  Score=124.47  Aligned_cols=177  Identities=14%  Similarity=0.154  Sum_probs=138.9

Q ss_pred             hhhhhhhhcCC-CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHH
Q 025101           59 GVGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        59 a~~~l~~~~~~-~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~  137 (258)
                      .+.++.+..++ -+|++|+|+|+|++|+.+++.++.+|+ +|++++.++.|.+.++++|++.+ +        ..+.+  
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~--------~~e~v--  255 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-T--------MEEAV--  255 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-c--------HHHHH--
Confidence            34444444443 589999999999999999999999999 89999999999999999998433 1        11122  


Q ss_pred             hcCCCCCEEEEecCChhhHHHH-HHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHH--HHH
Q 025101          138 MTDGGADYCFECVGLASLVQEA-YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIP--ILL  214 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~~~~~~~~-~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  214 (258)
                         .++|+||+|+|.+..+... +..++++ |.++.+|..    ...++...+..+++++.+++....  ...++  ..+
T Consensus       256 ---~~aDVVI~atG~~~~i~~~~l~~mk~G-gilvnvG~~----~~eId~~~L~~~el~i~g~~~~~~--~~~~~~g~aI  325 (413)
T cd00401         256 ---KEGDIFVTTTGNKDIITGEHFEQMKDG-AIVCNIGHF----DVEIDVKGLKENAVEVVNIKPQVD--RYELPDGRRI  325 (413)
T ss_pred             ---cCCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEeCCC----CCccCHHHHHhhccEEEEccCCcc--eEEcCCcchh
Confidence               1689999999998878876 9999999 999999843    345677777888999998864331  12455  789


Q ss_pred             HHHHcCCC-CCCcccccc-----cccc-cHHHHHHHHhcCCee--EEEEeeC
Q 025101          215 KRYMDKEL-ELDKFVTHE-----MKFE-EINSAFDLLIKGKCL--RCVIWMG  257 (258)
Q Consensus       215 ~~~~~g~~-~~~~~~~~~-----~~~~-~~~~a~~~~~~~~~~--k~vi~~~  257 (258)
                      .++.+|++ .+.+.++|.     ++|+ |+.+++..+.++...  |+++.+.
T Consensus       326 ~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~  377 (413)
T cd00401         326 ILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK  377 (413)
T ss_pred             hhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence            99999988 888889898     8999 999999999876543  8877653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.56  E-value=7.4e-14  Score=120.29  Aligned_cols=155  Identities=20%  Similarity=0.260  Sum_probs=114.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCC----------CccHHHHHHH
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCG----------DKSVSQIIID  137 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~----------~~~~~~~i~~  137 (258)
                      ..++++|+|+|+|++|+++++.|+.+|+ +|++++.++++.+.++++|++.+ +|..+.+          .+++.+..++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            4579999999999999999999999999 89999999999999999999843 6654310          0123333333


Q ss_pred             h-cC--CCCCEEEEecCCh-----hh-HHHHHHhhhcCCceEEEecccCCCC-ceeechHHHHh-cCceEEecccCCCCC
Q 025101          138 M-TD--GGADYCFECVGLA-----SL-VQEAYACCRKGWGKTIVLGVDQPGS-QLSLSSFEVLH-SGKILMGSLFGGLKA  206 (258)
Q Consensus       138 ~-~~--~~~d~v~d~~g~~-----~~-~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~  206 (258)
                      . .+  +++|+||+|+|.+     .. .+++++.++++ |+++.+|...+.. ..+.+...++. +++++.|...  .  
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG-gvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n--~--  315 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG-SVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTD--L--  315 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC-CEEEEEccCCCCCcccccCccceEeECCEEEEEeCC--C--
Confidence            3 22  2799999999963     34 39999999999 9999999753321 23444445554 7999998752  2  


Q ss_pred             CCcHH-HHHHHHHcCCCCCCcccc
Q 025101          207 KSDIP-ILLKRYMDKELELDKFVT  229 (258)
Q Consensus       207 ~~~~~-~~~~~~~~g~~~~~~~~~  229 (258)
                      ...+. +..+++.++.+.+.++++
T Consensus       316 P~~~p~~As~lla~~~i~l~~lIt  339 (509)
T PRK09424        316 PSRLPTQSSQLYGTNLVNLLKLLC  339 (509)
T ss_pred             chhHHHHHHHHHHhCCccHHHHhc
Confidence            23455 589999999877766665

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.43  E-value=6e-14  Score=100.48  Aligned_cols=120  Identities=21%  Similarity=0.326  Sum_probs=77.2

Q ss_pred             cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC--ChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhc
Q 025101          115 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG--LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS  192 (258)
Q Consensus       115 ~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g--~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~  192 (258)
                      +|+++++|+++   +++      ..++++|+|||++|  ....+..+++++ ++ |+++.++.       .........+
T Consensus         1 LGAd~vidy~~---~~~------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~-G~~v~i~~-------~~~~~~~~~~   62 (127)
T PF13602_consen    1 LGADEVIDYRD---TDF------AGPGGVDVVIDTVGQTGESLLDASRKLL-PG-GRVVSIGG-------DLPSFARRLK   62 (127)
T ss_dssp             CT-SEEEETTC---SHH------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EE-EEEEEE-S-------HHHHHHHHHH
T ss_pred             CCcCEEecCCC---ccc------cCCCCceEEEECCCCccHHHHHHHHHHC-CC-CEEEEECC-------cccchhhhhc
Confidence            68999999997   666      22348999999999  555346777788 99 99998873       1111111122


Q ss_pred             CceEEecccCC--CC--CCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEE
Q 025101          193 GKILMGSLFGG--LK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  254 (258)
Q Consensus       193 ~~~~~~~~~~~--~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi  254 (258)
                      ...+.+.....  ..  ..+.++++++++.+|+++  +.+.++||++++.+|++.+++++.. |+||
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~--~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   63 GRSIRYSFLFSVDPNAIRAEALEELAELVAEGKLK--PPIDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             CHHCEEECCC-H--HHHHHHHHHHHHHHHHTTSS-----EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             ccceEEEEEEecCCCchHHHHHHHHHHHHHCCCeE--EeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence            23333332221  00  134599999999999655  4588899999999999999999888 9986

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.92  E-value=2.8e-08  Score=80.56  Aligned_cols=161  Identities=20%  Similarity=0.287  Sum_probs=100.4

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhc----CCceEEcCCCCCCccHHHHHHHh--
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDM--  138 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~i~~~--  138 (258)
                      ...+++|++||.+|+|+ |..++++++..|.. +|++++.+++..+.+++.    |...+- ...   .+    +.++  
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~-~~~---~d----~~~l~~  142 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVE-FRL---GE----IEALPV  142 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEE-EEE---cc----hhhCCC
Confidence            35678999999999987 88888888877753 799999999998888763    333221 111   11    2222  


Q ss_pred             cCCCCCEEEEec------CChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHH
Q 025101          139 TDGGADYCFECV------GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPI  212 (258)
Q Consensus       139 ~~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (258)
                      .++.||+|+...      .....+..+.+.|+|+ |++++.+..... .  .+  ..+.+...+.+.....   .....+
T Consensus       143 ~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~~~~~-~--~~--~~~~~~~~~~~~~~~~---~~~~~e  213 (272)
T PRK11873        143 ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPG-GRFAISDVVLRG-E--LP--EEIRNDAELYAGCVAG---ALQEEE  213 (272)
T ss_pred             CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCC-cEEEEEEeeccC-C--CC--HHHHHhHHHHhccccC---CCCHHH
Confidence            223799998543      2345689999999999 999987754322 1  11  1122222222111111   234566


Q ss_pred             HHHHHHc-CCCCCCcccccccccccHHHHHHHH
Q 025101          213 LLKRYMD-KELELDKFVTHEMKFEEINSAFDLL  244 (258)
Q Consensus       213 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~a~~~~  244 (258)
                      +.+++.+ |...........++++++.++++.+
T Consensus       214 ~~~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~  246 (272)
T PRK11873        214 YLAMLAEAGFVDITIQPKREYRIPDAREFLEDW  246 (272)
T ss_pred             HHHHHHHCCCCceEEEeccceecccHHHHHHHh
Confidence            6777765 4333333345668889999999888

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.89  E-value=2.1e-08  Score=86.68  Aligned_cols=108  Identities=19%  Similarity=0.222  Sum_probs=81.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce-EEcCCCC----------CCccHHHHHHHh
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNC----------GDKSVSQIIIDM  138 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~----------~~~~~~~~i~~~  138 (258)
                      .++++++|+|+|.+|++++++++.+|+ +|+++++++++++.++++|++. .++..+.          -.+++.+...++
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            357899999999999999999999999 8999999999999999999865 3332210          002333333333


Q ss_pred             cC---CCCCEEEEec---CChh---hHHHHHHhhhcCCceEEEecccCCC
Q 025101          139 TD---GGADYCFECV---GLAS---LVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       139 ~~---~~~d~v~d~~---g~~~---~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      ..   .++|+||+|+   |.+.   ..+++++.++++ +.++.++...+.
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIVDlA~d~GG  289 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIVDLAAEQGG  289 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEEEeeeCCCC
Confidence            33   2799999999   5433   567889999999 999999866553

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.70  E-value=5.4e-07  Score=76.61  Aligned_cols=104  Identities=21%  Similarity=0.244  Sum_probs=79.0

Q ss_pred             hhhhhhhhhcCCC-CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHH
Q 025101           58 TGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        58 ta~~~l~~~~~~~-~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~  136 (258)
                      .+|.++.+..++. .|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.+...+...|+. +.+        +.+.+ 
T Consensus       197 s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~~--------l~eal-  265 (425)
T PRK05476        197 SLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VMT--------MEEAA-  265 (425)
T ss_pred             hhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ecC--------HHHHH-
Confidence            3455554443444 89999999999999999999999999 899999998887766666764 321        22222 


Q ss_pred             HhcCCCCCEEEEecCChhhHH-HHHHhhhcCCceEEEecccC
Q 025101          137 DMTDGGADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~  177 (258)
                         . ++|+||+++|....+. ..+..++++ +.++..|...
T Consensus       266 ---~-~aDVVI~aTG~~~vI~~~~~~~mK~G-ailiNvG~~d  302 (425)
T PRK05476        266 ---E-LGDIFVTATGNKDVITAEHMEAMKDG-AILANIGHFD  302 (425)
T ss_pred             ---h-CCCEEEECCCCHHHHHHHHHhcCCCC-CEEEEcCCCC
Confidence               1 6999999999887676 677888888 8888888543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.67  E-value=4.3e-07  Score=74.25  Aligned_cols=96  Identities=20%  Similarity=0.290  Sum_probs=76.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .+++++|+|.|.+|+.+++.++.+|+ +|+++++++++.+.++++|+..+ ..     +++.    +... ++|+||+|+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~-----~~l~----~~l~-~aDiVI~t~  218 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL-----SELA----EEVG-KIDIIFNTI  218 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH-----HHHH----HHhC-CCCEEEECC
Confidence            58999999999999999999999999 99999999988888888887532 21     1222    2222 699999999


Q ss_pred             CChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          151 GLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       151 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      +........++.++++ +.++.++..++.
T Consensus       219 p~~~i~~~~l~~~~~g-~vIIDla~~pgg  246 (296)
T PRK08306        219 PALVLTKEVLSKMPPE-ALIIDLASKPGG  246 (296)
T ss_pred             ChhhhhHHHHHcCCCC-cEEEEEccCCCC
Confidence            8765456777889998 999999876654

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.59  E-value=1.5e-07  Score=77.59  Aligned_cols=108  Identities=21%  Similarity=0.242  Sum_probs=79.8

Q ss_pred             ceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCC----CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchH-
Q 025101           35 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANV----EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF-  109 (258)
Q Consensus        35 ~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~----~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~-  109 (258)
                      +.++++|+.++.+.+.... +.+++++++. .+..    -++.+|+|+|+|.+|..+++.++..|..+|+++++++++. 
T Consensus       139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~-~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~  216 (311)
T cd05213         139 QKAIKVGKRVRTETGISRG-AVSISSAAVE-LAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE  216 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCC-CcCHHHHHHH-HHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence            3567788888888877765 6677777643 3322    3689999999999999999999988877899999998875 


Q ss_pred             HHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhh
Q 025101          110 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASL  155 (258)
Q Consensus       110 ~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~  155 (258)
                      ++++++|+. +++.     +++.+.+.     .+|+||.|++.+..
T Consensus       217 ~la~~~g~~-~~~~-----~~~~~~l~-----~aDvVi~at~~~~~  251 (311)
T cd05213         217 ELAKELGGN-AVPL-----DELLELLN-----EADVVISATGAPHY  251 (311)
T ss_pred             HHHHHcCCe-EEeH-----HHHHHHHh-----cCCEEEECCCCCch
Confidence            677788873 3332     12322222     58999999998774

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.57  E-value=1.5e-06  Score=73.43  Aligned_cols=101  Identities=22%  Similarity=0.270  Sum_probs=76.8

Q ss_pred             hhhhhhhcC-CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHh
Q 025101           60 VGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        60 ~~~l~~~~~-~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      +.++.+..+ ...|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.+...++..|+. +.+        ..+.+   
T Consensus       182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~--------leeal---  248 (406)
T TIGR00936       182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMT--------MEEAA---  248 (406)
T ss_pred             HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCC--------HHHHH---
Confidence            344434333 3679999999999999999999999999 899999888887777777763 321        11222   


Q ss_pred             cCCCCCEEEEecCChhhHHH-HHHhhhcCCceEEEeccc
Q 025101          139 TDGGADYCFECVGLASLVQE-AYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       139 ~~~~~d~v~d~~g~~~~~~~-~~~~l~~~~G~~v~~g~~  176 (258)
                        .+.|+||+++|....+.. .+..++++ +.++..|..
T Consensus       249 --~~aDVVItaTG~~~vI~~~~~~~mK~G-ailiN~G~~  284 (406)
T TIGR00936       249 --KIGDIFITATGNKDVIRGEHFENMKDG-AIVANIGHF  284 (406)
T ss_pred             --hcCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEECCC
Confidence              158999999999887764 78888888 888888754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02494 adenosylhomocysteinase

Probab=98.45  E-value=3.3e-06  Score=72.17  Aligned_cols=101  Identities=18%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             hhhhhhhcCC-CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHh
Q 025101           60 VGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        60 ~~~l~~~~~~-~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      +.++.+..++ -.|++++|+|.|.+|+.+++.++.+|+ +|+++++++.+...+...|.. +++        ..+.+.  
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~-vv~--------leEal~--  308 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQ-VLT--------LEDVVS--  308 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCe-ecc--------HHHHHh--
Confidence            3344444333 579999999999999999999999999 899999988877677777764 221        222222  


Q ss_pred             cCCCCCEEEEecCChhhH-HHHHHhhhcCCceEEEeccc
Q 025101          139 TDGGADYCFECVGLASLV-QEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       139 ~~~~~d~v~d~~g~~~~~-~~~~~~l~~~~G~~v~~g~~  176 (258)
                         ..|++++++|....+ ...+..++++ +.++.+|..
T Consensus       309 ---~ADVVI~tTGt~~vI~~e~L~~MK~G-AiLiNvGr~  343 (477)
T PLN02494        309 ---EADIFVTTTGNKDIIMVDHMRKMKNN-AIVCNIGHF  343 (477)
T ss_pred             ---hCCEEEECCCCccchHHHHHhcCCCC-CEEEEcCCC
Confidence               589999999987743 7899999999 999999864

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.3e-06  Score=66.51  Aligned_cols=117  Identities=18%  Similarity=0.206  Sum_probs=84.6

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHhcCCce
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVTE  119 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~----~~~~g~~~  119 (258)
                      ++.....++..+...|..  .+...+++|++||-+|+|+ |..++-+++..|  +|+.+++.++=.+.    ++.+|..+
T Consensus        47 lpi~~gqtis~P~~vA~m--~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~n  121 (209)
T COG2518          47 LPIGCGQTISAPHMVARM--LQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYEN  121 (209)
T ss_pred             ccCCCCceecCcHHHHHH--HHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence            344455555556666653  4788999999999999984 999999999888  89999988874444    45678654


Q ss_pred             EE-cCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          120 FV-NSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       120 vi-~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      |. ...+        .-..+.+. .||.|+-+.+.+..-+..++.|+++ |+++..-
T Consensus       122 V~v~~gD--------G~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~g-Grlv~Pv  169 (209)
T COG2518         122 VTVRHGD--------GSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPG-GRLVIPV  169 (209)
T ss_pred             eEEEECC--------cccCCCCCCCcCEEEEeeccCCCCHHHHHhcccC-CEEEEEE
Confidence            32 2222        12233343 8999998888877567889999999 9987664

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.31  E-value=8.8e-06  Score=68.73  Aligned_cols=99  Identities=21%  Similarity=0.261  Sum_probs=70.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+.. ++........+  .+++.+.+    . .+|+||+|
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~--~~~l~~~l----~-~aDvVI~a  237 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN--AYEIEDAV----K-RADLLIGA  237 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC--HHHHHHHH----c-cCCEEEEc
Confidence            34569999999999999999999999 89999999888776654 55432222221  12222222    2 69999999


Q ss_pred             c---CC--hh-hHHHHHHhhhcCCceEEEecccCC
Q 025101          150 V---GL--AS-LVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       150 ~---g~--~~-~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      +   +.  +. .....+..++++ +.++.++...+
T Consensus       238 ~~~~g~~~p~lit~~~l~~mk~g-~vIvDva~d~G  271 (370)
T TIGR00518       238 VLIPGAKAPKLVSNSLVAQMKPG-AVIVDVAIDQG  271 (370)
T ss_pred             cccCCCCCCcCcCHHHHhcCCCC-CEEEEEecCCC
Confidence            7   32  21 136777889998 99999986554

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.29  E-value=2.1e-05  Score=62.94  Aligned_cols=139  Identities=21%  Similarity=0.229  Sum_probs=88.5

Q ss_pred             CCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHH
Q 025101           13 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR   92 (258)
Q Consensus        13 ~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~   92 (258)
                      .|++++-.+   +|.+|.. +...++++++++++..+. .+.... .+..+.  ..+.++++||.+|+|. |..++.+++
T Consensus        69 ~g~~~~i~p---~~~~~~~-~~~~~i~i~p~~afgtg~-h~tt~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~  139 (250)
T PRK00517         69 IGDRLWIVP---SWEDPPD-PDEINIELDPGMAFGTGT-HPTTRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK  139 (250)
T ss_pred             EcCCEEEEC---CCcCCCC-CCeEEEEECCCCccCCCC-CHHHHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH
Confidence            566555322   4667654 777788888888877654 221111 122221  1256889999999986 887776555


Q ss_pred             HcCCCeEEEEcCCcchHHHHHhc----CCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCCh---hhHHHHHHhhh
Q 025101           93 LCGATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA---SLVQEAYACCR  164 (258)
Q Consensus        93 ~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~---~~~~~~~~~l~  164 (258)
                       .|+.+|++++.++...+.+++.    +....+....              +. .||+|+-+....   ..++.+.+.++
T Consensus       140 -~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~--------------~~~~fD~Vvani~~~~~~~l~~~~~~~Lk  204 (250)
T PRK00517        140 -LGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ--------------GDLKADVIVANILANPLLELAPDLARLLK  204 (250)
T ss_pred             -cCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc--------------CCCCcCEEEEcCcHHHHHHHHHHHHHhcC
Confidence             5775799999999888877652    2211111111              11 599998765443   23668888999


Q ss_pred             cCCceEEEeccc
Q 025101          165 KGWGKTIVLGVD  176 (258)
Q Consensus       165 ~~~G~~v~~g~~  176 (258)
                      |+ |.++..|..
T Consensus       205 pg-G~lilsgi~  215 (250)
T PRK00517        205 PG-GRLILSGIL  215 (250)
T ss_pred             CC-cEEEEEECc
Confidence            99 999987643

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.23  E-value=2.6e-05  Score=66.97  Aligned_cols=100  Identities=20%  Similarity=0.280  Sum_probs=75.2

Q ss_pred             hhhhhhcC-CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhc
Q 025101           61 GAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        61 ~~l~~~~~-~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      .++.+..+ .-.|++++|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+. +.        ++.+.++   
T Consensus       242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~-~~--------~leell~---  308 (476)
T PTZ00075        242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQ-VV--------TLEDVVE---  308 (476)
T ss_pred             HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCce-ec--------cHHHHHh---
Confidence            44444333 3479999999999999999999999999 899998887776555556653 22        1222222   


Q ss_pred             CCCCCEEEEecCChhhHH-HHHHhhhcCCceEEEeccc
Q 025101          140 DGGADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       140 ~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~  176 (258)
                        ..|+|+.++|....+. ..+..++++ +.++.+|..
T Consensus       309 --~ADIVI~atGt~~iI~~e~~~~MKpG-AiLINvGr~  343 (476)
T PTZ00075        309 --TADIFVTATGNKDIITLEHMRRMKNN-AIVGNIGHF  343 (476)
T ss_pred             --cCCEEEECCCcccccCHHHHhccCCC-cEEEEcCCC
Confidence              6999999999877664 889999999 999988854

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.23  E-value=4.8e-05  Score=61.98  Aligned_cols=95  Identities=18%  Similarity=0.221  Sum_probs=71.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|++++|+|.|.+|.++++.++.+|+ +|++.++++++.+.+.+.|.. .+..     +++.+.+    . ++|+||+|+
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~-~~~~-----~~l~~~l----~-~aDiVint~  217 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLI-PFPL-----NKLEEKV----A-EIDIVINTI  217 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe-eecH-----HHHHHHh----c-cCCEEEECC
Confidence            57899999999999999999999999 999999998887777777753 2211     1222222    1 699999999


Q ss_pred             CChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          151 GLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       151 g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      +....-...++.++++ ..++.++..++
T Consensus       218 P~~ii~~~~l~~~k~~-aliIDlas~Pg  244 (287)
T TIGR02853       218 PALVLTADVLSKLPKH-AVIIDLASKPG  244 (287)
T ss_pred             ChHHhCHHHHhcCCCC-eEEEEeCcCCC
Confidence            7654234566778887 88888886554

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08324 short chain dehydrogenase; Validated

Probab=98.21  E-value=1.6e-05  Score=72.78  Aligned_cols=137  Identities=20%  Similarity=0.269  Sum_probs=87.4

Q ss_pred             ceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEc
Q 025101           25 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  103 (258)
Q Consensus        25 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~  103 (258)
                      ++++|..+|+..++.+ +..+.+++.....          ...+.-+|+++||+|+ |++|+.+++.+...|+ +|++++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            5678888888777776 5566666542110          0122346899999986 9999999999999999 899999


Q ss_pred             CCcchHHHHH-hcCC--c---eEEcCCCCCCcc-HHHHHHHhc--CCCCCEEEEecCCh---------------------
Q 025101          104 VISEKFEIGK-RFGV--T---EFVNSKNCGDKS-VSQIIIDMT--DGGADYCFECVGLA---------------------  153 (258)
Q Consensus       104 ~~~~~~~~~~-~~g~--~---~vi~~~~~~~~~-~~~~i~~~~--~~~~d~v~d~~g~~---------------------  153 (258)
                      +++++.+.+. +++.  .   ...|..+   .+ +...+.+..  .+++|++|++.|..                     
T Consensus       454 r~~~~~~~~~~~l~~~~~v~~v~~Dvtd---~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~  530 (681)
T PRK08324        454 LDEEAAEAAAAELGGPDRALGVACDVTD---EAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNA  530 (681)
T ss_pred             CCHHHHHHHHHHHhccCcEEEEEecCCC---HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHh
Confidence            9988766543 3432  1   1234333   33 222233221  23799999999831                     


Q ss_pred             ----hhHHHHHHhhhc---CCceEEEecccC
Q 025101          154 ----SLVQEAYACCRK---GWGKTIVLGVDQ  177 (258)
Q Consensus       154 ----~~~~~~~~~l~~---~~G~~v~~g~~~  177 (258)
                          ..++.++..++.   + |+++.+++..
T Consensus       531 ~g~~~l~~~~~~~l~~~~~~-g~iV~vsS~~  560 (681)
T PRK08324        531 TGHFLVAREAVRIMKAQGLG-GSIVFIASKN  560 (681)
T ss_pred             HHHHHHHHHHHHHHHhcCCC-cEEEEECCcc
Confidence                123444556655   5 8899888643

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.20  E-value=2.9e-06  Score=75.87  Aligned_cols=80  Identities=19%  Similarity=0.240  Sum_probs=58.8

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC---------------------cchHHHHHhcCCceEEcCCCC
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---------------------SEKFEIGKRFGVTEFVNSKNC  126 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~---------------------~~~~~~~~~~g~~~vi~~~~~  126 (258)
                      .+.+|++|+|+|+|+.|+++++.++..|+ +|++++..                     +.+.+.++++|++..++....
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            36789999999999999999999999999 89998853                     245567788998766654320


Q ss_pred             CCccH-HHHHHHhcCCCCCEEEEecCChh
Q 025101          127 GDKSV-SQIIIDMTDGGADYCFECVGLAS  154 (258)
Q Consensus       127 ~~~~~-~~~i~~~~~~~~d~v~d~~g~~~  154 (258)
                        .+. .+.+.    .++|+||+++|...
T Consensus       212 --~~~~~~~~~----~~~D~Vi~AtG~~~  234 (564)
T PRK12771        212 --EDITLEQLE----GEFDAVFVAIGAQL  234 (564)
T ss_pred             --CcCCHHHHH----hhCCEEEEeeCCCC
Confidence              111 12221    26999999999764

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.14  E-value=1.3e-05  Score=57.72  Aligned_cols=75  Identities=24%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc--eEEcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      -++.+++|+|+|++|.+++..+...|+++|+++.|+.+|.+.+ ++++..  .+++..+     +.+.+.     .+|+|
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~-----~~~~~~-----~~Div   79 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED-----LEEALQ-----EADIV   79 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG-----HCHHHH-----TESEE
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH-----HHHHHh-----hCCeE
Confidence            3689999999999999999999999997899999999887655 456422  3444433     322222     69999


Q ss_pred             EEecCChh
Q 025101          147 FECVGLAS  154 (258)
Q Consensus       147 ~d~~g~~~  154 (258)
                      |+|++.+.
T Consensus        80 I~aT~~~~   87 (135)
T PF01488_consen   80 INATPSGM   87 (135)
T ss_dssp             EE-SSTTS
T ss_pred             EEecCCCC
Confidence            99998764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.14  E-value=4.2e-06  Score=72.04  Aligned_cols=89  Identities=21%  Similarity=0.281  Sum_probs=62.9

Q ss_pred             hhhhhhhhhhhhc---CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhcCCceEEcCCCCCCcc
Q 025101           55 GVSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKS  130 (258)
Q Consensus        55 ~~~ta~~~l~~~~---~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~  130 (258)
                      +.+.+++++....   ...++++|+|+|+|.+|.++++.++..|+.+|+++.++.++.+ +++++|.+ +++..     +
T Consensus       162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~~-----~  235 (423)
T PRK00045        162 AVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-AIPLD-----E  235 (423)
T ss_pred             CcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-EeeHH-----H
Confidence            4555566543221   2257899999999999999999999999878999999988855 66778753 33221     2


Q ss_pred             HHHHHHHhcCCCCCEEEEecCChh
Q 025101          131 VSQIIIDMTDGGADYCFECVGLAS  154 (258)
Q Consensus       131 ~~~~i~~~~~~~~d~v~d~~g~~~  154 (258)
                      ..+.+     .++|+||+|+|.+.
T Consensus       236 ~~~~l-----~~aDvVI~aT~s~~  254 (423)
T PRK00045        236 LPEAL-----AEADIVISSTGAPH  254 (423)
T ss_pred             HHHHh-----ccCCEEEECCCCCC
Confidence            22222     16999999999765

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.01  E-value=0.0001  Score=55.12  Aligned_cols=102  Identities=21%  Similarity=0.298  Sum_probs=72.0

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCceEEcCCCCCCccHHHHHHHhcC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      ..+++++|+.++=+|+|. |...+++++.....+|++++++++..+..+    ++|.+++.-..    .+..+.+.++. 
T Consensus        28 s~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~----g~Ap~~L~~~~-  101 (187)
T COG2242          28 SKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE----GDAPEALPDLP-  101 (187)
T ss_pred             HhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe----ccchHhhcCCC-
Confidence            456789999888889874 888889996655559999999999887764    58876432221    12223333221 


Q ss_pred             CCCCEEEEecCC--hhhHHHHHHhhhcCCceEEEec
Q 025101          141 GGADYCFECVGL--ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                       .+|.+|---|.  +..++.++..++++ |+++.-.
T Consensus       102 -~~daiFIGGg~~i~~ile~~~~~l~~g-grlV~na  135 (187)
T COG2242         102 -SPDAIFIGGGGNIEEILEAAWERLKPG-GRLVANA  135 (187)
T ss_pred             -CCCEEEECCCCCHHHHHHHHHHHcCcC-CeEEEEe
Confidence             59999954432  44688999999999 9998654

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=98.01  E-value=0.00023  Score=56.81  Aligned_cols=79  Identities=24%  Similarity=0.297  Sum_probs=57.1

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----cCCc-eE--EcCCCCCCccHHHHHHH-hc
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVT-EF--VNSKNCGDKSVSQIIID-MT  139 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-----~g~~-~v--i~~~~~~~~~~~~~i~~-~~  139 (258)
                      ..+.++||+|+ +++|...+..+...|+ +++.+.|+++|++.+.+     .|.. .+  +|..+   .+-...+.+ +.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~---~~~~~~l~~~l~   79 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSD---PEALERLEDELK   79 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCC---hhHHHHHHHHHH
Confidence            46789999997 8999999999999999 99999999999876633     3322 22  34444   444444443 22


Q ss_pred             -CC-CCCEEEEecCC
Q 025101          140 -DG-GADYCFECVGL  152 (258)
Q Consensus       140 -~~-~~d~v~d~~g~  152 (258)
                       .+ .+|+.+++.|.
T Consensus        80 ~~~~~IdvLVNNAG~   94 (265)
T COG0300          80 ERGGPIDVLVNNAGF   94 (265)
T ss_pred             hcCCcccEEEECCCc
Confidence             22 79999999986

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.99  E-value=4.2e-05  Score=59.51  Aligned_cols=79  Identities=22%  Similarity=0.292  Sum_probs=59.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC----ceEEcCCCCCCccHHHHHHHhcCC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV----TEFVNSKNCGDKSVSQIIIDMTDG--G  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~----~~vi~~~~~~~~~~~~~i~~~~~~--~  142 (258)
                      +++.++|+|+ +++|.+.++.+...|+ +|+.+.|..++++.+ .+++.    ...+|-.+  .+.....+..+...  .
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD--~~~~~~~i~~~~~~~g~   81 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD--RAAVEAAIEALPEEFGR   81 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC--HHHHHHHHHHHHHhhCc
Confidence            4578999997 7999999999999999 999999999998765 45772    23455555  13444455555444  6


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|+.+++.|-
T Consensus        82 iDiLvNNAGl   91 (246)
T COG4221          82 IDILVNNAGL   91 (246)
T ss_pred             ccEEEecCCC
Confidence            9999998875

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.97  E-value=8e-05  Score=63.25  Aligned_cols=113  Identities=18%  Similarity=0.239  Sum_probs=77.0

Q ss_pred             hcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc
Q 025101           51 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS  130 (258)
Q Consensus        51 ~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  130 (258)
                      .+..+-...+..+.+..++++|++||.+|+| .|..+..+++..|+ +|++++.+++..+.+++.....-++...   .+
T Consensus       147 ~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~---~D  221 (383)
T PRK11705        147 TLEEAQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRL---QD  221 (383)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEE---Cc
Confidence            3443444555556677888999999999997 47788888988888 9999999999999887643211111111   12


Q ss_pred             HHHHHHHhcCCCCCEEEEe-----cCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          131 VSQIIIDMTDGGADYCFEC-----VGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       131 ~~~~i~~~~~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.    +. .+.+|.|+..     +|.   +..+..+.+.|+|+ |.+++..
T Consensus       222 ~~----~l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG-G~lvl~~  267 (383)
T PRK11705        222 YR----DL-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD-GLFLLHT  267 (383)
T ss_pred             hh----hc-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence            21    11 2479998743     343   24478889999999 9988754

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.88  E-value=0.00011  Score=60.02  Aligned_cols=97  Identities=20%  Similarity=0.257  Sum_probs=64.8

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCce-EEcCCCCCCccHHHHHHHhcCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTE-FVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~~-vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      ..++++||-+|+|. |..++.+++ .|+.+|++++.++...+.+++.    +... +.....    +    ......++|
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~----~----~~~~~~~~f  226 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI----Y----LEQPIEGKA  226 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec----c----cccccCCCc
Confidence            45789999999987 877777665 5766999999999888777652    2211 111111    1    111122379


Q ss_pred             CEEEEecCCh---hhHHHHHHhhhcCCceEEEeccc
Q 025101          144 DYCFECVGLA---SLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       144 d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      |+|+.+....   ..+..+.+.++|+ |.++..|..
T Consensus       227 DlVvan~~~~~l~~ll~~~~~~Lkpg-G~li~sgi~  261 (288)
T TIGR00406       227 DVIVANILAEVIKELYPQFSRLVKPG-GWLILSGIL  261 (288)
T ss_pred             eEEEEecCHHHHHHHHHHHHHHcCCC-cEEEEEeCc
Confidence            9999755433   3466778999999 999887743

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.87  E-value=0.0003  Score=55.66  Aligned_cols=103  Identities=21%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc---CCceEE--cCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF---GVTEFV--NSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~---g~~~vi--~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      ++++++|+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ +++   +..+.+  |..+  .+.+...+.+...  +
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~   80 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS--TESARNVIEKAAKVLN   80 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            4689999987 8999999999999999 999999998877655 222   221222  2222  1222222222211  2


Q ss_pred             CCCEEEEecCChh-----------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          142 GADYCFECVGLAS-----------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       142 ~~d~v~d~~g~~~-----------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      ++|.++.+.|...                       .++..+..+.++ |+++.++...
T Consensus        81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~~  138 (238)
T PRK05786         81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEG-SSIVLVSSMS  138 (238)
T ss_pred             CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CEEEEEecch
Confidence            6899998886420                       134455566677 8898888653

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.85  E-value=0.00019  Score=54.65  Aligned_cols=112  Identities=19%  Similarity=0.177  Sum_probs=74.6

Q ss_pred             CCCEEEEEcc--CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCc-eEEcCCCC-CCccHHHHHHHhcCCCCCE
Q 025101           71 VGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFVNSKNC-GDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~--g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~vi~~~~~-~~~~~~~~i~~~~~~~~d~  145 (258)
                      ..+.|||+|+  |++|.+++.-...-|+ .|+++.|+-++++.+. ++|.. .-+|..+. +...+..++++-+.|..|+
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~   84 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL   84 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEE
Confidence            4568999974  8999999888888899 9999999999988776 67742 23444430 1122334555555668999


Q ss_pred             EEEecCChh----------hHH----------------HHHHhhhcCCceEEEecccCCCCceee
Q 025101          146 CFECVGLAS----------LVQ----------------EAYACCRKGWGKTIVLGVDQPGSQLSL  184 (258)
Q Consensus       146 v~d~~g~~~----------~~~----------------~~~~~l~~~~G~~v~~g~~~~~~~~~~  184 (258)
                      .+++.|.+-          .++                ..-..++.. |+++.+|+..+--+++|
T Consensus        85 L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaK-GtIVnvgSl~~~vpfpf  148 (289)
T KOG1209|consen   85 LYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAK-GTIVNVGSLAGVVPFPF  148 (289)
T ss_pred             EEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHcc-ceEEEecceeEEeccch
Confidence            999777531          011                112345666 99999987655334443

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.84  E-value=0.00024  Score=54.75  Aligned_cols=102  Identities=20%  Similarity=0.405  Sum_probs=69.8

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHH----hcC-CceEEcCCCCCCccHHHHHHHh
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK----RFG-VTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~----~~g-~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ....+.++++|+.+|+|. |.+++.+++..+. .+|++++.+++..+.++    ++| .+.+....    .+..+.+...
T Consensus        34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~----~d~~~~l~~~  108 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK----GEAPEILFTI  108 (198)
T ss_pred             HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE----echhhhHhhc
Confidence            456788999999999987 9999999887642 38999999998887664    356 33222111    1222222222


Q ss_pred             cCCCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEe
Q 025101          139 TDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       139 ~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  173 (258)
                       .+.+|.||...+.   ...+..+.+.|+|+ |+++..
T Consensus       109 -~~~~D~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~  144 (198)
T PRK00377        109 -NEKFDRIFIGGGSEKLKEIISASWEIIKKG-GRIVID  144 (198)
T ss_pred             -CCCCCEEEECCCcccHHHHHHHHHHHcCCC-cEEEEE
Confidence             2379999985543   34577888899999 998753

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.80  E-value=0.00029  Score=58.26  Aligned_cols=102  Identities=22%  Similarity=0.315  Sum_probs=71.5

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHH----hcCCceEEcCCCCCCccHHHHHHHh
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      .+...++++++||.+|+| .|..++.+++..+. ..|++++.+++..+.++    +.|.+.+....    .+..+.+.+.
T Consensus        73 l~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~----gD~~~~~~~~  147 (322)
T PRK13943         73 MEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC----GDGYYGVPEF  147 (322)
T ss_pred             HHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe----CChhhccccc
Confidence            355678899999999998 49999999998763 26999999998766654    36655432222    2222222111


Q ss_pred             cCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEe
Q 025101          139 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       139 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                        +.+|+|+.+.+.........+.++++ |+++..
T Consensus       148 --~~fD~Ii~~~g~~~ip~~~~~~Lkpg-G~Lvv~  179 (322)
T PRK13943        148 --APYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP  179 (322)
T ss_pred             --CCccEEEECCchHHhHHHHHHhcCCC-CEEEEE
Confidence              26999999888766566788899999 997763

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.75  E-value=0.0006  Score=52.07  Aligned_cols=100  Identities=19%  Similarity=0.165  Sum_probs=63.8

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcCC-C
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDG-G  142 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~-~  142 (258)
                      ...+++|++||.+|+|+-+ .+..+++.. +..+|++++.++.+    +..++..+ .|..+   .+..+.+.+..++ +
T Consensus        27 ~~~i~~g~~VLDiG~GtG~-~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~---~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGG-WSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTD---EEVLNKIRERVGDDK   98 (188)
T ss_pred             hcccCCCCEEEEecCCCCH-HHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCC---hhHHHHHHHHhCCCC
Confidence            4556899999999987644 444444443 43389999998864    11233311 23333   4445556555555 8


Q ss_pred             CCEEEE-ec----CC------------hhhHHHHHHhhhcCCceEEEec
Q 025101          143 ADYCFE-CV----GL------------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       143 ~d~v~d-~~----g~------------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +|+|+. ..    |.            ...+..+.+.++|+ |+++...
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~  146 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKV  146 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEE
Confidence            999995 32    21            24577889999999 9998754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.74  E-value=0.00041  Score=58.35  Aligned_cols=95  Identities=17%  Similarity=0.159  Sum_probs=67.8

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC---Cc-eEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG---VT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g---~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      ++|||+|+|.+|+.+++.+...|-.+|++++|+.++.+.+.+..   .. ..+|..+  .+.+.+.|+     ++|+||+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d--~~al~~li~-----~~d~VIn   74 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD--VDALVALIK-----DFDLVIN   74 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC--hHHHHHHHh-----cCCEEEE
Confidence            57999999999999999988888449999999999998887653   22 3455544  123333333     4699999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEecc
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      +.+.......+-.|++.+ =.++....
T Consensus        75 ~~p~~~~~~i~ka~i~~g-v~yvDts~  100 (389)
T COG1748          75 AAPPFVDLTILKACIKTG-VDYVDTSY  100 (389)
T ss_pred             eCCchhhHHHHHHHHHhC-CCEEEccc
Confidence            999877565555666665 55665553

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.73  E-value=0.00021  Score=61.50  Aligned_cols=77  Identities=21%  Similarity=0.287  Sum_probs=57.7

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCE
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~  145 (258)
                      .+..++++|+|+|+|.+|..+++.++..|+.+|+++.++.++.+ +++++|.. .++.     +++.+.+.     ++|+
T Consensus       175 ~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~-~i~~-----~~l~~~l~-----~aDv  243 (417)
T TIGR01035       175 FGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGE-AVKF-----EDLEEYLA-----EADI  243 (417)
T ss_pred             hCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCe-EeeH-----HHHHHHHh-----hCCE
Confidence            34467899999999999999999999999668999999988754 66777763 3322     12222222     6999


Q ss_pred             EEEecCChh
Q 025101          146 CFECVGLAS  154 (258)
Q Consensus       146 v~d~~g~~~  154 (258)
                      ||+|++.+.
T Consensus       244 Vi~aT~s~~  252 (417)
T TIGR01035       244 VISSTGAPH  252 (417)
T ss_pred             EEECCCCCC
Confidence            999998765

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.73  E-value=0.00019  Score=54.28  Aligned_cols=80  Identities=20%  Similarity=0.233  Sum_probs=58.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC---CceEEcCCCC-CCccHHHHHHHhcCCCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG---VTEFVNSKNC-GDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g---~~~vi~~~~~-~~~~~~~~i~~~~~~~~d~  145 (258)
                      .|.+|||+|+ +++|+.+++-...+|- +||+..|++++++.++..-   .+.+.|..+. +-..+++++++-.+ ..++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P-~lNv   81 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYP-NLNV   81 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCC-chhe
Confidence            4789999975 7999999999999998 9999999999998887643   2344555440 11225555554333 5889


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      ++++.|-
T Consensus        82 liNNAGI   88 (245)
T COG3967          82 LINNAGI   88 (245)
T ss_pred             eeecccc
Confidence            9988875

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=97.73  E-value=0.0015  Score=53.28  Aligned_cols=113  Identities=10%  Similarity=0.061  Sum_probs=75.3

Q ss_pred             hhhhhhhhhhhhcC---CCCCCEEEEEcc-CHHHHHHHHHHH-HcCCCeEEEEcCCcchHHHHHhcCC-ceEEcCCCCCC
Q 025101           55 GVSTGVGAAWRTAN---VEVGSTVVIFGL-GSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGD  128 (258)
Q Consensus        55 ~~~ta~~~l~~~~~---~~~g~~vlI~G~-g~~G~~a~~l~~-~~g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~  128 (258)
                      .+.|.|.. .+...   .-..+.|+|..+ +-+++.++..++ ..+.-+++.++ |+...++.+.+|+ +.++.|++   
T Consensus       117 Lf~Tsfll-~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve~lg~Yd~V~~Yd~---  191 (314)
T PF11017_consen  117 LFITSFLL-DDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVESLGCYDEVLTYDD---  191 (314)
T ss_pred             HHHHHHHH-HHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhhccCCceEEeehhh---
Confidence            55666653 22221   223457777766 788888888887 44444889887 6677789999995 67887765   


Q ss_pred             ccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          129 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       129 ~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                            |..+....--+++|..|+......+...+...=-..+.+|....
T Consensus       192 ------i~~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th~  235 (314)
T PF11017_consen  192 ------IDSLDAPQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATHW  235 (314)
T ss_pred             ------hhhccCCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccCc
Confidence                  44443334557779999999777888888764134566775543

>PRK04148 hypothetical protein; Provisional

Probab=97.72  E-value=0.0011  Score=47.08  Aligned_cols=89  Identities=18%  Similarity=0.242  Sum_probs=61.7

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      ...++.+++++|.| .|...+..+...|. .|++++.+++..+.+++.+.+.+.+.--.++.++.+        ++|+++
T Consensus        13 ~~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~--------~a~liy   82 (134)
T PRK04148         13 EKGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYK--------NAKLIY   82 (134)
T ss_pred             ccccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHh--------cCCEEE
Confidence            33467899999999 78766666667898 999999999999989888865443322111122221        799999


Q ss_pred             EecCChhhHHHHHHhhhcC
Q 025101          148 ECVGLASLVQEAYACCRKG  166 (258)
Q Consensus       148 d~~g~~~~~~~~~~~l~~~  166 (258)
                      ..-..++....+++..+.-
T Consensus        83 sirpp~el~~~~~~la~~~  101 (134)
T PRK04148         83 SIRPPRDLQPFILELAKKI  101 (134)
T ss_pred             EeCCCHHHHHHHHHHHHHc
Confidence            9988888444555555544

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.69  E-value=0.0004  Score=56.46  Aligned_cols=79  Identities=18%  Similarity=0.277  Sum_probs=55.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHH---HHHHHhcCCCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVS---QIIIDMTDGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~---~~i~~~~~~~~d~  145 (258)
                      .+++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+.+.+...+ .|..+  .+++.   +.+.+..++.+|+
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAE--PESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCC--HHHHHHHHHHHHHHcCCCccE
Confidence            4678999987 9999999998888899 89999999888877766665422 34443  12222   2222333347999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      +|++.|.
T Consensus        80 li~~Ag~   86 (277)
T PRK05993         80 LFNNGAY   86 (277)
T ss_pred             EEECCCc
Confidence            9998763

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.67  E-value=0.00078  Score=54.23  Aligned_cols=111  Identities=23%  Similarity=0.304  Sum_probs=70.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E----EcCCCCCCccHHHHHHHhc-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F----VNSKNCGDKSVSQIIIDMT-  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v----i~~~~~~~~~~~~~i~~~~-  139 (258)
                      .|+.|+|+|+ +++|.+++.-....|+ +++.+.+..++++.+    ++.+... +    .|-.+  .++..+.+.+.. 
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~--~~~~~~~~~~~~~   87 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD--EESVKKFVEWAIR   87 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC--HHHHHHHHHHHHH
Confidence            5789999998 7999887777777899 788888888877665    3444322 2    12222  123333332221 


Q ss_pred             -CCCCCEEEEecCChh-------------------------hHHHHHHhhhcCC-ceEEEecccCCCCceee
Q 025101          140 -DGGADYCFECVGLAS-------------------------LVQEAYACCRKGW-GKTIVLGVDQPGSQLSL  184 (258)
Q Consensus       140 -~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~  184 (258)
                       -|++|+.+++.|-..                         ....++..+++.+ |+++.+++..+....++
T Consensus        88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~  159 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPF  159 (282)
T ss_pred             hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCc
Confidence             237999999887521                         2345666666543 99999987776544443

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.66  E-value=0.00077  Score=52.23  Aligned_cols=107  Identities=20%  Similarity=0.251  Sum_probs=74.3

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ...+....++||-+|.+ +|..++++|..+. -.+++.+++++++.+.+++    .|.+..+.... . .+..+.+.+..
T Consensus        53 ~L~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~-~-gdal~~l~~~~  129 (219)
T COG4122          53 LLARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL-G-GDALDVLSRLL  129 (219)
T ss_pred             HHHHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe-c-CcHHHHHHhcc
Confidence            34555678999999975 4888889998776 3389999999999887754    67554222111 0 14555555533


Q ss_pred             CCCCCEEE-EecC--ChhhHHHHHHhhhcCCceEEEecc
Q 025101          140 DGGADYCF-ECVG--LASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       140 ~~~~d~v~-d~~g--~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      .+.||.|| |+--  .+..++.+++.++++ |.++.=..
T Consensus       130 ~~~fDliFIDadK~~yp~~le~~~~lLr~G-Gliv~DNv  167 (219)
T COG4122         130 DGSFDLVFIDADKADYPEYLERALPLLRPG-GLIVADNV  167 (219)
T ss_pred             CCCccEEEEeCChhhCHHHHHHHHHHhCCC-cEEEEeec
Confidence            34899998 6553  355699999999998 98875543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.65  E-value=0.00016  Score=50.10  Aligned_cols=92  Identities=24%  Similarity=0.331  Sum_probs=62.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHh-c---CC-ceE-EcCCCCCCccHHHHHHHhcCCCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKR-F---GV-TEF-VNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~-~g~~~v~~~~~~~~~~~~~~~-~---g~-~~v-i~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      ||.+||-+|+|. |..++.+++. .++ +|++++.+++..+.+++ .   +. +++ +-..     ++ . ......++|
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-----d~-~-~~~~~~~~~   71 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQG-----DA-E-FDPDFLEPF   71 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEES-----CC-H-GGTTTSSCE
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC-----cc-c-cCcccCCCC
Confidence            688999999975 8888888884 677 99999999998888765 2   22 222 2222     22 1 111112279


Q ss_pred             CEEEEec-CC---h------hhHHHHHHhhhcCCceEEE
Q 025101          144 DYCFECV-GL---A------SLVQEAYACCRKGWGKTIV  172 (258)
Q Consensus       144 d~v~d~~-g~---~------~~~~~~~~~l~~~~G~~v~  172 (258)
                      |+|+... ..   .      ..++.+.+.|+|+ |+++.
T Consensus        72 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~lvi  109 (112)
T PF12847_consen   72 DLVICSGFTLHFLLPLDERRRVLERIRRLLKPG-GRLVI  109 (112)
T ss_dssp             EEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             CEEEECCCccccccchhHHHHHHHHHHHhcCCC-cEEEE
Confidence            9999766 21   1      1377889999999 99875

...

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.64  E-value=0.00051  Score=53.24  Aligned_cols=100  Identities=14%  Similarity=0.160  Sum_probs=67.0

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  135 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i  135 (258)
                      .+...++++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .+..   .++..+      ..+.+
T Consensus        65 ~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d------~~~~~  137 (205)
T PRK13944         65 CELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD------GKRGL  137 (205)
T ss_pred             HHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC------cccCC
Confidence            4566788999999999874 878888887764 2289999999887666543    4432   222221      11111


Q ss_pred             HHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEe
Q 025101          136 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      ..  .+.||.|+-+.......+...+.|+++ |+++..
T Consensus       138 ~~--~~~fD~Ii~~~~~~~~~~~l~~~L~~g-G~lvi~  172 (205)
T PRK13944        138 EK--HAPFDAIIVTAAASTIPSALVRQLKDG-GVLVIP  172 (205)
T ss_pred             cc--CCCccEEEEccCcchhhHHHHHhcCcC-cEEEEE
Confidence            11  127999996665555467788999999 998764

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.63  E-value=0.00084  Score=50.80  Aligned_cols=89  Identities=30%  Similarity=0.391  Sum_probs=62.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -.|.+|.|+|.|.+|+.++++++.+|. +|++.+++....+.....+.. .        .++.+.+.     ..|+|+.+
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~-~--------~~l~ell~-----~aDiv~~~   98 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVE-Y--------VSLDELLA-----QADIVSLH   98 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEE-E--------SSHHHHHH-----H-SEEEE-
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcccccce-e--------eehhhhcc-----hhhhhhhh
Confidence            368999999999999999999999999 999999998776645555541 1        23444343     48999987


Q ss_pred             cCC-hh----hHHHHHHhhhcCCceEEEec
Q 025101          150 VGL-AS----LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       150 ~g~-~~----~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ... +.    .-...+..++++ ..+|.++
T Consensus        99 ~plt~~T~~li~~~~l~~mk~g-a~lvN~a  127 (178)
T PF02826_consen   99 LPLTPETRGLINAEFLAKMKPG-AVLVNVA  127 (178)
T ss_dssp             SSSSTTTTTSBSHHHHHTSTTT-EEEEESS
T ss_pred             hccccccceeeeeeeeeccccc-eEEEecc
Confidence            763 21    123667778887 7777665

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.59  E-value=0.00057  Score=53.26  Aligned_cols=99  Identities=17%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCce--EEcCCCCCCccHHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIII  136 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~  136 (258)
                      .....+++|++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++    .|..+  ++..+-      ..   
T Consensus        69 ~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~------~~---  138 (212)
T PRK13942         69 CELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG------TL---  138 (212)
T ss_pred             HHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc------cc---
Confidence            4567789999999999874 7788888887653 389999999988776654    44332  222211      00   


Q ss_pred             HhcC-CCCCEEEEecCChhhHHHHHHhhhcCCceEEEe
Q 025101          137 DMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       137 ~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      .... +.||+|+-+...........+.|+++ |+++..
T Consensus       139 ~~~~~~~fD~I~~~~~~~~~~~~l~~~Lkpg-G~lvi~  175 (212)
T PRK13942        139 GYEENAPYDRIYVTAAGPDIPKPLIEQLKDG-GIMVIP  175 (212)
T ss_pred             CCCcCCCcCEEEECCCcccchHHHHHhhCCC-cEEEEE
Confidence            1112 27999986555555567888999999 998764

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.00061  Score=53.40  Aligned_cols=103  Identities=21%  Similarity=0.269  Sum_probs=75.3

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHh
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ....++.+|++|+-.|.|+ |.++..|++..|. .+|+..+..++..+.+++    +|....+....   .|..+    .
T Consensus        87 ~~~~gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~---~Dv~~----~  158 (256)
T COG2519          87 VARLGISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL---GDVRE----G  158 (256)
T ss_pred             HHHcCCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe---ccccc----c
Confidence            4567889999999998874 8899999997764 599999999988887754    45333222222   22222    2


Q ss_pred             cCC-CCCEEE-EecCChhhHHHHHHhhhcCCceEEEecc
Q 025101          139 TDG-GADYCF-ECVGLASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       139 ~~~-~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ..+ .+|.|| |.--....++.+.+.|.|+ |.++.+..
T Consensus       159 ~~~~~vDav~LDmp~PW~~le~~~~~Lkpg-g~~~~y~P  196 (256)
T COG2519         159 IDEEDVDAVFLDLPDPWNVLEHVSDALKPG-GVVVVYSP  196 (256)
T ss_pred             ccccccCEEEEcCCChHHHHHHHHHHhCCC-cEEEEEcC
Confidence            222 799987 7776777899999999999 99998863

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.58  E-value=0.00014  Score=56.35  Aligned_cols=110  Identities=20%  Similarity=0.269  Sum_probs=70.0

Q ss_pred             cchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHH----hcCCceE-EcCCC
Q 025101           52 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGK----RFGVTEF-VNSKN  125 (258)
Q Consensus        52 ~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~----~~g~~~v-i~~~~  125 (258)
                      +..+...|.  +.+...+++|++||-+|+|. |..++-+++..|.. +|+.+++.++-.+.++    ++|.+++ +...+
T Consensus        55 is~P~~~a~--~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd  131 (209)
T PF01135_consen   55 ISAPSMVAR--MLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD  131 (209)
T ss_dssp             E--HHHHHH--HHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred             chHHHHHHH--HHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence            333444443  34677899999999999974 88888888887743 6899998887555543    4565432 22212


Q ss_pred             CCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEe
Q 025101          126 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       126 ~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                           -.   ..+... .||.|+-+.+-+..-...++.|+++ |+++..
T Consensus       132 -----g~---~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~g-GrLV~p  171 (209)
T PF01135_consen  132 -----GS---EGWPEEAPFDRIIVTAAVPEIPEALLEQLKPG-GRLVAP  171 (209)
T ss_dssp             -----GG---GTTGGG-SEEEEEESSBBSS--HHHHHTEEEE-EEEEEE
T ss_pred             -----hh---hccccCCCcCEEEEeeccchHHHHHHHhcCCC-cEEEEE
Confidence                 11   111222 7999998877766557888999999 999874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.57  E-value=0.00044  Score=56.02  Aligned_cols=77  Identities=21%  Similarity=0.346  Sum_probs=53.9

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcC--CCCCEEEE
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADYCFE  148 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~~~d~v~d  148 (258)
                      +++||+|+ |++|..+++.+...|+ +|+++++++++.+.+...+...+ .|..+  .+++.+.+.....  +++|++|+
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~vi~   78 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVND--GAALARLAEELEAEHGGLDVLIN   78 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEEEE
Confidence            47899987 8999999999988899 89999998887776666554322 35444  1233333333322  27999999


Q ss_pred             ecCC
Q 025101          149 CVGL  152 (258)
Q Consensus       149 ~~g~  152 (258)
                      +.|.
T Consensus        79 ~ag~   82 (274)
T PRK05693         79 NAGY   82 (274)
T ss_pred             CCCC
Confidence            8873

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.55  E-value=0.0031  Score=47.71  Aligned_cols=94  Identities=18%  Similarity=0.240  Sum_probs=63.2

Q ss_pred             EEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC-
Q 025101           75 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL-  152 (258)
Q Consensus        75 vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~-  152 (258)
                      |+|+|+ |.+|..+++.+...|. +|++++|++++.+.  ..+++ ++..+-   .+. +.+.+... ++|.||.+.|. 
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~-~~~~d~---~d~-~~~~~al~-~~d~vi~~~~~~   71 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVE-IIQGDL---FDP-DSVKAALK-GADAVIHAAGPP   71 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEE-EEESCT---TCH-HHHHHHHT-TSSEEEECCHST
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccc-cceeee---hhh-hhhhhhhh-hcchhhhhhhhh
Confidence            789997 9999999999999998 99999999998777  44443 332222   222 23333333 79999999984 


Q ss_pred             ---hhhHHHHHHhhhcC-CceEEEecccC
Q 025101          153 ---ASLVQEAYACCRKG-WGKTIVLGVDQ  177 (258)
Q Consensus       153 ---~~~~~~~~~~l~~~-~G~~v~~g~~~  177 (258)
                         .......++.++.. -.+++.++...
T Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   72 PKDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             TTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             cccccccccccccccccccccceeeeccc
Confidence               22355666666544 13677766443

...

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.52  E-value=0.0015  Score=44.58  Aligned_cols=94  Identities=20%  Similarity=0.283  Sum_probs=60.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      +|.+|||+|+|.+|..-++.+...|+ +|++++...   +..+  +--... .     ..+.    +.. .++++||-++
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~--~~i~~~-~-----~~~~----~~l-~~~~lV~~at   68 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSE--GLIQLI-R-----REFE----EDL-DGADLVFAAT   68 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHH--TSCEEE-E-----SS-G----GGC-TTESEEEE-S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhh--hHHHHH-h-----hhHH----HHH-hhheEEEecC
Confidence            57899999999999999999999999 999998775   2222  211121 1     1221    111 1799999999


Q ss_pred             CChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          151 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       151 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      +.+..-+......+.. |..+.....+....+
T Consensus        69 ~d~~~n~~i~~~a~~~-~i~vn~~D~p~~~dF   99 (103)
T PF13241_consen   69 DDPELNEAIYADARAR-GILVNVVDDPELCDF   99 (103)
T ss_dssp             S-HHHHHHHHHHHHHT-TSEEEETT-CCCCSE
T ss_pred             CCHHHHHHHHHHHhhC-CEEEEECCCcCCCeE
Confidence            9988555666666667 888887765544443

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.51  E-value=0.00038  Score=52.16  Aligned_cols=105  Identities=20%  Similarity=0.200  Sum_probs=67.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCCC-C------------CccHHHHHH
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNC-G------------DKSVSQIII  136 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~-~------------~~~~~~~i~  136 (258)
                      +..+|+|+|+|.+|+-|+++++.+|+ +|++.+...++.+..+..+...+ +++.+. .            ++.....+.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            34789999999999999999999999 99999999988888888776433 221110 0            122223333


Q ss_pred             HhcCCCCCEEEEecC--C---h-hhHHHHHHhhhcCCceEEEecccCC
Q 025101          137 DMTDGGADYCFECVG--L---A-SLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g--~---~-~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      +... .+|+|+-+.-  .   + ..-...++.++++ ..++.+....+
T Consensus        98 ~~i~-~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvDis~D~g  143 (168)
T PF01262_consen   98 EFIA-PADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVDISCDQG  143 (168)
T ss_dssp             HHHH-H-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEETTGGGT
T ss_pred             HHHh-hCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEEEEecCC
Confidence            3222 4899885431  1   1 1235778888988 88888875443

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.51  E-value=0.0022  Score=45.01  Aligned_cols=100  Identities=22%  Similarity=0.328  Sum_probs=66.9

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc--eEEcCCCCCCccHHHHHHHh
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ....+.++++++-+|+|. |..+..+++..+..+|++++.++...+.+++    ++..  .++..+-   ...   ... 
T Consensus        13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~---~~~-   84 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA---PEA---LED-   84 (124)
T ss_pred             HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc---ccc---Chh-
Confidence            445667788999999976 8889999987654489999999988777643    4432  2222111   110   111 


Q ss_pred             cCCCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEe
Q 025101          139 TDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       139 ~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      ..+.+|+|+-..+.   ...++.+.+.++++ |.++.-
T Consensus        85 ~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~li~~  121 (124)
T TIGR02469        85 SLPEPDRVFIGGSGGLLQEILEAIWRRLRPG-GRIVLN  121 (124)
T ss_pred             hcCCCCEEEECCcchhHHHHHHHHHHHcCCC-CEEEEE
Confidence            11279999965433   23588899999999 998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.50  E-value=0.0012  Score=50.35  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=62.6

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      ++++.+||-+|+|. |..++.+++.....+|++++.+++..+.+++    .+.+. +....   .+..+ +..  .+.+|
T Consensus        43 l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~---~d~~~-~~~--~~~fD  114 (187)
T PRK00107         43 LPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVH---GRAEE-FGQ--EEKFD  114 (187)
T ss_pred             cCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEe---ccHhh-CCC--CCCcc
Confidence            44589999999874 6777777765543399999999987766643    55433 22222   22221 111  23799


Q ss_pred             EEEEe-cCC-hhhHHHHHHhhhcCCceEEEe
Q 025101          145 YCFEC-VGL-ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       145 ~v~d~-~g~-~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      +|+-. .+. +..+..+.+.++|+ |+++.+
T Consensus       115 lV~~~~~~~~~~~l~~~~~~LkpG-G~lv~~  144 (187)
T PRK00107        115 VVTSRAVASLSDLVELCLPLLKPG-GRFLAL  144 (187)
T ss_pred             EEEEccccCHHHHHHHHHHhcCCC-eEEEEE
Confidence            99953 332 34577889999999 999877

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.50  E-value=0.0011  Score=53.34  Aligned_cols=105  Identities=20%  Similarity=0.354  Sum_probs=76.1

Q ss_pred             hhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eE--EcCCCCCCc
Q 025101           59 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EF--VNSKNCGDK  129 (258)
Q Consensus        59 a~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v--i~~~~~~~~  129 (258)
                      ++..+.+.+++++|++||=+|+|- |.+++.+|+..|. +|++++-|++..+.+++    .|..   .+  -|+++    
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd----  133 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD----  133 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc----
Confidence            444456889999999999999986 8888999999899 99999999998877654    5533   12  12222    


Q ss_pred             cHHHHHHHhcCCCCCEEE-----EecCC---hhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          130 SVSQIIIDMTDGGADYCF-----ECVGL---ASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       130 ~~~~~i~~~~~~~~d~v~-----d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                              .. +.||.|+     +.+|.   +.-+..+.+.|+|+ |++++-......
T Consensus       134 --------~~-e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~-G~~llh~I~~~~  181 (283)
T COG2230         134 --------FE-EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG-GRMLLHSITGPD  181 (283)
T ss_pred             --------cc-cccceeeehhhHHHhCcccHHHHHHHHHhhcCCC-ceEEEEEecCCC
Confidence                    11 1477775     35554   34478889999999 999877755544

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.00055  Score=57.13  Aligned_cols=78  Identities=24%  Similarity=0.323  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCccHHHHHH-Hhc--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIII-DMT--  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~-~~~--  139 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.|... +  .|..+   .+..+.+. +..  
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d---~~~v~~~~~~~~~~   81 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD---ADQVKALATQAASF   81 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC---HHHHHHHHHHHHHh
Confidence            5689999997 8999999999999999 899999998876543    3345432 2  23333   33332222 211  


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                      .+++|++|++.|.
T Consensus        82 ~g~iD~lVnnAG~   94 (330)
T PRK06139         82 GGRIDVWVNNVGV   94 (330)
T ss_pred             cCCCCEEEECCCc
Confidence            1379999999874

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.49  E-value=0.00085  Score=54.27  Aligned_cols=99  Identities=19%  Similarity=0.284  Sum_probs=61.6

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc--eEEcCCCCCCccHHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT--EFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~--~vi~~~~~~~~~~~~~i~  136 (258)
                      +.+.+++++|++||-+|+| -|..+..+++..|+ +|++++.|++..++++    +.|..  ..+...     ++    +
T Consensus        54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~-----D~----~  122 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQ-----DY----R  122 (273)
T ss_dssp             HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES------G----G
T ss_pred             HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEe-----ec----c
Confidence            4578899999999999997 47788889988899 9999999999888764    35532  112111     11    1


Q ss_pred             HhcCCCCCEEEE-----ecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          137 DMTDGGADYCFE-----CVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       137 ~~~~~~~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.. +.||.|+.     .+|.   +.-+..+.+.|+|+ |++++-.
T Consensus       123 ~~~-~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~lq~  166 (273)
T PF02353_consen  123 DLP-GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG-GRLVLQT  166 (273)
T ss_dssp             G----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT-EEEEEEE
T ss_pred             ccC-CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC-cEEEEEe
Confidence            221 17999865     4443   23478889999999 9987543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.00097  Score=52.35  Aligned_cols=76  Identities=12%  Similarity=0.148  Sum_probs=51.7

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce--EEcCCCCCCccHHHHHHH-hcCCCCCEEEE
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSVSQIIID-MTDGGADYCFE  148 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~~~i~~-~~~~~~d~v~d  148 (258)
                      ++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+++++...  ..|-.+   .+..+.+.+ +..+++|++|.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d---~~~~~~~~~~~~~~~id~vi~   77 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMND---PASLDQLLQRLQGQRFDLLFV   77 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCC---HHHHHHHHHHhhcCCCCEEEE
Confidence            47899986 9999999888888899 9999999988776665544222  233333   333333333 33337999998


Q ss_pred             ecCC
Q 025101          149 CVGL  152 (258)
Q Consensus       149 ~~g~  152 (258)
                      +.|.
T Consensus        78 ~ag~   81 (225)
T PRK08177         78 NAGI   81 (225)
T ss_pred             cCcc
Confidence            7754

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.47  E-value=0.0023  Score=56.61  Aligned_cols=105  Identities=12%  Similarity=0.109  Sum_probs=66.4

Q ss_pred             hhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---------cCC-----ceE--EcCCCCC
Q 025101           65 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---------FGV-----TEF--VNSKNCG  127 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~---------~g~-----~~v--i~~~~~~  127 (258)
                      ...+.+.|+++||+|+ |.+|..+++.+...|+ +|++++|+.++.+.+.+         .|.     ..+  .|..+  
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD--  149 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK--  149 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC--
Confidence            3455678999999987 9999999998888899 89999999887654321         121     012  23322  


Q ss_pred             CccHHHHHHHhcCCCCCEEEEecCChh---------------hHHHHHHhhhcC-CceEEEecccC
Q 025101          128 DKSVSQIIIDMTDGGADYCFECVGLAS---------------LVQEAYACCRKG-WGKTIVLGVDQ  177 (258)
Q Consensus       128 ~~~~~~~i~~~~~~~~d~v~d~~g~~~---------------~~~~~~~~l~~~-~G~~v~~g~~~  177 (258)
                       .   +.+.+..+ ++|+||.+.|...               ....+++.+... .++||.++...
T Consensus       150 -~---esI~~aLg-giDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig  210 (576)
T PLN03209        150 -P---DQIGPALG-NASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG  210 (576)
T ss_pred             -H---HHHHHHhc-CCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence             2   22333332 6999999987531               122334444332 26899888654

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.47  E-value=0.00074  Score=59.47  Aligned_cols=75  Identities=23%  Similarity=0.236  Sum_probs=55.7

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      .+.+|++|+|+|.|.+|++++++++..|+ +|++.+..+++.+.++++|+. ++....     ..+.+.     .+|+|+
T Consensus         8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~-~~~~~~-----~~~~l~-----~~D~VV   75 (488)
T PRK03369          8 PLLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVA-TVSTSD-----AVQQIA-----DYALVV   75 (488)
T ss_pred             cccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCE-EEcCcc-----hHhHhh-----cCCEEE
Confidence            35578999999999999999999999999 899999776666667778874 332221     112221     589999


Q ss_pred             EecCChh
Q 025101          148 ECVGLAS  154 (258)
Q Consensus       148 d~~g~~~  154 (258)
                      .+.|-+.
T Consensus        76 ~SpGi~~   82 (488)
T PRK03369         76 TSPGFRP   82 (488)
T ss_pred             ECCCCCC
Confidence            9888643

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.0028  Score=53.04  Aligned_cols=78  Identities=19%  Similarity=0.155  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce---EEcCCCCCCccHHHHH-HHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE---FVNSKNCGDKSVSQII-IDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~~i-~~~~~-  140 (258)
                      ++++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.|...   ..|..+   .+-.+.+ ..... 
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d---~~~v~~~~~~~~~~   82 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD---AEAVQAAADRAEEE   82 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC---HHHHHHHHHHHHHH
Confidence            4679999987 8999999998888999 899999988776543    3345432   124333   3322222 22211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +.+|++|++.|.
T Consensus        83 ~g~iD~lInnAg~   95 (334)
T PRK07109         83 LGPIDTWVNNAMV   95 (334)
T ss_pred             CCCCCEEEECCCc
Confidence             379999998874

>PRK06182 short chain dehydrogenase; Validated

Probab=97.45  E-value=0.00083  Score=54.41  Aligned_cols=79  Identities=19%  Similarity=0.258  Sum_probs=54.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce-EEcCCCCCCccHHHHHHHhc--CCCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMT--DGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~--~~~~d~v  146 (258)
                      ++++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+.+.+... ..|..+  .+++.+.+.+..  .+++|++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~~~id~l   78 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTD--EASIKAAVDTIIAEEGRIDVL   78 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEE
Confidence            3678999987 8999999999888899 9999999988776655545432 234443  123333333322  2379999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |++.|.
T Consensus        79 i~~ag~   84 (273)
T PRK06182         79 VNNAGY   84 (273)
T ss_pred             EECCCc
Confidence            998874

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.44  E-value=0.0021  Score=47.96  Aligned_cols=98  Identities=19%  Similarity=0.229  Sum_probs=64.7

Q ss_pred             hhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCH-HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCC
Q 025101           49 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  127 (258)
Q Consensus        49 aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~-~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~  127 (258)
                      ....|+....+...+.+...--.|.+|+|+|+|. +|..++..++..|+ +|+++.++.                     
T Consensus        21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~---------------------   78 (168)
T cd01080          21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT---------------------   78 (168)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc---------------------
Confidence            3445554444444333333345789999999986 59989999999999 788777542                     


Q ss_pred             CccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          128 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       128 ~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                       +++.+.+.     .+|+||.+++.+..+..  ..++++ -.++.++...
T Consensus        79 -~~l~~~l~-----~aDiVIsat~~~~ii~~--~~~~~~-~viIDla~pr  119 (168)
T cd01080          79 -KNLKEHTK-----QADIVIVAVGKPGLVKG--DMVKPG-AVVIDVGINR  119 (168)
T ss_pred             -hhHHHHHh-----hCCEEEEcCCCCceecH--HHccCC-eEEEEccCCC
Confidence             12333332     59999999998774333  346666 6777777543

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK12742 oxidoreductase; Provisional

Probab=97.44  E-value=0.0037  Score=49.33  Aligned_cols=77  Identities=21%  Similarity=0.264  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH-HhcCCceE-EcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG-KRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~~-~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+.+.+ ++++.+.+ .+.+...+ .|..+  .+.+.+.+.+ . +++|++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~--~~~~~~~~~~-~-~~id~l   79 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSAD--RDAVIDVVRK-S-GALDIL   79 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCC--HHHHHHHHHH-h-CCCcEE
Confidence            4789999987 8999999999998999 7877654 44444433 44554322 23322  1222233322 1 369999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |++.|.
T Consensus        80 i~~ag~   85 (237)
T PRK12742         80 VVNAGI   85 (237)
T ss_pred             EECCCC
Confidence            998874

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.44  E-value=0.0025  Score=51.69  Aligned_cols=99  Identities=24%  Similarity=0.362  Sum_probs=65.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      +++|+++|=.|+|+ |.+++..++ +|+.+|++++.++...+.+++    .+....+ ...     ..........+.+|
T Consensus       160 ~~~g~~vlDvGcGS-GILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~-~~~-----~~~~~~~~~~~~~D  231 (300)
T COG2264         160 LKKGKTVLDVGCGS-GILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVELLV-QAK-----GFLLLEVPENGPFD  231 (300)
T ss_pred             hcCCCEEEEecCCh-hHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCchhh-hcc-----cccchhhcccCccc
Confidence            46899999999974 778877776 588789999999877766654    3443211 111     00011112223799


Q ss_pred             EEEEecCCh---hhHHHHHHhhhcCCceEEEeccc
Q 025101          145 YCFECVGLA---SLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       145 ~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      +|+-++=..   ...+.....++|+ |.+++.|..
T Consensus       232 vIVANILA~vl~~La~~~~~~lkpg-g~lIlSGIl  265 (300)
T COG2264         232 VIVANILAEVLVELAPDIKRLLKPG-GRLILSGIL  265 (300)
T ss_pred             EEEehhhHHHHHHHHHHHHHHcCCC-ceEEEEeeh
Confidence            999766432   2356788889999 999999854

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.40  E-value=0.003  Score=46.67  Aligned_cols=82  Identities=20%  Similarity=0.188  Sum_probs=55.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|+|.|+|.+|..-++.+...|+ +|++++  ++..+.+++++.-. +..+.+...+       +  .++|+||-++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~-~~~~~~~~~d-------l--~~a~lViaaT   78 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYIT-WKQKTFSNDD-------I--KDAHLIYAAT   78 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcE-EEecccChhc-------C--CCceEEEECC
Confidence            68999999999999998888888899 888874  44444455554211 2222210011       1  1799999999


Q ss_pred             CChhhHHHHHHhhhcC
Q 025101          151 GLASLVQEAYACCRKG  166 (258)
Q Consensus       151 g~~~~~~~~~~~l~~~  166 (258)
                      ++.. ++..+...+..
T Consensus        79 ~d~e-~N~~i~~~a~~   93 (157)
T PRK06719         79 NQHA-VNMMVKQAAHD   93 (157)
T ss_pred             CCHH-HHHHHHHHHHH
Confidence            9988 66666665544

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.40  E-value=0.0011  Score=56.72  Aligned_cols=75  Identities=19%  Similarity=0.173  Sum_probs=54.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      -++.+++|+|+|.+|.+++..+...|+.+++++.|+.++.+.+ .+++...++...     ++.+.+    . .+|+||+
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~-----~l~~~l----~-~aDiVI~  248 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLS-----ELPQLI----K-KADIIIA  248 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHH-----HHHHHh----c-cCCEEEE
Confidence            4678999999999999999999999987899999998775544 456522233221     122222    1 5999999


Q ss_pred             ecCChh
Q 025101          149 CVGLAS  154 (258)
Q Consensus       149 ~~g~~~  154 (258)
                      |++.+.
T Consensus       249 aT~a~~  254 (414)
T PRK13940        249 AVNVLE  254 (414)
T ss_pred             CcCCCC
Confidence            999876

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0034  Score=49.91  Aligned_cols=78  Identities=22%  Similarity=0.265  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce-E--EcCCCCCCccHHH---HHHHhcCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSVSQ---IIIDMTDGG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v--i~~~~~~~~~~~~---~i~~~~~~~  142 (258)
                      ++++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++... .  .|..+  .++...   .+.+.. ++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~-~~   80 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGD--VAAQKALAQALAEAF-GR   80 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHHh-CC
Confidence            4679999987 8999999999988999 899999887665443 4455432 2  23222  122222   222222 36


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|.+.|.
T Consensus        81 id~vi~~ag~   90 (249)
T PRK06500         81 LDAVFINAGV   90 (249)
T ss_pred             CCEEEECCCC
Confidence            9999998874

>PRK08017 oxidoreductase; Provisional

Probab=97.38  E-value=0.00076  Score=53.95  Aligned_cols=77  Identities=23%  Similarity=0.325  Sum_probs=54.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccH---HHHHHHhcCCCCCEEE
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSV---SQIIIDMTDGGADYCF  147 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~---~~~i~~~~~~~~d~v~  147 (258)
                      ++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+++.++..+ .|..+  .+++   .+.+.....+.+|.++
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~~~~~ii   79 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDD--PESVERAADEVIALTDNRLYGLF   79 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCC--HHHHHHHHHHHHHhcCCCCeEEE
Confidence            57999997 9999999999998899 89999999988887777775432 34333  1122   2233333334788888


Q ss_pred             EecCC
Q 025101          148 ECVGL  152 (258)
Q Consensus       148 d~~g~  152 (258)
                      .+.|.
T Consensus        80 ~~ag~   84 (256)
T PRK08017         80 NNAGF   84 (256)
T ss_pred             ECCCC
Confidence            87763

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.38  E-value=0.0017  Score=51.40  Aligned_cols=105  Identities=15%  Similarity=0.211  Sum_probs=69.1

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ...+..++++||-+|+| +|..++.+++.++ ..+|+.++.+++..+.+++    .|...-+....   .+..+.+.++.
T Consensus        62 ~l~~~~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~---gda~~~L~~l~  137 (234)
T PLN02781         62 MLVKIMNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ---SDALSALDQLL  137 (234)
T ss_pred             HHHHHhCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---ccHHHHHHHHH
Confidence            34556678899999986 3777777887653 3499999999988877654    45432222222   34444444442


Q ss_pred             ----CCCCCEEE-Eec--CChhhHHHHHHhhhcCCceEEEec
Q 025101          140 ----DGGADYCF-ECV--GLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ----~~~~d~v~-d~~--g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                          .+.||+|| |+-  .....++.+++.++++ |.++.-.
T Consensus       138 ~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G-G~ii~dn  178 (234)
T PLN02781        138 NNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG-GIIAFDN  178 (234)
T ss_pred             hCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-eEEEEEc
Confidence                23799998 442  2244578889999999 9877543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.37  E-value=0.00046  Score=54.68  Aligned_cols=106  Identities=18%  Similarity=0.252  Sum_probs=68.3

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCc-e-EEcCCCCCCccHHH-H
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVT-E-FVNSKNCGDKSVSQ-I  134 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~-~-vi~~~~~~~~~~~~-~  134 (258)
                      +....++.+|++|+-.|.|+ |.+...+++..| -.+|+..+..+++.+.+++    .|.. . .+..++     +.+ .
T Consensus        32 I~~~l~i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~D-----v~~~g  105 (247)
T PF08704_consen   32 ILMRLDIRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRD-----VCEEG  105 (247)
T ss_dssp             HHHHTT--TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES------GGCG-
T ss_pred             HHHHcCCCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecc-----eeccc
Confidence            44678899999999998764 778888888765 3399999999998877654    5543 2 232222     211 1


Q ss_pred             HHHhcCCCCCEEE-EecCChhhHHHHHHhh-hcCCceEEEecc
Q 025101          135 IIDMTDGGADYCF-ECVGLASLVQEAYACC-RKGWGKTIVLGV  175 (258)
Q Consensus       135 i~~~~~~~~d~v~-d~~g~~~~~~~~~~~l-~~~~G~~v~~g~  175 (258)
                      ..+.....+|.|| |--.....+..+.+.| +++ |+++.+..
T Consensus       106 ~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~g-G~i~~fsP  147 (247)
T PF08704_consen  106 FDEELESDFDAVFLDLPDPWEAIPHAKRALKKPG-GRICCFSP  147 (247)
T ss_dssp             -STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEE-EEEEEEES
T ss_pred             ccccccCcccEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECC
Confidence            1111122689987 7666666799999999 888 99988863

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.37  E-value=0.0036  Score=50.33  Aligned_cols=79  Identities=22%  Similarity=0.306  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc-eE--EcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      ++++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++.. .+  .|..+  .+++.+.+.+...  +.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i   81 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITD--DAAIERAVATVVARFGRV   81 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4689999987 8999999999888999 999999988765544 444532 12  23333  1223333333221  269


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|.+.|.
T Consensus        82 d~lv~~ag~   90 (261)
T PRK08265         82 DILVNLACT   90 (261)
T ss_pred             CEEEECCCC
Confidence            999998774

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.37  E-value=0.001  Score=53.67  Aligned_cols=99  Identities=18%  Similarity=0.197  Sum_probs=72.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec-
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV-  150 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~-  150 (258)
                      ...|.|+|.|.+|.-++.+|..+|+ +|++.+.+.+|+..+..+-..++--... ++.++.+.+.     +.|++|.++ 
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~s-t~~~iee~v~-----~aDlvIgaVL  240 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYS-TPSNIEEAVK-----KADLVIGAVL  240 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEc-CHHHHHHHhh-----hccEEEEEEE
Confidence            4567888999999999999999999 9999999999999887743333211111 1134444443     589999865 


Q ss_pred             --CC---hhhHHHHHHhhhcCCceEEEecccCC
Q 025101          151 --GL---ASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       151 --g~---~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                        |.   ....++.++.++|+ +.++.+...++
T Consensus       241 IpgakaPkLvt~e~vk~MkpG-sVivDVAiDqG  272 (371)
T COG0686         241 IPGAKAPKLVTREMVKQMKPG-SVIVDVAIDQG  272 (371)
T ss_pred             ecCCCCceehhHHHHHhcCCC-cEEEEEEEcCC
Confidence              22   23467889999999 99999986554

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.37  E-value=0.0021  Score=50.23  Aligned_cols=100  Identities=18%  Similarity=0.215  Sum_probs=66.3

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCce--EEcCCCCCCccHHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIII  136 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~  136 (258)
                      .+...++++++||-+|+|. |..++.+++..+. .+|++++.+++..+.+++    +|.++  ++..      +..+...
T Consensus        70 ~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~------d~~~~~~  142 (215)
T TIGR00080        70 TELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVG------DGTQGWE  142 (215)
T ss_pred             HHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC------CcccCCc
Confidence            4566788999999999874 7777888887653 269999999887776643    45432  2211      1111110


Q ss_pred             HhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEe
Q 025101          137 DMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                        ..+.||+|+-............+.|+++ |+++..
T Consensus       143 --~~~~fD~Ii~~~~~~~~~~~~~~~L~~g-G~lv~~  176 (215)
T TIGR00080       143 --PLAPYDRIYVTAAGPKIPEALIDQLKEG-GILVMP  176 (215)
T ss_pred             --ccCCCCEEEEcCCcccccHHHHHhcCcC-cEEEEE
Confidence              1127999885544444466788999999 998754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.36  E-value=0.0018  Score=50.46  Aligned_cols=96  Identities=19%  Similarity=0.248  Sum_probs=66.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--eEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      -+|.+||=+|+|+ |++...+|+ .|+ +|+++|-+++..+.++.....  .-+|+..    ...+.+... ++.||+|+
T Consensus        58 l~g~~vLDvGCGg-G~Lse~mAr-~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~----~~~edl~~~-~~~FDvV~  129 (243)
T COG2227          58 LPGLRVLDVGCGG-GILSEPLAR-LGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQ----ATVEDLASA-GGQFDVVT  129 (243)
T ss_pred             CCCCeEEEecCCc-cHhhHHHHH-CCC-eeEEecCChHHHHHHHHhhhhccccccchh----hhHHHHHhc-CCCccEEE
Confidence            4789999999975 777777776 588 999999999999888753221  1255654    222223222 14899987


Q ss_pred             E-----ecCChh-hHHHHHHhhhcCCceEEEec
Q 025101          148 E-----CVGLAS-LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       148 d-----~~g~~~-~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .     -+..+. .+..+...++|+ |.++...
T Consensus       130 cmEVlEHv~dp~~~~~~c~~lvkP~-G~lf~ST  161 (243)
T COG2227         130 CMEVLEHVPDPESFLRACAKLVKPG-GILFLST  161 (243)
T ss_pred             EhhHHHccCCHHHHHHHHHHHcCCC-cEEEEec
Confidence            4     455544 466888999999 9887554

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.0045  Score=49.24  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=60.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcc-hHHH----HHhcCCc-eE--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFEI----GKRFGVT-EF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~-~~~~----~~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++||+|+ |.+|..++..+...|+ +|+++.++.+ +.+.    ++..+.. ..  .|..+  .+++...+.+... 
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   81 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD--EESVAALMDTAREE   81 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHh
Confidence            4679999987 8999999998888899 8988887653 2322    2223322 11  23333  1223223332222 


Q ss_pred             -CCCCEEEEecCCh-------------------hhHHHHHHhhhcCCceEEEecc
Q 025101          141 -GGADYCFECVGLA-------------------SLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       141 -~~~d~v~d~~g~~-------------------~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                       +++|+++.+.|..                   ..++.+...+... |+++.++.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS  135 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTS  135 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeC
Confidence             2689999877542                   1234444445556 88888865

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.36  E-value=0.0019  Score=53.44  Aligned_cols=91  Identities=25%  Similarity=0.416  Sum_probs=61.8

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      .+|.|+|+|.+|.+.+..++..|. .+|+++++++++.+.+++.|....+.      .+..+.+     ...|+||.|+.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~------~~~~~~~-----~~aDvViiavp   75 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT------TSAAEAV-----KGADLVILCVP   75 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec------CCHHHHh-----cCCCEEEECCC
Confidence            679999999999999998888774 37999999999888888887532111      1111112     16899999998


Q ss_pred             Chhh---HHHHHHhhhcCCceEEEecc
Q 025101          152 LASL---VQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       152 ~~~~---~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ....   +......++++ ..++.+|.
T Consensus        76 ~~~~~~v~~~l~~~l~~~-~iv~dvgs  101 (307)
T PRK07502         76 VGASGAVAAEIAPHLKPG-AIVTDVGS  101 (307)
T ss_pred             HHHHHHHHHHHHhhCCCC-CEEEeCcc
Confidence            6542   23333445565 66666653

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.36  E-value=0.0012  Score=50.88  Aligned_cols=93  Identities=17%  Similarity=0.015  Sum_probs=57.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~-~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      .|.+|||+|+|.+|...++.+...|+ +|++++....+ ...+.+.+. ..+..+.     +.+.  .+  .++|+||-+
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~~~-i~~~~~~-----~~~~--~l--~~adlViaa   77 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEEGK-IRWKQKE-----FEPS--DI--VDAFLVIAA   77 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhCCC-EEEEecC-----CChh--hc--CCceEEEEc
Confidence            57899999999999999888888898 88888654321 122212221 1122222     1100  01  169999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ++++. ++..+...... +.++.....
T Consensus        78 T~d~e-lN~~i~~~a~~-~~lvn~~d~  102 (202)
T PRK06718         78 TNDPR-VNEQVKEDLPE-NALFNVITD  102 (202)
T ss_pred             CCCHH-HHHHHHHHHHh-CCcEEECCC
Confidence            99988 66655555555 656555443

>PRK00536 speE spermidine synthase; Provisional

Probab=97.35  E-value=0.00084  Score=53.67  Aligned_cols=98  Identities=12%  Similarity=-0.040  Sum_probs=67.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCC-ceEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV-TEFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~-~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      ...++|||+|+|- |.++-+++|+- - +|+.++-+++-.+.+++ ++. ...++..+   -++...+.+...+.||+||
T Consensus        71 ~~pk~VLIiGGGD-Gg~~REvLkh~-~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpR---v~l~~~~~~~~~~~fDVII  144 (262)
T PRK00536         71 KELKEVLIVDGFD-LELAHQLFKYD-T-HVDFVQADEKILDSFISFFPHFHEVKNNKN---FTHAKQLLDLDIKKYDLII  144 (262)
T ss_pred             CCCCeEEEEcCCc-hHHHHHHHCcC-C-eeEEEECCHHHHHHHHHHCHHHHHhhcCCC---EEEeehhhhccCCcCCEEE
Confidence            3458999998765 66778888875 3 89999999988899888 331 11233333   2222234443334799988


Q ss_pred             -EecCChhhHHHHHHhhhcCCceEEEec
Q 025101          148 -ECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       148 -d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                       |++-.+.-.+.+.+.|+++ |.++.=+
T Consensus       145 vDs~~~~~fy~~~~~~L~~~-Gi~v~Qs  171 (262)
T PRK00536        145 CLQEPDIHKIDGLKRMLKED-GVFISVA  171 (262)
T ss_pred             EcCCCChHHHHHHHHhcCCC-cEEEECC
Confidence             7676666577899999999 9887543

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0039  Score=49.19  Aligned_cols=79  Identities=19%  Similarity=0.264  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC---ceEE--cCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV---TEFV--NSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~---~~vi--~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      ++.+++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +++..   -+++  |..+  .+++.+.+.+...  +
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRD--EADVQRAVDAIVAAFG   81 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC--HHHHHHHHHHHHHHcC
Confidence            4689999987 8999999888887899 899999988766543 33321   1222  3322  1233333333221  2


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|++|.+.|.
T Consensus        82 ~~d~vi~~ag~   92 (237)
T PRK07326         82 GLDVLIANAGV   92 (237)
T ss_pred             CCCEEEECCCC
Confidence            69999998764

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0013  Score=52.58  Aligned_cols=80  Identities=15%  Similarity=0.227  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-ceE--EcCCCCCCccHHHHHHHhc--
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEF--VNSKNCGDKSVSQIIIDMT--  139 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v--i~~~~~~~~~~~~~i~~~~--  139 (258)
                      -.+++++|+|+ |.+|..++..+...|+ +|+++++++++.+.+.+    .+. ..+  .|..+  .+++.+.+.+..  
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   83 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD--YQSIKAAVAHAETE   83 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHh
Confidence            35789999986 9999999999988999 89999998877654432    221 122  23322  123333333321  


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                      .+.+|++|.+.|.
T Consensus        84 ~~~~d~li~~ag~   96 (258)
T PRK06949         84 AGTIDILVNNSGV   96 (258)
T ss_pred             cCCCCEEEECCCC
Confidence            1379999998873

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0013  Score=52.73  Aligned_cols=79  Identities=24%  Similarity=0.323  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce-EEcCCCCCCccHHHHHHHhcC--CCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~~~d~  145 (258)
                      +|++++|+|+ |++|..+++.+...|+ +|+++++++.+.+.. .+++... ..|..+  .+++.+.+.+...  +++|+
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTD--EDAVNALFDTAAETYGSVDI   82 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            5789999997 8999999999988999 899999887766544 3444321 224333  1222222222211  26899


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      +|.+.|.
T Consensus        83 vi~~ag~   89 (255)
T PRK06057         83 AFNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998763

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=97.33  E-value=0.0056  Score=48.21  Aligned_cols=107  Identities=21%  Similarity=0.346  Sum_probs=73.9

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      .......+|++||=.|+| +|-.+..+++..|..+|+++|.|++.++.+++    .|... +..-.   .+. +.+. ..
T Consensus        44 i~~~~~~~g~~vLDva~G-TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~---~dA-e~LP-f~  116 (238)
T COG2226          44 ISLLGIKPGDKVLDVACG-TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVV---GDA-ENLP-FP  116 (238)
T ss_pred             HHhhCCCCCCEEEEecCC-ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEE---ech-hhCC-CC
Confidence            344556689999998887 49999999999986699999999999888765    23221 11111   111 1111 11


Q ss_pred             CCCCCEEEEecCC------hhhHHHHHHhhhcCCceEEEecccCC
Q 025101          140 DGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       140 ~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      +..||+|.-+.|-      +.++.++.+.++|+ |+++.+.....
T Consensus       117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg-G~~~vle~~~p  160 (238)
T COG2226         117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG-GRLLVLEFSKP  160 (238)
T ss_pred             CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC-eEEEEEEcCCC
Confidence            2278998766553      44689999999999 99988875543

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.33  E-value=0.0014  Score=54.54  Aligned_cols=80  Identities=18%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----cC-Cc---eEEcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FG-VT---EFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-----~g-~~---~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      .|++++|+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+     .+ ..   ...|..+ +..+..+.+.+..+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~l~~~~~  129 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG-DIDEGVKRIKETIE  129 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC-CcHHHHHHHHHHhc
Confidence            5899999997 8999998888877899 89999999988665422     22 11   1234332 11344455555555


Q ss_pred             C-CCCEEEEecCC
Q 025101          141 G-GADYCFECVGL  152 (258)
Q Consensus       141 ~-~~d~v~d~~g~  152 (258)
                      + ++|+++++.|.
T Consensus       130 ~~didilVnnAG~  142 (320)
T PLN02780        130 GLDVGVLINNVGV  142 (320)
T ss_pred             CCCccEEEEecCc
Confidence            5 67899998763

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.30  E-value=0.0037  Score=46.00  Aligned_cols=90  Identities=20%  Similarity=0.318  Sum_probs=58.9

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      .-.|++++|.|-|.+|.-.++.++.+|+ +|++++.++-+.-.+.--|.. +.        .+.+.+     ...|++|-
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~-v~--------~~~~a~-----~~adi~vt   84 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE-VM--------TLEEAL-----RDADIFVT   84 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E-EE---------HHHHT-----TT-SEEEE
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE-ec--------CHHHHH-----hhCCEEEE
Confidence            4578999999999999999999999999 999999998776666556653 22        122222     15899999


Q ss_pred             ecCChhhH-HHHHHhhhcCCceEEEec
Q 025101          149 CVGLASLV-QEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       149 ~~g~~~~~-~~~~~~l~~~~G~~v~~g  174 (258)
                      ++|....+ .+-+..++++ ..+..+|
T Consensus        85 aTG~~~vi~~e~~~~mkdg-ail~n~G  110 (162)
T PF00670_consen   85 ATGNKDVITGEHFRQMKDG-AILANAG  110 (162)
T ss_dssp             -SSSSSSB-HHHHHHS-TT-EEEEESS
T ss_pred             CCCCccccCHHHHHHhcCC-eEEeccC
Confidence            99987643 4677788876 5555445

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.30  E-value=0.0066  Score=45.19  Aligned_cols=89  Identities=25%  Similarity=0.223  Sum_probs=59.1

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      .+|-++|.|.+|...++-+...|+ +|++.++++++.+.+.+.|+...        .+..+.+.     ..|+||-|+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~~--------~s~~e~~~-----~~dvvi~~v~~   67 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEVA--------DSPAEAAE-----QADVVILCVPD   67 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEEE--------SSHHHHHH-----HBSEEEE-SSS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhhh--------hhhhhHhh-----cccceEeeccc
Confidence            368899999999999888888899 99999999999998888885322        22333333     36899988887


Q ss_pred             hhhHHHHH------HhhhcCCceEEEeccc
Q 025101          153 ASLVQEAY------ACCRKGWGKTIVLGVD  176 (258)
Q Consensus       153 ~~~~~~~~------~~l~~~~G~~v~~g~~  176 (258)
                      ...+...+      ..+.++ ..++.+++.
T Consensus        68 ~~~v~~v~~~~~i~~~l~~g-~iiid~sT~   96 (163)
T PF03446_consen   68 DDAVEAVLFGENILAGLRPG-KIIIDMSTI   96 (163)
T ss_dssp             HHHHHHHHHCTTHGGGS-TT-EEEEE-SS-
T ss_pred             chhhhhhhhhhHHhhccccc-eEEEecCCc
Confidence            65455443      334555 566666543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=97.30  E-value=0.0053  Score=48.24  Aligned_cols=97  Identities=19%  Similarity=0.206  Sum_probs=64.1

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eEEcCCCCCCccHHHHHHHhcC
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      ...+.++++||-.|+|. |..++.+++. |..+|++++.+++..+.+++    .+.. .+++      .++.+.+   ..
T Consensus        31 ~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~------~d~~~~~---~~   99 (223)
T PRK14967         31 AEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR------GDWARAV---EF   99 (223)
T ss_pred             hcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE------Cchhhhc---cC
Confidence            34567889999999986 8888888875 55589999999988776554    3432 2222      2232221   12


Q ss_pred             CCCCEEEEecCC---------------------------hhhHHHHHHhhhcCCceEEEec
Q 025101          141 GGADYCFECVGL---------------------------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~~~d~v~d~~g~---------------------------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.+|+|+.+.+.                           ...+..+.+.|+++ |+++++-
T Consensus       100 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~~  159 (223)
T PRK14967        100 RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLVQ  159 (223)
T ss_pred             CCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence            379999965321                           11245677889999 9988653

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=97.29  E-value=0.002  Score=51.96  Aligned_cols=78  Identities=23%  Similarity=0.333  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcc-CHHHHH-HHHHHHHcCCCeEEEEcCCcchHHHHH-----hcCCc---eEEcCCCCCCcc-HHHHHHHh
Q 025101           70 EVGSTVVIFGL-GSIGLA-VAEGARLCGATRIIGVDVISEKFEIGK-----RFGVT---EFVNSKNCGDKS-VSQIIIDM  138 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~-a~~l~~~~g~~~v~~~~~~~~~~~~~~-----~~g~~---~vi~~~~~~~~~-~~~~i~~~  138 (258)
                      +.|+|.+|+|+ .++|.+ +-++|+ .|+ +|+.+.|+.+|++.++     +.++.   .++|..+   .+ ..+.+++.
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~---~~~~ye~i~~~  121 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTK---GDEVYEKLLEK  121 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCC---CchhHHHHHHH
Confidence            35789999998 699976 556666 899 8999999999987764     34532   4678777   33 46677776


Q ss_pred             cCC-CCCEEEEecCC
Q 025101          139 TDG-GADYCFECVGL  152 (258)
Q Consensus       139 ~~~-~~d~v~d~~g~  152 (258)
                      ..+ .+-+.++++|-
T Consensus       122 l~~~~VgILVNNvG~  136 (312)
T KOG1014|consen  122 LAGLDVGILVNNVGM  136 (312)
T ss_pred             hcCCceEEEEecccc
Confidence            666 88889999884

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.29  E-value=0.0035  Score=51.11  Aligned_cols=71  Identities=20%  Similarity=0.189  Sum_probs=50.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC----CceEEcCCCCCCccHHHHHHHhcCCCCCE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG----VTEFVNSKNCGDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g----~~~vi~~~~~~~~~~~~~i~~~~~~~~d~  145 (258)
                      .+.+++|+|+|+.|.+++..+...|+++|++++|+.+|.+.+ ++++    ...+...     +++.+.+     ..+|+
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~-----~~~~~~~-----~~aDi  195 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAG-----SDLAAAL-----AAADG  195 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEec-----cchHhhh-----CCCCE
Confidence            567999999999999999999999998899999998887654 3332    1122221     1221111     16999


Q ss_pred             EEEecC
Q 025101          146 CFECVG  151 (258)
Q Consensus       146 v~d~~g  151 (258)
                      ||+|+.
T Consensus       196 VInaTp  201 (284)
T PRK12549        196 LVHATP  201 (284)
T ss_pred             EEECCc
Confidence            999964

>PRK00811 spermidine synthase; Provisional

Probab=97.29  E-value=0.002  Score=52.55  Aligned_cols=95  Identities=15%  Similarity=0.202  Sum_probs=63.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC------C--c---eEEcCCCCCCccHHHHHHHh
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG------V--T---EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g------~--~---~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ...++||++|+|. |..+..+++..+..+|++++.+++-.+.++++-      .  +   .++.      .+..+.+.. 
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~------~Da~~~l~~-  146 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI------GDGIKFVAE-  146 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE------CchHHHHhh-
Confidence            3568999999875 777888888767669999999999888887631      1  1   1111      334444443 


Q ss_pred             cCCCCCEEE-EecCC---------hhhHHHHHHhhhcCCceEEEe
Q 025101          139 TDGGADYCF-ECVGL---------ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       139 ~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      ..+.+|+|| |+...         ...++.+.+.|+++ |.++.-
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g-Gvlv~~  190 (283)
T PRK00811        147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED-GIFVAQ  190 (283)
T ss_pred             CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence            334899998 43211         22256788999999 998864

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0021  Score=51.86  Aligned_cols=79  Identities=18%  Similarity=0.294  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-c----CCc-eE--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GVT-EF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~----g~~-~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +|+++||+|+ +++|.++++.+...|+ +|+++++++++.+.+.+ +    +.. .+  .|..+  .++....+.+... 
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~   83 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK--REDLERTVKELKNI   83 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHHHHhh
Confidence            4789999987 8999999999998999 89999998877654432 2    322 12  23333  1223233332221 


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|+++.+.|.
T Consensus        84 g~iD~lv~nag~   95 (263)
T PRK08339         84 GEPDIFFFSTGG   95 (263)
T ss_pred             CCCcEEEECCCC
Confidence            379999998874

>PLN02366 spermidine synthase

Probab=97.27  E-value=0.0035  Score=51.59  Aligned_cols=103  Identities=15%  Similarity=0.148  Sum_probs=64.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CC-ceEEcCCCC--CCccHHHHHHHhcCCCCCE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV-TEFVNSKNC--GDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~-~~vi~~~~~--~~~~~~~~i~~~~~~~~d~  145 (258)
                      ...++|||+|+|. |.++..+++.-+..+|.+++.+++-.+.++++ +. ...++....  -..+..+.+++..++.+|+
T Consensus        90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            4578999999875 66777888876666899999888888887773 21 000110000  0023334444433347999


Q ss_pred             EE-EecC---------ChhhHHHHHHhhhcCCceEEEec
Q 025101          146 CF-ECVG---------LASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       146 v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      || |+..         ....++.+.+.|+|+ |.++.-+
T Consensus       169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pg-Gvlv~q~  206 (308)
T PLN02366        169 IIVDSSDPVGPAQELFEKPFFESVARALRPG-GVVCTQA  206 (308)
T ss_pred             EEEcCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEECc
Confidence            98 4432         112367888999999 9987543

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0055  Score=48.69  Aligned_cols=79  Identities=20%  Similarity=0.228  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-eE--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      ++++++|+|+ |++|+.++..+...|+ +|+++++++++.+.+    +..+.. .+  .|..+  .+++...+.+...  
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   82 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD--PASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4789999987 8999999999888999 899998887765433    223322 12  23333  1222222222211  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|++|.+.|.
T Consensus        83 ~~id~vi~~ag~   94 (250)
T PRK12939         83 GGLDGLVNNAGI   94 (250)
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>PRK06484 short chain dehydrogenase; Validated

Probab=97.26  E-value=0.005  Score=54.77  Aligned_cols=103  Identities=22%  Similarity=0.256  Sum_probs=67.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCce---EEcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE---FVNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~---vi~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      .|+++||+|+ +++|..+++.+...|+ +|+++++++++.+.+.+ ++...   ..|..+  .+++...+.+...  +.+
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITD--EAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            5789999986 8999999998888999 99999998877766544 44322   223333  1223333333221  369


Q ss_pred             CEEEEecCChh--------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          144 DYCFECVGLAS--------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       144 d~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      |++|.+.|...                          ..+.++..++.+ |+++.++...
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~iv~isS~~  403 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQG-GVIVNLGSIA  403 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccC-CEEEEECchh
Confidence            99999887410                          133444555566 8998887643

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0018  Score=52.36  Aligned_cols=78  Identities=24%  Similarity=0.272  Sum_probs=51.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC-Cce-EEcCCCCCCccHHHHHHHhcC--CCCCE
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG-VTE-FVNSKNCGDKSVSQIIIDMTD--GGADY  145 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g-~~~-vi~~~~~~~~~~~~~i~~~~~--~~~d~  145 (258)
                      +.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++ +.. ..|..+  .+++.+.+.+...  +++|+
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   81 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTD--PASFAAFLDAVEADLGPIDV   81 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            678999987 8999999988888899 899999988776544 3444 221 224333  1233222332221  37999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      ++.+.|.
T Consensus        82 li~~ag~   88 (273)
T PRK07825         82 LVNNAGV   88 (273)
T ss_pred             EEECCCc
Confidence            9998874

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.0066  Score=48.14  Aligned_cols=75  Identities=12%  Similarity=0.077  Sum_probs=47.4

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC--Cc-eEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g--~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      .+++|+|+ |++|..++..+...|+ +|+++++++++.+.+.+.+  .. ...|..+  .+++.+.+.+. ....|.++.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~-~~~~d~~i~   77 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQSANIFTLAFDVTD--HPGTKAALSQL-PFIPELWIF   77 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCCCeEEEeeCCC--HHHHHHHHHhc-ccCCCEEEE
Confidence            57899986 9999998888888899 8999999988776665433  21 1233333  12233333322 224677766


Q ss_pred             ecC
Q 025101          149 CVG  151 (258)
Q Consensus       149 ~~g  151 (258)
                      +.|
T Consensus        78 ~ag   80 (240)
T PRK06101         78 NAG   80 (240)
T ss_pred             cCc
Confidence            554

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.25  E-value=0.0046  Score=53.96  Aligned_cols=78  Identities=24%  Similarity=0.414  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch--H-HHHHhcCCce-EEcCCCCCCccHHHHHHH-hcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--F-EIGKRFGVTE-FVNSKNCGDKSVSQIIID-MTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~--~-~~~~~~g~~~-vi~~~~~~~~~~~~~i~~-~~~--~~  142 (258)
                      +|+++||+|+ |++|..+++.+...|+ +|+++++++..  . +...+++... ..|..+   .+..+.+.+ ...  ++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~---~~~~~~~~~~~~~~~g~  284 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITA---PDAPARIAEHLAERHGG  284 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHHHHHhCCC
Confidence            5789999987 9999999999988999 89988874322  2 2233455432 235444   333333322 211  26


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|.+.|.
T Consensus       285 id~vi~~AG~  294 (450)
T PRK08261        285 LDIVVHNAGI  294 (450)
T ss_pred             CCEEEECCCc
Confidence            9999999883

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.25  E-value=0.0038  Score=48.22  Aligned_cols=35  Identities=31%  Similarity=0.322  Sum_probs=31.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .+.+|+|+|+|++|..+++.+...|..++..++.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46789999999999999999999999889998866

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.003  Score=50.11  Aligned_cols=77  Identities=19%  Similarity=0.306  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCce-EEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~-vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      ++++++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+ .+... ..|..+   .+......+. .+++|++|
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~-~~~~d~vi   82 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGD---DAAIRAALAA-AGAFDGLV   82 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCC---HHHHHHHHHH-hCCCCEEE
Confidence            5689999997 8999999999999999 89999998877655433 44432 234433   3322222222 13699999


Q ss_pred             EecCC
Q 025101          148 ECVGL  152 (258)
Q Consensus       148 d~~g~  152 (258)
                      .+.|.
T Consensus        83 ~~ag~   87 (245)
T PRK07060         83 NCAGI   87 (245)
T ss_pred             ECCCC
Confidence            98874

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.24  E-value=0.0078  Score=46.26  Aligned_cols=102  Identities=21%  Similarity=0.350  Sum_probs=64.2

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCce--EEcCCCCCCccHHHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~~  137 (258)
                      .....+.++++||-+|+|. |..++.+++.....+|++++.+++..+.+++    ++...  ++.      .+..+.+..
T Consensus        33 ~~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~------~d~~~~~~~  105 (196)
T PRK07402         33 ISQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIE------GSAPECLAQ  105 (196)
T ss_pred             HHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE------CchHHHHhh
Confidence            4555778899999998863 6666777765432399999999988777654    55432  222      122222222


Q ss_pred             hcCCCCCEEE-EecCC-hhhHHHHHHhhhcCCceEEEec
Q 025101          138 MTDGGADYCF-ECVGL-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~~~d~v~-d~~g~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .. ..+|.++ +.... ...++.+.+.|+|+ |+++...
T Consensus       106 ~~-~~~d~v~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~  142 (196)
T PRK07402        106 LA-PAPDRVCIEGGRPIKEILQAVWQYLKPG-GRLVATA  142 (196)
T ss_pred             CC-CCCCEEEEECCcCHHHHHHHHHHhcCCC-eEEEEEe
Confidence            22 2345544 43222 35588899999999 9988775

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.22  E-value=0.0021  Score=51.71  Aligned_cols=79  Identities=23%  Similarity=0.259  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCc-eE--EcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      +++++||+|+ +++|..+++.+...|+ +|+++++++++.+.+.+ ++.. .+  .|..+  .+++...+.+...  +.+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   81 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTS--YADNQRAVDQTVDAFGKL   81 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC--HHHHHHHHHHHHHhcCCC
Confidence            5789999987 8999999999988999 89999998877765543 4321 12  23322  1223333333221  269


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|++.|.
T Consensus        82 d~li~~ag~   90 (263)
T PRK06200         82 DCFVGNAGI   90 (263)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0041  Score=49.85  Aligned_cols=82  Identities=23%  Similarity=0.306  Sum_probs=51.5

Q ss_pred             CCCCCCEEEEEcc-CHHHHHHHHHHHHc-CCCeEEEEcCCcch-HHH----HHhcCC-c-eEE--cCCCCCCccHHHHHH
Q 025101           68 NVEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEK-FEI----GKRFGV-T-EFV--NSKNCGDKSVSQIII  136 (258)
Q Consensus        68 ~~~~g~~vlI~G~-g~~G~~a~~l~~~~-g~~~v~~~~~~~~~-~~~----~~~~g~-~-~vi--~~~~~~~~~~~~~i~  136 (258)
                      .+..++++||+|+ |++|..+++-+... |+ +|+++++++++ .+.    +++.+. . +++  |..+  .++..+.+.
T Consensus         4 ~~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~--~~~~~~~~~   80 (253)
T PRK07904          4 AVGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD--TDSHPKVID   80 (253)
T ss_pred             ccCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC--hHHHHHHHH
Confidence            3567889999987 89999988876666 47 89999998775 332    233332 1 222  3332  123333333


Q ss_pred             HhcC-CCCCEEEEecCC
Q 025101          137 DMTD-GGADYCFECVGL  152 (258)
Q Consensus       137 ~~~~-~~~d~v~d~~g~  152 (258)
                      +... +++|+++.+.|.
T Consensus        81 ~~~~~g~id~li~~ag~   97 (253)
T PRK07904         81 AAFAGGDVDVAIVAFGL   97 (253)
T ss_pred             HHHhcCCCCEEEEeeec
Confidence            3322 479999987764

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0019  Score=51.63  Aligned_cols=79  Identities=23%  Similarity=0.268  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce--E--EcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--F--VNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~--v--i~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      +++++||+|+ |++|..+++.+...|+ +|++++++++..+...++....  .  .|..+  .+++...+.+...  +++
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~~   90 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSD--SQSVEAAVAAVISAFGRI   90 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4789999987 8999999988888999 8999998876655554433211  2  23332  1223222322221  269


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |.++.+.|.
T Consensus        91 d~vi~~ag~   99 (255)
T PRK06841         91 DILVNSAGV   99 (255)
T ss_pred             CEEEECCCC
Confidence            999998874

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.21  E-value=0.0015  Score=52.51  Aligned_cols=78  Identities=17%  Similarity=0.178  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCc-eE--EcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      ++++++|+|+ |++|..+++.+...|+ +|++++++.++.+.+++ .+.. ..  .|..+  .++..+.+.+...  +.+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS--LDDHKEAVARCVAAFGKI   80 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence            4789999987 8999999998888999 89999998877665544 3321 11  23332  1223333333222  268


Q ss_pred             CEEEEecC
Q 025101          144 DYCFECVG  151 (258)
Q Consensus       144 d~v~d~~g  151 (258)
                      |++|.+.|
T Consensus        81 d~li~~Ag   88 (262)
T TIGR03325        81 DCLIPNAG   88 (262)
T ss_pred             CEEEECCC
Confidence            99999876

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.21  E-value=0.0059  Score=50.89  Aligned_cols=97  Identities=18%  Similarity=0.106  Sum_probs=66.7

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHH-HHcCCCeEEEEcCCcchHHHH-Hh----cCCceEEcCCCCCCccHHHHHHHhcCC
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDVISEKFEIG-KR----FGVTEFVNSKNCGDKSVSQIIIDMTDG  141 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~-~~~g~~~v~~~~~~~~~~~~~-~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~  141 (258)
                      ..+..++++|+|+|..|...+..+ ...++++|.++++++++.+.+ ++    ++.. +...     ++..+.+.     
T Consensus       123 a~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~-----~~~~~~~~-----  191 (325)
T PRK08618        123 AREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVV-----NSADEAIE-----  191 (325)
T ss_pred             cCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEe-----CCHHHHHh-----
Confidence            334567899999999998766544 467888999999998886544 32    3432 2222     22333332     


Q ss_pred             CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       142 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      ..|+|+.|+++.. .... ..++++ -+++.+|....
T Consensus       192 ~aDiVi~aT~s~~-p~i~-~~l~~G-~hV~~iGs~~p  225 (325)
T PRK08618        192 EADIIVTVTNAKT-PVFS-EKLKKG-VHINAVGSFMP  225 (325)
T ss_pred             cCCEEEEccCCCC-cchH-HhcCCC-cEEEecCCCCc
Confidence            6999999998876 3334 888998 89989986543

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.0019  Score=51.87  Aligned_cols=82  Identities=23%  Similarity=0.287  Sum_probs=53.2

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCc----eEEcCCCCCCccHHHHHHHhcC--
Q 025101           69 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT----EFVNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        69 ~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~----~vi~~~~~~~~~~~~~i~~~~~--  140 (258)
                      .-++.++||+|+ |.+|..+++.+...|+ +|++++++++..+.+.+ .+-.    ...|..+  .+.+.+.+.+...  
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVAD--PAQVERVFDTAVERF   84 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            347789999987 9999999999988999 89999998776655433 2211    1223333  1222222222211  


Q ss_pred             CCCCEEEEecCCh
Q 025101          141 GGADYCFECVGLA  153 (258)
Q Consensus       141 ~~~d~v~d~~g~~  153 (258)
                      +++|.||.+.|..
T Consensus        85 ~~~d~vi~~ag~~   97 (264)
T PRK12829         85 GGLDVLVNNAGIA   97 (264)
T ss_pred             CCCCEEEECCCCC
Confidence            2799999988753

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.20  E-value=0.0039  Score=48.26  Aligned_cols=94  Identities=17%  Similarity=0.161  Sum_probs=60.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      .|.+|||+|+|.+|..-++.+...|+ +|++++.... ....+.+.|--..+. .+     +...  .+  .++++||-+
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~i~~~~-~~-----~~~~--dl--~~~~lVi~a   76 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGGITWLA-RC-----FDAD--IL--EGAFLVIAA   76 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCCEEEEe-CC-----CCHH--Hh--CCcEEEEEC
Confidence            47899999999999999999999999 8998876543 223333334212222 22     1111  11  179999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ++.+..-.......+.. |..+.+...
T Consensus        77 t~d~~ln~~i~~~a~~~-~ilvn~~d~  102 (205)
T TIGR01470        77 TDDEELNRRVAHAARAR-GVPVNVVDD  102 (205)
T ss_pred             CCCHHHHHHHHHHHHHc-CCEEEECCC
Confidence            99986344566666666 776655433

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PLN02476 O-methyltransferase

Probab=97.19  E-value=0.0035  Score=50.61  Aligned_cols=105  Identities=16%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHH----hcCCceEEcCCCCCCccHHHHHHHhc
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ...+..+.++||-+|.+ +|..++.+++.++ -.+|+.++.+++..+.++    +.|..+-+....   .+..+.+.++.
T Consensus       112 ~L~~~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~---GdA~e~L~~l~  187 (278)
T PLN02476        112 MLVQILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH---GLAAESLKSMI  187 (278)
T ss_pred             HHHHhcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHH
Confidence            34556678999999975 4777888888764 227999999998877764    466542223222   34445554431


Q ss_pred             ----CCCCCEEE-EecCC--hhhHHHHHHhhhcCCceEEEec
Q 025101          140 ----DGGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ----~~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                          .+.||.|| |+--.  ...++.+++.++++ |.++.=.
T Consensus       188 ~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G-GvIV~DN  228 (278)
T PLN02476        188 QNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG-GVIVMDN  228 (278)
T ss_pred             hcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEec
Confidence                23799998 55432  44578899999998 9876443

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.002  Score=52.87  Aligned_cols=79  Identities=20%  Similarity=0.297  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC--ce-E--EcCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--TE-F--VNSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~--~~-v--i~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      +|+++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++.  .. .  .|..+  .+++...+.+...  +
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTD--LAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC--HHHHHHHHHHHHHHcC
Confidence            5789999987 8999999999999999 899999988776544 44542  11 1  34333  1222222222221  3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|++|++.|.
T Consensus        85 ~id~vI~nAG~   95 (296)
T PRK05872         85 GIDVVVANAGI   95 (296)
T ss_pred             CCCEEEECCCc
Confidence            79999999884

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0027  Score=52.08  Aligned_cols=79  Identities=23%  Similarity=0.315  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-eE--EcCCCCCCccHHHHHHHhc--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~~i~~~~--~  140 (258)
                      .+++++|+|+ |++|..+++.+...|+ +|++++++.++.+.+.    +.+.. .+  .|..+  .+++.+.+....  -
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  115 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSD--LDAVDALVADVEKRI  115 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 8999999998888899 9999999987765442    22322 12  23322  122222222221  1


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|++|.+.|.
T Consensus       116 g~id~li~~AG~  127 (293)
T PRK05866        116 GGVDILINNAGR  127 (293)
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.17  E-value=0.0031  Score=46.39  Aligned_cols=96  Identities=22%  Similarity=0.236  Sum_probs=61.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhcCCce-EEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~-~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      .++.+++|+|+|.+|...++.+...|..+|+++++++++.+. +++++... ....     .+..+.     -.++|+|+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~Dvvi   86 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAY-----LDLEEL-----LAEADLII   86 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceee-----cchhhc-----cccCCEEE
Confidence            457899999999999999988888864489999998877654 45555421 0111     111111     12799999


Q ss_pred             EecCChhh----HHHHHHhhhcCCceEEEeccc
Q 025101          148 ECVGLASL----VQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       148 d~~g~~~~----~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      .|++....    .......++++ ..++.++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~D~~~~  118 (155)
T cd01065          87 NTTPVGMKPGDELPLPPSLLKPG-GVVYDVVYN  118 (155)
T ss_pred             eCcCCCCCCCCCCCCCHHHcCCC-CEEEEcCcC
Confidence            99887541    11222345666 677767643

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.17  E-value=0.012  Score=46.30  Aligned_cols=92  Identities=23%  Similarity=0.237  Sum_probs=59.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCC--eEEEEcCC----cch--------HHHHHhcCCceEEcCCCCCCccHHHHH
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI----SEK--------FEIGKRFGVTEFVNSKNCGDKSVSQII  135 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~--~v~~~~~~----~~~--------~~~~~~~g~~~vi~~~~~~~~~~~~~i  135 (258)
                      -++.+++|+|+|+.|..++..+...|.+  ++++++++    .++        .+++++++... .   +   .++.+.+
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~---~---~~l~~~l   95 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-T---G---GTLKEAL   95 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-c---c---CCHHHHH
Confidence            4578999999999999999888888997  89999998    444        23444443211 1   0   1233333


Q ss_pred             HHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          136 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .     ++|++|++++....-...++.+.++ ..+..+.
T Consensus        96 ~-----~~dvlIgaT~~G~~~~~~l~~m~~~-~ivf~ls  128 (226)
T cd05311          96 K-----GADVFIGVSRPGVVKKEMIKKMAKD-PIVFALA  128 (226)
T ss_pred             h-----cCCEEEeCCCCCCCCHHHHHhhCCC-CEEEEeC
Confidence            2     4899999997333123566666665 5555443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.17  E-value=0.0027  Score=55.70  Aligned_cols=79  Identities=24%  Similarity=0.326  Sum_probs=55.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc---------------------chHHHHHhcCCceEEcCCCCCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS---------------------EKFEIGKRFGVTEFVNSKNCGD  128 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~---------------------~~~~~~~~~g~~~vi~~~~~~~  128 (258)
                      .++++|+|+|+|+.|+.++..++..|+ +|+++++.+                     ...+.++++|++..++..-.  
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~--  215 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG--  215 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeC--
Confidence            367899999999999999999999999 898887654                     23466788897655544320  


Q ss_pred             ccHHHHHHHhcCCCCCEEEEecCChh
Q 025101          129 KSVSQIIIDMTDGGADYCFECVGLAS  154 (258)
Q Consensus       129 ~~~~~~i~~~~~~~~d~v~d~~g~~~  154 (258)
                      .++  .+.+.. .++|.||.++|...
T Consensus       216 ~~~--~~~~~~-~~~D~vilAtGa~~  238 (467)
T TIGR01318       216 RDI--SLDDLL-EDYDAVFLGVGTYR  238 (467)
T ss_pred             Ccc--CHHHHH-hcCCEEEEEeCCCC
Confidence            111  111211 16999999999743

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=97.16  E-value=0.0021  Score=49.47  Aligned_cols=99  Identities=16%  Similarity=0.244  Sum_probs=62.8

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      +.....++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++    .+...+ +...   .++.+.  .. +
T Consensus        24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~~---~d~~~~--~~-~   93 (197)
T PRK11207         24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDNL-HTAV---VDLNNL--TF-D   93 (197)
T ss_pred             HhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCcc-eEEe---cChhhC--Cc-C
Confidence            344456778999999875 7788888875 77 99999999987776654    232211 1111   111110  11 2


Q ss_pred             CCCCEEEEecC----C----hhhHHHHHHhhhcCCceEEEec
Q 025101          141 GGADYCFECVG----L----ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~~~d~v~d~~g----~----~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.||+|+.+..    .    ...+..+.+.|+|+ |.++.+.
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~~~~~~  134 (197)
T PRK11207         94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG-GYNLIVA  134 (197)
T ss_pred             CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence            37999997543    1    23467888889999 9966554

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.16  E-value=0.0027  Score=51.67  Aligned_cols=95  Identities=17%  Similarity=0.103  Sum_probs=60.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      ..+.+++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+. +++....+.. .   .+..+.+     ..+|+||+
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~---~~~~~~~-----~~~DivIn  191 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-D---LELQEEL-----ADFDLIIN  191 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-c---ccchhcc-----ccCCEEEE
Confidence            35789999999999999999999999669999999988876553 3432110111 1   0111111     26999999


Q ss_pred             ecCChhh-----HHHHHHhhhcCCceEEEec
Q 025101          149 CVGLASL-----VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       149 ~~g~~~~-----~~~~~~~l~~~~G~~v~~g  174 (258)
                      |++....     .......+.+. ..++.+-
T Consensus       192 aTp~g~~~~~~~~~~~~~~l~~~-~~v~Div  221 (278)
T PRK00258        192 ATSAGMSGELPLPPLPLSLLRPG-TIVYDMI  221 (278)
T ss_pred             CCcCCCCCCCCCCCCCHHHcCCC-CEEEEee
Confidence            9875431     01223556666 6666664

>PRK06128 oxidoreductase; Provisional

Probab=97.16  E-value=0.0077  Score=49.55  Aligned_cols=79  Identities=23%  Similarity=0.202  Sum_probs=47.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch--H----HHHHhcCCce-E--EcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--F----EIGKRFGVTE-F--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~--~----~~~~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      .|+++||+|+ |++|..+++.+...|+ +|+++.++.+.  .    +.+++.|... +  .|..+  .+++.+.+.+...
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  130 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD--EAFCRQLVERAVK  130 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHHHHH
Confidence            4789999986 8999999988888899 88877654332  1    2233345322 2  23322  1222222222221


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|++|.+.|.
T Consensus       131 ~~g~iD~lV~nAg~  144 (300)
T PRK06128        131 ELGGLDILVNIAGK  144 (300)
T ss_pred             HhCCCCEEEECCcc
Confidence              269999998873

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.0029  Score=50.90  Aligned_cols=78  Identities=15%  Similarity=0.175  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eE--EcCCCCCCccHH-HHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF--VNSKNCGDKSVS-QIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--i~~~~~~~~~~~-~~i~~~~~-  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+    .+.. .+  .|..+   ++.. +.+.+... 
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH---PEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC---HHHHHHHHHHHHHH
Confidence            5789999987 8999999999888999 99999998876554322    2322 12  34333   3322 22232211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|.+.|.
T Consensus        85 ~~~id~vi~~Ag~   97 (263)
T PRK07814         85 FGRLDIVVNNVGG   97 (263)
T ss_pred             cCCCCEEEECCCC
Confidence             379999998873

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.0033  Score=50.56  Aligned_cols=81  Identities=23%  Similarity=0.322  Sum_probs=52.5

Q ss_pred             CCCCCEEEEEcc-C-HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----cCCceE----EcCCCCCCccHHHHHHH
Q 025101           69 VEVGSTVVIFGL-G-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVTEF----VNSKNCGDKSVSQIIID  137 (258)
Q Consensus        69 ~~~g~~vlI~G~-g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-----~g~~~v----i~~~~~~~~~~~~~i~~  137 (258)
                      +.+++++||+|+ | ++|.++++.+...|+ +|+++++++++.+...+     +|...+    .|..+  .+++...+.+
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~   90 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS--EAQVDALIDA   90 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC--HHHHHHHHHH
Confidence            446789999986 6 799999999999999 89999888776544322     443222    23333  1222222222


Q ss_pred             hc--CCCCCEEEEecCC
Q 025101          138 MT--DGGADYCFECVGL  152 (258)
Q Consensus       138 ~~--~~~~d~v~d~~g~  152 (258)
                      ..  .+.+|++|.+.|.
T Consensus        91 ~~~~~g~id~li~~ag~  107 (262)
T PRK07831         91 AVERLGRLDVLVNNAGL  107 (262)
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            21  1379999999884

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.14  E-value=0.0033  Score=50.04  Aligned_cols=78  Identities=23%  Similarity=0.308  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce---EEcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE---FVNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +++++||+|+ |++|+.+++.+...|+ +|+++++++++.+.+    +..+...   ..|..+  .+++.+.+.....  
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD--EEDVEATFAQIAEDF   80 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4789999987 9999999999988899 899999887665433    2234331   223222  1222222333222  


Q ss_pred             CCCCEEEEecC
Q 025101          141 GGADYCFECVG  151 (258)
Q Consensus       141 ~~~d~v~d~~g  151 (258)
                      +++|.+|.+.|
T Consensus        81 ~~id~vi~~ag   91 (253)
T PRK08217         81 GQLNGLINNAG   91 (253)
T ss_pred             CCCCEEEECCC
Confidence            26899999887

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.14  E-value=0.005  Score=52.59  Aligned_cols=90  Identities=23%  Similarity=0.302  Sum_probs=58.3

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh--cC--Cc-eEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           75 VVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR--FG--VT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~--~g--~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      |+|+|+|.+|..+++.+...+-. +|++.+++.++.+.+.+  .+  +. ..+|..+     .. .+.+... +.|+|++
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~-~l~~~~~-~~dvVin   73 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND-----PE-SLAELLR-GCDVVIN   73 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT-----HH-HHHHHHT-TSSEEEE
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC-----HH-HHHHHHh-cCCEEEE
Confidence            68999999999999999876643 89999999999776643  22  21 2344433     22 2444433 5799999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEE
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIV  172 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~  172 (258)
                      |+|.......+-.|+..+ -.++.
T Consensus        74 ~~gp~~~~~v~~~~i~~g-~~yvD   96 (386)
T PF03435_consen   74 CAGPFFGEPVARACIEAG-VHYVD   96 (386)
T ss_dssp             -SSGGGHHHHHHHHHHHT--EEEE
T ss_pred             CCccchhHHHHHHHHHhC-CCeec
Confidence            999876455666666776 67776

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0027  Score=50.75  Aligned_cols=79  Identities=22%  Similarity=0.235  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-e--EEcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-E--FVNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~--vi~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +|+++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+    .+.. .  ..|..+  .+++.+.+.+...  
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ--HQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5789999987 8999999999888999 89999998876654422    2322 1  223333  1223332332221  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|+++.+.|.
T Consensus        85 g~id~lv~~ag~   96 (253)
T PRK05867         85 GGIDIAVCNAGI   96 (253)
T ss_pred             CCCCEEEECCCC
Confidence            379999998774

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.12  E-value=0.0023  Score=52.12  Aligned_cols=76  Identities=13%  Similarity=0.024  Sum_probs=51.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc-eEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      ++.+++|+|+|+.|.+++..+...|+++|+++.|+.+|.+.+ ++++.. .+....     .. +.+.... ..+|+||+
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~-----~~-~~~~~~~-~~~DiVIn  196 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE-----GD-SGGLAIE-KAAEVLVS  196 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc-----ch-hhhhhcc-cCCCEEEE
Confidence            578999999999999999999999988899999998887654 334321 111110     00 1111111 26999999


Q ss_pred             ecCCh
Q 025101          149 CVGLA  153 (258)
Q Consensus       149 ~~g~~  153 (258)
                      |++..
T Consensus       197 aTp~g  201 (282)
T TIGR01809       197 TVPAD  201 (282)
T ss_pred             CCCCC
Confidence            98754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.12  E-value=0.003  Score=51.20  Aligned_cols=78  Identities=18%  Similarity=0.219  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceE--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g--~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++||+|+ +  ++|.++++.+...|+ +|++++++++..+.+    ++.|....  .|-.+  .+++...+.+... 
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d--~~~v~~~~~~~~~~   82 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVED--IASVDAVFEALEKK   82 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 4  899999998888999 899888765332222    33453322  23333  1222223333221 


Q ss_pred             -CCCCEEEEecC
Q 025101          141 -GGADYCFECVG  151 (258)
Q Consensus       141 -~~~d~v~d~~g  151 (258)
                       +.+|+++++.|
T Consensus        83 ~g~iD~lVnnAG   94 (271)
T PRK06505         83 WGKLDFVVHAIG   94 (271)
T ss_pred             hCCCCEEEECCc
Confidence             37999999887

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=97.11  E-value=0.0079  Score=44.59  Aligned_cols=78  Identities=27%  Similarity=0.306  Sum_probs=47.8

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC--cchHHHH----HhcCCc-eEE--cCCCCCCccHHHHHHHhc--C
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI--SEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~--~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~--~  140 (258)
                      +++||+|+ +++|..+++.+...|..+|+.+.++  .++.+.+    +..+.. .++  |..+  .+++...+.+..  .
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSD--PESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTS--HHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccc--ccccccccccccccc
Confidence            47899986 8999998888877777578888888  3433322    334432 222  2222  123333333332  2


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|++|.+.|.
T Consensus        79 ~~ld~li~~ag~   90 (167)
T PF00106_consen   79 GPLDILINNAGI   90 (167)
T ss_dssp             SSESEEEEECSC
T ss_pred             cccccccccccc
Confidence            279999998886

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.10  E-value=0.0048  Score=52.41  Aligned_cols=96  Identities=17%  Similarity=0.177  Sum_probs=66.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      -++.++||+|+|-+|..++..+...|..+|+++-|+.+|.+ +++++|+. ++..+     ++.+.+.     .+|+||.
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~-----el~~~l~-----~~DvVis  244 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVALE-----ELLEALA-----EADVVIS  244 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHH-----HHHHhhh-----hCCEEEE
Confidence            36889999999999999999999999889999999988865 56779853 33332     2333332     5999999


Q ss_pred             ecCChhh---HHHHHHhhhcCCc-eEEEeccc
Q 025101          149 CVGLASL---VQEAYACCRKGWG-KTIVLGVD  176 (258)
Q Consensus       149 ~~g~~~~---~~~~~~~l~~~~G-~~v~~g~~  176 (258)
                      +++++..   -......+.+... -++.++.+
T Consensus       245 sTsa~~~ii~~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         245 STSAPHPIITREMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             ecCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence            9998652   2234444444313 35555543

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0022  Score=52.07  Aligned_cols=79  Identities=18%  Similarity=0.214  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCc-e--EEcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVT-E--FVNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~-~--vi~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+. +.. .  ..|..+  .+.+...+.+...  +++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~~~~   79 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTD--FDAIDAVVADAEATFGPI   79 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            3578999987 9999999998888899 899999988877655543 211 1  223333  1222232332221  269


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |+++.+.|.
T Consensus        80 d~vv~~ag~   88 (277)
T PRK06180         80 DVLVNNAGY   88 (277)
T ss_pred             CEEEECCCc
Confidence            999998875

>PRK06196 oxidoreductase; Provisional

Probab=97.10  E-value=0.0035  Score=51.93  Aligned_cols=79  Identities=18%  Similarity=0.216  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC-Cce-EEcCCCCCCccHHHHHHHhcC--CCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG-VTE-FVNSKNCGDKSVSQIIIDMTD--GGAD  144 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g-~~~-vi~~~~~~~~~~~~~i~~~~~--~~~d  144 (258)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ .++. ... ..|..+  .+++...+.+...  +++|
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d--~~~v~~~~~~~~~~~~~iD  101 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLAD--LESVRAFAERFLDSGRRID  101 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC--HHHHHHHHHHHHhcCCCCC
Confidence            5789999987 8999999988888899 899999988766543 2332 211 223333  1223233333222  3799


Q ss_pred             EEEEecCC
Q 025101          145 YCFECVGL  152 (258)
Q Consensus       145 ~v~d~~g~  152 (258)
                      ++|.+.|.
T Consensus       102 ~li~nAg~  109 (315)
T PRK06196        102 ILINNAGV  109 (315)
T ss_pred             EEEECCCC
Confidence            99998873

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.08  E-value=0.0049  Score=56.23  Aligned_cols=77  Identities=26%  Similarity=0.286  Sum_probs=55.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc---------------------hHHHHHhcCCceEEcCCCCCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVNSKNCGDK  129 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~---------------------~~~~~~~~g~~~vi~~~~~~~~  129 (258)
                      .+++|+|+|+|+.|+.++..++..|+ +|+++++.+.                     +.+.++++|++..++..-..+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            58999999999999999999999999 8999987763                     4566778888655554320011


Q ss_pred             cHHHHHHHhcCCCCCEEEEecCCh
Q 025101          130 SVSQIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus       130 ~~~~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      .+    .++. .++|.||.++|..
T Consensus       388 ~~----~~l~-~~~DaV~latGa~  406 (639)
T PRK12809        388 TF----SDLT-SEYDAVFIGVGTY  406 (639)
T ss_pred             CH----HHHH-hcCCEEEEeCCCC
Confidence            22    1221 2699999999974

>PRK06398 aldose dehydrogenase; Validated

Probab=97.07  E-value=0.0073  Score=48.48  Aligned_cols=74  Identities=22%  Similarity=0.279  Sum_probs=48.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHHHHHHhcC--CCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~~~d~v  146 (258)
                      +|+++||+|+ |++|.+++..+...|+ +|+++++++++..     ... ...|..+  ++++.+.+.+...  +.+|++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~-----~~~~~~~D~~~--~~~i~~~~~~~~~~~~~id~l   76 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN-----DVDYFKVDVSN--KEQVIKGIDYVISKYGRIDIL   76 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC-----ceEEEEccCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4789999987 8999999999988999 8999988765432     111 1123333  1223333333222  269999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |.+.|.
T Consensus        77 i~~Ag~   82 (258)
T PRK06398         77 VNNAGI   82 (258)
T ss_pred             EECCCC
Confidence            998774

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.06  E-value=0.0036  Score=49.82  Aligned_cols=79  Identities=19%  Similarity=0.216  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC--Cc-eE--EcCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG--VT-EF--VNSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g--~~-~v--i~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ .++.  .. .+  .|..+  .+++...+.+...  +
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   80 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD--EADVEAAVAAALERFG   80 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            4679999987 8999999988888899 899999998776543 2222  21 12  22222  1223333332211  2


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      .+|.||.+.|.
T Consensus        81 ~~d~vi~~ag~   91 (251)
T PRK07231         81 SVDILVNNAGT   91 (251)
T ss_pred             CCCEEEECCCC
Confidence            69999998874

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0048  Score=49.31  Aligned_cols=74  Identities=16%  Similarity=0.163  Sum_probs=49.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-e--EEcCCCCCCccHHHHHHHhcCCCC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-E--FVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~--vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      ++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+++    .+.. .  ..|..+   .   +.+.....+++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~---~~~~~~~~~~i   74 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD---A---IDRAQAAEWDV   74 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC---H---HHHHHHhcCCC
Confidence            468999987 8999999999998999 89999988766554432    2322 1  223333   2   22333333479


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|.+.|.
T Consensus        75 d~vi~~ag~   83 (257)
T PRK09291         75 DVLLNNAGI   83 (257)
T ss_pred             CEEEECCCc
Confidence            999998873

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.05  E-value=0.0013  Score=50.80  Aligned_cols=103  Identities=17%  Similarity=0.245  Sum_probs=68.1

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ..+....++||-+|++ +|..++.+++.+.  . +|+.++.++++.+.+++    .|...-|....   .+..+.+.++.
T Consensus        40 l~~~~~~k~vLEIGt~-~GySal~la~~l~~~g-~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~---gda~~~l~~l~  114 (205)
T PF01596_consen   40 LVRLTRPKRVLEIGTF-TGYSALWLAEALPEDG-KITTIEIDPERAEIARENFRKAGLDDRIEVIE---GDALEVLPELA  114 (205)
T ss_dssp             HHHHHT-SEEEEESTT-TSHHHHHHHHTSTTTS-EEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE---S-HHHHHHHHH
T ss_pred             HHHhcCCceEEEeccc-cccHHHHHHHhhcccc-eEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE---eccHhhHHHHH
Confidence            3444566899999986 4889999998763  4 99999999998877754    56432222222   34444454442


Q ss_pred             C----CCCCEEE-EecCC--hhhHHHHHHhhhcCCceEEEec
Q 025101          140 D----GGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~----~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .    +.||.|| |+--.  ..-+..+++.++++ |.++.=.
T Consensus       115 ~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~g-gvii~DN  155 (205)
T PF01596_consen  115 NDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPG-GVIIADN  155 (205)
T ss_dssp             HTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEE-EEEEEET
T ss_pred             hccCCCceeEEEEcccccchhhHHHHHhhhccCC-eEEEEcc
Confidence            2    3699998 66433  23477888999998 8877544

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.05  E-value=0.0025  Score=51.64  Aligned_cols=44  Identities=34%  Similarity=0.341  Sum_probs=39.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  114 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~  114 (258)
                      +|++++|+|+|+.+.+++.-++..|+++++++.|+.+|.+.+.+
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            57999999999999999999999998799999999998776644

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.0041  Score=49.70  Aligned_cols=79  Identities=19%  Similarity=0.266  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-EE--cCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+    ++.+... ++  |..+  .++....+.+...  
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD--EAYAKALVALAVERF   81 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            4679999987 8999999988888999 899999988776543    2234321 22  3322  1222222332221  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|++|.+.|.
T Consensus        82 ~~id~li~~ag~   93 (254)
T PRK07478         82 GGLDIAFNNAGT   93 (254)
T ss_pred             CCCCEEEECCCC
Confidence            279999998874

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.04  E-value=0.0071  Score=49.26  Aligned_cols=44  Identities=23%  Similarity=0.216  Sum_probs=37.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  113 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~  113 (258)
                      .++++++|+|+|+.|.+++..+...|+++++++.|+.+|.+.+.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            34789999999999999988888899989999999988876553

>PRK04457 spermidine synthase; Provisional

Probab=97.04  E-value=0.011  Score=47.68  Aligned_cols=95  Identities=13%  Similarity=0.148  Sum_probs=66.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CC----c--eEEcCCCCCCccHHHHHHHhcCCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV----T--EFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~----~--~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      .++++||++|+|+ |..+..+++.....++++++.+++-.+.+++. +.    .  .++.      .+..+.+.+. ++.
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~------~Da~~~l~~~-~~~  136 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE------ADGAEYIAVH-RHS  136 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE------CCHHHHHHhC-CCC
Confidence            4567899999875 88888888876544899999999999888773 31    1  1221      3444445432 237


Q ss_pred             CCEEE-EecCC---------hhhHHHHHHhhhcCCceEEEe
Q 025101          143 ADYCF-ECVGL---------ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       143 ~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      +|+|+ |....         ...++.+.+.|+|+ |.++..
T Consensus       137 yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg-Gvlvin  176 (262)
T PRK04457        137 TDVILVDGFDGEGIIDALCTQPFFDDCRNALSSD-GIFVVN  176 (262)
T ss_pred             CCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCC-cEEEEE
Confidence            99998 54321         24578899999999 998763

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.0042  Score=49.97  Aligned_cols=79  Identities=22%  Similarity=0.257  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----cCCce----EEcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVTE----FVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-----~g~~~----vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      .|++++|+|+ +++|..+++.+...|+ +|+++++++++.+.+.+     .+...    ..|..+  .+++.+.+.+...
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   83 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLD--EADVAAFAAAVEA   83 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence            5789999987 8999999999988999 89999998876654322     21111    123333  1222222332221


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +.+|+++++.|.
T Consensus        84 ~~g~id~li~~Ag~   97 (265)
T PRK07062         84 RFGGVDMLVNNAGQ   97 (265)
T ss_pred             hcCCCCEEEECCCC
Confidence              369999998874

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.03  E-value=0.0052  Score=48.84  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHhcCCc-eE--EcCCCCCCccHHHHHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~--~~~~~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~~  142 (258)
                      +|+++||+|+ |++|..+++.+...|+ +|+++++++..  .+.+++.+.. .+  .|..+  .+++...+.+...  ++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   80 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSD--IEAIKALVDSAVEEFGH   80 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHcCC
Confidence            5789999987 8999999988888899 89999876521  2333444432 12  23333  2333333333221  26


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|+++.+.|.
T Consensus        81 ~d~li~~ag~   90 (248)
T TIGR01832        81 IDILVNNAGI   90 (248)
T ss_pred             CCEEEECCCC
Confidence            9999998864

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.0035  Score=50.04  Aligned_cols=78  Identities=23%  Similarity=0.277  Sum_probs=50.3

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-eEE--cCCCCCCccHHHHHHHhcC--C
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      |+++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+.. .++  |..+  .+++...+.+...  +
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN--PEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHhC
Confidence            578999987 8999999999998999 8999998877654432    22322 222  3322  1223333333221  2


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      .+|+++++.|.
T Consensus        78 ~id~lI~~ag~   88 (252)
T PRK07677         78 RIDALINNAAG   88 (252)
T ss_pred             CccEEEECCCC
Confidence            69999998863

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.011  Score=47.78  Aligned_cols=74  Identities=19%  Similarity=0.206  Sum_probs=48.4

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce----EEcCCCCCCccHHH----HHHHhcC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE----FVNSKNCGDKSVSQ----IIIDMTD  140 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~----vi~~~~~~~~~~~~----~i~~~~~  140 (258)
                      +++|+|+ |++|..+++.+...|+ +|+++++++++.+.+    +..+...    ..|..+   ++..+    .+.+.. 
T Consensus         2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~~-   76 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISD---YDAVAAFAADIHAAH-   76 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC---HHHHHHHHHHHHHhc-
Confidence            6899986 8999999998888899 899988887665433    2234321    234443   33222    222222 


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|++|.+.|.
T Consensus        77 ~~id~lv~~ag~   88 (272)
T PRK07832         77 GSMDVVMNIAGI   88 (272)
T ss_pred             CCCCEEEECCCC
Confidence            269999998874

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.02  E-value=0.0046  Score=49.64  Aligned_cols=78  Identities=14%  Similarity=0.309  Sum_probs=48.3

Q ss_pred             CCCEEEEEccC---HHHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHhcCCceEE--cCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGLG---SIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVTEFV--NSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~g---~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~----~~~~g~~~vi--~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +|+++||+|++   ++|.++++.+...|+ +|++++++++..+.    .++++...++  |..+  .+++...+..... 
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   85 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVRE--PGQLEAVFARIAEE   85 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCC--HHHHHHHHHHHHHH
Confidence            57899999863   899999988888999 89888887543222    2334432222  3222  1223322322221 


Q ss_pred             -CCCCEEEEecC
Q 025101          141 -GGADYCFECVG  151 (258)
Q Consensus       141 -~~~d~v~d~~g  151 (258)
                       +.+|+++++.|
T Consensus        86 ~g~ld~lv~nAg   97 (258)
T PRK07533         86 WGRLDFLLHSIA   97 (258)
T ss_pred             cCCCCEEEEcCc
Confidence             37999999876

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.0051  Score=49.44  Aligned_cols=78  Identities=23%  Similarity=0.338  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-c--CCc-eE--EcCCCCCCccHHHHHHH-hc-CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F--GVT-EF--VNSKNCGDKSVSQIIID-MT-DG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~--g~~-~v--i~~~~~~~~~~~~~i~~-~~-~~  141 (258)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+ +  +.. ..  .|..+   .+-.+.+.+ .. -+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d---~~~~~~~~~~~~~~~   79 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTS---EAGREAVLARAREMG   79 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCC---HHHHHHHHHHHHhcC
Confidence            4678999986 8999999998888899 89999998877655432 2  211 12  22222   222222221 11 23


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      .+|.++.+.|.
T Consensus        80 ~id~lv~~ag~   90 (263)
T PRK09072         80 GINVLINNAGV   90 (263)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=97.02  E-value=0.01  Score=47.62  Aligned_cols=98  Identities=19%  Similarity=0.169  Sum_probs=66.3

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC-ceEEcCCCCCCccHHHHHHHhcC-CC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTD-GG  142 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~~i~~~~~-~~  142 (258)
                      ....+.++++||-+|+|. |..+..+++..+..+|++++.+++..+.+++.-. ..++..      +..    ++.. +.
T Consensus        25 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~------d~~----~~~~~~~   93 (258)
T PRK01683         25 ARVPLENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA------DIA----SWQPPQA   93 (258)
T ss_pred             hhCCCcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC------chh----ccCCCCC
Confidence            445667889999999874 7778888887643499999999988888776432 122221      111    1112 27


Q ss_pred             CCEEEEecC-----C-hhhHHHHHHhhhcCCceEEEec
Q 025101          143 ADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       143 ~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +|+|+-...     . ...+..+.+.|+|+ |.++...
T Consensus        94 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~~~~~~  130 (258)
T PRK01683         94 LDLIFANASLQWLPDHLELFPRLVSLLAPG-GVLAVQM  130 (258)
T ss_pred             ccEEEEccChhhCCCHHHHHHHHHHhcCCC-cEEEEEC
Confidence            999985433     1 24588899999999 9987653

>PRK06940 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.013  Score=47.62  Aligned_cols=77  Identities=23%  Similarity=0.355  Sum_probs=48.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-eE--EcCCCCCCccHHHHHHHhc-CCCC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIIDMT-DGGA  143 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~~i~~~~-~~~~  143 (258)
                      ++.++|+|+|++|..+++.+. .|+ +|+++++++++.+.+    ++.|.. .+  .|..+  .+++.+.+.+.. -+++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS--RESVKALAATAQTLGPV   77 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHhcCCC
Confidence            357889999899999888875 798 899999887665433    223422 12  23333  123333333321 1379


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|.+.|.
T Consensus        78 d~li~nAG~   86 (275)
T PRK06940         78 TGLVHTAGV   86 (275)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK06953 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.0065  Score=47.54  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=52.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHHHHH-HhcCCCCCEEEEe
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIII-DMTDGGADYCFEC  149 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~-~~~~~~~d~v~d~  149 (258)
                      ++++|+|+ |++|..+++.+...|+ +|+.+++++++.+.++..+.. ...|..+   .+..+.+. ...++++|.+|.+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~~~d~vi~~   77 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVAD---PASVAGLAWKLDGEALDAAVYV   77 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCC---HHHHHHHHHHhcCCCCCEEEEC
Confidence            46899986 8999999888877899 899999988877766665543 2234333   33333332 2322379999988


Q ss_pred             cCC
Q 025101          150 VGL  152 (258)
Q Consensus       150 ~g~  152 (258)
                      .|.
T Consensus        78 ag~   80 (222)
T PRK06953         78 AGV   80 (222)
T ss_pred             CCc
Confidence            764

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.0046  Score=48.68  Aligned_cols=79  Identities=18%  Similarity=0.156  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HH---hcCCce-EEcCCCCCCccHHHHHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GK---RFGVTE-FVNSKNCGDKSVSQIIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~-~~---~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~~  142 (258)
                      +++++||+|+ |.+|..+++.+...|+ +|+++++++++... ++   ..+... ..|..+  .+++...+.+...  ++
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVD--PQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCC--HHHHHHHHHHHHHHhCC
Confidence            4789999987 9999999998888899 89999997765432 22   233321 123222  1222222222221  27


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|+||.+.|.
T Consensus        83 ~d~vi~~ag~   92 (239)
T PRK12828         83 LDALVNIAGA   92 (239)
T ss_pred             cCEEEECCcc
Confidence            9999998763

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.0034  Score=49.67  Aligned_cols=81  Identities=22%  Similarity=0.250  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC-c---eEEcCCCC---CCccHHHHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV-T---EFVNSKNC---GDKSVSQIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~-~---~vi~~~~~---~~~~~~~~i~~~  138 (258)
                      ++++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+. .   .-.|..+.   +...+.+.+.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            4679999986 8999999988888899 8999999987665432    2221 1   11232210   012233344444


Q ss_pred             cCCCCCEEEEecCC
Q 025101          139 TDGGADYCFECVGL  152 (258)
Q Consensus       139 ~~~~~d~v~d~~g~  152 (258)
                      .++.+|.+|.+.|.
T Consensus        84 ~~~~id~vi~~ag~   97 (239)
T PRK08703         84 TQGKLDGIVHCAGY   97 (239)
T ss_pred             hCCCCCEEEEeccc
Confidence            43478999998873

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.99  E-value=0.022  Score=45.82  Aligned_cols=104  Identities=15%  Similarity=0.214  Sum_probs=60.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc-------------------hH----HHHHhcCCc-eEEcCCCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-------------------KF----EIGKRFGVT-EFVNSKNC  126 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~-------------------~~----~~~~~~g~~-~vi~~~~~  126 (258)
                      .+.+|+|+|+|++|..++..+...|..+++.++.+.-                   |.    +.+++.... .+....+.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~  108 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF  108 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence            5679999999999999999999999888988875421                   11    112222221 22222110


Q ss_pred             CCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          127 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       127 ~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                         -..+.+.++...++|+||||+++...-..+.+.+...+=.++..|...
T Consensus       109 ---i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag  156 (268)
T PRK15116        109 ---ITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG  156 (268)
T ss_pred             ---cChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence               001222333333699999999985533344444444314556555443

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=96.99  E-value=0.039  Score=44.86  Aligned_cols=59  Identities=24%  Similarity=0.303  Sum_probs=45.3

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE---cCCcchHHHHHhcCCceEEcCC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV---DVISEKFEIGKRFGVTEFVNSK  124 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~---~~~~~~~~~~~~~g~~~vi~~~  124 (258)
                      ....+++|.+|+--=+|++|.+++.+++..|+ +++.+   ..|.+|.+.++.+|+..+..+.
T Consensus        55 ~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy-~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          55 KRGLLKPGGTIVEATSGNTGIALAMVAAAKGY-RLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HcCCCCCCCEEEEcCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            44568999966554459999999999999999 66655   4577888999999997665554

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.97  E-value=0.0068  Score=49.03  Aligned_cols=70  Identities=20%  Similarity=0.074  Sum_probs=50.1

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceEEcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      ....+++++|+|+|+.+.+++..++..|+.+|+++.|++++.+.+. .++..    .     .   +.+.   ...+|+|
T Consensus       118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~----~-----~---~~~~---~~~~dlv  182 (272)
T PRK12550        118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE----W-----R---PDLG---GIEADIL  182 (272)
T ss_pred             CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc----c-----h---hhcc---cccCCEE
Confidence            3445678999999999999999998999978999999998876554 34311    0     0   0111   1268999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      ++|+.-
T Consensus       183 INaTp~  188 (272)
T PRK12550        183 VNVTPI  188 (272)
T ss_pred             EECCcc
Confidence            998863

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.97  E-value=0.0058  Score=48.97  Aligned_cols=81  Identities=19%  Similarity=0.199  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceEEcCCCCCCccH-HHHHHHhc--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSV-SQIIIDMT--DGG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~-~~~i~~~~--~~~  142 (258)
                      +++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    ++.+....+-.-++++.+. .+.+.+..  -++
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS   84 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999987 9999999999988999 899999888665432    3344432211112111222 22222221  126


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|.+.|.
T Consensus        85 ~d~vi~~ag~   94 (262)
T PRK13394         85 VDILVSNAGI   94 (262)
T ss_pred             CCEEEECCcc
Confidence            8999998874

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.97  E-value=0.0078  Score=49.27  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=31.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      ++++++|+|+|++|.+++..+...|+++|+++.|+.
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            578999999999999998888889996699999986

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=96.96  E-value=0.0084  Score=46.67  Aligned_cols=100  Identities=18%  Similarity=0.198  Sum_probs=63.4

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ....+++++++||-+|+|. |..+..+++.. . +|++++.+++..+.+++    ++...+ +...   .+..+   .+.
T Consensus        71 ~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~v-~~~~---~d~~~---~~~  140 (212)
T PRK00312         71 TELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHNV-SVRH---GDGWK---GWP  140 (212)
T ss_pred             HHhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCce-EEEE---CCccc---CCC
Confidence            3567788999999999874 65666666653 3 89999999877666543    444321 1111   11111   111


Q ss_pred             C-CCCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          140 D-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~-~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      . +.||+|+-............+.|+++ |+++..-
T Consensus       141 ~~~~fD~I~~~~~~~~~~~~l~~~L~~g-G~lv~~~  175 (212)
T PRK00312        141 AYAPFDRILVTAAAPEIPRALLEQLKEG-GILVAPV  175 (212)
T ss_pred             cCCCcCEEEEccCchhhhHHHHHhcCCC-cEEEEEE
Confidence            1 37999986555444467788999999 9987553

>PRK06194 hypothetical protein; Provisional

Probab=96.96  E-value=0.0058  Score=49.80  Aligned_cols=79  Identities=22%  Similarity=0.310  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc---CCce-EE--cCCCCCCccHHHHHHHhc--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF---GVTE-FV--NSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~---g~~~-vi--~~~~~~~~~~~~~i~~~~--~  140 (258)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+.. .++   +... ++  |..+  .+++.+.+....  -
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~   81 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD--AAQVEALADAALERF   81 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            3678999986 8999999988888899 899999887665433 222   3321 12  2222  122222222221  1


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|++|.+.|.
T Consensus        82 g~id~vi~~Ag~   93 (287)
T PRK06194         82 GAVHLLFNNAGV   93 (287)
T ss_pred             CCCCEEEECCCC
Confidence            368999998875

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.95  E-value=0.0019  Score=56.30  Aligned_cols=94  Identities=12%  Similarity=0.114  Sum_probs=62.3

Q ss_pred             hhcCCCCCCEEE----EEc-cCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHHHHHHh
Q 025101           65 RTANVEVGSTVV----IFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        65 ~~~~~~~g~~vl----I~G-~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ...+.++|+++|    |+| +|++|.+++|+++..|+ .|+++...+.+....+..+.+ .++|.+.   ....+.+...
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~l~~~  102 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG---ITDPADLKAL  102 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC---CCCHHHHHHH
Confidence            445677888887    776 49999999999999999 899887666544433334433 4555554   3333333322


Q ss_pred             cCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          139 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       139 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      .              ..+...++.+.++ |+++.++...
T Consensus       103 ~--------------~~~~~~l~~l~~~-griv~i~s~~  126 (450)
T PRK08261        103 Y--------------EFFHPVLRSLAPC-GRVVVLGRPP  126 (450)
T ss_pred             H--------------HHHHHHHHhccCC-CEEEEEcccc
Confidence            1              1256667777787 8888887543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=96.93  E-value=0.0028  Score=51.69  Aligned_cols=95  Identities=23%  Similarity=0.381  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eE-EcCCCCCCccHHHHHHHhcCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF-VNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v-i~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      ..+|++||=.|+|+ |.+++..++ +|+++|++++.++...+.+++    .|.. .+ +....    +..       .+.
T Consensus       159 ~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~----~~~-------~~~  225 (295)
T PF06325_consen  159 VKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE----DLV-------EGK  225 (295)
T ss_dssp             SSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS----CTC-------CS-
T ss_pred             ccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec----ccc-------ccc
Confidence            56789999999864 667766666 598899999999987766654    3322 22 21111    111       147


Q ss_pred             CCEEEEecCChh---hHHHHHHhhhcCCceEEEecccC
Q 025101          143 ADYCFECVGLAS---LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       143 ~d~v~d~~g~~~---~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      ||+|+-+.-...   ......+.++++ |.+++.|...
T Consensus       226 ~dlvvANI~~~vL~~l~~~~~~~l~~~-G~lIlSGIl~  262 (295)
T PF06325_consen  226 FDLVVANILADVLLELAPDIASLLKPG-GYLILSGILE  262 (295)
T ss_dssp             EEEEEEES-HHHHHHHHHHCHHHEEEE-EEEEEEEEEG
T ss_pred             CCEEEECCCHHHHHHHHHHHHHhhCCC-CEEEEccccH
Confidence            999997666543   244556678898 9999988654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.93  E-value=0.021  Score=45.78  Aligned_cols=78  Identities=17%  Similarity=0.261  Sum_probs=47.3

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCCc---chHHHH-Hhc-CCc-e--EEcCCCCCCccHHHHHHHhc
Q 025101           71 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS---EKFEIG-KRF-GVT-E--FVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~~---~~~~~~-~~~-g~~-~--vi~~~~~~~~~~~~~i~~~~  139 (258)
                      .|++++|+|+   +++|.++++.+...|+ +|+.+.++.   ++.+.+ +++ +.. .  ..|..+  .++....+.+..
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~   82 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS--DEEITACFETIK   82 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC--HHHHHHHHHHHH
Confidence            4789999986   5999999888888999 898887653   233323 333 211 1  123333  122333333322


Q ss_pred             C--CCCCEEEEecC
Q 025101          140 D--GGADYCFECVG  151 (258)
Q Consensus       140 ~--~~~d~v~d~~g  151 (258)
                      .  +.+|+++++.|
T Consensus        83 ~~~g~ld~lv~nag   96 (257)
T PRK08594         83 EEVGVIHGVAHCIA   96 (257)
T ss_pred             HhCCCccEEEECcc
Confidence            2  37999998876

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.93  E-value=0.023  Score=43.77  Aligned_cols=81  Identities=27%  Similarity=0.350  Sum_probs=54.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      -+|.+++|+|.|.+|..+++.+...|+ +|++.++++++.+.+.+ +|+. .++..+         +..   ..+|+++-
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~---------l~~---~~~Dv~vp   91 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT-VVAPEE---------IYS---VDADVFAP   91 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE-EEcchh---------hcc---ccCCEEEe
Confidence            367899999999999999999999999 99999988887766544 4653 333322         111   15888886


Q ss_pred             ecCChhhHHHHHHhhh
Q 025101          149 CVGLASLVQEAYACCR  164 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~  164 (258)
                      |......-...++.++
T Consensus        92 ~A~~~~I~~~~~~~l~  107 (200)
T cd01075          92 CALGGVINDDTIPQLK  107 (200)
T ss_pred             cccccccCHHHHHHcC
Confidence            5543332333444453

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.92  E-value=0.013  Score=47.58  Aligned_cols=95  Identities=20%  Similarity=0.269  Sum_probs=65.0

Q ss_pred             hcchhhhhhhhhhhhhcCC-CCCCEEEEEccC-HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCC
Q 025101           51 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  128 (258)
Q Consensus        51 ~~~~~~~ta~~~l~~~~~~-~~g~~vlI~G~g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  128 (258)
                      .+||.....+. +.+..++ -.|++++|+|.| .+|.-++.++...|+ .|++..+..                      
T Consensus       137 ~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t----------------------  192 (286)
T PRK14175        137 FVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS----------------------  192 (286)
T ss_pred             CCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc----------------------
Confidence            45554333333 3344433 379999999986 599999999999999 788765421                      


Q ss_pred             ccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          129 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       129 ~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      .++.+.++     .+|+||.++|.+..+..  +.++++ ..++.+|...
T Consensus       193 ~~l~~~~~-----~ADIVIsAvg~p~~i~~--~~vk~g-avVIDvGi~~  233 (286)
T PRK14175        193 KDMASYLK-----DADVIVSAVGKPGLVTK--DVVKEG-AVIIDVGNTP  233 (286)
T ss_pred             hhHHHHHh-----hCCEEEECCCCCcccCH--HHcCCC-cEEEEcCCCc
Confidence            12322232     59999999999874554  457888 8899998653

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.92  E-value=0.015  Score=45.27  Aligned_cols=104  Identities=20%  Similarity=0.247  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceEE-cC------CCCCCccHHHHHHHhc-
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFV-NS------KNCGDKSVSQIIIDMT-  139 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi-~~------~~~~~~~~~~~i~~~~-  139 (258)
                      +.++.+||+.|+|. |.-++.+|. .|. .|++++.|+.-.+.+ ++.+..... +.      +.....-+...+.++. 
T Consensus        32 ~~~~~rvLd~GCG~-G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        32 LPAGARVFVPLCGK-SLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCCeEEEeCCCc-hhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            35778999999985 888888886 699 899999999887764 333321100 00      0000000000011111 


Q ss_pred             --CCCCCEEEEecCC--------hhhHHHHHHhhhcCCceEEEeccc
Q 025101          140 --DGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       140 --~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                        .+.+|.|+|+..-        +..+..+.+.|+|+ |++++++..
T Consensus       109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg-G~~ll~~~~  154 (213)
T TIGR03840       109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG-ARQLLITLD  154 (213)
T ss_pred             ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC-CeEEEEEEE
Confidence              1268999996532        22477899999999 987777643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.92  E-value=0.0088  Score=40.06  Aligned_cols=85  Identities=26%  Similarity=0.279  Sum_probs=55.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC---CCeEEEE-cCCcchHHHH-HhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           74 TVVIFGLGSIGLAVAEGARLCG---ATRIIGV-DVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g---~~~v~~~-~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      +|.|+|+|.+|.++++-+...|   . +|+.+ ++++++.+.+ +++++..+.       .+..+.+.     ..|+||-
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~-----~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQATA-------DDNEEAAQ-----EADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTEEES-------EEHHHHHH-----HTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcccccc-------CChHHhhc-----cCCEEEE
Confidence            4778899999999998888888   6 78855 9999888766 557753221       12333333     4899999


Q ss_pred             ecCChhhHHHHHHhh---hcCCceEEEe
Q 025101          149 CVGLASLVQEAYACC---RKGWGKTIVL  173 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l---~~~~G~~v~~  173 (258)
                      |+.... +...+..+   .++ ..++.+
T Consensus        68 av~p~~-~~~v~~~i~~~~~~-~~vis~   93 (96)
T PF03807_consen   68 AVKPQQ-LPEVLSEIPHLLKG-KLVISI   93 (96)
T ss_dssp             -S-GGG-HHHHHHHHHHHHTT-SEEEEE
T ss_pred             EECHHH-HHHHHHHHhhccCC-CEEEEe
Confidence            998776 55444444   344 444443

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.008  Score=48.06  Aligned_cols=79  Identities=15%  Similarity=0.258  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch-HH-H---HHhcCCc-eEE--cCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FE-I---GKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~-~~-~---~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++||+|+ +++|.++++.+...|+ +|+++++++++ .+ .   +++.+.. ..+  |..+  .+++.+.+.+... 
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~   83 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS--KADLRAAVARTEAE   83 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4789999986 8999999999988999 89998876543 22 2   2333422 122  3322  1223333333221 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +.+|++|.+.|.
T Consensus        84 ~g~id~li~~ag~   96 (254)
T PRK06114         84 LGALTLAVNAAGI   96 (254)
T ss_pred             cCCCCEEEECCCC
Confidence             369999998874

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.91  E-value=0.0068  Score=48.63  Aligned_cols=76  Identities=20%  Similarity=0.257  Sum_probs=48.8

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCceE--EcCCCCCCccHHHHHHHhcC--CCCC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF--VNSKNCGDKSVSQIIIDMTD--GGAD  144 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v--i~~~~~~~~~~~~~i~~~~~--~~~d  144 (258)
                      ++||+|+ +++|.++++.+...|+ +|+++++++++.+.+.    +.+....  .|..+  .+++.+.+.+...  +++|
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d--~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSD--KDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCC--HHHHHHHHHHHHHhcCCCC
Confidence            6899987 8999999988888899 8999999887654432    2232122  23322  1223333333222  3799


Q ss_pred             EEEEecCC
Q 025101          145 YCFECVGL  152 (258)
Q Consensus       145 ~v~d~~g~  152 (258)
                      ++|.+.|.
T Consensus        79 ~li~naG~   86 (259)
T PRK08340         79 ALVWNAGN   86 (259)
T ss_pred             EEEECCCC
Confidence            99998874

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.89  E-value=0.0067  Score=48.56  Aligned_cols=79  Identities=19%  Similarity=0.203  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---cCCc-eE--EcCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVT-EF--VNSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~---~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      +|+++||+|+ |++|..+++.+...|+ +|+++++++++.+..++   .+.. .+  .|..+  .+++...+.+...  +
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTD--DAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhcC
Confidence            4789999987 8999999888888899 88888888876644433   3322 12  23322  1223333333322  3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|++|.+.|.
T Consensus        83 ~id~vi~~ag~   93 (258)
T PRK08628         83 RIDGLVNNAGV   93 (258)
T ss_pred             CCCEEEECCcc
Confidence            79999999883

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.89  E-value=0.0061  Score=48.82  Aligned_cols=79  Identities=19%  Similarity=0.244  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHhcCCce---EEcCCCCCCcc-HHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVTE---FVNSKNCGDKS-VSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~----~~~~g~~~---vi~~~~~~~~~-~~~~i~~~~~-  140 (258)
                      ++++++|+|+ |++|..+++.+...|+.+|+++++++++.+.    +++.+...   ..|..+   ++ +.+.+..... 
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~   81 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD---VEDCRRVVAAADEA   81 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC---HHHHHHHHHHHHHH
Confidence            5688999987 8999999999988999339999988765542    23344321   224333   33 2222222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|.+|.+.|.
T Consensus        82 ~g~id~li~~ag~   94 (260)
T PRK06198         82 FGRLDALVNAAGL   94 (260)
T ss_pred             hCCCCEEEECCCc
Confidence             269999998874

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.89  E-value=0.007  Score=48.38  Aligned_cols=79  Identities=24%  Similarity=0.326  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-eEE--cCCCCCCccHHHHHHHhc--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~--~  140 (258)
                      +|+++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    ++.|.. ..+  |..+  .+++...+.+..  -
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   85 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD--HDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            5789999986 9999999998888899 899999887665432    223322 122  3333  122322233222  1


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|++|.+.|.
T Consensus        86 ~~~d~li~~ag~   97 (255)
T PRK07523         86 GPIDILVNNAGM   97 (255)
T ss_pred             CCCCEEEECCCC
Confidence            269999998874

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.89  E-value=0.0065  Score=48.74  Aligned_cols=79  Identities=20%  Similarity=0.257  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc-----CCc-eE--EcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVT-EF--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~-----g~~-~v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. ++     +.. .+  .|..+  .+++...+.+...
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   82 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTD--AASVAAAVAAAEE   82 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4789999987 8999999998888999 8999998877655432 22     211 11  23322  1223333332221


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +.+|++|.+.|.
T Consensus        83 ~~g~id~li~~ag~   96 (260)
T PRK07063         83 AFGPLDVLVNNAGI   96 (260)
T ss_pred             HhCCCcEEEECCCc
Confidence              379999998873

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.011  Score=47.44  Aligned_cols=77  Identities=22%  Similarity=0.258  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----cCCc-eE--EcCCCCCCccHHHHHHHhcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVT-EF--VNSKNCGDKSVSQIIIDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-----~g~~-~v--i~~~~~~~~~~~~~i~~~~~~  141 (258)
                      ++++++|+|+ +++|..+++.+...|+ +|+++++++++.+.+.+     .+.. .+  .|..+   ++-.+.+.+.. +
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~---~~~~~~~~~~~-g   80 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS---PEAREQLAAEA-G   80 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC---HHHHHHHHHHh-C
Confidence            4789999987 8999999998888999 99999998876654322     2322 12  23322   22222222222 3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      .+|.+|.+.|.
T Consensus        81 ~id~lv~~ag~   91 (259)
T PRK06125         81 DIDILVNNAGA   91 (259)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.88  E-value=0.0072  Score=48.32  Aligned_cols=79  Identities=23%  Similarity=0.339  Sum_probs=49.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHhcCCce---EEcCCCCCCccHHHHHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVTE---FVNSKNCGDKSVSQIIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~--~~~~~~~g~~~---vi~~~~~~~~~~~~~i~~~~~--~~  142 (258)
                      +|+++||+|+ +++|.++++.+...|+ +|+++++++..  .+.+++.+...   ..|..+  .+++.+.+.+...  ++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQ--QKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC--HHHHHHHHHHHHHHcCC
Confidence            5789999987 8999999998888999 89888765422  22334445321   234333  1233333333221  36


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|+++.+.|.
T Consensus        84 iD~lv~~ag~   93 (251)
T PRK12481         84 IDILINNAGI   93 (251)
T ss_pred             CCEEEECCCc
Confidence            9999998874

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0067  Score=50.26  Aligned_cols=40  Identities=28%  Similarity=0.285  Sum_probs=34.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  111 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~  111 (258)
                      +|++++|+|+ +++|.++++.+...|+ +|++++|+.++.+.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~   53 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEA   53 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4789999987 8999999888888899 89999998876543

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.88  E-value=0.0067  Score=48.78  Aligned_cols=78  Identities=24%  Similarity=0.284  Sum_probs=47.6

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCceE--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g--~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +|+.++|+|+ +  ++|.++++.+...|+ +|+..+++++..+.++    +.|...+  .|-.+  .++....+.+... 
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~--~~~v~~~~~~~~~~   83 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTN--PKSISNLFDDIKEK   83 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCC--HHHHHHHHHHHHHH
Confidence            5788999987 4  799999888888899 8988877643222222    2343222  24333  1223333333222 


Q ss_pred             -CCCCEEEEecC
Q 025101          141 -GGADYCFECVG  151 (258)
Q Consensus       141 -~~~d~v~d~~g  151 (258)
                       +.+|+++++.|
T Consensus        84 ~g~iDilVnnag   95 (260)
T PRK06603         84 WGSFDFLLHGMA   95 (260)
T ss_pred             cCCccEEEEccc
Confidence             36999998876

>PRK06701 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.022  Score=46.64  Aligned_cols=80  Identities=20%  Similarity=0.133  Sum_probs=48.2

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch-HHH----HHhcCCce-E--EcCCCCCCccHHHHHHHhcC
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEI----GKRFGVTE-F--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~-~~~----~~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      -+++++||+|+ |++|..+++.+...|+ +|+++.+++++ .+.    ++..|... +  .|..+  .+.+.+.+.+...
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~i~~  120 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSD--EAFCKDAVEETVR  120 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            35789999987 8999999888888899 89888876532 222    22234322 2  23222  1222222322211


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +.+|++|.+.|.
T Consensus       121 ~~~~iD~lI~~Ag~  134 (290)
T PRK06701        121 ELGRLDILVNNAAF  134 (290)
T ss_pred             HcCCCCEEEECCcc
Confidence              268999988764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.86  E-value=0.02  Score=45.12  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .+.+|+|.|+|++|..++..+...|..+++.+|.+
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35799999999999999999999999888888543

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0074  Score=48.87  Aligned_cols=78  Identities=21%  Similarity=0.321  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hh---cC--Cc-eEE--cCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KR---FG--VT-EFV--NSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~---~g--~~-~vi--~~~~~~~~~~~~~i~~~~~  140 (258)
                      +++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.. ++   .+  .. .++  |..+  ++++...+.+...
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   82 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD--EDQVARAVDAATA   82 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC--HHHHHHHHHHHHH
Confidence            4689999997 8999999999988999 899999887665433 22   11  11 122  3322  1223333333221


Q ss_pred             --CCCCEEEEecC
Q 025101          141 --GGADYCFECVG  151 (258)
Q Consensus       141 --~~~d~v~d~~g  151 (258)
                        +++|++|.+.|
T Consensus        83 ~~~~~d~li~~ag   95 (276)
T PRK05875         83 WHGRLHGVVHCAG   95 (276)
T ss_pred             HcCCCCEEEECCC
Confidence              26899999886

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.86  E-value=0.013  Score=46.22  Aligned_cols=100  Identities=20%  Similarity=0.217  Sum_probs=58.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc-------------------hHH----HHHhcCCc-eEEcCCCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-------------------KFE----IGKRFGVT-EFVNSKNC  126 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~-------------------~~~----~~~~~g~~-~vi~~~~~  126 (258)
                      .+.+|+|+|+|++|..++..+...|..+++.+|...=                   |.+    .++++... .+....+ 
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~-   88 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE-   88 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee-
Confidence            3568999999999999999998899988888875431                   111    12222221 1211111 


Q ss_pred             CCccHH-HHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          127 GDKSVS-QIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       127 ~~~~~~-~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                         .+. +.+.++...++|+|+||+.+...-..+.+.+...+=.++..+
T Consensus        89 ---~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~  134 (231)
T cd00755          89 ---FLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSM  134 (231)
T ss_pred             ---ecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence               111 223333333699999999887644444455554413455444

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.86  E-value=0.0052  Score=49.18  Aligned_cols=78  Identities=17%  Similarity=0.234  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--eE--EcCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EF--VNSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~v--i~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      .|++++|+|+   +++|.++++.+...|+ +|+++.++++..+.++++...  ..  .|..+  .++..+.+.+...  +
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g   82 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVAS--DESIERAFATIKERVG   82 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCC--HHHHHHHHHHHHHHhC
Confidence            5789999986   4899999888888899 899988875434444443211  12  23322  1223333333221  3


Q ss_pred             CCCEEEEecC
Q 025101          142 GADYCFECVG  151 (258)
Q Consensus       142 ~~d~v~d~~g  151 (258)
                      .+|+++++.|
T Consensus        83 ~iD~lv~nAg   92 (252)
T PRK06079         83 KIDGIVHAIA   92 (252)
T ss_pred             CCCEEEEccc
Confidence            6999999876

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.86  E-value=0.016  Score=42.01  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=28.0

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      +|+|+|+|++|..+++.+...|.+++..++..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            48899999999999999999999888888754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.0077  Score=48.51  Aligned_cols=78  Identities=21%  Similarity=0.290  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-e--EEcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-E--FVNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~--vi~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+..    .+.+.. .  ..|..+  .+++...+.+...  
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~~   84 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD--YAAVEAAFAQIADEF   84 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5789999987 8999999998888999 899999887665433    222322 1  123333  1223333333321  


Q ss_pred             CCCCEEEEecC
Q 025101          141 GGADYCFECVG  151 (258)
Q Consensus       141 ~~~d~v~d~~g  151 (258)
                      +++|++|.+.|
T Consensus        85 ~~iD~vi~~ag   95 (264)
T PRK07576         85 GPIDVLVSGAA   95 (264)
T ss_pred             CCCCEEEECCC
Confidence            26899998775

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=96.85  E-value=0.0071  Score=46.36  Aligned_cols=95  Identities=18%  Similarity=0.115  Sum_probs=71.6

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCC
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GAD  144 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d  144 (258)
                      +..+..-..|.=+|||+ |...-.|++.+.-..+.++++|++..+.+++...+..+...         .++.+++. ..|
T Consensus        25 ~Vp~~~~~~v~DLGCGp-GnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~a---------Dl~~w~p~~~~d   94 (257)
T COG4106          25 RVPLERPRRVVDLGCGP-GNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEA---------DLRTWKPEQPTD   94 (257)
T ss_pred             hCCccccceeeecCCCC-CHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecc---------cHhhcCCCCccc
Confidence            34556677888889987 88999999988654999999999999988876654433332         36777777 899


Q ss_pred             EEEEecCC------hhhHHHHHHhhhcCCceEE
Q 025101          145 YCFECVGL------ASLVQEAYACCRKGWGKTI  171 (258)
Q Consensus       145 ~v~d~~g~------~~~~~~~~~~l~~~~G~~v  171 (258)
                      ++|.+..-      ...+...+..|+|+ |.+.
T Consensus        95 llfaNAvlqWlpdH~~ll~rL~~~L~Pg-g~LA  126 (257)
T COG4106          95 LLFANAVLQWLPDHPELLPRLVSQLAPG-GVLA  126 (257)
T ss_pred             hhhhhhhhhhccccHHHHHHHHHhhCCC-ceEE
Confidence            99854432      34588999999998 8764

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.85  E-value=0.0073  Score=48.62  Aligned_cols=79  Identities=22%  Similarity=0.352  Sum_probs=47.9

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceE--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +|+.+||+|+   +++|.+.++.+...|+ +|+.+.+.+...+.+++    .|....  .|-.+  .++....+.+... 
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   81 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVAS--DDEINQVFADLGKH   81 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCC--HHHHHHHHHHHHHH
Confidence            5789999983   5899999988888999 88887665433333332    342222  23322  2233333333222 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|+++++.|.
T Consensus        82 ~g~iD~lVnnAG~   94 (261)
T PRK08690         82 WDGLDGLVHSIGF   94 (261)
T ss_pred             hCCCcEEEECCcc
Confidence             379999998763

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.85  E-value=0.011  Score=49.37  Aligned_cols=36  Identities=28%  Similarity=0.294  Sum_probs=31.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .+.+|+|+|+|++|..+++.+...|..++.++|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            457899999999999999999999988888888753

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.0084  Score=47.23  Aligned_cols=78  Identities=12%  Similarity=0.060  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-EE--cCCCCCCccHHHHHH---Hhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIII---DMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~---~~~  139 (258)
                      +|++++|+|+ +++|.+.+..+...|+ +|+++.+++++.+.+    ++.+... .+  |..+  .+++.+.+.   +..
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS--QESIRHLFDAIEQQF   80 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4789999987 7999998888888899 899999888776543    2334321 22  3222  122322233   222


Q ss_pred             CCCCCEEEEecC
Q 025101          140 DGGADYCFECVG  151 (258)
Q Consensus       140 ~~~~d~v~d~~g  151 (258)
                      ++.+|++|.+.|
T Consensus        81 g~~iD~li~nag   92 (227)
T PRK08862         81 NRAPDVLVNNWT   92 (227)
T ss_pred             CCCCCEEEECCc
Confidence            326999999886

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.0079  Score=48.83  Aligned_cols=79  Identities=24%  Similarity=0.276  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCccHHHHHHHhc--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~--~  140 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    +..|... .  .|..+  .+++.+.+.+..  -
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   81 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH--REEVTHLADEAFRLL   81 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHHHHHHHHHHHHHc
Confidence            4788999986 8999999998888999 899998887665533    2234321 1  23322  122222222221  1


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|++|++.|.
T Consensus        82 g~id~li~nAg~   93 (275)
T PRK05876         82 GHVDVVFSNAGI   93 (275)
T ss_pred             CCCCEEEECCCc
Confidence            369999998873

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.0095  Score=47.16  Aligned_cols=80  Identities=20%  Similarity=0.231  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eE--EcCCCCCCccHHHHHHHhcC-
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      .++++++|+|+ |.+|..++..+...|+ +|+++++++++.+.+.+    .+.. .+  .|..+  .+++...+.+... 
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   80 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSN--PEAIAPGIAELLEQ   80 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            34678999986 9999999999888899 89999998876554322    2222 12  23322  1233233333221 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|.+|.+.|.
T Consensus        81 ~~~id~lv~~ag~   93 (241)
T PRK07454         81 FGCPDVLINNAGM   93 (241)
T ss_pred             cCCCCEEEECCCc
Confidence             269999998874

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.84  E-value=0.011  Score=47.04  Aligned_cols=101  Identities=16%  Similarity=0.270  Sum_probs=68.2

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHH----hcCCceEEcCCCCCCccHHHHHHHhc
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ..+....++||-+|.+ +|..++.+++.+  +. +|+.++.++++.+.++    +.|...-|....   .+..+.+.++.
T Consensus        74 l~~~~~ak~iLEiGT~-~GySal~la~al~~~g-~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~---G~a~e~L~~l~  148 (247)
T PLN02589         74 LLKLINAKNTMEIGVY-TGYSLLATALALPEDG-KILAMDINRENYELGLPVIQKAGVAHKIDFRE---GPALPVLDQMI  148 (247)
T ss_pred             HHHHhCCCEEEEEeCh-hhHHHHHHHhhCCCCC-EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe---ccHHHHHHHHH
Confidence            3445566899999974 588888888876  34 8999999998877664    456333233333   44555555542


Q ss_pred             -----CCCCCEEE-EecC--ChhhHHHHHHhhhcCCceEEE
Q 025101          140 -----DGGADYCF-ECVG--LASLVQEAYACCRKGWGKTIV  172 (258)
Q Consensus       140 -----~~~~d~v~-d~~g--~~~~~~~~~~~l~~~~G~~v~  172 (258)
                           .+.||.|| |+--  ....++.+++.++++ |.++.
T Consensus       149 ~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G-Gviv~  188 (247)
T PLN02589        149 EDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVG-GVIGY  188 (247)
T ss_pred             hccccCCcccEEEecCCHHHhHHHHHHHHHhcCCC-eEEEE
Confidence                 24799998 6543  233477889999998 88764

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.84  E-value=0.01  Score=47.62  Aligned_cols=77  Identities=19%  Similarity=0.219  Sum_probs=51.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cC-Cc-e--EEcCCCCCCccHHHHHHHhc---CCCC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG-VT-E--FVNSKNCGDKSVSQIIIDMT---DGGA  143 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g-~~-~--vi~~~~~~~~~~~~~i~~~~---~~~~  143 (258)
                      +++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+ .+ .. .  ..|..+  .+++.+.+.+..   .+++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTD--RAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            47899987 8999999998888899 89999998887665533 32 11 1  234433  122333333321   3479


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |+++.+.|.
T Consensus        79 d~vi~~ag~   87 (260)
T PRK08267         79 DVLFNNAGI   87 (260)
T ss_pred             CEEEECCCC
Confidence            999998875

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.84  E-value=0.017  Score=49.11  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=31.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .+.+|+|+|+|++|..++..+...|..+++.++.+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            56789999999999999999999999889998876

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=96.83  E-value=0.011  Score=44.81  Aligned_cols=94  Identities=14%  Similarity=0.141  Sum_probs=58.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCceEEcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      ++++||-+|+|. |..++.+++.....+|++++.+++..+.++    +.+.+.+ ....   .+..+ +.  ..+.+|+|
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i-~~i~---~d~~~-~~--~~~~fD~I  113 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNV-EIVN---GRAED-FQ--HEEQFDVI  113 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCe-EEEe---cchhh-cc--ccCCccEE
Confidence            388999999864 666667666554338999999988766554    3554322 1111   12221 11  12379999


Q ss_pred             EEec-CC-hhhHHHHHHhhhcCCceEEEe
Q 025101          147 FECV-GL-ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       147 ~d~~-g~-~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      +-.. .. +..++.+.+.++++ |+++..
T Consensus       114 ~s~~~~~~~~~~~~~~~~Lkpg-G~lvi~  141 (181)
T TIGR00138       114 TSRALASLNVLLELTLNLLKVG-GYFLAY  141 (181)
T ss_pred             EehhhhCHHHHHHHHHHhcCCC-CEEEEE
Confidence            8532 22 33466778889999 998865

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK08643 acetoin reductase; Validated

Probab=96.83  E-value=0.0079  Score=48.08  Aligned_cols=78  Identities=18%  Similarity=0.242  Sum_probs=49.8

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCce-E--EcCCCCCCccHHHHHHHhcC--C
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      ++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+... .  .|..+  ++.+.+.+.+...  +
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD--RDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            578999986 8999999999988999 8999998876654432    223221 1  23322  1222222322211  3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|++|.+.|.
T Consensus        79 ~id~vi~~ag~   89 (256)
T PRK08643         79 DLNVVVNNAGV   89 (256)
T ss_pred             CCCEEEECCCC
Confidence            69999998864

>PRK12937 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.034  Score=44.00  Aligned_cols=79  Identities=16%  Similarity=0.111  Sum_probs=47.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch-HH----HHHhcCCc-eEE--cCCCCCCccHHHHHHHhc--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FE----IGKRFGVT-EFV--NSKNCGDKSVSQIIIDMT--  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~-~~----~~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~--  139 (258)
                      ++++++|+|+ |++|..+++.+...|+ +|+.+.++.+. .+    .+++.+.. .++  |..+  .+++.+.+.+..  
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   80 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVAD--AAAVTRLFDAAETA   80 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            5689999986 9999999999988999 77776654332 22    22233422 222  2222  122333333221  


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                      -+++|++|.+.|.
T Consensus        81 ~~~id~vi~~ag~   93 (245)
T PRK12937         81 FGRIDVLVNNAGV   93 (245)
T ss_pred             cCCCCEEEECCCC
Confidence            1369999998874

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.83  E-value=0.0096  Score=48.26  Aligned_cols=93  Identities=15%  Similarity=0.088  Sum_probs=59.6

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC---CceEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG---VTEFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g---~~~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      ..++++++|+|+|++|.+++..+...|+ +|+++.+++++.+.+ +++.   ....+...            +.....+|
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~------------~~~~~~~D  180 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAFSMD------------ELPLHRVD  180 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEechh------------hhcccCcc
Confidence            3457899999999999999888888898 899999988775543 3332   21222111            11112699


Q ss_pred             EEEEecCChh--hH---HHHHHhhhcCCceEEEecc
Q 025101          145 YCFECVGLAS--LV---QEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       145 ~v~d~~g~~~--~~---~~~~~~l~~~~G~~v~~g~  175 (258)
                      +||+|++...  ..   ......++++ ..++.+..
T Consensus       181 ivInatp~gm~~~~~~~~~~~~~l~~~-~~v~D~~y  215 (270)
T TIGR00507       181 LIINATSAGMSGNIDEPPVPAEKLKEG-MVVYDMVY  215 (270)
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHcCCC-CEEEEecc
Confidence            9999998632  01   1123456666 67777753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.009  Score=47.65  Aligned_cols=78  Identities=26%  Similarity=0.308  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-eE--EcCCCCCCccHHH---HHHHhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQ---IIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~---~i~~~~  139 (258)
                      ++++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+.. ..  .|..+  .+++..   .+.+..
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   82 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTR--DAEVKALVEQTIAAY   82 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence            4789999987 8999999888888899 899999987764432    233422 12  22222  122222   222222


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                       +.+|++|.+.|.
T Consensus        83 -g~id~li~~ag~   94 (253)
T PRK06172         83 -GRLDYAFNNAGI   94 (253)
T ss_pred             -CCCCEEEECCCC
Confidence             368999998874

>PRK05717 oxidoreductase; Validated

Probab=96.83  E-value=0.0084  Score=47.96  Aligned_cols=79  Identities=18%  Similarity=0.208  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhcCCc-e--EEcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVT-E--FVNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~-~~~~g~~-~--vi~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      +|++++|+|+ |.+|..+++.+...|+ +|++++++.++.+. .++++.. .  ..|..+  .+++.+.+.+...  +.+
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVAD--EAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            4789999986 8999999888888899 89999887665443 3444422 1  223332  1222222333222  269


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|.+.|.
T Consensus        86 d~li~~ag~   94 (255)
T PRK05717         86 DALVCNAAI   94 (255)
T ss_pred             CEEEECCCc
Confidence            999998873

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.83  E-value=0.0085  Score=49.41  Aligned_cols=96  Identities=13%  Similarity=0.032  Sum_probs=65.6

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHH-HcCCCeEEEEcCCcchHHH-HHhcCCc--eEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEI-GKRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~-~~g~~~v~~~~~~~~~~~~-~~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      .....+++|+|+|..|.+.++.+. ..+.++|.+..+++++.+. +.++...  .+. .     .+..+.+.     ++|
T Consensus       122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~-----~~~~~av~-----~aD  190 (304)
T PRK07340        122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-P-----LDGEAIPE-----AVD  190 (304)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-E-----CCHHHHhh-----cCC
Confidence            346679999999999998888776 4687789999999887654 4444311  111 1     22333332     699


Q ss_pred             EEEEecCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          145 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       145 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      +|+.|+++..-+-..  .++|+ -++..+|....
T Consensus       191 iVitaT~s~~Pl~~~--~~~~g-~hi~~iGs~~p  221 (304)
T PRK07340        191 LVVTATTSRTPVYPE--AARAG-RLVVAVGAFTP  221 (304)
T ss_pred             EEEEccCCCCceeCc--cCCCC-CEEEecCCCCC
Confidence            999999876533333  37888 88999986644

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.82  E-value=0.0093  Score=54.61  Aligned_cols=78  Identities=27%  Similarity=0.282  Sum_probs=52.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc---------------------hHHHHHhcCCceEEcCCCCCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVNSKNCGD  128 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~---------------------~~~~~~~~g~~~vi~~~~~~~  128 (258)
                      ..+++|+|+|+|+.|+.++..++..|+ +|+++++.+.                     ..+.++++|++...+..-..+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  403 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD  403 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence            468899999999999999999999999 8999987543                     244566778653333211000


Q ss_pred             ccHHHHHHHhcCCCCCEEEEecCCh
Q 025101          129 KSVSQIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus       129 ~~~~~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      -.+ +.+.    .++|.||.++|..
T Consensus       404 i~~-~~~~----~~~DavilAtGa~  423 (654)
T PRK12769        404 ISL-ESLL----EDYDAVFVGVGTY  423 (654)
T ss_pred             CCH-HHHH----hcCCEEEEeCCCC
Confidence            111 1111    1699999998863

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.82  E-value=0.0088  Score=48.20  Aligned_cols=80  Identities=15%  Similarity=0.220  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch----HHHHHhcC-Cc-eEEcCCCCCCccHHHHHHHhcCC-
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK----FEIGKRFG-VT-EFVNSKNCGDKSVSQIIIDMTDG-  141 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~----~~~~~~~g-~~-~vi~~~~~~~~~~~~~i~~~~~~-  141 (258)
                      -+|+.|||+|+ +++|.+.++=...+|+ +++.++.+++-    .+.+++.| +. .+.|-.+  .+++....++...+ 
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~--~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD--REEIYRLAKKVKKEV  112 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCC--HHHHHHHHHHHHHhc
Confidence            36999999987 6999887666666788 88888877654    33445555 21 2334433  23444333333222 


Q ss_pred             -CCCEEEEecCC
Q 025101          142 -GADYCFECVGL  152 (258)
Q Consensus       142 -~~d~v~d~~g~  152 (258)
                       .+|+++++.|-
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence             79999998875

>PRK06179 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.0041  Score=50.17  Aligned_cols=77  Identities=22%  Similarity=0.261  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce-EEcCCCCCCccHHHHHHHhcC--CCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~~~d~v  146 (258)
                      .+++++|+|+ |++|..+++.+...|+ +|+++++++++.+..  .+... ..|..+  .+++.+.+.+...  +.+|++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~--~~~~~~~~D~~d--~~~~~~~~~~~~~~~g~~d~l   77 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPI--PGVELLELDVTD--DASVQAAVDEVIARAGRIDVL   77 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccc--CCCeeEEeecCC--HHHHHHHHHHHHHhCCCCCEE
Confidence            3568999987 8999999888888899 899999886554322  12221 223333  2333333333322  269999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |.+.|.
T Consensus        78 i~~ag~   83 (270)
T PRK06179         78 VNNAGV   83 (270)
T ss_pred             EECCCC
Confidence            999884

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.0084  Score=47.82  Aligned_cols=78  Identities=17%  Similarity=0.195  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eEE--cCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFV--NSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+.++++.++.+.+.+    .+.. ..+  |..+  .++..+.+.+...  
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   83 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE--MEQIDALFAHIRERH   83 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 8999999999988999 99999988766544322    2322 222  3332  1222222332221  


Q ss_pred             CCCCEEEEecC
Q 025101          141 GGADYCFECVG  151 (258)
Q Consensus       141 ~~~d~v~d~~g  151 (258)
                      +.+|+++.+.|
T Consensus        84 ~~id~li~~ag   94 (252)
T PRK07035         84 GRLDILVNNAA   94 (252)
T ss_pred             CCCCEEEECCC
Confidence            26999998886

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.81  E-value=0.01  Score=46.94  Aligned_cols=79  Identities=23%  Similarity=0.298  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    +..+... +  .|..+  ++.+.+.+.+...  
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD--EAAVRALIEAAVEAF   80 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            3578999997 9999999998888899 799999988775443    2334322 2  23333  1223333333221  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|.++.+.|.
T Consensus        81 ~~id~vi~~ag~   92 (246)
T PRK05653         81 GALDILVNNAGI   92 (246)
T ss_pred             CCCCEEEECCCc
Confidence            268999998864

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.81  E-value=0.021  Score=43.73  Aligned_cols=76  Identities=26%  Similarity=0.307  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-c----CCce-EEcCCCCCCccHHHHHHHhcCCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GVTE-FVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~----g~~~-vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      ++.+++|+|+ |.+|..++..+...|. +|+++.|+.++.+.+.+ +    +... ..+..+  .+++.+.+    . ++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~----~-~~   98 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD--DAARAAAI----K-GA   98 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC--HHHHHHHH----h-cC
Confidence            5789999986 9999998888888888 89999998877655432 2    3221 122222  01222222    1 68


Q ss_pred             CEEEEecCChh
Q 025101          144 DYCFECVGLAS  154 (258)
Q Consensus       144 d~v~d~~g~~~  154 (258)
                      |+||.+++...
T Consensus        99 diVi~at~~g~  109 (194)
T cd01078          99 DVVFAAGAAGV  109 (194)
T ss_pred             CEEEECCCCCc
Confidence            99999887655

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.80  E-value=0.0094  Score=47.86  Aligned_cols=78  Identities=21%  Similarity=0.302  Sum_probs=49.8

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCccHHHHHHHhcC--C
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      +.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    +..+... +  .|..+  .+.+...+.+...  +
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSD--AEACERLIEAAVARFG   77 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHcC
Confidence            357999987 9999999998888899 899999987665433    2234322 1  23222  1223333333221  2


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|+||.+.|.
T Consensus        78 ~id~vi~~ag~   88 (263)
T PRK06181         78 GIDILVNNAGI   88 (263)
T ss_pred             CCCEEEECCCc
Confidence            69999998764

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.80  E-value=0.014  Score=46.33  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=30.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .+.+|+|.|+|++|..+++.+...|..+++.+|.+
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            35789999999999999999999999888887654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.80  E-value=0.0092  Score=47.82  Aligned_cols=79  Identities=20%  Similarity=0.372  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-eE--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +++++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+.    +.+.. .+  .|..+  .+++.+.+.++..  
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d--~~~i~~~~~~~~~~~   87 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVAD--EADIERLAEETLERF   87 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5789999986 9999999998888999 8999999887765443    22322 12  23332  1223222222221  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|.+|.+.|.
T Consensus        88 ~~id~vi~~ag~   99 (259)
T PRK08213         88 GHVDILVNNAGA   99 (259)
T ss_pred             CCCCEEEECCCC
Confidence            269999998774

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=96.80  E-value=0.019  Score=46.12  Aligned_cols=96  Identities=23%  Similarity=0.144  Sum_probs=67.5

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcC-C
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD-G  141 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~-~  141 (258)
                      .......++++||-+|+|. |..+..+++.. +. +|++++.++...+.+++.+.+ ++.      .+.    .++.. +
T Consensus        22 l~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~-~~~------~d~----~~~~~~~   88 (255)
T PRK14103         22 LARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVD-ART------GDV----RDWKPKP   88 (255)
T ss_pred             HHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCc-EEE------cCh----hhCCCCC
Confidence            4555667889999999875 77778888765 55 899999999888888776654 221      122    11222 3


Q ss_pred             CCCEEEEecC-----C-hhhHHHHHHhhhcCCceEEEe
Q 025101          142 GADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       142 ~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      .||+|+-...     . ...+..+.+.|+|+ |.++..
T Consensus        89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~  125 (255)
T PRK14103         89 DTDVVVSNAALQWVPEHADLLVRWVDELAPG-SWIAVQ  125 (255)
T ss_pred             CceEEEEehhhhhCCCHHHHHHHHHHhCCCC-cEEEEE
Confidence            7999986432     2 33577889999999 998765

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.80  E-value=0.0089  Score=49.30  Aligned_cols=79  Identities=18%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc-----CCc-eE--EcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF-----GVT-EF--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~-----g~~-~v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      .|++++|+|+ |++|..+++.+...|+ +|++++++.++.+.+ +++     +.. .+  .|..+  .+++.+.+.++..
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~   91 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS--LASVRAAADALRA   91 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC--HHHHHHHHHHHHh
Confidence            5789999987 8999999988888899 899999887765432 211     111 12  23333  1223223333322


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|++|.+.|.
T Consensus        92 ~~~~iD~li~nAg~  105 (306)
T PRK06197         92 AYPRIDLLINNAGV  105 (306)
T ss_pred             hCCCCCEEEECCcc
Confidence              269999998873

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.79  E-value=0.0071  Score=48.48  Aligned_cols=78  Identities=26%  Similarity=0.292  Sum_probs=49.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---cCCce---EEcCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVTE---FVNSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~---~g~~~---vi~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++...+..++   .+...   ..|..+  .++....+.+...  +
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLET--YAGAQAAMAAAVEAFG   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCC--HHHHHHHHHHHHHHcC
Confidence            4689999987 8999999998888899 89999887543333332   34321   233333  1223333333221  2


Q ss_pred             CCCEEEEecC
Q 025101          142 GADYCFECVG  151 (258)
Q Consensus       142 ~~d~v~d~~g  151 (258)
                      ++|+++.+.|
T Consensus        84 ~id~lv~nAg   93 (260)
T PRK12823         84 RIDVLINNVG   93 (260)
T ss_pred             CCeEEEECCc
Confidence            7999999886

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.79  E-value=0.0092  Score=48.44  Aligned_cols=103  Identities=17%  Similarity=0.233  Sum_probs=64.0

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHH-HhcCCceE--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIG-KRFGVTEF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~~~---~~~~~-~~~g~~~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      .|+++||+|+   +++|.++++.+...|+ +|+.++++++   +.+.+ ++++....  .|-.+  .+++...+.+... 
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~i~~~   80 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSK--PEHFKSLAESLKKD   80 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCC--HHHHHHHHHHHHHH
Confidence            4789999986   4899999998888999 8998888753   22222 34453222  34333  1223333333222 


Q ss_pred             -CCCCEEEEecCCh--------------h---------------hHHHHHHhhhcCCceEEEecccC
Q 025101          141 -GGADYCFECVGLA--------------S---------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       141 -~~~d~v~d~~g~~--------------~---------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                       +.+|+++++.|..              .               ..+..+..+..+ |+++.++...
T Consensus        81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-g~Iv~isS~~  146 (274)
T PRK08415         81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG-ASVLTLSYLG  146 (274)
T ss_pred             cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcEEEEecCC
Confidence             3799999988731              0               234455566677 9998887543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=96.79  E-value=0.022  Score=43.71  Aligned_cols=100  Identities=12%  Similarity=0.165  Sum_probs=61.5

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHh
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      +.+.....++.+||-+|+|. |..+..+++ .|. +|++++.+++..+.+++    .+..  +....   .+... . ..
T Consensus        22 l~~~~~~~~~~~vLDiGcG~-G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~---~d~~~-~-~~   91 (195)
T TIGR00477        22 VREAVKTVAPCKTLDLGCGQ-GRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENLP--LRTDA---YDINA-A-AL   91 (195)
T ss_pred             HHHHhccCCCCcEEEeCCCC-CHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEe---ccchh-c-cc
Confidence            33444555677999999874 777777776 477 89999999887776543    2322  11111   11110 0 11


Q ss_pred             cCCCCCEEEEecC-----C---hhhHHHHHHhhhcCCceEEEec
Q 025101          139 TDGGADYCFECVG-----L---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ~~~~~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                       ++.+|+|+.+..     .   ...+..+.+.|+|+ |.++.+.
T Consensus        92 -~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lli~~  133 (195)
T TIGR00477        92 -NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG-GYNLIVA  133 (195)
T ss_pred             -cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC-cEEEEEE
Confidence             236999986422     1   23577888899999 9866554

Part of a tellurite-reducing operon tehA and tehB

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.011  Score=47.12  Aligned_cols=79  Identities=25%  Similarity=0.263  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-e--EEcCCCCCCccHHHHHHHhc--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-E--FVNSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~--vi~~~~~~~~~~~~~i~~~~--~  140 (258)
                      .++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.    +.+.. .  ..|..+  .+++.....+..  .
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   81 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD--PDSAKAMADATVSAF   81 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence            4688999987 9999999998888899 8999998876553332    22221 1  223332  122222222221  1


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|+||.+.|.
T Consensus        82 ~~id~vi~~ag~   93 (250)
T PRK07774         82 GGIDYLVNNAAI   93 (250)
T ss_pred             CCCCEEEECCCC
Confidence            269999998873

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.0091  Score=47.74  Aligned_cols=79  Identities=16%  Similarity=0.214  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+    .+..   ...|..+  .+++...+.+...  
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD--EDQCANLVALALERF   80 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC--HHHHHHHHHHHHHHc
Confidence            5689999987 8999999998888999 89999988876544322    2322   1223322  1223333332221  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|++|.+.|.
T Consensus        81 g~~d~vi~~ag~   92 (258)
T PRK07890         81 GRVDALVNNAFR   92 (258)
T ss_pred             CCccEEEECCcc
Confidence            268999998864

>PRK08264 short chain dehydrogenase; Validated

Probab=96.79  E-value=0.012  Score=46.52  Aligned_cols=75  Identities=16%  Similarity=0.197  Sum_probs=49.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-eE--EcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EF--VNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      .+++++|+|+ |.+|..+++.+...|+.+|+++++++++.+.   .+.. .+  .|..+   .+-.+.+.+.. +.+|+|
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~---~~~~~~~~~~~-~~id~v   77 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTD---PASVAAAAEAA-SDVTIL   77 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCC---HHHHHHHHHhc-CCCCEE
Confidence            4678999986 9999999998888898679999888765543   3222 12  23332   22222222222 258999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |.+.|.
T Consensus        78 i~~ag~   83 (238)
T PRK08264         78 VNNAGI   83 (238)
T ss_pred             EECCCc
Confidence            988876

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.79  E-value=0.032  Score=43.65  Aligned_cols=103  Identities=19%  Similarity=0.236  Sum_probs=61.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc------ch-------------HHHHH----hcCC-ceEEcCCCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS------EK-------------FEIGK----RFGV-TEFVNSKNC  126 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~------~~-------------~~~~~----~~g~-~~vi~~~~~  126 (258)
                      +...|+|.|.|++|..++..+...|..++..++...      .|             .+.++    +... ..|.-.++ 
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~-  107 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND-  107 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh-
Confidence            467899999999999999999999998888876432      11             11111    1111 11211111 


Q ss_pred             CCccHHHHHHHhcCCCCCEEEEecCChhh-HHHHHHhhhcCCceEEEecccC
Q 025101          127 GDKSVSQIIIDMTDGGADYCFECVGLASL-VQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       127 ~~~~~~~~i~~~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                        -=..+.+.++...++|+|+||..+-.. +..+..|.+.+ =.++..+...
T Consensus       108 --f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k-i~vIss~Gag  156 (263)
T COG1179         108 --FITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK-IPVISSMGAG  156 (263)
T ss_pred             --hhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC-CCEEeecccc
Confidence              111234455555589999999987442 34444455555 5666665444

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.79  E-value=0.0099  Score=49.33  Aligned_cols=95  Identities=11%  Similarity=0.084  Sum_probs=60.6

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEE-cCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      +|+|+|+ |-+|..+++.+...|. +|.+++|+.++...+...++..+. |..+   .+   .+.+... ++|+||.+++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d---~~---~l~~al~-g~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLSL---PE---TLPPSFK-GVTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCCC---HH---HHHHHHC-CCCEEEECCC
Confidence            6999987 9999999998888898 899999987766555555654332 3222   22   2222222 6899999865


Q ss_pred             Chh------------hHHHHHHhhhcC-CceEEEeccc
Q 025101          152 LAS------------LVQEAYACCRKG-WGKTIVLGVD  176 (258)
Q Consensus       152 ~~~------------~~~~~~~~l~~~-~G~~v~~g~~  176 (258)
                      ...            .....++.++.. -.+++.++..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         74 SRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             CCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence            321            112344555544 1378877753

>PRK08589 short chain dehydrogenase; Validated

Probab=96.78  E-value=0.0085  Score=48.51  Aligned_cols=79  Identities=24%  Similarity=0.325  Sum_probs=49.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---cCCc---eEEcCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVT---EFVNSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~---~g~~---~vi~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      +++++||+|+ +++|.++++.+...|+ +|++++++++..+.+++   .+..   ...|..+  .+++...+.+...  +
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISD--EQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHHHcC
Confidence            4789999987 8999999888888899 89999988332223332   3321   1233333  1223233333221  2


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      .+|++|.+.|.
T Consensus        82 ~id~li~~Ag~   92 (272)
T PRK08589         82 RVDVLFNNAGV   92 (272)
T ss_pred             CcCEEEECCCC
Confidence            69999998764

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=96.78  E-value=0.027  Score=43.50  Aligned_cols=98  Identities=17%  Similarity=0.200  Sum_probs=64.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc-CCCCCE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT-DGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~-~~~~d~  145 (258)
                      ++.+||-+|+|. |..+..+++.....+|++++.+++..+.+++    .+...+- ...   .+..+.+.... ++.+|.
T Consensus        40 ~~~~VLDiGcGt-G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~-~~~---~d~~~~l~~~~~~~~~D~  114 (202)
T PRK00121         40 DAPIHLEIGFGK-GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLR-LLC---GDAVEVLLDMFPDGSLDR  114 (202)
T ss_pred             CCCeEEEEccCC-CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEE-EEe---cCHHHHHHHHcCccccce
Confidence            678999999875 7788888887643489999999998887754    2332221 111   23323343323 337999


Q ss_pred             EEEecCC--------------hhhHHHHHHhhhcCCceEEEec
Q 025101          146 CFECVGL--------------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       146 v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      |+-....              ...+..+.+.|+|+ |.++...
T Consensus       115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~~  156 (202)
T PRK00121        115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFAT  156 (202)
T ss_pred             EEEECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEEc
Confidence            8854321              34578889999999 9998654

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.0092  Score=47.48  Aligned_cols=79  Identities=22%  Similarity=0.210  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc--CCc-eEE--cCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF--GVT-EFV--NSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~--g~~-~vi--~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      ++++++|+|+ |.+|..+++.+...|+ +|+.+.++.++.+... ++  +.. .++  |..+  .+.+.+.+.....  +
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~   80 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGS--AEAVEALVDFVAARWG   80 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHcC
Confidence            4679999987 8999999888877898 8999998876654332 22  321 122  3222  1223222322221  3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|++|.+.|.
T Consensus        81 ~id~vi~~ag~   91 (252)
T PRK06138         81 RLDVLVNNAGF   91 (252)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.011  Score=46.37  Aligned_cols=74  Identities=18%  Similarity=0.242  Sum_probs=48.9

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceE-EcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      +++|+|+ |++|..+++.+...|+ +|+.+++++++.+.+ ++++...+ .|..+   ++..+.+.+...+.+|+++++.
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~id~lv~~a   77 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTD---PASLEEARGLFPHHLDTIVNVP   77 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCC---HHHHHHHHHHHhhcCcEEEECC
Confidence            5899986 8999999998888899 899999888776544 34444322 34333   3333333222222689999876


Q ss_pred             C
Q 025101          151 G  151 (258)
Q Consensus       151 g  151 (258)
                      |
T Consensus        78 g   78 (223)
T PRK05884         78 A   78 (223)
T ss_pred             C
Confidence            4

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.77  E-value=0.012  Score=49.14  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      ...+|+|+|+|++|..+++.+...|..++..++.+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45789999999999999999999999899999875

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.76  E-value=0.02  Score=45.68  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=30.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .+.+|+|+|+|++|..++..+...|..++.+++.+
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46799999999999999999999999888888653

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.76  E-value=0.004  Score=45.60  Aligned_cols=95  Identities=19%  Similarity=0.155  Sum_probs=56.1

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCC--C-CCccHHHHHHHhcCCCCCEEEEecC
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN--C-GDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~--~-~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      |+|+|+|++|...+..++..|. +|..+++.+ +.+.+++.|........+  . .+......  ....+.+|+||-|+-
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP--SADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--GHHHSTESEEEE-SS
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc--hhccCCCcEEEEEec
Confidence            6899999999998888877898 899999888 777777766421111100  0 00000000  111227999999987


Q ss_pred             Chh---hHHHHHHhhhcCCceEEEec
Q 025101          152 LAS---LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       152 ~~~---~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +..   .++.+...+.+. ..++.+-
T Consensus        77 a~~~~~~l~~l~~~~~~~-t~iv~~q  101 (151)
T PF02558_consen   77 AYQLEQALQSLKPYLDPN-TTIVSLQ  101 (151)
T ss_dssp             GGGHHHHHHHHCTGEETT-EEEEEES
T ss_pred             ccchHHHHHHHhhccCCC-cEEEEEe
Confidence            655   233344444444 5666553

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=96.76  E-value=0.028  Score=42.82  Aligned_cols=97  Identities=15%  Similarity=0.238  Sum_probs=63.4

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCce--EEcCCCCCCccHHHHHHHh
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~~~  138 (258)
                      ....+.++.+||-+|+|. |..++.+++.....+|++++.+++..+.+++    ++...  ++..      +....    
T Consensus        25 ~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~------d~~~~----   93 (187)
T PRK08287         25 SKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG------EAPIE----   93 (187)
T ss_pred             HhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec------Cchhh----
Confidence            455677889999999874 7777777776543389999999987776653    44322  2221      11111    


Q ss_pred             cCCCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEe
Q 025101          139 TDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       139 ~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      ..+.+|+|+.....   ...+..+.+.|+++ |+++..
T Consensus        94 ~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~lv~~  130 (187)
T PRK08287         94 LPGKADAIFIGGSGGNLTAIIDWSLAHLHPG-GRLVLT  130 (187)
T ss_pred             cCcCCCEEEECCCccCHHHHHHHHHHhcCCC-eEEEEE
Confidence            12379999854321   23467888999999 998764

>PRK07985 oxidoreductase; Provisional

Probab=96.75  E-value=0.03  Score=45.93  Aligned_cols=103  Identities=21%  Similarity=0.165  Sum_probs=61.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc--chHHHH----HhcCCce-E--EcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS--EKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~--~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++.++.  ++.+.+    ++.|... +  .|..+  .+++.+.+.+...
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~  124 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD--EKFARSLVHEAHK  124 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            5689999987 8999999998888899 888876543  223222    2334221 1  23332  1223333333222


Q ss_pred             --CCCCEEEEecCCh--------------------------hhHHHHHHhhhcCCceEEEecccC
Q 025101          141 --GGADYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       141 --~~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                        +++|+++.+.|..                          ..++.++..+..+ |+++.++...
T Consensus       125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~iv~iSS~~  188 (294)
T PRK07985        125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKG-ASIITTSSIQ  188 (294)
T ss_pred             HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcC-CEEEEECCch
Confidence              2699999887631                          0223444445567 8998887543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.75  E-value=0.021  Score=49.50  Aligned_cols=101  Identities=20%  Similarity=0.295  Sum_probs=64.1

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHH----hcCCce--EEcCCCCCCccHHHHHHH
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFGVTE--FVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~----~~g~~~--vi~~~~~~~~~~~~~i~~  137 (258)
                      ...++++|++||=.|+|+ |--+..++...+ ..+|++++.++++.+.++    ++|.+.  ++..+.   .++    ..
T Consensus       231 ~~l~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da---~~l----~~  302 (431)
T PRK14903        231 LLMELEPGLRVLDTCAAP-GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA---ERL----TE  302 (431)
T ss_pred             HHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hhh----hh
Confidence            346788999999888764 555556666552 238999999999988765    466543  222111   111    11


Q ss_pred             hcCCCCCEEE-E--ecCChh-------------------------hHHHHHHhhhcCCceEEEec
Q 025101          138 MTDGGADYCF-E--CVGLAS-------------------------LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~~~d~v~-d--~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ...+.||.|+ |  |+|...                         .+..+++.++|+ |.++...
T Consensus       303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYsT  366 (431)
T PRK14903        303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG-GILLYST  366 (431)
T ss_pred             hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEE
Confidence            1223799998 4  544321                         266788999999 9977554

>PRK06720 hypothetical protein; Provisional

Probab=96.75  E-value=0.015  Score=43.59  Aligned_cols=39  Identities=26%  Similarity=0.223  Sum_probs=32.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  110 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~  110 (258)
                      +++.++|+|+ +++|...+..+...|+ +|+++++++++.+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~   54 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ   54 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            5789999987 7999999888888899 8999998776543

>PRK06914 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.0096  Score=48.32  Aligned_cols=77  Identities=16%  Similarity=0.170  Sum_probs=50.4

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC--c-eE--EcCCCCCCccHHHHHHHhcC-
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV--T-EF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~--~-~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      ++.+||+|+ |.+|..++..+...|+ +|+++++++++.+.+.+    .+.  . .+  .|..+  .+++.. +.+... 
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~-~~~~~~~   78 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD--QNSIHN-FQLVLKE   78 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC--HHHHHH-HHHHHHh
Confidence            568999987 8999999998888899 89999988776554422    221  1 12  23333  123333 444322 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|+++.+.|.
T Consensus        79 ~~~id~vv~~ag~   91 (280)
T PRK06914         79 IGRIDLLVNNAGY   91 (280)
T ss_pred             cCCeeEEEECCcc
Confidence             268999998764

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.73  E-value=0.0094  Score=47.74  Aligned_cols=78  Identities=21%  Similarity=0.267  Sum_probs=49.2

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h----cCCc--eEE--cCCCCCCccHHHHHHHhcC-
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R----FGVT--EFV--NSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~----~g~~--~vi--~~~~~~~~~~~~~i~~~~~-  140 (258)
                      ++++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+. +    .+..  .++  |..+  .+++...+.+... 
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~   78 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS--EQSVLALSRGVDEI   78 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC--HHHHHHHHHHHHHH
Confidence            568999987 8999999998888899 8999998876654332 1    2211  122  2222  1222222333221 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|.++.+.|.
T Consensus        79 ~~~id~vv~~ag~   91 (259)
T PRK12384         79 FGRVDLLVYNAGI   91 (259)
T ss_pred             cCCCCEEEECCCc
Confidence             379999998873

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.73  E-value=0.015  Score=45.86  Aligned_cols=78  Identities=15%  Similarity=0.098  Sum_probs=50.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHhcCCce-EEcCCCCCCccHHHHHHHhcC--CCCCEE
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF-EIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYC  146 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~-~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~~~d~v  146 (258)
                      ++++||+|+ |++|..+++.+...|+ +|+++++++++. +.+++.++.. ..|..+  .++....+.+...  +++|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQCIQADFST--NAGIMAFIDELKQHTDGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCEEEEcCCCC--HHHHHHHHHHHHhhCCCccEE
Confidence            468999987 8999999998888899 899998876543 3444455421 223332  1233333333322  269999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      +.+.|.
T Consensus        79 v~~ag~   84 (236)
T PRK06483         79 IHNASD   84 (236)
T ss_pred             EECCcc
Confidence            998874

>PRK09242 tropinone reductase; Provisional

Probab=96.73  E-value=0.012  Score=47.14  Aligned_cols=79  Identities=22%  Similarity=0.184  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----c--CCce-E--EcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F--GVTE-F--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~--g~~~-v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      .|++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+.+    .  +... .  .|..+  .+++...+.+...
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   84 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSD--DEDRRAILDWVED   84 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4789999987 8999999999988999 89999988876554322    1  2211 1  23322  1222222322221


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|+++.+.|.
T Consensus        85 ~~g~id~li~~ag~   98 (257)
T PRK09242         85 HWDGLHILVNNAGG   98 (257)
T ss_pred             HcCCCCEEEECCCC
Confidence              379999998874

>PRK07574 formate dehydrogenase; Provisional

Probab=96.73  E-value=0.027  Score=47.91  Aligned_cols=46  Identities=30%  Similarity=0.360  Sum_probs=37.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  117 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~  117 (258)
                      .|.+|.|+|.|.+|+.+++.++.+|. +|++.+++....+..+++|+
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g~  236 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGL  236 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcCc
Confidence            46789999999999999999999999 99999987644444444543

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.72  E-value=0.011  Score=47.02  Aligned_cols=78  Identities=22%  Similarity=0.215  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-eEE--cCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  140 (258)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+.    +.+.. .++  |..+  .+.+.+.+.+...  
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD--RDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4688999987 8999999998888899 8999988876654432    22322 222  2222  1223333333221  


Q ss_pred             CCCCEEEEecC
Q 025101          141 GGADYCFECVG  151 (258)
Q Consensus       141 ~~~d~v~d~~g  151 (258)
                      +++|++|.+.|
T Consensus        79 ~~~d~vi~~ag   89 (250)
T TIGR03206        79 GPVDVLVNNAG   89 (250)
T ss_pred             CCCCEEEECCC
Confidence            26899999887

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK01581 speE spermidine synthase; Validated

Probab=96.72  E-value=0.038  Score=46.30  Aligned_cols=102  Identities=13%  Similarity=0.077  Sum_probs=64.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC-c----eEEcCCCC--CCccHHHHHHHhcCCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-T----EFVNSKNC--GDKSVSQIIIDMTDGG  142 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~-~----~vi~~~~~--~~~~~~~~i~~~~~~~  142 (258)
                      ...++|||+|+| .|.++..+++..+..+|++++.+++-.+.++++.. .    ..++....  -..+..+.+.+ .++.
T Consensus       149 ~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~~~~  226 (374)
T PRK01581        149 IDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-PSSL  226 (374)
T ss_pred             CCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-cCCC
Confidence            445799999976 47777888887665699999999999998886310 0    00000000  00334444543 2337


Q ss_pred             CCEEE-EecCC----------hhhHHHHHHhhhcCCceEEEec
Q 025101          143 ADYCF-ECVGL----------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       143 ~d~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ||+|| |....          ...+..+.+.|+|+ |.++.-.
T Consensus       227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs  268 (374)
T PRK01581        227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTED-GAFVCQS  268 (374)
T ss_pred             ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC-cEEEEec
Confidence            99998 53211          12367888999999 9987553

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.72  E-value=0.011  Score=47.95  Aligned_cols=78  Identities=26%  Similarity=0.262  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---hcCCc-eE--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K---RFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~---~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      ++++++|+|+ |++|+++++.+...|+ +|+++++++++.+.+ +   +.+.. ..  .|..+  .+++...+.+...  
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   85 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLD--KESLEQARQQILEDF   85 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4789999986 8999999999888999 899999887655433 2   23322 11  23322  1222222332221  


Q ss_pred             CCCCEEEEecC
Q 025101          141 GGADYCFECVG  151 (258)
Q Consensus       141 ~~~d~v~d~~g  151 (258)
                      +.+|++|.+.|
T Consensus        86 g~id~li~~ag   96 (278)
T PRK08277         86 GPCDILINGAG   96 (278)
T ss_pred             CCCCEEEECCC
Confidence            37999999877

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.71  E-value=0.02  Score=42.81  Aligned_cols=93  Identities=13%  Similarity=0.242  Sum_probs=62.0

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC--ceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      +|.|+|+ |-+|...++=|+.+|- .|++++|+++|....+..-+  ..++|...     +.+.+   .  ++|+||++.
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~~~-----~a~~l---~--g~DaVIsA~   70 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDLTS-----LASDL---A--GHDAVISAF   70 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccChhh-----hHhhh---c--CCceEEEec
Confidence            6789997 9999999999999998 89999999988865422110  11332221     11111   1  799999998


Q ss_pred             CCh--h-------hHHHHHHhhhcC-CceEEEecccC
Q 025101          151 GLA--S-------LVQEAYACCRKG-WGKTIVLGVDQ  177 (258)
Q Consensus       151 g~~--~-------~~~~~~~~l~~~-~G~~v~~g~~~  177 (258)
                      |..  .       ..+.++..++.. .-|++.+|..+
T Consensus        71 ~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG  107 (211)
T COG2910          71 GAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG  107 (211)
T ss_pred             cCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence            864  1       234466777763 24788887543

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.71  E-value=0.011  Score=47.95  Aligned_cols=78  Identities=19%  Similarity=0.331  Sum_probs=47.9

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHH-HhcCCceE--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIG-KRFGVTEF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~~~---~~~~~-~~~g~~~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      .|+++||+|+   +++|.++++.+...|+ +|+.+.++++   +.+.+ ++++....  .|-.+  .++..+.+.+... 
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   85 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTD--EASIDAVFETLEKK   85 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCC--HHHHHHHHHHHHHh
Confidence            5789999986   5899999988888999 8988876642   22222 33453222  23222  1223333333222 


Q ss_pred             -CCCCEEEEecC
Q 025101          141 -GGADYCFECVG  151 (258)
Q Consensus       141 -~~~d~v~d~~g  151 (258)
                       +.+|+++++.|
T Consensus        86 ~g~iD~lv~nAG   97 (272)
T PRK08159         86 WGKLDFVVHAIG   97 (272)
T ss_pred             cCCCcEEEECCc
Confidence             36999999876

>PRK09186 flagellin modification protein A; Provisional

Probab=96.71  E-value=0.01  Score=47.37  Aligned_cols=78  Identities=21%  Similarity=0.337  Sum_probs=50.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc----CCce----EEcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF----GVTE----FVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~----g~~~----vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      +++++||+|+ |++|..++..+...|+ +|+++++++++.+.+ +++    +...    ..|..+  ++++.+.+.+...
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~   79 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD--QESLEEFLSKSAE   79 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC--HHHHHHHHHHHHH
Confidence            4789999987 8999999998888999 899999887775443 222    2211    123333  1223333333222


Q ss_pred             --CCCCEEEEecC
Q 025101          141 --GGADYCFECVG  151 (258)
Q Consensus       141 --~~~d~v~d~~g  151 (258)
                        +++|++|.+.+
T Consensus        80 ~~~~id~vi~~A~   92 (256)
T PRK09186         80 KYGKIDGAVNCAY   92 (256)
T ss_pred             HcCCccEEEECCc
Confidence              26999998875

>PLN00203 glutamyl-tRNA reductase

Probab=96.70  E-value=0.0089  Score=52.77  Aligned_cols=73  Identities=18%  Similarity=0.276  Sum_probs=52.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcC-Cc-eEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG-VT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g-~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      +.+|+|+|+|.+|.++++.+...|+.+|+++.++.++.+.+. +++ .. .+...     ++..+.+     .+.|+||.
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~-----~dl~~al-----~~aDVVIs  335 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPL-----DEMLACA-----AEADVVFT  335 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecH-----hhHHHHH-----hcCCEEEE
Confidence            689999999999999999999899878999999988876554 453 22 11111     1222222     16999999


Q ss_pred             ecCChh
Q 025101          149 CVGLAS  154 (258)
Q Consensus       149 ~~g~~~  154 (258)
                      |++.+.
T Consensus       336 AT~s~~  341 (519)
T PLN00203        336 STSSET  341 (519)
T ss_pred             ccCCCC
Confidence            987644

>PRK08317 hypothetical protein; Provisional

Probab=96.70  E-value=0.023  Score=44.74  Aligned_cols=101  Identities=28%  Similarity=0.390  Sum_probs=67.8

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhc----CCc-eEEcCCCCCCccHHHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF----GVT-EFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~~~~i~~  137 (258)
                      .+...+.++++||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.    +.. .++....   .+.     .
T Consensus        12 ~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~-----~   82 (241)
T PRK08317         12 FELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGL-----P   82 (241)
T ss_pred             HHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccC-----C
Confidence            4566788899999999976 888888888763 23899999999888877664    111 1221111   110     1


Q ss_pred             hcCCCCCEEEEec-----CC-hhhHHHHHHhhhcCCceEEEec
Q 025101          138 MTDGGADYCFECV-----GL-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~~~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ...+.+|+|+-..     .. ...+..+.+.++++ |.++...
T Consensus        83 ~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  124 (241)
T PRK08317         83 FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG-GRVVVLD  124 (241)
T ss_pred             CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCC-cEEEEEe
Confidence            1223789987532     22 33578999999999 9988765

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.70  E-value=0.014  Score=46.66  Aligned_cols=79  Identities=19%  Similarity=0.337  Sum_probs=48.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHhcCCc-eE--EcCCCCCCccHHHHHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~--~~~~~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~~  142 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+.+++++..  .+.+++.+.. ..  .|-.+  .+++.+.+.+...  +.
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~   85 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRK--IDGIPALLERAVAEFGH   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHhCC
Confidence            4789999987 8999999999988999 88887665422  2333444422 11  22222  1233333333221  27


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|.+.|.
T Consensus        86 ~D~li~~Ag~   95 (253)
T PRK08993         86 IDILVNNAGL   95 (253)
T ss_pred             CCEEEECCCC
Confidence            9999998874

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.70  E-value=0.013  Score=47.18  Aligned_cols=78  Identities=15%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             CCCEEEEEccC---HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceE--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGLG---SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~g---~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +|+++||+|++   ++|.++++.+...|+ +|+.+++++...+.+++    .+....  .|-.+  .+++.+.+.+... 
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   81 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAE--DASIDAMFAELGKV   81 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCC--HHHHHHHHHHHHhh
Confidence            57899999863   799998888888899 88888776422222322    232122  23332  1233333333322 


Q ss_pred             -CCCCEEEEecC
Q 025101          141 -GGADYCFECVG  151 (258)
Q Consensus       141 -~~~d~v~d~~g  151 (258)
                       +.+|++|++.|
T Consensus        82 ~g~iD~linnAg   93 (262)
T PRK07984         82 WPKFDGFVHSIG   93 (262)
T ss_pred             cCCCCEEEECCc
Confidence             36999999887

>PRK08328 hypothetical protein; Provisional

Probab=96.70  E-value=0.012  Score=46.52  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .+.+|+|+|+|++|..++..+...|.++++.+|..
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999999888888743

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.69  E-value=0.045  Score=44.19  Aligned_cols=101  Identities=14%  Similarity=0.172  Sum_probs=62.8

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHH----hcCCceEEcCCCCCCccHHHHHHHhcC
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      ...+++|++||=.|+|+ |..++.++..++ ...|++++.++++.+.++    .+|...+.-...    +.. .+... .
T Consensus        66 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~----D~~-~~~~~-~  138 (264)
T TIGR00446        66 ALEPDPPERVLDMAAAP-GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNF----DGR-VFGAA-V  138 (264)
T ss_pred             HhCCCCcCEEEEECCCc-hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecC----CHH-Hhhhh-c
Confidence            45678999999888764 555555555543 238999999999987664    466543221111    111 11111 1


Q ss_pred             CCCCEEE-E--ecCCh-------------------------hhHHHHHHhhhcCCceEEEec
Q 025101          141 GGADYCF-E--CVGLA-------------------------SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~~~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.||.|+ |  |+|..                         ..+..+++.++++ |+++...
T Consensus       139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg-G~lvYst  199 (264)
T TIGR00446       139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG-GVLVYST  199 (264)
T ss_pred             cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            2699997 5  55531                         2467888899999 9987543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.68  E-value=0.032  Score=44.80  Aligned_cols=94  Identities=22%  Similarity=0.267  Sum_probs=62.5

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHhcCCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      .++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++    .|..   .++..      +.. .+.....+.
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~------d~~-~l~~~~~~~  112 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC------AAQ-DIAQHLETP  112 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEc------CHH-HHhhhcCCC
Confidence            4567999999874 7788888875 77 89999999988887765    3321   12211      121 122222347


Q ss_pred             CCEEEEec-----CC-hhhHHHHHHhhhcCCceEEEec
Q 025101          143 ADYCFECV-----GL-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       143 ~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +|+|+-..     .. ...+..+.+.|+|+ |.++.+-
T Consensus       113 fD~V~~~~vl~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  149 (255)
T PRK11036        113 VDLILFHAVLEWVADPKSVLQTLWSVLRPG-GALSLMF  149 (255)
T ss_pred             CCEEEehhHHHhhCCHHHHHHHHHHHcCCC-eEEEEEE
Confidence            99998432     22 23478999999999 9997653

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=96.68  E-value=0.013  Score=46.81  Aligned_cols=79  Identities=27%  Similarity=0.405  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCc-eEE--cCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      .++++||+|+ |++|..+++.+...|+ +|+.++++.++.+.+.+ .+.. ..+  |-.+  .++....+.+...  +.+
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTR--QDSIDRIVAAAVERFGGI   81 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            3678999987 8999999999988899 89999998877655433 3321 122  2222  1223333332211  269


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |+++.+.|.
T Consensus        82 d~li~~ag~   90 (257)
T PRK07067         82 DILFNNAAL   90 (257)
T ss_pred             CEEEECCCc
Confidence            999988763

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.013  Score=47.10  Aligned_cols=79  Identities=24%  Similarity=0.299  Sum_probs=49.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---cCCce-E--EcCCCCCCccHHHHHHHhc--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVTE-F--VNSKNCGDKSVSQIIIDMT--DG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~---~g~~~-v--i~~~~~~~~~~~~~i~~~~--~~  141 (258)
                      ++++++|+|+ |++|..+++.+...|+ +|+.++++++..+..++   .+... .  .|..+  .+++...+.+..  -+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRD--PASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            4689999986 8999999998888899 89999888754333332   23221 1  23322  122222222221  13


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      .+|++|.+.|.
T Consensus        82 ~id~vi~~ag~   92 (263)
T PRK08226         82 RIDILVNNAGV   92 (263)
T ss_pred             CCCEEEECCCc
Confidence            68999998873

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=96.68  E-value=0.05  Score=43.48  Aligned_cols=99  Identities=14%  Similarity=0.226  Sum_probs=63.7

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC-ceEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      +.....++.+||-+|+|. |..+..+++ .|. +|++++.+++..+.+++... ..++..+-   +++     ...++.|
T Consensus        36 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~d~---~~~-----~~~~~~f  104 (251)
T PRK10258         36 AMLPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLAGDI---ESL-----PLATATF  104 (251)
T ss_pred             HhcCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEEcCc---ccC-----cCCCCcE
Confidence            334445678999999875 666655554 576 89999999998888877542 22221111   111     1112269


Q ss_pred             CEEEEecC------ChhhHHHHHHhhhcCCceEEEecc
Q 025101          144 DYCFECVG------LASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       144 d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      |+|+....      ....+.++.+.++|+ |.++....
T Consensus       105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~g-G~l~~~~~  141 (251)
T PRK10258        105 DLAWSNLAVQWCGNLSTALRELYRVVRPG-GVVAFTTL  141 (251)
T ss_pred             EEEEECchhhhcCCHHHHHHHHHHHcCCC-eEEEEEeC
Confidence            99986432      123578889999999 99887653

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.67  E-value=0.026  Score=46.23  Aligned_cols=70  Identities=20%  Similarity=0.175  Sum_probs=49.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCCh
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+...        .+..+.+.     ..|+||.|+...
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~~~-----~aDivi~~vp~~   66 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGAVTA--------ETARQVTE-----QADVIFTMVPDS   66 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCccc--------CCHHHHHh-----cCCEEEEecCCH
Confidence            37789999999988888888898 89999999999888877775311        11222221     478888887765


Q ss_pred             hhHH
Q 025101          154 SLVQ  157 (258)
Q Consensus       154 ~~~~  157 (258)
                      ..+.
T Consensus        67 ~~~~   70 (291)
T TIGR01505        67 PQVE   70 (291)
T ss_pred             HHHH
Confidence            4333

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK06484 short chain dehydrogenase; Validated

Probab=96.67  E-value=0.0096  Score=52.96  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=53.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce---EEcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE---FVNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      +|+++||+|+ +++|.++++.+...|+ +|+.++++.++.+.+ ++++...   ..|..+  .+++.+.+.+...  +++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSD--EAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence            5789999987 8999999999998999 999999988876544 4455332   234333  1233333333221  369


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|++.|.
T Consensus        81 D~li~nag~   89 (520)
T PRK06484         81 DVLVNNAGV   89 (520)
T ss_pred             CEEEECCCc
Confidence            999998764

>PLN02244 tocopherol O-methyltransferase

Probab=96.67  E-value=0.011  Score=49.50  Aligned_cols=96  Identities=21%  Similarity=0.243  Sum_probs=63.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHhcCCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      +++++||-+|+|. |..+..+++..|+ +|++++.++...+.+++    .|..   .++..+-   .++     ....+.
T Consensus       117 ~~~~~VLDiGCG~-G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~---~~~-----~~~~~~  186 (340)
T PLN02244        117 KRPKRIVDVGCGI-GGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA---LNQ-----PFEDGQ  186 (340)
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc---ccC-----CCCCCC
Confidence            6788999999874 7777888887788 99999999987776654    2321   1111111   010     112237


Q ss_pred             CCEEEEecC-----C-hhhHHHHHHhhhcCCceEEEeccc
Q 025101          143 ADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       143 ~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ||+|+-...     . ...+.++.+.|+|+ |++++....
T Consensus       187 FD~V~s~~~~~h~~d~~~~l~e~~rvLkpG-G~lvi~~~~  225 (340)
T PLN02244        187 FDLVWSMESGEHMPDKRKFVQELARVAAPG-GRIIIVTWC  225 (340)
T ss_pred             ccEEEECCchhccCCHHHHHHHHHHHcCCC-cEEEEEEec
Confidence            999985322     1 23578899999999 999876543

>PLN03139 formate dehydrogenase; Provisional

Probab=96.67  E-value=0.025  Score=48.03  Aligned_cols=46  Identities=24%  Similarity=0.294  Sum_probs=37.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  117 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~  117 (258)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++....+..++.|+
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~  243 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGA  243 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCc
Confidence            57899999999999999999999999 89999887644444445554

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.66  E-value=0.014  Score=46.80  Aligned_cols=78  Identities=18%  Similarity=0.192  Sum_probs=49.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCC--c-eE--EcCCCCCCccHHHHHHHhcC--CC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV--T-EF--VNSKNCGDKSVSQIIIDMTD--GG  142 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~--~-~v--i~~~~~~~~~~~~~i~~~~~--~~  142 (258)
                      +.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+ +..  . ..  .|..+  .+++.+.+.+...  +.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~g~   78 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRD--ADALAAAAADFIAAHGL   78 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC--HHHHHHHHHHHHHhCCC
Confidence            468999986 8999999888888899 89999998877654432 321  1 11  23332  1233333333222  25


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|+++.+.|.
T Consensus        79 id~lv~~ag~   88 (257)
T PRK07024         79 PDVVIANAGI   88 (257)
T ss_pred             CCEEEECCCc
Confidence            8999998763

>PLN02253 xanthoxin dehydrogenase

Probab=96.66  E-value=0.011  Score=48.04  Aligned_cols=79  Identities=20%  Similarity=0.225  Sum_probs=49.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC--c-e--EEcCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--T-E--FVNSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~--~-~--vi~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.  . .  ..|..+  .+++.+.+.....  +
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~g   93 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV--EDDVSRAVDFTVDKFG   93 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            4789999986 8999999888888899 899998876654433 33321  1 1  223333  1223232332221  3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|++|.+.|.
T Consensus        94 ~id~li~~Ag~  104 (280)
T PLN02253         94 TLDIMVNNAGL  104 (280)
T ss_pred             CCCEEEECCCc
Confidence            69999998763

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.65  E-value=0.012  Score=48.85  Aligned_cols=78  Identities=21%  Similarity=0.198  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC---Cc-eE--EcCCCCCCccHHHHHHHhc--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG---VT-EF--VNSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g---~~-~v--i~~~~~~~~~~~~~i~~~~--~  140 (258)
                      ++++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+ +++.   .. .+  .|..+  .+++...+.+..  .
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   81 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD--LDSVRRFVDDFRALG   81 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC--HHHHHHHHHHHHHhC
Confidence            4788999986 8999999988888898 899999888776543 3332   11 11  23332  122222222221  2


Q ss_pred             CCCCEEEEecC
Q 025101          141 GGADYCFECVG  151 (258)
Q Consensus       141 ~~~d~v~d~~g  151 (258)
                      +.+|++|++.|
T Consensus        82 ~~iD~li~nAg   92 (322)
T PRK07453         82 KPLDALVCNAA   92 (322)
T ss_pred             CCccEEEECCc
Confidence            26999999877

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.013  Score=47.55  Aligned_cols=77  Identities=17%  Similarity=0.192  Sum_probs=50.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCc-e--EEcCCCCCCccHHHHHHHhcC--CCCCE
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-E--FVNSKNCGDKSVSQIIIDMTD--GGADY  145 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~--vi~~~~~~~~~~~~~i~~~~~--~~~d~  145 (258)
                      +++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+++ .+.. .  ..|..+  .+.+.+.+.+...  +++|+
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   79 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTD--SAAVRAVVDRAFAALGRIDV   79 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            57999986 9999999888888899 89999998877666544 2321 1  123333  1223333333221  36899


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      +|.+.|.
T Consensus        80 vi~~ag~   86 (276)
T PRK06482         80 VVSNAGY   86 (276)
T ss_pred             EEECCCC
Confidence            9998874

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.65  E-value=0.016  Score=46.31  Aligned_cols=79  Identities=27%  Similarity=0.434  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-eE--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      .++++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+    ++.+.. ..  .|..+  .+++.+.+.....  
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   84 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTH--KQEVEAAIEHIEKDI   84 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCC--HHHHHHHHHHHHHhc
Confidence            4789999986 8999999988888899 899999887665433    222322 12  23322  1222222222211  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|+++.+.|.
T Consensus        85 ~~id~vi~~ag~   96 (254)
T PRK08085         85 GPIDVLINNAGI   96 (254)
T ss_pred             CCCCEEEECCCc
Confidence            269999998874

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.052  Score=43.23  Aligned_cols=106  Identities=19%  Similarity=0.164  Sum_probs=60.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEc-CCcchHHH-H---HhcCCc-eE--EcCCCC-CCccHHHHHHHh--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEI-G---KRFGVT-EF--VNSKNC-GDKSVSQIIIDM--  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~-~~~~~~~~-~---~~~g~~-~v--i~~~~~-~~~~~~~~i~~~--  138 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++. +++++.+. .   ++.+.. ..  .|..+. +...+.+.+.+.  
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   81 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence            4689999986 8999999999988999 787764 44444332 2   222322 11  122220 011122233321  


Q ss_pred             --cC-CCCCEEEEecCChh-------------------------hHHHHHHhhhcCCceEEEecccCC
Q 025101          139 --TD-GGADYCFECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       139 --~~-~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                        .+ +++|+++.+.|...                         ..+.++..+... |+++.++....
T Consensus        82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-g~iv~isS~~~  148 (252)
T PRK12747         82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN-SRIINISSAAT  148 (252)
T ss_pred             hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcC-CeEEEECCccc
Confidence              12 26999999887310                         122345556667 89998886543

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.65  E-value=0.013  Score=46.65  Aligned_cols=76  Identities=16%  Similarity=0.295  Sum_probs=50.1

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCce-E--EcCCCCCCccHHHHHHHhcC--CCCCEE
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGADYC  146 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~-v--i~~~~~~~~~~~~~i~~~~~--~~~d~v  146 (258)
                      +++|+|+ |++|..+++.+...|+ +|+++++++++.+.+.+ ++... .  .|..+  .+++.+.+.+...  +++|.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~~~id~v   78 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN--RAAIEEMLASLPAEWRNIDVL   78 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            6899986 8999999999888899 89999998877665533 44321 1  23332  1223333333222  269999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      +.+.|.
T Consensus        79 i~~ag~   84 (248)
T PRK10538         79 VNNAGL   84 (248)
T ss_pred             EECCCc
Confidence            988764

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.015  Score=46.22  Aligned_cols=77  Identities=18%  Similarity=0.310  Sum_probs=49.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----c--CCc-eE--EcCCCCCCccHHHHHHHhcC-
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F--GVT-EF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~--g~~-~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+.+    .  +.. .+  .|..+  .+++.+.+.+... 
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   78 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVND--HDQVFEVFAEFRDE   78 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            568999986 8999998888877898 89999998877654422    1  221 12  23333  1233333333222 


Q ss_pred             -CCCCEEEEecC
Q 025101          141 -GGADYCFECVG  151 (258)
Q Consensus       141 -~~~d~v~d~~g  151 (258)
                       +++|++|.+.|
T Consensus        79 ~~~id~vi~~ag   90 (248)
T PRK08251         79 LGGLDRVIVNAG   90 (248)
T ss_pred             cCCCCEEEECCC
Confidence             26999999886

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.014  Score=48.28  Aligned_cols=35  Identities=17%  Similarity=0.210  Sum_probs=30.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      +|+++||+|+ +++|.++++.+...|+ +|++++++.
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~   42 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRST   42 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeccc
Confidence            5789999987 7999999999988999 899988863

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.013  Score=47.44  Aligned_cols=78  Identities=17%  Similarity=0.171  Sum_probs=50.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCc-eEE--cCCCCCCccHHHHHHHhcC--CCCC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGAD  144 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~~~d  144 (258)
                      ++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+ ++.. .++  |..+  .+++...+.....  +++|
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~d   79 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTD--RAAVFAAVETAVEHFGRLD   79 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCC--HHHHHHHHHHHHHHcCCCC
Confidence            468999986 8999999888888898 89999998877655443 3321 222  3222  1223333333221  2789


Q ss_pred             EEEEecCC
Q 025101          145 YCFECVGL  152 (258)
Q Consensus       145 ~v~d~~g~  152 (258)
                      .+|.+.|.
T Consensus        80 ~vi~~ag~   87 (275)
T PRK08263         80 IVVNNAGY   87 (275)
T ss_pred             EEEECCCC
Confidence            99998874

>PRK04266 fibrillarin; Provisional

Probab=96.64  E-value=0.038  Score=43.47  Aligned_cols=102  Identities=13%  Similarity=0.136  Sum_probs=61.9

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      +...+++|++||=.|+|+ |..+..+++..+..+|++++.+++..+.+.+    ...-..+..+.   .+. ...... .
T Consensus        66 ~~l~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~---~~~-~~~~~l-~  139 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADA---RKP-ERYAHV-V  139 (226)
T ss_pred             hhCCCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCC---CCc-chhhhc-c
Confidence            346788999999998864 5566667776653389999999977664432    21112221111   110 000111 1


Q ss_pred             CCCCEEEEecCCh----hhHHHHHHhhhcCCceEEEe
Q 025101          141 GGADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       141 ~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~  173 (258)
                      +.+|+|+--...+    ..+..+.+.|+|+ |+++..
T Consensus       140 ~~~D~i~~d~~~p~~~~~~L~~~~r~LKpG-G~lvI~  175 (226)
T PRK04266        140 EKVDVIYQDVAQPNQAEIAIDNAEFFLKDG-GYLLLA  175 (226)
T ss_pred             ccCCEEEECCCChhHHHHHHHHHHHhcCCC-cEEEEE
Confidence            2599999433332    2367888899999 998874

>PLN02823 spermine synthase

Probab=96.63  E-value=0.023  Score=47.44  Aligned_cols=100  Identities=17%  Similarity=0.114  Sum_probs=62.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC-c-eEEcCCCC--CCccHHHHHHHhcCCCCCEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-T-EFVNSKNC--GDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~-~-~vi~~~~~--~~~~~~~~i~~~~~~~~d~v  146 (258)
                      ..++|||+|+|. |..+.++++..+..+|++++.+++-.+.++++-. . ..++....  -..|-...+++ .++.+|+|
T Consensus       103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~~~yDvI  180 (336)
T PLN02823        103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-RDEKFDVI  180 (336)
T ss_pred             CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-CCCCccEE
Confidence            457899999864 6667788887766689999999999999887421 1 11111100  00233344433 33479999


Q ss_pred             E-EecC----C-------hhhHH-HHHHhhhcCCceEEEe
Q 025101          147 F-ECVG----L-------ASLVQ-EAYACCRKGWGKTIVL  173 (258)
Q Consensus       147 ~-d~~g----~-------~~~~~-~~~~~l~~~~G~~v~~  173 (258)
                      | |...    +       ...++ .+.+.|+++ |.++.-
T Consensus       181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q  219 (336)
T PLN02823        181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG-GIFVTQ  219 (336)
T ss_pred             EecCCCccccCcchhhccHHHHHHHHHHhcCCC-cEEEEe
Confidence            8 6432    1       12244 678889999 987643

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.019  Score=45.54  Aligned_cols=76  Identities=20%  Similarity=0.170  Sum_probs=47.8

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h---c-CCc-eEE--cCCCCCCccHHHHHHHhcCCCC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R---F-GVT-EFV--NSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~---~-g~~-~vi--~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      ++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+. +   . +.. .++  |..+  .+++.+.+.+. ...+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~-~~~~   77 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILD--TASHAAFLDSL-PALP   77 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC--hHHHHHHHHHH-hhcC
Confidence            57899986 9999999988888899 8999999887654432 1   1 111 122  3222  12233333322 2257


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |+++.+.|.
T Consensus        78 d~vv~~ag~   86 (243)
T PRK07102         78 DIVLIAVGT   86 (243)
T ss_pred             CEEEECCcC
Confidence            999987764

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.62  E-value=0.016  Score=46.34  Aligned_cols=79  Identities=18%  Similarity=0.298  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-eE--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +|++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+.. ..  .|..+  .+++...+.+...  
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   86 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD--EEAVAAAFARIDAEH   86 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            5889999987 8999999988888899 899999987664432    233422 12  23333  1223333333221  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|.+|.+.|.
T Consensus        87 ~~id~vi~~ag~   98 (256)
T PRK06124         87 GRLDILVNNVGA   98 (256)
T ss_pred             CCCCEEEECCCC
Confidence            268999988874

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.028  Score=43.88  Aligned_cols=72  Identities=15%  Similarity=0.123  Sum_probs=46.0

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEE--cCCCCCCccHHHHHHHhcCC--CCCEE
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFV--NSKNCGDKSVSQIIIDMTDG--GADYC  146 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi--~~~~~~~~~~~~~i~~~~~~--~~d~v  146 (258)
                      +++||+|+ |.+|..++..+... . +|++++++.++.+.+.+ .....++  |..+   .+   .+.+...+  ++|.+
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~---~~---~~~~~~~~~~~id~v   75 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPVDLTD---PE---AIAAAVEQLGRLDVL   75 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEecCCCC---HH---HHHHHHHhcCCCCEE
Confidence            57999986 89999888777655 6 89999998877655443 2111222  2222   22   23332222  69999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |.+.|.
T Consensus        76 i~~ag~   81 (227)
T PRK08219         76 VHNAGV   81 (227)
T ss_pred             EECCCc
Confidence            998874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.62  E-value=0.02  Score=44.60  Aligned_cols=35  Identities=26%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      ...+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45789999999999999999988999889888876

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=96.62  E-value=0.03  Score=40.94  Aligned_cols=97  Identities=19%  Similarity=0.258  Sum_probs=62.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCC---CCccHHHHHHHhcCC-CCCEE
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC---GDKSVSQIIIDMTDG-GADYC  146 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~---~~~~~~~~i~~~~~~-~~d~v  146 (258)
                      ..+|+|.|. |++|.++++..|..++ -|..++-++...     .....+++.++.   +.+...+++.+...+ ++|.|
T Consensus         3 agrVivYGGkGALGSacv~~Fkanny-wV~siDl~eNe~-----Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav   76 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFFKANNY-WVLSIDLSENEQ-----ADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAV   76 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHHHhcCe-EEEEEeeccccc-----ccceEEecCCcchhHHHHHHHHHHHHhhcccccceE
Confidence            357899987 9999999999999999 788777665432     222234443330   112333444455555 89999


Q ss_pred             EEecCChh--------------------------hHHHHHHhhhcCCceEEEecc
Q 025101          147 FECVGLAS--------------------------LVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       147 ~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      |...|+-.                          ....+...++++ |-+-+-|-
T Consensus        77 ~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~G-GLL~LtGA  130 (236)
T KOG4022|consen   77 FCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPG-GLLQLTGA  130 (236)
T ss_pred             EEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCC-ceeeeccc
Confidence            98766511                          233455678888 88776663

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.011  Score=47.13  Aligned_cols=75  Identities=19%  Similarity=0.266  Sum_probs=48.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-e--EEcCCCCCCccHHHHHHHhcC--CCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-E--FVNSKNCGDKSVSQIIIDMTD--GGAD  144 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~--vi~~~~~~~~~~~~~i~~~~~--~~~d  144 (258)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++    ...+.. .  ..|..+  .+++.+.+.....  +.+|
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~----~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id   77 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE----TVDGRPAEFHAADVRD--PDQVAALVDAIVERHGRLD   77 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh----hhcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCCC
Confidence            4789999986 8999999998888899 89999987654    112211 1  223332  1223333322211  2689


Q ss_pred             EEEEecCC
Q 025101          145 YCFECVGL  152 (258)
Q Consensus       145 ~v~d~~g~  152 (258)
                      ++|.+.|.
T Consensus        78 ~vi~~ag~   85 (252)
T PRK07856         78 VLVNNAGG   85 (252)
T ss_pred             EEEECCCC
Confidence            99998873

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.61  E-value=0.052  Score=38.92  Aligned_cols=97  Identities=24%  Similarity=0.285  Sum_probs=56.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc-------------------chHHHH----HhcC-CceEEcCCCCC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-------------------EKFEIG----KRFG-VTEFVNSKNCG  127 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~-------------------~~~~~~----~~~g-~~~vi~~~~~~  127 (258)
                      ..+|+|.|+|++|..++..+...|..+++.+|...                   .|.+.+    +++. ..++.....  
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~--   79 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE--   79 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES--
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec--
Confidence            46899999999999999888888998888886532                   112222    2222 112222211  


Q ss_pred             CccH-HHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCce-EEEec
Q 025101          128 DKSV-SQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK-TIVLG  174 (258)
Q Consensus       128 ~~~~-~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~-~v~~g  174 (258)
                        .+ .+.+.++. .++|+||+|+.+...-..+.+.+... +. ++..+
T Consensus        80 --~~~~~~~~~~~-~~~d~vi~~~d~~~~~~~l~~~~~~~-~~p~i~~~  124 (135)
T PF00899_consen   80 --KIDEENIEELL-KDYDIVIDCVDSLAARLLLNEICREY-GIPFIDAG  124 (135)
T ss_dssp             --HCSHHHHHHHH-HTSSEEEEESSSHHHHHHHHHHHHHT-T-EEEEEE
T ss_pred             --ccccccccccc-cCCCEEEEecCCHHHHHHHHHHHHHc-CCCEEEEE
Confidence              11 12222222 26999999999877444555556555 54 44444

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN03075 nicotianamine synthase; Provisional

Probab=96.60  E-value=0.019  Score=46.82  Aligned_cols=99  Identities=14%  Similarity=0.130  Sum_probs=65.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcC-----CceEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFG-----VTEFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g-----~~~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      .+++|+-+|+|+.++.++.+++.+ ...+++.++.+++..+.+++.-     ...-+....   .+..+....  .++||
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~---~Da~~~~~~--l~~FD  197 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT---ADVMDVTES--LKEYD  197 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE---Cchhhcccc--cCCcC
Confidence            779999999999899888888654 3337999999999888877632     111112221   222221101  13799


Q ss_pred             EEEEec-------CChhhHHHHHHhhhcCCceEEEeccc
Q 025101          145 YCFECV-------GLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       145 ~v~d~~-------g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      +||-.+       .....+....+.++|+ |.++ ++..
T Consensus       198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPG-G~Lv-lr~~  234 (296)
T PLN03075        198 VVFLAALVGMDKEEKVKVIEHLGKHMAPG-ALLM-LRSA  234 (296)
T ss_pred             EEEEecccccccccHHHHHHHHHHhcCCC-cEEE-Eecc
Confidence            999543       2234688999999998 8876 4443

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.59  E-value=0.038  Score=44.80  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=62.1

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~-~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +|..+|.|.+|.-.++-+...|+ .|.+.++++++ .+.+++.|+...-        +..+...     ..|+||-++++
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~~~Ga~~a~--------s~~eaa~-----~aDvVitmv~~   67 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLAAAGATVAA--------SPAEAAA-----EADVVITMLPD   67 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHHHcCCcccC--------CHHHHHH-----hCCEEEEecCC
Confidence            57788999999998888888999 99999999999 8888888875331        1222222     57777777777


Q ss_pred             hhhHHHHH-------HhhhcCCceEEEecccC
Q 025101          153 ASLVQEAY-------ACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       153 ~~~~~~~~-------~~l~~~~G~~v~~g~~~  177 (258)
                      ...+...+       ..++++ ..+|.+++.+
T Consensus        68 ~~~V~~V~~g~~g~~~~~~~G-~i~IDmSTis   98 (286)
T COG2084          68 DAAVRAVLFGENGLLEGLKPG-AIVIDMSTIS   98 (286)
T ss_pred             HHHHHHHHhCccchhhcCCCC-CEEEECCCCC
Confidence            65454444       223355 6666666543

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.59  E-value=0.025  Score=45.89  Aligned_cols=98  Identities=13%  Similarity=0.161  Sum_probs=66.7

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCce-EE-cCCC-CCCccHHHHHHHhcCCCCCEEE-
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTE-FV-NSKN-CGDKSVSQIIIDMTDGGADYCF-  147 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~~-vi-~~~~-~~~~~~~~~i~~~~~~~~d~v~-  147 (258)
                      ++|||+|.|. |-.+-+++|+....++++++-+++-.+.++++ +... -. |.+- .-..+-.+.+++... ++|+|| 
T Consensus        78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~  155 (282)
T COG0421          78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIV  155 (282)
T ss_pred             CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC-cCCEEEE
Confidence            6999998764 66777888888777999999999989998873 3111 01 1111 011344555555443 799998 


Q ss_pred             EecCC---------hhhHHHHHHhhhcCCceEEEe
Q 025101          148 ECVGL---------ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       148 d~~g~---------~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      |++..         ..-.+.+-+.|+++ |.++.-
T Consensus       156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~-Gi~v~q  189 (282)
T COG0421         156 DSTDPVGPAEALFTEEFYEGCRRALKED-GIFVAQ  189 (282)
T ss_pred             cCCCCCCcccccCCHHHHHHHHHhcCCC-cEEEEe
Confidence            65543         34477889999999 988766

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.58  E-value=0.024  Score=45.26  Aligned_cols=74  Identities=19%  Similarity=0.206  Sum_probs=47.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHhcCCc-eEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      ++++++|+|+ |++|..+++.+...|+ +|+++++++ ++.+...+.... ...|..+   .+   .+.+.. +.+|++|
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~---~~~~~~-~~iDilV   84 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESNDESPNEWIKWECGK---EE---SLDKQL-ASLDVLI   84 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhccCCCeEEEeeCCC---HH---HHHHhc-CCCCEEE
Confidence            4689999987 8999999998888999 899988876 222221111111 1223332   22   233332 2699999


Q ss_pred             EecCC
Q 025101          148 ECVGL  152 (258)
Q Consensus       148 d~~g~  152 (258)
                      ++.|.
T Consensus        85 nnAG~   89 (245)
T PRK12367         85 LNHGI   89 (245)
T ss_pred             ECCcc
Confidence            98874

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=96.57  E-value=0.0083  Score=48.55  Aligned_cols=82  Identities=18%  Similarity=0.213  Sum_probs=53.7

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc------eEEcCCCC-CCccHHHHHHH
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT------EFVNSKNC-GDKSVSQIIID  137 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~------~vi~~~~~-~~~~~~~~i~~  137 (258)
                      -.|+.+||+|+ .++|.+.+..+...|+ +|+++.+++++.+..++    .+..      ...|..+. ..+++.+...+
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~   84 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE   84 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence            36789999986 7999999999999999 99999999988655432    2221      23333330 00112223333


Q ss_pred             hcCCCCCEEEEecCC
Q 025101          138 MTDGGADYCFECVGL  152 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~  152 (258)
                      ...|++|+.+++.|.
T Consensus        85 ~~~GkidiLvnnag~   99 (270)
T KOG0725|consen   85 KFFGKIDILVNNAGA   99 (270)
T ss_pred             HhCCCCCEEEEcCCc
Confidence            334579999998774

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.57  E-value=0.099  Score=36.20  Aligned_cols=92  Identities=20%  Similarity=0.138  Sum_probs=60.1

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChh
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS  154 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~  154 (258)
                      |+|.|.|.+|..+++.++..+. +|++++.++++.+.+++.|.. ++.-+-    .-.+.+++..-..++.++-++++..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~-~i~gd~----~~~~~l~~a~i~~a~~vv~~~~~d~   74 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE-VIYGDA----TDPEVLERAGIEKADAVVILTDDDE   74 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE-EEES-T----TSHHHHHHTTGGCESEEEEESSSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc-cccccc----hhhhHHhhcCccccCEEEEccCCHH
Confidence            5788999999999999998666 899999999999999988864 443322    2222333332227999998887755


Q ss_pred             hHHH---HHHhhhcCCceEEEe
Q 025101          155 LVQE---AYACCRKGWGKTIVL  173 (258)
Q Consensus       155 ~~~~---~~~~l~~~~G~~v~~  173 (258)
                      .-..   ..+.+.+. .+++..
T Consensus        75 ~n~~~~~~~r~~~~~-~~ii~~   95 (116)
T PF02254_consen   75 ENLLIALLARELNPD-IRIIAR   95 (116)
T ss_dssp             HHHHHHHHHHHHTTT-SEEEEE
T ss_pred             HHHHHHHHHHHHCCC-CeEEEE
Confidence            2222   22333444 565544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=96.57  E-value=0.053  Score=38.42  Aligned_cols=87  Identities=16%  Similarity=0.204  Sum_probs=53.6

Q ss_pred             EEEEcc-CHHHHHHHHHHHHcC--CCeEEEEcCCcchH---HHHHhcCCceEEcCCCCCCccHHHHH-------------
Q 025101           75 VVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKF---EIGKRFGVTEFVNSKNCGDKSVSQII-------------  135 (258)
Q Consensus        75 vlI~G~-g~~G~~a~~l~~~~g--~~~v~~~~~~~~~~---~~~~~~g~~~vi~~~~~~~~~~~~~i-------------  135 (258)
                      |.|+|+ |++|..++.+.+...  + +|+++.....-.   +.++++.+..+.-.++    +..+.+             
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~----~~~~~l~~~~~~~~~~~~v   75 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIADE----EAYEELKKALPSKGPGIEV   75 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESSH----HHHHHHHHHHHHTTSSSEE
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----HHHHHHHHHhhhcCCCCEE
Confidence            578897 999999999999886  6 787765443322   3456677766554433    222222             


Q ss_pred             -------HHhcCC-CCCEEEEecCChhhHHHHHHhhhcC
Q 025101          136 -------IDMTDG-GADYCFECVGLASLVQEAYACCRKG  166 (258)
Q Consensus       136 -------~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~  166 (258)
                             .++... .+|+|+.++.+...+...+..++.+
T Consensus        76 ~~G~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g  114 (129)
T PF02670_consen   76 LSGPEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAG  114 (129)
T ss_dssp             EESHHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTT
T ss_pred             EeChHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCC
Confidence                   233332 6888888776666677777777764

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.57  E-value=0.026  Score=44.10  Aligned_cols=93  Identities=13%  Similarity=0.075  Sum_probs=56.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      ++.+|||+|+|.+|.-=++.+...|+ +|++++..-. ....+.+.|.-..+ .++     +...  ++  .++++||-|
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el~~l~~~~~i~~~-~r~-----~~~~--dl--~g~~LViaA   92 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEFLDLKKYGNLKLI-KGN-----YDKE--FI--KDKHLIVIA   92 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHHHHHHhCCCEEEE-eCC-----CChH--Hh--CCCcEEEEC
Confidence            57899999999999887777777899 8888754321 22222233322222 222     1110  11  179999999


Q ss_pred             cCChhhHHHHH-HhhhcCCceEEEeccc
Q 025101          150 VGLASLVQEAY-ACCRKGWGKTIVLGVD  176 (258)
Q Consensus       150 ~g~~~~~~~~~-~~l~~~~G~~v~~g~~  176 (258)
                      ++.+. ++..+ ...+.. +.++.....
T Consensus        93 TdD~~-vN~~I~~~a~~~-~~lvn~vd~  118 (223)
T PRK05562         93 TDDEK-LNNKIRKHCDRL-YKLYIDCSD  118 (223)
T ss_pred             CCCHH-HHHHHHHHHHHc-CCeEEEcCC
Confidence            99988 55444 444455 666555433

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.57  E-value=0.016  Score=46.21  Aligned_cols=79  Identities=20%  Similarity=0.305  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-eE--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.    ..+.. .+  .|..+  .+++.+.+.....  
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   79 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD--EEAINAGIDYAVETF   79 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4679999986 9999999998888899 8999999887654432    22322 12  23332  1222222222221  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|++|.+.|.
T Consensus        80 ~~~d~vi~~a~~   91 (258)
T PRK12429         80 GGVDILVNNAGI   91 (258)
T ss_pred             CCCCEEEECCCC
Confidence            269999988863

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.56  E-value=0.029  Score=43.17  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=30.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .+.+|+|.|+|++|.-++..+...|.+++..+|..
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46789999999999999999999999888888654

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=96.55  E-value=0.046  Score=44.48  Aligned_cols=87  Identities=18%  Similarity=0.297  Sum_probs=56.7

Q ss_pred             EEEEEccCHHHHHH-HHHHHHcCCCeEEEE-cCCcch--HHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           74 TVVIFGLGSIGLAV-AEGARLCGATRIIGV-DVISEK--FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        74 ~vlI~G~g~~G~~a-~~l~~~~g~~~v~~~-~~~~~~--~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +|.|+|+|.+|... ..+.+..+. .+.++ +.++++  .++++++|.....+       ++...+.+   .++|+||++
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~-elvaV~d~d~es~~la~A~~~Gi~~~~~-------~~e~ll~~---~dIDaV~ia   71 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHL-EMVAMVGIDPESDGLARARELGVKTSAE-------GVDGLLAN---PDIDIVFDA   71 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCc-EEEEEEeCCcccHHHHHHHHCCCCEEEC-------CHHHHhcC---CCCCEEEEC
Confidence            68899999999855 566665566 66654 445543  45677888754431       22222221   279999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEe
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      ++.....+.+...+..  |+.++.
T Consensus        72 Tp~~~H~e~a~~al~a--Gk~VId   93 (285)
T TIGR03215        72 TSAKAHARHARLLAEL--GKIVID   93 (285)
T ss_pred             CCcHHHHHHHHHHHHc--CCEEEE
Confidence            9998877777777666  444434

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.54  E-value=0.041  Score=46.54  Aligned_cols=137  Identities=16%  Similarity=0.148  Sum_probs=76.7

Q ss_pred             ccchhhcchhhhhhhhhhhhhcCC-CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc-----------------
Q 025101           46 PNRACLLSCGVSTGVGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-----------------  107 (258)
Q Consensus        46 ~~~aa~~~~~~~ta~~~l~~~~~~-~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~-----------------  107 (258)
                      .++|......+.+- .++ +.... -+|.+|.|.|.|.+|+.+++.+...|+ +|++++.+..                 
T Consensus       182 r~~aTg~Gv~~~~~-~a~-~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g~i~~~~Gld~~~l~~~~  258 (411)
T COG0334         182 RSEATGYGVFYAIR-EAL-KALGDDLEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKGGIYDEDGLDVEALLELK  258 (411)
T ss_pred             CCcccceehHHHHH-HHH-HHcCCCcCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCCceecCCCCCHHHHHHHh
Confidence            34455555444433 333 33333 489999999999999999999998899 9999987776                 


Q ss_pred             -hHHHHHh-cCCceEEcCCCC--------CCccHHHHHHHhcCC--CCCEEEEecCChhhHHHHHHhhhcCCceEEEecc
Q 025101          108 -KFEIGKR-FGVTEFVNSKNC--------GDKSVSQIIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       108 -~~~~~~~-~g~~~vi~~~~~--------~~~~~~~~i~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                       +...+.+ .|+. .+...+.        -|..+...|...+-.  ...+|.+....+. -..+.+.+... |.++.-..
T Consensus       259 ~~~~~v~~~~ga~-~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak~V~EgAN~P~-t~eA~~i~~er-GIl~~PD~  335 (411)
T COG0334         259 ERRGSVAEYAGAE-YITNEELLEVDCDILIPCALENVITEDNADQLKAKIVVEGANGPT-TPEADEILLER-GILVVPDI  335 (411)
T ss_pred             hhhhhHHhhcCce-EccccccccccCcEEcccccccccchhhHHHhhhcEEEeccCCCC-CHHHHHHHHHC-CCEEcChh
Confidence             4444433 3432 2222210        000011111111111  4668888777776 35666666666 76655443


Q ss_pred             cCCCCceeechHH
Q 025101          176 DQPGSQLSLSSFE  188 (258)
Q Consensus       176 ~~~~~~~~~~~~~  188 (258)
                      ..+..-+...++.
T Consensus       336 laNAGGV~vS~~E  348 (411)
T COG0334         336 LANAGGVIVSYLE  348 (411)
T ss_pred             hccCcCeeeehHH
Confidence            3333333344443

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.54  E-value=0.019  Score=45.97  Aligned_cols=78  Identities=19%  Similarity=0.270  Sum_probs=48.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-eE--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      .|+++||+|+ |++|..+++.+...|+ +|++++++ ++.+.+    .+.+.. .+  .|..+  .+++...+.+...  
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   89 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTK--PESAEKVVKEALEEF   89 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            5789999987 8999999999988999 89988877 333222    233422 12  23332  1222222332221  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|+++.+.|.
T Consensus        90 g~id~li~~ag~  101 (258)
T PRK06935         90 GKIDILVNNAGT  101 (258)
T ss_pred             CCCCEEEECCCC
Confidence            268999998874

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.54  E-value=0.041  Score=45.94  Aligned_cols=96  Identities=17%  Similarity=0.071  Sum_probs=64.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEE-cCCCC-----CCccHHHHHHHhcCCCCCE
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNC-----GDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~-----~~~~~~~~i~~~~~~~~d~  145 (258)
                      ..+|.|+|+|.+|.+.+..+...|. +|.+.++++++.+.+.+.+..... +....     ...+..+.+     ...|+
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~-----~~aD~   77 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL-----AGADF   77 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH-----cCCCE
Confidence            3579999999999999888888898 899999988887766654211000 00000     001222222     26899


Q ss_pred             EEEecCChhhHHHHHHhhhcCCceEEEecc
Q 025101          146 CFECVGLASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       146 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ||-++.+.. +...++.++++ -.++.+..
T Consensus        78 Vi~~v~~~~-~~~v~~~l~~~-~~vi~~~~  105 (328)
T PRK14618         78 AVVAVPSKA-LRETLAGLPRA-LGYVSCAK  105 (328)
T ss_pred             EEEECchHH-HHHHHHhcCcC-CEEEEEee
Confidence            999999887 77787888876 66665643

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.53  E-value=0.018  Score=46.08  Aligned_cols=78  Identities=19%  Similarity=0.307  Sum_probs=49.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcC---Cce-EEcCCCCCCccHHHHHHHhcC--CCC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG---VTE-FVNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g---~~~-vi~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      ++++||+|+ |.+|..++..+...|+ +|+++++++++.+.+. ++.   +.. ..|..+  .+++...+.+...  +++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTD--AASLAAALANAAAERGPV   78 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            468999987 8999999888888898 8999999887765433 232   111 123332  1222233333221  269


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |+++.+.|.
T Consensus        79 d~vi~~ag~   87 (257)
T PRK07074         79 DVLVANAGA   87 (257)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.52  E-value=0.018  Score=45.74  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=49.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHhcCCc-eEE--cCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~----~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  140 (258)
                      .++++||+|+ |.+|..++..+...|+ +|++++++.++...    ++..+.. .++  |..+  .+++.+.+.+...  
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   81 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRD--RAALKAAVAAGVEDF   81 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4678999986 8999999988888899 89999998655433    2233322 122  2222  1223332322221  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|.+|.+.|.
T Consensus        82 ~~~d~vi~~ag~   93 (251)
T PRK12826         82 GRLDILVANAGI   93 (251)
T ss_pred             CCCCEEEECCCC
Confidence            268999988754

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.52  E-value=0.035  Score=45.15  Aligned_cols=77  Identities=17%  Similarity=0.256  Sum_probs=56.2

Q ss_pred             CCCCEEEEEccCH-HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           70 EVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        70 ~~g~~vlI~G~g~-~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      -.|++++|+|.|+ +|..++.++...|+ .|++..+..                      .++.+.+     ..+|+|++
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t----------------------~~L~~~~-----~~aDIvI~  208 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRT----------------------QNLPELV-----KQADIIVG  208 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCc----------------------hhHHHHh-----ccCCEEEE
Confidence            4789999999976 99999999999999 888765421                      1222222     16999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      ++|.+..+.  .+.++++ ..++.+|...
T Consensus       209 AtG~~~~v~--~~~lk~g-avViDvg~n~  234 (283)
T PRK14192        209 AVGKPELIK--KDWIKQG-AVVVDAGFHP  234 (283)
T ss_pred             ccCCCCcCC--HHHcCCC-CEEEEEEEee
Confidence            998766333  3568888 8888888543

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.52  E-value=0.028  Score=44.29  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=49.4

Q ss_pred             EEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           75 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        75 vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~--~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      |+|+|+ |.+|...++.+...+. +|.++.|++.+  .+.++..|+..+ ..+-    +-.+.+.+... ++|.||.+++
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~----~~~~~l~~al~-g~d~v~~~~~   73 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVV-EADY----DDPESLVAALK-GVDAVFSVTP   73 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEE-ES-T----T-HHHHHHHHT-TCSEEEEESS
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEe-eccc----CCHHHHHHHHc-CCceEEeecC
Confidence            789997 9999999999988888 89999988743  456677888543 2222    11233333333 7999999888

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02256 arogenate dehydrogenase

Probab=96.51  E-value=0.071  Score=43.98  Aligned_cols=96  Identities=13%  Similarity=0.173  Sum_probs=61.4

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      .+...-..+.+|.|+|.|.+|...+..++..|. +|+++++++. .+.++++|+.. .       .+..+.+    ....
T Consensus        28 ~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv~~-~-------~~~~e~~----~~~a   93 (304)
T PLN02256         28 QEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGVSF-F-------RDPDDFC----EEHP   93 (304)
T ss_pred             hHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCCee-e-------CCHHHHh----hCCC
Confidence            344444466789999999999999888888887 8999988864 45566677632 1       1222211    1257


Q ss_pred             CEEEEecCChhhHHHHHHh-----hhcCCceEEEecc
Q 025101          144 DYCFECVGLASLVQEAYAC-----CRKGWGKTIVLGV  175 (258)
Q Consensus       144 d~v~d~~g~~~~~~~~~~~-----l~~~~G~~v~~g~  175 (258)
                      |+||-|+.... ....+..     +.++ ..++.++.
T Consensus        94 DvVilavp~~~-~~~vl~~l~~~~l~~~-~iviDv~S  128 (304)
T PLN02256         94 DVVLLCTSILS-TEAVLRSLPLQRLKRS-TLFVDVLS  128 (304)
T ss_pred             CEEEEecCHHH-HHHHHHhhhhhccCCC-CEEEecCC
Confidence            88888887654 3333333     3455 56666654

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.51  E-value=0.033  Score=48.26  Aligned_cols=102  Identities=13%  Similarity=0.209  Sum_probs=64.2

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-eE--EcCCCCCCccHHHHHHH
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSVSQIIID  137 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~~i~~  137 (258)
                      ....+++|++||-.|+|+ |-.+..+++..+..+|++++.++++.+.++    ++|.. .+  ++...   ..... .  
T Consensus       232 ~~L~~~~g~~VLDlcag~-G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~---~~~~~-~--  304 (426)
T TIGR00563       232 TWLAPQNEETILDACAAP-GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG---RGPSQ-W--  304 (426)
T ss_pred             HHhCCCCCCeEEEeCCCc-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc---ccccc-c--
Confidence            455788999999998754 545556666555338999999999887654    46654 22  22211   11100 0  


Q ss_pred             hcCCCCCEEE-E--ecCCh-------------------------hhHHHHHHhhhcCCceEEEec
Q 025101          138 MTDGGADYCF-E--CVGLA-------------------------SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~~~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ...+.||.|| |  |+|..                         ..+..+++.++|+ |+++...
T Consensus       305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvyst  368 (426)
T TIGR00563       305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYAT  368 (426)
T ss_pred             ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence            0112699998 5  55532                         2467788999999 9998654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.51  E-value=0.045  Score=41.21  Aligned_cols=33  Identities=27%  Similarity=0.226  Sum_probs=28.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      +|+|+|+|++|...++.+...|..++..+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999988889998898888765

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=96.51  E-value=0.033  Score=46.17  Aligned_cols=95  Identities=12%  Similarity=0.000  Sum_probs=61.1

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHH-HcCCCeEEEEcCCcchHHHH-Hhc---CCceEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIG-KRF---GVTEFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~-~~g~~~v~~~~~~~~~~~~~-~~~---g~~~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      .....+++|+|+|..|...++.+. ..+..+|.+..+++++.+.+ +++   |.. +...     .+..+.++     +.
T Consensus       122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~-~~~~-----~~~~~av~-----~a  190 (314)
T PRK06141        122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD-AEVV-----TDLEAAVR-----QA  190 (314)
T ss_pred             CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc-eEEe-----CCHHHHHh-----cC
Confidence            356789999999999998876444 46766899999998886544 333   322 2111     22333332     69


Q ss_pred             CEEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          144 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       144 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      |+|+.++++...+ ..-+.++++ -.+..+|..
T Consensus       191 DIVi~aT~s~~pv-l~~~~l~~g-~~i~~ig~~  221 (314)
T PRK06141        191 DIISCATLSTEPL-VRGEWLKPG-THLDLVGNF  221 (314)
T ss_pred             CEEEEeeCCCCCE-ecHHHcCCC-CEEEeeCCC
Confidence            9999988875421 112567887 766666643

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.50  E-value=0.025  Score=47.71  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=31.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .+.+|+|+|+|++|..+++.+...|.+++..++...
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            457999999999999999999999998998887654

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.49  E-value=0.051  Score=44.65  Aligned_cols=70  Identities=16%  Similarity=0.153  Sum_probs=48.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCCh
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      +|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+.+.     ..|+||.|+...
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~~~~--------~~~~e~~~-----~~d~vi~~vp~~   69 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGAETA--------STAKAVAE-----QCDVIITMLPNS   69 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec--------CCHHHHHh-----cCCEEEEeCCCH
Confidence            68899999999988887777898 89999999988887777665211        11222221     477888777754


Q ss_pred             hhHH
Q 025101          154 SLVQ  157 (258)
Q Consensus       154 ~~~~  157 (258)
                      ..+.
T Consensus        70 ~~~~   73 (296)
T PRK11559         70 PHVK   73 (296)
T ss_pred             HHHH
Confidence            4333

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.49  E-value=0.022  Score=45.02  Aligned_cols=79  Identities=22%  Similarity=0.306  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-EE--cCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~--  140 (258)
                      .+.+++|+|+ |.+|..++..+...|+ +|+++++++++.+.+    +..+... ++  |..+  .+++.+.++....  
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSD--YEEVTAAIEQLKNEL   82 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            3678999986 8999999988888899 899999987665432    2233221 12  2222  1223333333221  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|.+|.+.|.
T Consensus        83 ~~id~vi~~ag~   94 (239)
T PRK07666         83 GSIDILINNAGI   94 (239)
T ss_pred             CCccEEEEcCcc
Confidence            279999998764

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=96.49  E-value=0.016  Score=46.81  Aligned_cols=104  Identities=16%  Similarity=0.235  Sum_probs=66.7

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-C-ceEEcCCCCCCccHHHHHHHhcC
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-V-TEFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-~-~~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      +....++.++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++.- . ..+ ....   .++.+  ....+
T Consensus        44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i-~~~~---~D~~~--~~~~~  115 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKI-EFEA---NDILK--KDFPE  115 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCce-EEEE---CCccc--CCCCC
Confidence            34567888999999999873 5566677776787 8999999998888776632 1 111 1111   11110  01112


Q ss_pred             CCCCEEEEe--c---C---ChhhHHHHHHhhhcCCceEEEecc
Q 025101          141 GGADYCFEC--V---G---LASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       141 ~~~d~v~d~--~---g---~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      +.||+|+..  .   +   ....+..+.+.|+|+ |+++....
T Consensus       116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG-G~lvi~d~  157 (263)
T PTZ00098        116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN-GILLITDY  157 (263)
T ss_pred             CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            369999852  1   1   123577889999999 99987654

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=96.48  E-value=0.041  Score=45.00  Aligned_cols=92  Identities=20%  Similarity=0.205  Sum_probs=55.9

Q ss_pred             CEEEEEccCHHHHH-HHHHHHHcCCCeEEEEc-CCcc--hHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           73 STVVIFGLGSIGLA-VAEGARLCGATRIIGVD-VISE--KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        73 ~~vlI~G~g~~G~~-a~~l~~~~g~~~v~~~~-~~~~--~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      -++.|+|+|.+|.. +..+.+.-+. .+.++. .+++  ..++++++|....+       .++...+.+..-.++|+||+
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~v-elvAVvdid~es~gla~A~~~Gi~~~~-------~~ie~LL~~~~~~dIDiVf~   76 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHL-EPGAMVGIDPESDGLARARRLGVATSA-------EGIDGLLAMPEFDDIDIVFD   76 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCc-EEEEEEeCChhhHHHHHHHHcCCCccc-------CCHHHHHhCcCCCCCCEEEE
Confidence            47899999999987 4455554466 666554 4443  34567788864332       22333332100027999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEe
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      +++.....+.+...+..+ -.++..
T Consensus        77 AT~a~~H~e~a~~a~eaG-k~VID~  100 (302)
T PRK08300         77 ATSAGAHVRHAAKLREAG-IRAIDL  100 (302)
T ss_pred             CCCHHHHHHHHHHHHHcC-CeEEEC
Confidence            999887666666666654 444443

>PRK12743 oxidoreductase; Provisional

Probab=96.47  E-value=0.024  Score=45.39  Aligned_cols=77  Identities=18%  Similarity=0.078  Sum_probs=47.2

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHH----HHhcCCc-eE--EcCCCCCCccHH---HHHHHhc
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVT-EF--VNSKNCGDKSVS---QIIIDMT  139 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~----~~~~g~~-~v--i~~~~~~~~~~~---~~i~~~~  139 (258)
                      ++++||+|+ |++|..+++.+...|+ +|+++.+ +.++.+.    ++..|.. .+  .|..+  .+++.   +.+.+..
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   78 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSD--LPEGAQALDKLIQRL   78 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            568999987 8999999999998999 8887754 4333332    2334532 22  23332  12222   2333222


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                       +.+|++|.+.|.
T Consensus        79 -~~id~li~~ag~   90 (256)
T PRK12743         79 -GRIDVLVNNAGA   90 (256)
T ss_pred             -CCCCEEEECCCC
Confidence             269999988874

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.015  Score=45.79  Aligned_cols=74  Identities=19%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHHHHHHhcCC-CCCEEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDG-GADYCF  147 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~  147 (258)
                      +++++||+|+ |.+|..+++.+...|. +|+++++++++     ..... ...|..+  .+++.+.+.+.... +.|++|
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~-----~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~d~vi   73 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAID-----DFPGELFACDLAD--IEQTAATLAQINEIHPVDAIV   73 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCccc-----ccCceEEEeeCCC--HHHHHHHHHHHHHhCCCcEEE
Confidence            3578999987 8999999998888898 89999887754     12211 1233333  13333334443333 689999


Q ss_pred             EecCC
Q 025101          148 ECVGL  152 (258)
Q Consensus       148 d~~g~  152 (258)
                      .+.|.
T Consensus        74 ~~ag~   78 (234)
T PRK07577         74 NNVGI   78 (234)
T ss_pred             ECCCC
Confidence            98874

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.47  E-value=0.02  Score=45.75  Aligned_cols=79  Identities=18%  Similarity=0.199  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-eE--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      .++++||+|+ +++|..++..+...|+ +|+.++++.++.+.+    ++.+.. .+  .|..+  .+++.+.+.....  
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   86 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFALSKL   86 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4789999987 8999999998888899 888888877665443    223332 12  23333  1223333333221  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|+++.+.|.
T Consensus        87 ~~~d~li~~ag~   98 (255)
T PRK06113         87 GKVDILVNNAGG   98 (255)
T ss_pred             CCCCEEEECCCC
Confidence            369999998873

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.023  Score=45.97  Aligned_cols=79  Identities=25%  Similarity=0.320  Sum_probs=49.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch-------HH----HHHhcCCc-eE--EcCCCCCCccHHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FE----IGKRFGVT-EF--VNSKNCGDKSVSQII  135 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~-------~~----~~~~~g~~-~v--i~~~~~~~~~~~~~i  135 (258)
                      +++++||+|+ |++|..+++.+...|+ +|++++++.++       .+    .++..+.. .+  .|..+  .+++.+.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~   81 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD--EDQVAAAV   81 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHH
Confidence            5679999987 8999999988888899 89999887542       11    12233432 12  33333  12333333


Q ss_pred             HHhcC--CCCCEEEEecCC
Q 025101          136 IDMTD--GGADYCFECVGL  152 (258)
Q Consensus       136 ~~~~~--~~~d~v~d~~g~  152 (258)
                      .+...  +.+|++|.+.|.
T Consensus        82 ~~~~~~~g~id~li~~ag~  100 (273)
T PRK08278         82 AKAVERFGGIDICVNNASA  100 (273)
T ss_pred             HHHHHHhCCCCEEEECCCC
Confidence            32211  269999998874

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.45  E-value=0.024  Score=45.26  Aligned_cols=101  Identities=15%  Similarity=0.132  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc--CCceE-EcCCCCCCccHHHHHHHhcCCCCCE
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF--GVTEF-VNSKNCGDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~--g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~  145 (258)
                      .++.+|||+|+ |.+|..+++.+...|+ +|+++.|++++.......  ++..+ .|..+   .  .+.+.+....++|+
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d---~--~~~l~~~~~~~~d~   88 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQIVRADVTE---G--SDKLVEAIGDDSDA   88 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceEEEEeeCCC---C--HHHHHHHhhcCCCE
Confidence            34679999996 9999999888887898 899998887765433221  23211 23322   1  12222222126999


Q ss_pred             EEEecCChh-------------hHHHHHHhhhcC-CceEEEeccc
Q 025101          146 CFECVGLAS-------------LVQEAYACCRKG-WGKTIVLGVD  176 (258)
Q Consensus       146 v~d~~g~~~-------------~~~~~~~~l~~~-~G~~v~~g~~  176 (258)
                      ||.+.|...             ....+++.+... .++++.++..
T Consensus        89 vi~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         89 VICATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             EEECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            998876421             123444444433 1578887754

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.026  Score=46.12  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=30.1

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      -+|+++||+|+ +++|.++++.+...|+ +|++++++.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~   40 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGV   40 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            35789999986 8999999888888899 888887654

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.45  E-value=0.032  Score=48.46  Aligned_cols=104  Identities=18%  Similarity=0.277  Sum_probs=63.2

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHH----hcCCce--EEcCCCCCCccHHHHHHH
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFGVTE--FVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~----~~g~~~--vi~~~~~~~~~~~~~i~~  137 (258)
                      ....+++|++||=.|+|+ |..+..+++..+ ..+|++++.++++.+.++    .+|.+.  ++..+.   .++... ..
T Consensus       246 ~~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~---~~~~~~-~~  320 (434)
T PRK14901        246 PLLDPQPGEVILDACAAP-GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS---RNLLEL-KP  320 (434)
T ss_pred             HHhCCCCcCEEEEeCCCC-chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh---hhcccc-cc
Confidence            345678899999887654 444555555443 238999999999887664    467653  222211   111100 00


Q ss_pred             hcCCCCCEEE-E--ecCC-------------------------hhhHHHHHHhhhcCCceEEEec
Q 025101          138 MTDGGADYCF-E--CVGL-------------------------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ...+.||.|+ |  |+|.                         ...+..+++.++|+ |+++...
T Consensus       321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg-G~lvyst  384 (434)
T PRK14901        321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG-GTLVYAT  384 (434)
T ss_pred             cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            1123699987 5  5542                         12377889999999 9987543

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.44  E-value=0.02  Score=47.30  Aligned_cols=94  Identities=17%  Similarity=0.098  Sum_probs=56.4

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCceEEcCCCCCCccHHHHHHHh---cCCCCCEEEE
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTEFVNSKNCGDKSVSQIIIDM---TDGGADYCFE  148 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~~i~~~---~~~~~d~v~d  148 (258)
                      .+|+|+|+|++|......+...|. .|+.+++++++.+.+++- |.. +.+..+   .... .+...   ..+.+|+||-
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~---~~~~-~~~~~~~~~~~~~D~viv   76 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLT-LVEQGQ---ASLY-AIPAETADAAEPIHRLLL   76 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeE-EeeCCc---ceee-ccCCCCcccccccCEEEE
Confidence            469999999999887777777788 899999988787777653 431 221111   0000 00000   0126899999


Q ss_pred             ecCChh---hHHHHHHhhhcCCceEEEe
Q 025101          149 CVGLAS---LVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       149 ~~g~~~---~~~~~~~~l~~~~G~~v~~  173 (258)
                      |+=+-.   .+..+...+.++ ..++.+
T Consensus        77 ~vK~~~~~~al~~l~~~l~~~-t~vv~l  103 (305)
T PRK05708         77 ACKAYDAEPAVASLAHRLAPG-AELLLL  103 (305)
T ss_pred             ECCHHhHHHHHHHHHhhCCCC-CEEEEE
Confidence            886544   233444445555 655544

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.44  E-value=0.11  Score=36.10  Aligned_cols=87  Identities=20%  Similarity=0.281  Sum_probs=59.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHc--CCCeEEE-EcCCcchHHH-HHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           74 TVVIFGLGSIGLAVAEGARLC--GATRIIG-VDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~--g~~~v~~-~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      ++.|+|.|.+|......++..  +. ++++ .++++++.+. .+++|.. .+       .++.+.+.+.   .+|+|+-+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~~~-~~-------~~~~~ll~~~---~~D~V~I~   69 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYGIP-VY-------TDLEELLADE---DVDAVIIA   69 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTTSE-EE-------SSHHHHHHHT---TESEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhccc-ch-------hHHHHHHHhh---cCCEEEEe
Confidence            578999999998887666654  44 5554 5666666654 4668876 43       3344444332   79999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEec
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +......+.+..++..  |+-+++.
T Consensus        70 tp~~~h~~~~~~~l~~--g~~v~~E   92 (120)
T PF01408_consen   70 TPPSSHAEIAKKALEA--GKHVLVE   92 (120)
T ss_dssp             SSGGGHHHHHHHHHHT--TSEEEEE
T ss_pred             cCCcchHHHHHHHHHc--CCEEEEE
Confidence            9988878888888886  4555564

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.44  E-value=0.044  Score=43.11  Aligned_cols=83  Identities=19%  Similarity=0.229  Sum_probs=57.4

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH--hcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK--RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~--~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      .++|.|+|.+|...++.+...|. .|+++++++++.+...  +++.. ++.-+.    .-.+.+++.--..+|+++-++|
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~-~v~gd~----t~~~~L~~agi~~aD~vva~t~   75 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTH-VVIGDA----TDEDVLEEAGIDDADAVVAATG   75 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceE-EEEecC----CCHHHHHhcCCCcCCEEEEeeC
Confidence            67899999999999999999999 8999999999877733  35543 332222    1223344432227999999999


Q ss_pred             ChhhHHHHHHhh
Q 025101          152 LASLVQEAYACC  163 (258)
Q Consensus       152 ~~~~~~~~~~~l  163 (258)
                      +.. .+..+-.+
T Consensus        76 ~d~-~N~i~~~l   86 (225)
T COG0569          76 NDE-VNSVLALL   86 (225)
T ss_pred             CCH-HHHHHHHH
Confidence            865 44444443

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.43  E-value=0.025  Score=44.72  Aligned_cols=79  Identities=22%  Similarity=0.246  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc-eE--EcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      ++.++||+|+ |.+|..+++.+...|+ +|+...++.++.+.+ .+.+.. .+  .|-.+  .+.+.+.+.+...  +++
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSD--RDEVKALGQKAEADLEGV   81 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            4679999986 9999999988888898 888888777666544 334422 12  22222  1222222222211  269


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |.+|.+.|.
T Consensus        82 d~vi~~ag~   90 (245)
T PRK12936         82 DILVNNAGI   90 (245)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.43  E-value=0.025  Score=45.52  Aligned_cols=79  Identities=23%  Similarity=0.410  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce---EEcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE---FVNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~~i~~~~~--  140 (258)
                      .+++++|+|+ +++|..++..+...|+ +|+++++++++.+.+    ++.|...   ..|-.+  .+++...+.+...  
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   85 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD--EDGVQAMVSQIEKEV   85 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHhC
Confidence            5689999987 8999998888888899 899888887765433    2334321   223332  1222222222211  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|.++.+.|.
T Consensus        86 ~~id~li~~ag~   97 (265)
T PRK07097         86 GVIDILVNNAGI   97 (265)
T ss_pred             CCCCEEEECCCC
Confidence            269999998874

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.42  E-value=0.025  Score=44.92  Aligned_cols=84  Identities=19%  Similarity=0.224  Sum_probs=51.7

Q ss_pred             CCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc--eE--EcCCCCCCccHHHHHHHh
Q 025101           68 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT--EF--VNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        68 ~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~--~v--i~~~~~~~~~~~~~i~~~  138 (258)
                      ...++++++|+|+ |.+|..+++.+...|+ +|++++++.++.+.+    ++.+..  .+  .|....+..++.+.+...
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   86 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTI   86 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHH
Confidence            3457899999986 8999999888888899 899999987664333    233322  12  232210112232222222


Q ss_pred             cC--CCCCEEEEecCC
Q 025101          139 TD--GGADYCFECVGL  152 (258)
Q Consensus       139 ~~--~~~d~v~d~~g~  152 (258)
                      ..  +.+|.+|.+.|.
T Consensus        87 ~~~~~~id~vi~~Ag~  102 (247)
T PRK08945         87 EEQFGRLDGVLHNAGL  102 (247)
T ss_pred             HHHhCCCCEEEECCcc
Confidence            21  269999987753

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.42  E-value=0.012  Score=45.41  Aligned_cols=35  Identities=37%  Similarity=0.441  Sum_probs=30.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      ...+|+|.|+|++|...++.+...|..+++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45789999999999999999988999789888877

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.42  E-value=0.1  Score=41.45  Aligned_cols=103  Identities=21%  Similarity=0.191  Sum_probs=59.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc-chH----HHHHhcCCc-eE--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKF----EIGKRFGVT-EF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~----~~~~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      .+.++||+|+ |.+|..+++-+...|+ +|+.+.++. ++.    +.+++.+.. ..  .|..+  ..++...+.+... 
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   81 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVST--REGCETLAKATIDR   81 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCC--HHHHHHHHHHHHHH
Confidence            3679999986 8999999888888999 777665432 222    122334432 12  23332  1222222332221 


Q ss_pred             -CCCCEEEEecCChh-------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          141 -GGADYCFECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       141 -~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                       +++|.+|.+.|...                         ..+.+...++.. |+++.++...
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~sS~~  143 (252)
T PRK06077         82 YGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-GAIVNIASVA  143 (252)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-cEEEEEcchh
Confidence             27999999887300                         123444555667 8998888644

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.42  E-value=0.024  Score=45.25  Aligned_cols=79  Identities=22%  Similarity=0.188  Sum_probs=48.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHhcCCce-EEcCCCCCCccHHHHHHHhcC--CCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~~~d~  145 (258)
                      .+++++|+|+ |++|..+++.+...|+ +|+++.+.. +..+.+++.+... ..|..+  .+++.+.+.+...  +++|+
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGN--RDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4689999986 8999999998888899 787765443 3344444434321 223333  1223333333221  26999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      +|.+.|.
T Consensus        83 li~~ag~   89 (255)
T PRK06463         83 LVNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998864

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.022  Score=45.95  Aligned_cols=76  Identities=22%  Similarity=0.267  Sum_probs=47.7

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-EE--cCCCCCCccHHHHHHHhcC--CCC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      ++||+|+ |++|..+++.+...|+ +|++++++.++.+.+    +..+... ++  |..+  .+++.+.+.....  +++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~i   78 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD--YSQLTALAQACEEKWGGI   78 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            6899987 8999999888888899 899999887765432    2233222 22  2222  1222222222211  269


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|.+.|.
T Consensus        79 d~lI~~ag~   87 (270)
T PRK05650         79 DVIVNNAGV   87 (270)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.40  E-value=0.042  Score=45.47  Aligned_cols=87  Identities=17%  Similarity=0.197  Sum_probs=55.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++.++..     +......  .   .++.+.+.     ..|+|+.+.
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~-----~~~~~~~--~---~~l~e~l~-----~aDvvv~~l  198 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWP-----GVQSFAG--R---EELSAFLS-----QTRVLINLL  198 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCC-----Cceeecc--c---ccHHHHHh-----cCCEEEECC
Confidence            57899999999999999999999999 9999987654321     1111110  0   12222222     477777766


Q ss_pred             CChhh-----HHHHHHhhhcCCceEEEec
Q 025101          151 GLASL-----VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~~~~-----~~~~~~~l~~~~G~~v~~g  174 (258)
                      .....     -...++.++++ ..++.+|
T Consensus       199 Plt~~T~~li~~~~l~~mk~g-a~lIN~a  226 (312)
T PRK15469        199 PNTPETVGIINQQLLEQLPDG-AYLLNLA  226 (312)
T ss_pred             CCCHHHHHHhHHHHHhcCCCC-cEEEECC
Confidence            64221     12455667776 6666665

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.40  E-value=0.018  Score=52.95  Aligned_cols=79  Identities=23%  Similarity=0.333  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h----cCCce----EEcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R----FGVTE----FVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~----~g~~~----vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+. +    .+...    ..|..+  .+++.+.+.+...
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd--~~~v~~a~~~i~~  489 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD--EQAVKAAFADVAL  489 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4789999986 8999999998888899 9999999877655432 2    23211    123322  1223333333221


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|++|.+.|.
T Consensus       490 ~~g~iDilV~nAG~  503 (676)
T TIGR02632       490 AYGGVDIVVNNAGI  503 (676)
T ss_pred             hcCCCcEEEECCCC
Confidence              379999998874

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.39  E-value=0.029  Score=45.66  Aligned_cols=68  Identities=19%  Similarity=0.282  Sum_probs=49.4

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCCh
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      +|.|+|.|.+|...+..++..|. +|+++++++++.+.+.+.|.....   .   .+. +.+     ...|+||-|+...
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~~---~---~~~-~~~-----~~aDlVilavp~~   68 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDEA---S---TDL-SLL-----KDCDLVILALPIG   68 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCcccc---c---CCH-hHh-----cCCCEEEEcCCHH
Confidence            58899999999988888888898 899999999888888777742111   1   111 111     1588999888865


Q ss_pred             h
Q 025101          154 S  154 (258)
Q Consensus       154 ~  154 (258)
                      .
T Consensus        69 ~   69 (279)
T PRK07417         69 L   69 (279)
T ss_pred             H
Confidence            5

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.39  E-value=0.031  Score=46.16  Aligned_cols=81  Identities=21%  Similarity=0.305  Sum_probs=47.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc-chHH-H---HHhcCCceEEcCCCCCCccHHHHHHHh-c-CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE-I---GKRFGVTEFVNSKNCGDKSVSQIIIDM-T-DGG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~~-~---~~~~g~~~vi~~~~~~~~~~~~~i~~~-~-~~~  142 (258)
                      +|+++||+|+ +++|...++.+...|+ +|++.++.. ++.+ .   ++..|....+..-+..+.+-.+.+.+. . -+.
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~   89 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGG   89 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            5789999987 8999999888888899 888887643 2222 2   233343222222221112222222211 1 247


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|.+.|.
T Consensus        90 iD~li~nAG~   99 (306)
T PRK07792         90 LDIVVNNAGI   99 (306)
T ss_pred             CCEEEECCCC
Confidence            9999998874

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.36  E-value=0.034  Score=47.13  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .+.+|+|+|+|++|..+++.+...|..+++.++.+
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999999888888765

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.34  E-value=0.05  Score=44.44  Aligned_cols=94  Identities=18%  Similarity=0.262  Sum_probs=64.0

Q ss_pred             hcchhhhhhhhhhhhhcCC-CCCCEEEEEc-cCHHHHHHHHHHHHcCCCeEEEEc-CCcchHHHHHhcCCceEEcCCCCC
Q 025101           51 LLSCGVSTGVGAAWRTANV-EVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVD-VISEKFEIGKRFGVTEFVNSKNCG  127 (258)
Q Consensus        51 ~~~~~~~ta~~~l~~~~~~-~~g~~vlI~G-~g~~G~~a~~l~~~~g~~~v~~~~-~~~~~~~~~~~~g~~~vi~~~~~~  127 (258)
                      .+||+....+. +.+..++ -.|++|+|+| .+.+|.-++.++...|+ .|++.. ++.                     
T Consensus       137 ~~PcTp~ai~~-ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~---------------------  193 (296)
T PRK14188        137 LVPCTPLGCMM-LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR---------------------  193 (296)
T ss_pred             CcCCCHHHHHH-HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC---------------------
Confidence            34544333333 3344343 4799999999 68999999999988899 788773 332                     


Q ss_pred             CccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          128 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       128 ~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                        ++.+.++     ..|+|+-++|.+..+...+  ++++ ..++.+|...
T Consensus       194 --~l~e~~~-----~ADIVIsavg~~~~v~~~~--lk~G-avVIDvGin~  233 (296)
T PRK14188        194 --DLPAVCR-----RADILVAAVGRPEMVKGDW--IKPG-ATVIDVGINR  233 (296)
T ss_pred             --CHHHHHh-----cCCEEEEecCChhhcchhe--ecCC-CEEEEcCCcc
Confidence              1111111     5899999999988565544  8888 8999998643

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.34  E-value=0.019  Score=46.02  Aligned_cols=74  Identities=19%  Similarity=0.257  Sum_probs=46.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHH---HHHHhcCCCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQ---IIIDMTDGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~---~i~~~~~~~~d~  145 (258)
                      +|+++||+|+ |++|..+++.+...|+ +|+++++++++..   .-... ...|..+  .+++.+   .+.+.. +++|+
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~---~~~~~~~~~D~~~--~~~~~~~~~~~~~~~-~~id~   80 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDDL---PEGVEFVAADLTT--AEGCAAVARAVLERL-GGVDI   80 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhhc---CCceeEEecCCCC--HHHHHHHHHHHHHHc-CCCCE
Confidence            5789999986 8999999998888899 8999988764321   00111 1123333  122222   222222 26999


Q ss_pred             EEEecC
Q 025101          146 CFECVG  151 (258)
Q Consensus       146 v~d~~g  151 (258)
                      +|++.|
T Consensus        81 vi~~ag   86 (260)
T PRK06523         81 LVHVLG   86 (260)
T ss_pred             EEECCc
Confidence            999887

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.34  E-value=0.03  Score=48.93  Aligned_cols=71  Identities=25%  Similarity=0.353  Sum_probs=48.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc-chH----HHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-EKF----EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~----~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~  145 (258)
                      .+++++|+|+|.+|+.+++.+...|+ +|+++++++ +..    +.++++|.. ++..+.   .+   .+    .+++|+
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~~~-~~~~~~---~~---~~----~~~~d~   71 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELGIE-LVLGEY---PE---EF----LEGVDL   71 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCE-EEeCCc---ch---hH----hhcCCE
Confidence            47899999998899999999999999 899998764 222    334455654 332221   11   11    126999


Q ss_pred             EEEecCCh
Q 025101          146 CFECVGLA  153 (258)
Q Consensus       146 v~d~~g~~  153 (258)
                      |+.+.|..
T Consensus        72 vv~~~g~~   79 (450)
T PRK14106         72 VVVSPGVP   79 (450)
T ss_pred             EEECCCCC
Confidence            99988853

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.34  E-value=0.049  Score=45.45  Aligned_cols=94  Identities=19%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHH-HcCCCeEEEEcCCcchHHHH-Hhc----CCceEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIG-KRF----GVTEFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~-~~g~~~v~~~~~~~~~~~~~-~~~----g~~~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      +...+++|+|+|..|.+.+..+. ..+.++|.+..++.++.+.+ +++    |.. +...     ++..+.+.     +.
T Consensus       127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~-v~~~-----~~~~~av~-----~a  195 (326)
T TIGR02992       127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID-VTAA-----TDPRAAMS-----GA  195 (326)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce-EEEe-----CCHHHHhc-----cC
Confidence            45678999999999988777665 57877899999998886543 333    432 2222     22333332     69


Q ss_pred             CEEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          144 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       144 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      |+|+.|+++... -.....++++ -.+..+|..
T Consensus       196 DiVvtaT~s~~p-~i~~~~l~~g-~~i~~vg~~  226 (326)
T TIGR02992       196 DIIVTTTPSETP-ILHAEWLEPG-QHVTAMGSD  226 (326)
T ss_pred             CEEEEecCCCCc-EecHHHcCCC-cEEEeeCCC
Confidence            999999987541 1123457887 777778754

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.31  E-value=0.025  Score=45.49  Aligned_cols=79  Identities=20%  Similarity=0.340  Sum_probs=47.5

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCC---cchHHHH-HhcCCceE--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVI---SEKFEIG-KRFGVTEF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~---~~~~~~~-~~~g~~~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++||+|+   +++|.++++.+...|+ +|+.+.+.   +++.+.+ ++++....  .|..+  .+++.+.+..... 
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~   81 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVAS--DEQIDALFASLGQH   81 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCC--HHHHHHHHHHHHHH
Confidence            4789999983   5899999888888999 88887543   2333322 33443222  23332  2333333333322 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +.+|+++++.|.
T Consensus        82 ~g~iD~lvnnAG~   94 (260)
T PRK06997         82 WDGLDGLVHSIGF   94 (260)
T ss_pred             hCCCcEEEEcccc
Confidence             379999998763

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.30  E-value=0.038  Score=48.70  Aligned_cols=70  Identities=27%  Similarity=0.286  Sum_probs=49.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc-----hHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-----KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~-----~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      ..+++|+|+|+|.+|+.++..++..|+ +|++++.++.     ..+.+++.|+........   .     +    ..++|
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~---~-----~----~~~~D   80 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPGP---T-----L----PEDTD   80 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc---c-----c----cCCCC
Confidence            357799999999999999999999999 8999886542     224466678754333222   1     0    11688


Q ss_pred             EEEEecCC
Q 025101          145 YCFECVGL  152 (258)
Q Consensus       145 ~v~d~~g~  152 (258)
                      +|+-+.|-
T Consensus        81 ~Vv~s~Gi   88 (480)
T PRK01438         81 LVVTSPGW   88 (480)
T ss_pred             EEEECCCc
Confidence            88888775

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.29  E-value=0.024  Score=46.65  Aligned_cols=85  Identities=14%  Similarity=0.145  Sum_probs=53.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCC-CccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG-DKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~-~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +|+|+|+|.+|.+.+..+...|. +|+.+++++++.+.+++.|...  +..+.. .........+.  ..+|+||-|+..
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~--~~~d~vila~k~   76 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRL--EDGEITVPVLAADDPAEL--GPQDLVILAVKA   76 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcc--cCCceeecccCCCChhHc--CCCCEEEEeccc
Confidence            58999999999998888887888 8999999888877777666421  100000 00000011111  379999999886


Q ss_pred             hhhHHHHHHhhh
Q 025101          153 ASLVQEAYACCR  164 (258)
Q Consensus       153 ~~~~~~~~~~l~  164 (258)
                      .. +...+..++
T Consensus        77 ~~-~~~~~~~l~   87 (304)
T PRK06522         77 YQ-LPAALPSLA   87 (304)
T ss_pred             cc-HHHHHHHHh
Confidence            55 455454444

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=96.29  E-value=0.057  Score=43.51  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=66.0

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhc-C------Cc--eEEcCCCCCCccHHHH
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRF-G------VT--EFVNSKNCGDKSVSQI  134 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~-g------~~--~vi~~~~~~~~~~~~~  134 (258)
                      +...+.++++||-+|+|. |..+..+++..|. .+|++++.+++..+.+++. .      ..  .++..+.   +++   
T Consensus        67 ~~~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~---~~l---  139 (261)
T PLN02233         67 SWSGAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA---TDL---  139 (261)
T ss_pred             HHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc---ccC---
Confidence            345677899999999874 6677778877652 2899999999988877542 1      11  1221111   111   


Q ss_pred             HHHhcCCCCCEEEEecC-----C-hhhHHHHHHhhhcCCceEEEeccc
Q 025101          135 IIDMTDGGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       135 i~~~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                        ...++.||.|+-+.+     . ...+.++.+.|+|+ |+++.+...
T Consensus       140 --p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG-G~l~i~d~~  184 (261)
T PLN02233        140 --PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG-SRVSILDFN  184 (261)
T ss_pred             --CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC-cEEEEEECC
Confidence              111226999875332     1 23588999999999 999877644

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.29  E-value=0.038  Score=47.30  Aligned_cols=81  Identities=17%  Similarity=0.261  Sum_probs=50.6

Q ss_pred             CCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHH-------HHHhc-CCceE-EcCCCCCCccHHHHHHH
Q 025101           68 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-------IGKRF-GVTEF-VNSKNCGDKSVSQIIID  137 (258)
Q Consensus        68 ~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-------~~~~~-g~~~v-i~~~~~~~~~~~~~i~~  137 (258)
                      +...+.+|||+|+ |.+|..+++.+...|+ +|++++++.++.+       ..+.. ++..+ .|..+  .+.+...+++
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~~  132 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTD--ADSLRKVLFS  132 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCC--HHHHHHHHHH
Confidence            3456789999986 9999999998888899 8999998775421       11112 23222 23333  1223222322


Q ss_pred             hcCCCCCEEEEecCC
Q 025101          138 MTDGGADYCFECVGL  152 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~  152 (258)
                      . ++++|+||+|.+.
T Consensus       133 ~-~~~~D~Vi~~aa~  146 (390)
T PLN02657        133 E-GDPVDVVVSCLAS  146 (390)
T ss_pred             h-CCCCcEEEECCcc
Confidence            1 1169999998864

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=96.28  E-value=0.1  Score=42.48  Aligned_cols=108  Identities=15%  Similarity=0.099  Sum_probs=72.0

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-c--C-C-ceEEcCCC-CCCccHHHHHHHhcCC-
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F--G-V-TEFVNSKN-CGDKSVSQIIIDMTDG-  141 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~--g-~-~~vi~~~~-~~~~~~~~~i~~~~~~-  141 (258)
                      .+++-|+|+|+ ++.|..++.-+...|+ +|++.+-.++..+.++. .  + . +...|-.+ .+..+..+.+++..++ 
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf-~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~  105 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGF-RVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGED  105 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCC-EEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence            45678999998 8999998888888999 99998877776665543 2  1 1 12344444 0123344455666666 


Q ss_pred             CCCEEEEecCCh--------------------------hhHHHHHHhhhcCCceEEEecccCC
Q 025101          142 GADYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       142 ~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      +.--++++.|-.                          ......+..+++.+||++.+++..+
T Consensus       106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G  168 (322)
T KOG1610|consen  106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG  168 (322)
T ss_pred             cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc
Confidence            777888888721                          1234556667766699999987665

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.28  E-value=0.035  Score=47.63  Aligned_cols=74  Identities=19%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC--Cc-eEEcCCCCCCccHHHHHHHhcCCCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG--VT-EFVNSKNCGDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g--~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~  145 (258)
                      +|++++|+|+ |++|.++++.+...|+ +|+++++++++.+.. .+.+  .. ...|..+   +   +.+.+.. +++|+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd---~---~~v~~~l-~~IDi  248 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEINGEDLPVKTLHWQVGQ---E---AALAELL-EKVDI  248 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC---H---HHHHHHh-CCCCE
Confidence            4789999987 8999999988888899 899998877655322 1111  11 1123333   2   2233333 26999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      +|.+.|.
T Consensus       249 LInnAGi  255 (406)
T PRK07424        249 LIINHGI  255 (406)
T ss_pred             EEECCCc
Confidence            9988764

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.27  E-value=0.047  Score=49.70  Aligned_cols=76  Identities=17%  Similarity=0.297  Sum_probs=57.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEE-cCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .++|+|.|.|.+|+..++.++..|. ++++++.++++.+.+++.|...++ |..+   .   +.+++.--+.+|.++-++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat~---~---~~L~~agi~~A~~vvv~~  472 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFYGDATR---M---DLLESAGAAKAEVLINAI  472 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEEEeCCC---H---HHHHhcCCCcCCEEEEEe
Confidence            3679999999999999999999999 899999999999999998865332 2222   2   223332112799999999


Q ss_pred             CChh
Q 025101          151 GLAS  154 (258)
Q Consensus       151 g~~~  154 (258)
                      +++.
T Consensus       473 ~d~~  476 (621)
T PRK03562        473 DDPQ  476 (621)
T ss_pred             CCHH
Confidence            8865

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.27  E-value=0.039  Score=42.77  Aligned_cols=96  Identities=18%  Similarity=0.160  Sum_probs=60.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +|++|||+|+|.+|.-=+.++...|+ +|+++.... +....+.+-+-...+. +.     +...  .+ . ++++||-+
T Consensus        11 ~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~~~el~~~~~~~~i~~~~-~~-----~~~~--~~-~-~~~lviaA   79 (210)
T COG1648          11 EGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEFEPELKALIEEGKIKWIE-RE-----FDAE--DL-D-DAFLVIAA   79 (210)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCccHHHHHHHHhcCcchhh-cc-----cChh--hh-c-CceEEEEe
Confidence            67899999999999998999999999 888886555 2222222222111111 11     1110  01 1 58999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      ++++..-+.....+.+. +.++.....+.
T Consensus        80 t~d~~ln~~i~~~a~~~-~i~vNv~D~p~  107 (210)
T COG1648          80 TDDEELNERIAKAARER-RILVNVVDDPE  107 (210)
T ss_pred             CCCHHHHHHHHHHHHHh-CCceeccCCcc
Confidence            99988444555566666 87776664443

>PRK12746 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.11  Score=41.43  Aligned_cols=38  Identities=21%  Similarity=0.122  Sum_probs=30.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEE-cCCcchH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKF  109 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~-~~~~~~~  109 (258)
                      .+.+++|+|+ |.+|..+++.+...|+ +|++. .++.++.
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~   44 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAA   44 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH
Confidence            3678999986 9999999998888898 77664 5666554

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.26  E-value=0.028  Score=44.73  Aligned_cols=78  Identities=23%  Similarity=0.385  Sum_probs=49.3

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eE--EcCCCCCCccHHHHHHHhc--CC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF--VNSKNCGDKSVSQIIIDMT--DG  141 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--i~~~~~~~~~~~~~i~~~~--~~  141 (258)
                      ++++||+|+ |.+|..++..+...|+ +|+++++++++.+.+.+    .+.. ..  .|..+  .+++...+.+..  -+
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   77 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK--EDEIADMIAAAAAEFG   77 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHhcC
Confidence            357999987 9999999988888899 89999998877655433    2222 11  23333  122322222221  12


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|.||.+.+.
T Consensus        78 ~~d~vi~~a~~   88 (255)
T TIGR01963        78 GLDILVNNAGI   88 (255)
T ss_pred             CCCEEEECCCC
Confidence            68999987753

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=96.25  E-value=0.024  Score=45.49  Aligned_cols=103  Identities=19%  Similarity=0.275  Sum_probs=60.6

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCCcc------hHHHHHhcCC-ceE--EcCCCCCCccHHHHHHHh
Q 025101           71 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE------KFEIGKRFGV-TEF--VNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~~~------~~~~~~~~g~-~~v--i~~~~~~~~~~~~~i~~~  138 (258)
                      +|++++|+|+   +++|.++++.+...|+ +|+++.++.+      ..+.+++.+. ...  .|-.+  .+++.+.+.+.
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~   81 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQD--DAQIEETFETI   81 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCC--HHHHHHHHHHH
Confidence            4789999985   4899999988888999 8887754332      1222222221 112  23333  12333333332


Q ss_pred             cC--CCCCEEEEecCCh-------h----------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          139 TD--GGADYCFECVGLA-------S----------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       139 ~~--~~~d~v~d~~g~~-------~----------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      ..  +.+|+++++.|..       .                      ..+..+..++.+ |+++.++...
T Consensus        82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~-g~Iv~isS~~  150 (258)
T PRK07370         82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG-GSIVTLTYLG  150 (258)
T ss_pred             HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC-CeEEEEeccc
Confidence            22  3799999988731       0                      123456666777 9988887543

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.24  E-value=0.056  Score=39.91  Aligned_cols=85  Identities=14%  Similarity=0.041  Sum_probs=54.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC------ceEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV------TEFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~------~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      +|.|+|+|+.|.+++..+...|. +|....++++..+.+++-+.      ...+..+-.-..++.+.++     +.|+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~-----~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE-----DADIII   74 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT-----T-SEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC-----cccEEE
Confidence            57899999999999999999997 99999999988777765321      1000000000023433332     689999


Q ss_pred             EecCChhhHHHHHHhhhc
Q 025101          148 ECVGLASLVQEAYACCRK  165 (258)
Q Consensus       148 d~~g~~~~~~~~~~~l~~  165 (258)
                      -++.+.. +...++.+++
T Consensus        75 iavPs~~-~~~~~~~l~~   91 (157)
T PF01210_consen   75 IAVPSQA-HREVLEQLAP   91 (157)
T ss_dssp             E-S-GGG-HHHHHHHHTT
T ss_pred             ecccHHH-HHHHHHHHhh
Confidence            9998866 5666666555

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.23  E-value=0.049  Score=49.00  Aligned_cols=76  Identities=11%  Similarity=0.187  Sum_probs=56.1

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +.++|.|.|.+|+.+++.++..|. ++++++.++++.+.+++.|...+.- +-    .-.+.+++.--+.+|.++-++++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~G-D~----~~~~~L~~a~i~~a~~viv~~~~  491 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLG-NA----ANEEIMQLAHLDCARWLLLTIPN  491 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEc-CC----CCHHHHHhcCccccCEEEEEcCC
Confidence            678999999999999999999998 8999999999999999988654432 21    11222333211278988877776


Q ss_pred             hh
Q 025101          153 AS  154 (258)
Q Consensus       153 ~~  154 (258)
                      ..
T Consensus       492 ~~  493 (558)
T PRK10669        492 GY  493 (558)
T ss_pred             hH
Confidence            44

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.23  E-value=0.069  Score=43.65  Aligned_cols=94  Identities=19%  Similarity=0.249  Sum_probs=64.9

Q ss_pred             hcchhhhhhhhhhhhhcCC-CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCC
Q 025101           51 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  128 (258)
Q Consensus        51 ~~~~~~~ta~~~l~~~~~~-~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  128 (258)
                      .+||.....+. +.+..++ -.|++|.|+|. +.+|.-++.++...|+ .|++..+...                     
T Consensus       138 ~~PcTp~aii~-lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~---------------------  194 (301)
T PRK14194        138 LTPCTPSGCLR-LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST---------------------  194 (301)
T ss_pred             CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC---------------------
Confidence            45554333333 3344444 36999999997 5999999999999999 8888754321                     


Q ss_pred             ccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          129 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       129 ~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                       +..+..+     ..|+|+-++|.+..+...+  ++++ ..++.+|..
T Consensus       195 -~l~e~~~-----~ADIVIsavg~~~~v~~~~--ik~G-aiVIDvgin  233 (301)
T PRK14194        195 -DAKALCR-----QADIVVAAVGRPRLIDADW--LKPG-AVVIDVGIN  233 (301)
T ss_pred             -CHHHHHh-----cCCEEEEecCChhcccHhh--ccCC-cEEEEeccc
Confidence             1222222     5899999999887566554  8888 899999854

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.22  E-value=0.07  Score=44.63  Aligned_cols=37  Identities=38%  Similarity=0.496  Sum_probs=33.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcch
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  108 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~  108 (258)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.+++.+.
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  185 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP  185 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence            57899999999999999999999999 89999887644

>TIGR00417 speE spermidine synthase

Probab=96.22  E-value=0.059  Score=43.67  Aligned_cols=102  Identities=14%  Similarity=0.144  Sum_probs=61.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-C-ceEEcCCCC--CCccHHHHHHHhcCCCCCE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-V-TEFVNSKNC--GDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-~-~~vi~~~~~--~~~~~~~~i~~~~~~~~d~  145 (258)
                      ..+++||++|+|. |..+..+++..+..++++++.+++-.+.++++- . ...++....  -..+..+.+++. .+.+|+
T Consensus        71 ~~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDv  148 (270)
T TIGR00417        71 PNPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDV  148 (270)
T ss_pred             CCCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccE
Confidence            3456999999865 556667777665558999999888777776631 0 000111000  002333334332 347999


Q ss_pred             EE-Eec---C------ChhhHHHHHHhhhcCCceEEEec
Q 025101          146 CF-ECV---G------LASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       146 v~-d~~---g------~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      |+ |..   +      ....++.+.+.|+++ |.++...
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pg-G~lv~~~  186 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNED-GIFVAQS  186 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCC-cEEEEcC
Confidence            98 443   1      123356888999999 9998763

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=96.21  E-value=0.032  Score=46.90  Aligned_cols=75  Identities=13%  Similarity=0.137  Sum_probs=48.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC----Cce-EEcCCCCCCccHHHHHHHhcCC-C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG----VTE-FVNSKNCGDKSVSQIIIDMTDG-G  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g----~~~-vi~~~~~~~~~~~~~i~~~~~~-~  142 (258)
                      +|++|||+|+ |.+|..+++.+...|. +|+++++++...... +.++    ... ..|-.+   .   +.+.+...+ +
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~---~~~~~~~~~~~   75 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRD---A---AKLRKAIAEFK   75 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCC---H---HHHHHHHhhcC
Confidence            4789999986 9999999999988898 899998876543322 2222    111 112222   2   223333333 6


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|+||.+.+.
T Consensus        76 ~d~vih~A~~   85 (349)
T TIGR02622        76 PEIVFHLAAQ   85 (349)
T ss_pred             CCEEEECCcc
Confidence            8999998873

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.20  E-value=0.017  Score=40.88  Aligned_cols=79  Identities=20%  Similarity=0.288  Sum_probs=49.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEE-cCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGV-DVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~-~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      .-+|-|+|+|.+|..+...++..|. .|..+ .++.++.+.+.. ++...+.+..+            .. ...|++|=+
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~~~------------~~-~~aDlv~ia   75 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDLEE------------IL-RDADLVFIA   75 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----TTG------------GG-CC-SEEEE-
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCccccccccccccccccccccc------------cc-ccCCEEEEE
Confidence            3588999999999999999999998 78776 455555555544 44433333222            11 169999999


Q ss_pred             cCChhhHHHHHHhhhc
Q 025101          150 VGLASLVQEAYACCRK  165 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~  165 (258)
                      +.+.. +...+..+..
T Consensus        76 vpDda-I~~va~~La~   90 (127)
T PF10727_consen   76 VPDDA-IAEVAEQLAQ   90 (127)
T ss_dssp             S-CCH-HHHHHHHHHC
T ss_pred             echHH-HHHHHHHHHH
Confidence            99887 7777777664

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR00452 methyltransferase, putative

Probab=96.18  E-value=0.024  Score=46.81  Aligned_cols=99  Identities=14%  Similarity=0.092  Sum_probs=61.9

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHH---HHhc-CC---ceEEcCCCCCCccHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI---GKRF-GV---TEFVNSKNCGDKSVSQII  135 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~---~~~~-g~---~~vi~~~~~~~~~~~~~i  135 (258)
                      +.......+|++||-+|+|. |..+..+++. |+..|++++.++.....   ++++ +.   .++...      +    +
T Consensus       113 ~l~~l~~~~g~~VLDvGCG~-G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~------~----i  180 (314)
T TIGR00452       113 VLPHLSPLKGRTILDVGCGS-GYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL------G----I  180 (314)
T ss_pred             HHHhcCCCCCCEEEEeccCC-cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC------C----H
Confidence            33444567789999999975 7777777654 66579999988865432   2332 21   112211      1    1


Q ss_pred             HHhcCC-CCCEEEEec-----CC-hhhHHHHHHhhhcCCceEEEec
Q 025101          136 IDMTDG-GADYCFECV-----GL-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       136 ~~~~~~-~~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .++... .||+|+-..     .+ ...+.++.+.|+++ |++++-.
T Consensus       181 e~lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpG-G~Lvlet  225 (314)
T TIGR00452       181 EQLHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIK-GELVLET  225 (314)
T ss_pred             HHCCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCC-CEEEEEE
Confidence            222222 799998532     22 24588999999999 9998643

Known examples to date are restricted to the proteobacteria.

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.035  Score=44.93  Aligned_cols=79  Identities=18%  Similarity=0.099  Sum_probs=48.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCccHHHHHHHhc--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~--~  140 (258)
                      +.++++|+|+ |.+|..+++.+...|+ +|++++++.++.+.+    +..+... +  .|..+  .+++.+.+.+..  -
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   85 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTD--PDSVKSFVAQAEEAL   85 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHhc
Confidence            3468999987 8999999988888899 899888876654332    2234321 1  13322  122222222221  1


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|++|.+.|.
T Consensus        86 ~~id~vi~~Ag~   97 (274)
T PRK07775         86 GEIEVLVSGAGD   97 (274)
T ss_pred             CCCCEEEECCCc
Confidence            268999988864

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.16  E-value=0.022  Score=39.51  Aligned_cols=93  Identities=25%  Similarity=0.362  Sum_probs=58.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      |.+||-.|+|. |..++.+++.... ++++++.++...+.++.    .+.+   .++.      .++.+.......+.+|
T Consensus         1 g~~vlD~~~G~-G~~~~~~~~~~~~-~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~------~D~~~~~~~~~~~~~D   72 (117)
T PF13659_consen    1 GDRVLDPGCGS-GTFLLAALRRGAA-RVTGVDIDPEAVELARRNLPRNGLDDRVEVIV------GDARDLPEPLPDGKFD   72 (117)
T ss_dssp             TEEEEEETSTT-CHHHHHHHHHCTC-EEEEEESSHHHHHHHHHHCHHCTTTTTEEEEE------SHHHHHHHTCTTT-EE
T ss_pred             CCEEEEcCcch-HHHHHHHHHHCCC-eEEEEEECHHHHHHHHHHHHHccCCceEEEEE------CchhhchhhccCceeE
Confidence            56788887653 5566666665434 99999999998887765    3321   2221      3454444333344899


Q ss_pred             EEEEecCCh--------------hhHHHHHHhhhcCCceEEEe
Q 025101          145 YCFECVGLA--------------SLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       145 ~v~d~~g~~--------------~~~~~~~~~l~~~~G~~v~~  173 (258)
                      +|+-+....              ..+..+.+.++++ |.++.+
T Consensus        73 ~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g-G~~~~~  114 (117)
T PF13659_consen   73 LIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG-GVLVFI  114 (117)
T ss_dssp             EEEE--STTSBTT----GGCHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEECCCCccccccchhhHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence            998544321              2377899999999 998765

...

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.15  E-value=0.1  Score=42.96  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=36.9

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  117 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~  117 (258)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~~g~   45 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVDKGA   45 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHcCC
Confidence            68899999999988888888898 89999999998888776664

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.15  E-value=0.095  Score=43.14  Aligned_cols=43  Identities=30%  Similarity=0.578  Sum_probs=36.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  117 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~  117 (258)
                      +|.++|.|.+|...+.-+...|. +|++.++++++.+.+++.|+
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~~g~   44 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAGKLGI   44 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCC
Confidence            57889999999988888887898 89999999988888777774

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=96.13  E-value=0.0063  Score=48.11  Aligned_cols=104  Identities=24%  Similarity=0.467  Sum_probs=62.5

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCce--EEcCCCCCCccHHHHHHH
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~~  137 (258)
                      +....++|++||-.|+|. |..+..+++..+. .+|+++|-+++.++.+++    .+...  .+..+.   +++     .
T Consensus        41 ~~~~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da---~~l-----p  111 (233)
T PF01209_consen   41 KLLGLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA---EDL-----P  111 (233)
T ss_dssp             HHHT--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT---TB-------
T ss_pred             hccCCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH---HHh-----c
Confidence            445678899999998874 7888888887753 289999999998888764    33221  221111   111     1


Q ss_pred             hcCCCCCEEEEecCC------hhhHHHHHHhhhcCCceEEEecccCC
Q 025101          138 MTDGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      ..++.||.|.-+.|-      ...+.++.+.|+|| |+++.+.....
T Consensus       112 ~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG-G~l~ile~~~p  157 (233)
T PF01209_consen  112 FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPG-GRLVILEFSKP  157 (233)
T ss_dssp             S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE-EEEEEEEEEB-
T ss_pred             CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC-eEEEEeeccCC
Confidence            112269999876653      33688999999999 99988875433

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=96.13  E-value=0.023  Score=44.77  Aligned_cols=100  Identities=22%  Similarity=0.398  Sum_probs=64.3

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCce--EEcCCCCCCccHHHHHHH
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~~  137 (258)
                      ....++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++    .+.+.  ++..+.   .++     .
T Consensus        39 ~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~-----~  109 (231)
T TIGR02752        39 KRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA---MEL-----P  109 (231)
T ss_pred             HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech---hcC-----C
Confidence            455678899999999874 7777788877642 289999999888777654    22222  221111   110     1


Q ss_pred             hcCCCCCEEEEecC-----C-hhhHHHHHHhhhcCCceEEEec
Q 025101          138 MTDGGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ...+.+|+|+-+..     . ...+..+.+.|+|+ |+++...
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~  151 (231)
T TIGR02752       110 FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG-GKVVCLE  151 (231)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcC-eEEEEEE
Confidence            11237999975322     1 23467788999999 9998764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.13  E-value=0.077  Score=41.51  Aligned_cols=101  Identities=20%  Similarity=0.211  Sum_probs=61.3

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceEE---------cCCCCCCccHHHHHHH
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFV---------NSKNCGDKSVSQIIID  137 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi---------~~~~~~~~~~~~~i~~  137 (258)
                      .+.++.+||+.|+|. |.-++.||. .|+ +|++++.++.-.+.+ ++.+.....         ...+  ..-+...+.+
T Consensus        34 ~~~~~~rvL~~gCG~-G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~--v~~~~~D~~~  108 (218)
T PRK13255         34 ALPAGSRVLVPLCGK-SLDMLWLAE-QGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGE--ITIYCGDFFA  108 (218)
T ss_pred             CCCCCCeEEEeCCCC-hHhHHHHHh-CCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCc--eEEEECcccC
Confidence            445678999999984 888888876 699 899999999877754 333321100         0000  0000000111


Q ss_pred             hc--C-CCCCEEEEecCC--------hhhHHHHHHhhhcCCceEEEec
Q 025101          138 MT--D-GGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~--~-~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.  . +.||.|+|..--        ...+..+.+.|+|+ |+.++++
T Consensus       109 l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg-G~~~l~~  155 (218)
T PRK13255        109 LTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG-CRGLLVT  155 (218)
T ss_pred             CCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC-CeEEEEE
Confidence            11  1 268999995531        22477889999999 9866554

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.13  E-value=0.024  Score=50.49  Aligned_cols=92  Identities=15%  Similarity=0.136  Sum_probs=57.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      ++++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+ ++++. ..+...+     +.    +......|++++|
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la~~l~~-~~~~~~~-----~~----~~~~~~~diiINt  446 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELADAVGG-QALTLAD-----LE----NFHPEEGMILANT  446 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCC-ceeeHhH-----hh----hhccccCeEEEec
Confidence            46789999999999999999999999 999999987776654 34543 2222211     11    1111257899987


Q ss_pred             cCChhh-----HHHHHHhhhcCCceEEEec
Q 025101          150 VGLASL-----VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       150 ~g~~~~-----~~~~~~~l~~~~G~~v~~g  174 (258)
                      ++-...     .......+++. +.++.+-
T Consensus       447 T~vGm~~~~~~~pl~~~~l~~~-~~v~D~v  475 (529)
T PLN02520        447 TSVGMQPNVDETPISKHALKHY-SLVFDAV  475 (529)
T ss_pred             ccCCCCCCCCCCcccHhhCCCC-CEEEEec
Confidence            753220     11223445665 6666554

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.13  E-value=0.067  Score=44.58  Aligned_cols=96  Identities=13%  Similarity=0.047  Sum_probs=62.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHH-HcCCCeEEEEcCCcchHHHH-H---hcCCceEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIG-K---RFGVTEFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~-~~g~~~v~~~~~~~~~~~~~-~---~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      .+...++.|+|+|..|.+-++.+. .....+|.+.++++++.+.+ +   ++|..... .     .+..+.+.     +.
T Consensus       125 ~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~-~-----~~~~eav~-----~a  193 (325)
T TIGR02371       125 RKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRA-A-----TDPREAVE-----GC  193 (325)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEE-e-----CCHHHHhc-----cC
Confidence            345678999999999987555544 45667999999999887543 3   34532111 1     22333332     69


Q ss_pred             CEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          144 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       144 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      |+|+-|+++.. --.....++|+ -++..+|...
T Consensus       194 DiVitaT~s~~-P~~~~~~l~~g-~~v~~vGs~~  225 (325)
T TIGR02371       194 DILVTTTPSRK-PVVKADWVSEG-THINAIGADA  225 (325)
T ss_pred             CEEEEecCCCC-cEecHHHcCCC-CEEEecCCCC
Confidence            99999887654 11234567888 8988898654

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.12  E-value=0.05  Score=42.99  Aligned_cols=79  Identities=25%  Similarity=0.297  Sum_probs=47.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch-HHH----HHhcCCc-eEE--cCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEI----GKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~-~~~----~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++||+|+ |.+|..++..+...|+ +|+++.++..+ .+.    ++..+.. .++  |..+  .+++.+.+.+... 
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   80 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSD--AESVERAVDEAKAE   80 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4578999986 9999999999988899 78777665542 221    2223322 122  3333  1223232333222 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|.+|.+.|.
T Consensus        81 ~~~id~vi~~ag~   93 (248)
T PRK05557         81 FGGVDILVNNAGI   93 (248)
T ss_pred             cCCCCEEEECCCc
Confidence             268999988764

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=96.12  E-value=0.1  Score=45.62  Aligned_cols=101  Identities=15%  Similarity=0.234  Sum_probs=62.8

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHH----HhcCCceEEcCCCCCCccHHHHHHHhcCCC
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      .+++|++||=.++++ |-=+.+++..++ -..|++.+.+++|.+.+    +++|...+.-... +...    +.+..++.
T Consensus       110 ~~~pg~~VLD~CAAP-GgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~-D~~~----~~~~~~~~  183 (470)
T PRK11933        110 DDNAPQRVLDMAAAP-GSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHF-DGRV----FGAALPET  183 (470)
T ss_pred             CCCCCCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC-chhh----hhhhchhh
Confidence            678999999886544 223445555442 23799999999997665    4588765322222 0011    22222336


Q ss_pred             CCEEE-E--ecCCh-------------------------hhHHHHHHhhhcCCceEEEeccc
Q 025101          143 ADYCF-E--CVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       143 ~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ||.|+ |  |+|..                         ..+..+++.++|+ |+++ |.+.
T Consensus       184 fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpG-G~LV-YSTC  243 (470)
T PRK11933        184 FDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPG-GTLV-YSTC  243 (470)
T ss_pred             cCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEE-EECC
Confidence            99997 6  66652                         2466788999999 9886 4444

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.12  E-value=0.12  Score=42.50  Aligned_cols=43  Identities=19%  Similarity=0.257  Sum_probs=36.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  117 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~  117 (258)
                      +|.|+|.|.+|...+.-+...|. +|++.++++++.+.+++.|.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~   44 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRT   44 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC
Confidence            58899999999988888877898 89999999999888877664

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.11  E-value=0.19  Score=38.40  Aligned_cols=63  Identities=19%  Similarity=0.282  Sum_probs=40.1

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +++|+|+ |++|..++..+... . +|+.+++++..          ...|-.+   ++..+.+.+.. +++|+++.+.|.
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~-~vi~~~r~~~~----------~~~D~~~---~~~~~~~~~~~-~~id~lv~~ag~   65 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-H-EVITAGRSSGD----------VQVDITD---PASIRALFEKV-GKVDAVVSAAGK   65 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-C-cEEEEecCCCc----------eEecCCC---hHHHHHHHHhc-CCCCEEEECCCC
Confidence            6899986 89999887777655 6 89998877531          1234333   33333332222 368899887764

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.11  E-value=0.11  Score=42.73  Aligned_cols=43  Identities=26%  Similarity=0.326  Sum_probs=36.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  117 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~  117 (258)
                      +|.++|.|.+|...++-+...|. +|++.++++++.+.+.+.|+
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~~g~   44 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAEEGA   44 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCC
Confidence            58899999999988888887898 89999999988887777664

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.11  E-value=0.024  Score=42.06  Aligned_cols=43  Identities=23%  Similarity=0.319  Sum_probs=37.0

Q ss_pred             CCCEEEEEccC-HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025101           71 VGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  114 (258)
Q Consensus        71 ~g~~vlI~G~g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~  114 (258)
                      .|..|+++|+| ++|...++-+...|+ +|+++.|.++.+..+-+
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~   49 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVK   49 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHh
Confidence            57889999985 899999999999999 99999999988776544

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.10  E-value=0.043  Score=42.84  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=29.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE-EcCCc
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIG-VDVIS  106 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~-~~~~~  106 (258)
                      -.|.+|+|.|.|.+|+.+++.+...|. ++++ .+.+.
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~-~vV~vsD~~g   57 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGG-KVLAVSDPDG   57 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence            368899999999999999999999998 5555 45444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.10  E-value=0.045  Score=43.45  Aligned_cols=79  Identities=16%  Similarity=0.158  Sum_probs=47.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEE-EcCCcchHHH----HHhcCCce-E--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKFEI----GKRFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~-~~~~~~~~~~----~~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      ++.++||+|+ |.+|..+++.+...|+ +|++ ..++.++.+.    ++..+... +  .|..+  .+++...+.+... 
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   79 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGD--VEKIKEMFAQIDEE   79 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 8999999999988999 7765 4666555432    22334321 2  23222  1222222322221 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|.+.|.
T Consensus        80 ~~~id~vi~~ag~   92 (250)
T PRK08063         80 FGRLDVFVNNAAS   92 (250)
T ss_pred             cCCCCEEEECCCC
Confidence             268999998873

>PLN00016 RNA-binding protein; Provisional

Probab=96.10  E-value=0.081  Score=45.07  Aligned_cols=95  Identities=16%  Similarity=0.126  Sum_probs=59.2

Q ss_pred             CCEEEEE----cc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHH-----------HHhcCCceEEcCCCCCCccHHHHH
Q 025101           72 GSTVVIF----GL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-----------GKRFGVTEFVNSKNCGDKSVSQII  135 (258)
Q Consensus        72 g~~vlI~----G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~-----------~~~~g~~~vi~~~~~~~~~~~~~i  135 (258)
                      ..+|||+    |+ |-+|..+++.+...|. +|++++++++....           +...|+..+.       .++.+ +
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-------~D~~d-~  122 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-------GDPAD-V  122 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-------ecHHH-H
Confidence            4689999    97 9999999988888898 99999988764321           1123343222       12222 2


Q ss_pred             HHhcCC-CCCEEEEecCChh-hHHHHHHhhhcC-CceEEEecc
Q 025101          136 IDMTDG-GADYCFECVGLAS-LVQEAYACCRKG-WGKTIVLGV  175 (258)
Q Consensus       136 ~~~~~~-~~d~v~d~~g~~~-~~~~~~~~l~~~-~G~~v~~g~  175 (258)
                      .+.... ++|+||++.+... .....++.+... -.+++.++.
T Consensus       123 ~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS  165 (378)
T PLN00016        123 KSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS  165 (378)
T ss_pred             HhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            222223 7999999876432 244555655543 136777664

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=96.10  E-value=0.012  Score=45.96  Aligned_cols=105  Identities=18%  Similarity=0.246  Sum_probs=63.3

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceEEcCCC-------CC----CccHHH
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKN-------CG----DKSVSQ  133 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~-------~~----~~~~~~  133 (258)
                      .....++.+|||-|+|. |+-+..|+. .|+ +|++++-++.-.+.+ ++.+.........       ..    ..++.+
T Consensus        32 ~l~~~~~~rvLvPgCG~-g~D~~~La~-~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~  108 (218)
T PF05724_consen   32 SLALKPGGRVLVPGCGK-GYDMLWLAE-QGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE  108 (218)
T ss_dssp             HHTTSTSEEEEETTTTT-SCHHHHHHH-TTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTT
T ss_pred             hcCCCCCCeEEEeCCCC-hHHHHHHHH-CCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccccc
Confidence            35667888999999985 677777776 599 999999999888776 3343211111000       00    001111


Q ss_pred             HHHHhcCCCCCEEEEecCC--------hhhHHHHHHhhhcCCceEEEecc
Q 025101          134 IIIDMTDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       134 ~i~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                       +.....|.||+|+|...-        +.-++.+.+.++|+ |++.++..
T Consensus       109 -l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~-g~~lLi~l  156 (218)
T PF05724_consen  109 -LPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG-GRGLLITL  156 (218)
T ss_dssp             -GGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE-EEEEEEEE
T ss_pred             -CChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC-CcEEEEEE
Confidence             111111269999996543        22367888899999 99655553

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=96.09  E-value=0.044  Score=46.33  Aligned_cols=81  Identities=21%  Similarity=0.261  Sum_probs=47.7

Q ss_pred             CCCCEEEEEcc-CHHHHH--HHHHHHHcCCCeEEEEcCCcc--h--------------HHHHHhcCCc-eEEcCCCCCCc
Q 025101           70 EVGSTVVIFGL-GSIGLA--VAEGARLCGATRIIGVDVISE--K--------------FEIGKRFGVT-EFVNSKNCGDK  129 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~--a~~l~~~~g~~~v~~~~~~~~--~--------------~~~~~~~g~~-~vi~~~~~~~~  129 (258)
                      .-|+++||+|+ +++|++  .++.+ ..|+ +|++++...+  +              .+.+++.|.. ..++-+-.+++
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E  116 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE  116 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence            34579999986 799999  56666 7899 8888764221  1              2234556643 22322221122


Q ss_pred             cHH---HHHHHhcCCCCCEEEEecCCh
Q 025101          130 SVS---QIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus       130 ~~~---~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      ...   +.+.+.. |++|+++.+.+.+
T Consensus       117 ~v~~lie~I~e~~-G~IDiLVnSaA~~  142 (398)
T PRK13656        117 IKQKVIELIKQDL-GQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHHhc-CCCCEEEECCccC
Confidence            232   3333333 3799999998876

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=96.09  E-value=0.05  Score=44.59  Aligned_cols=57  Identities=21%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             hhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEE---cCCcchHHHHHhcCCceEEc
Q 025101           65 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV---DVISEKFEIGKRFGVTEFVN  122 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~---~~~~~~~~~~~~~g~~~vi~  122 (258)
                      ....+.+|.+.||=.. |.+|..++-+++..|+ +++++   ..+.||...++.+|+..+..
T Consensus        96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~t  156 (362)
T KOG1252|consen   96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIILT  156 (362)
T ss_pred             HcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEec
Confidence            3456889999999985 8999999999999999 88877   34557888899999865543

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.08  E-value=0.045  Score=46.18  Aligned_cols=102  Identities=23%  Similarity=0.327  Sum_probs=65.5

Q ss_pred             hhcCCCCCCEEEEEc-c-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce--EEcCCCCCCccHHHHHH
Q 025101           65 RTANVEVGSTVVIFG-L-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE--FVNSKNCGDKSVSQIII  136 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G-~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~--vi~~~~~~~~~~~~~i~  136 (258)
                      ....+++|+.||=.- + |+=-..+++++..-|. .|++++.++.|.+.+    +.+|...  +++...   ..+..   
T Consensus       150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~-iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~---~~~~~---  222 (355)
T COG0144         150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGA-IVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA---RRLAE---  222 (355)
T ss_pred             HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc---ccccc---
Confidence            467889999999883 3 5433444455554456 689999999998776    4588764  333322   11111   


Q ss_pred             HhcCC-CCCEEE-E--ecCChh-------------------------hHHHHHHhhhcCCceEEEec
Q 025101          137 DMTDG-GADYCF-E--CVGLAS-------------------------LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       137 ~~~~~-~~d~v~-d--~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ....+ .||.|+ |  |+|...                         .+..++..++++ |+++...
T Consensus       223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G-G~LVYST  288 (355)
T COG0144         223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG-GVLVYST  288 (355)
T ss_pred             cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEc
Confidence            11122 499987 6  666522                         577889999998 9987544

>PLN02928 oxidoreductase family protein

Probab=96.08  E-value=0.063  Score=45.16  Aligned_cols=95  Identities=23%  Similarity=0.381  Sum_probs=57.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-----CceEEcCCCCCCccHHHHHHHhcCCCCCE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-----VTEFVNSKNCGDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-----~~~vi~~~~~~~~~~~~~i~~~~~~~~d~  145 (258)
                      .|+++.|+|.|.+|..+++.++.+|. +|++.+++..+... ..++     ...+.+... ...++.+.+.     ..|+
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~L~ell~-----~aDi  229 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPE-DGLLIPNGDVDDLVDEKG-GHEDIYEFAG-----EADI  229 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhh-hhhccccccccccccccC-cccCHHHHHh-----hCCE
Confidence            57899999999999999999999999 99999886432211 1110     000110000 0123333332     4788


Q ss_pred             EEEecCCh-h----hHHHHHHhhhcCCceEEEec
Q 025101          146 CFECVGLA-S----LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       146 v~d~~g~~-~----~~~~~~~~l~~~~G~~v~~g  174 (258)
                      |+.+.... .    .-...+..++++ ..+|.++
T Consensus       230 Vvl~lPlt~~T~~li~~~~l~~Mk~g-a~lINva  262 (347)
T PLN02928        230 VVLCCTLTKETAGIVNDEFLSSMKKG-ALLVNIA  262 (347)
T ss_pred             EEECCCCChHhhcccCHHHHhcCCCC-eEEEECC
Confidence            88876532 1    123566777777 7777665

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.07  E-value=0.05  Score=43.63  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=47.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH-Hh----cCCc-eE--EcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG-KR----FGVT-EF--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~~-~~----~g~~-~v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      +|+++||+|+ +++|.+++..+...|+ +|+.+.+ ++++.+.+ ++    .+.. ..  .|..+  .+++.+.+.+...
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~   83 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILE--PETYKELFKKIDE   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHH
Confidence            5789999987 8999999998888999 8887754 44443322 22    2322 12  23333  1233333333222


Q ss_pred             --CCCCEEEEecC
Q 025101          141 --GGADYCFECVG  151 (258)
Q Consensus       141 --~~~d~v~d~~g  151 (258)
                        +.+|+++.+.|
T Consensus        84 ~~g~id~lv~nAg   96 (260)
T PRK08416         84 DFDRVDFFISNAI   96 (260)
T ss_pred             hcCCccEEEECcc
Confidence              36999998875

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=96.07  E-value=0.095  Score=43.23  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=30.3

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 025101           71 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKF  109 (258)
Q Consensus        71 ~g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~~~~~  109 (258)
                      .|+++||+|+   .++|.++++.+...|+ +|++ .+..+++
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~-~~~~~~l   47 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGA-EILV-GTWVPAL   47 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEE-EeCcchh
Confidence            5889999987   7999999999999999 8887 4454443

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=96.07  E-value=0.12  Score=43.64  Aligned_cols=94  Identities=19%  Similarity=0.234  Sum_probs=61.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHc--CCCeEEEEc--CCcchH-HHHHhcCCceEEcCCCCCCccHHH-------------
Q 025101           73 STVVIFGL-GSIGLAVAEGARLC--GATRIIGVD--VISEKF-EIGKRFGVTEFVNSKNCGDKSVSQ-------------  133 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~--g~~~v~~~~--~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~~-------------  133 (258)
                      ++|.|+|+ |++|..++...+..  .+ +|++++  ++.++. +.++++++..+.-.++    ....             
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f-~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~----~~~~~l~~~l~~~~~~v   76 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRF-RVVALSAGKNVELLAEQAREFRPKYVVVADE----EAAKELKEALAAAGIEV   76 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCcccc-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----HHHHHHHHhhccCCceE
Confidence            47899996 99999999988765  56 787775  333333 4556788765543332    1122             


Q ss_pred             -----HHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEE
Q 025101          134 -----IIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIV  172 (258)
Q Consensus       134 -----~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  172 (258)
                           .+.++... .+|+|+.++++...+...+..++.| -++.+
T Consensus        77 ~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL  120 (385)
T PRK05447         77 LAGEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL  120 (385)
T ss_pred             EEChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence                 22223333 6999999998876688888888875 55443

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.06  E-value=0.1  Score=40.13  Aligned_cols=35  Identities=31%  Similarity=0.455  Sum_probs=30.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .+.+|+|+|+|++|.-.++-+-..|.++++.++..
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            35789999999999999999999999888888654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=96.05  E-value=0.075  Score=44.10  Aligned_cols=39  Identities=18%  Similarity=0.062  Sum_probs=32.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  110 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~  110 (258)
                      .|++|||+|+ |.+|..+++.+...|+ +|+++.++.++.+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~   43 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTDRK   43 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcchH
Confidence            4789999986 9999999988888899 8988887766543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.05  E-value=0.1  Score=36.88  Aligned_cols=94  Identities=23%  Similarity=0.340  Sum_probs=51.5

Q ss_pred             EEEEEcc-CHHHHHHHHHHHH-cCCCeEEE-EcCCcch---HHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           74 TVVIFGL-GSIGLAVAEGARL-CGATRIIG-VDVISEK---FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~-~g~~~v~~-~~~~~~~---~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      +|.|+|+ |-+|.++++.+.. -+. .+.+ ++++++.   .+.-.-.|....    .   ....+.+.+... .+|+++
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~-~lv~~v~~~~~~~~g~d~g~~~~~~~~----~---~~v~~~l~~~~~-~~DVvI   72 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGF-ELVGAVDRKPSAKVGKDVGELAGIGPL----G---VPVTDDLEELLE-EADVVI   72 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTE-EEEEEEETTTSTTTTSBCHHHCTSST-----S---SBEBS-HHHHTT-H-SEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCc-EEEEEEecCCcccccchhhhhhCcCCc----c---cccchhHHHhcc-cCCEEE
Confidence            6889998 9999999999987 577 5444 4555411   111111221100    0   001112333333 389999


Q ss_pred             EecCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          148 ECVGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       148 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      |.+ .+..+...++.+... |.-+.+|+.+.
T Consensus        73 DfT-~p~~~~~~~~~~~~~-g~~~ViGTTG~  101 (124)
T PF01113_consen   73 DFT-NPDAVYDNLEYALKH-GVPLVIGTTGF  101 (124)
T ss_dssp             EES--HHHHHHHHHHHHHH-T-EEEEE-SSS
T ss_pred             EcC-ChHHhHHHHHHHHhC-CCCEEEECCCC
Confidence            999 444466666666666 77777886643

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.05  E-value=0.036  Score=44.24  Aligned_cols=96  Identities=14%  Similarity=0.131  Sum_probs=63.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC----c------eEEcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV----T------EFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~----~------~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      ..++|||+|.|. |..+-++++.....+|.+++-+++-.+.++++-.    .      +++.      .+-...+++...
T Consensus        76 ~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~------~Dg~~~l~~~~~  148 (246)
T PF01564_consen   76 NPKRVLIIGGGD-GGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIII------GDGRKFLKETQE  148 (246)
T ss_dssp             ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEE------STHHHHHHTSSS
T ss_pred             CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEE------hhhHHHHHhccC
Confidence            679999998754 6667788887666699999999988888877321    1      2221      345555655433


Q ss_pred             CCCCEEE-EecCC---------hhhHHHHHHhhhcCCceEEEec
Q 025101          141 GGADYCF-ECVGL---------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..+|+|+ |....         ..-++.+.+.|+++ |.++.-.
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~-Gv~v~~~  191 (246)
T PF01564_consen  149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD-GVLVLQA  191 (246)
T ss_dssp             T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC-cEEEEEc
Confidence            2799998 65541         23477888999999 9887654

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>TIGR02415 23BDH acetoin reductases

Probab=96.03  E-value=0.05  Score=43.33  Aligned_cols=77  Identities=19%  Similarity=0.221  Sum_probs=47.9

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-eE--EcCCCCCCccHHHHHHHhcC--CC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--GG  142 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~~  142 (258)
                      ++++|+|+ |++|..+++.+...|+ +|+.+.+++++.+.+    ++.+.. .+  .|-.+  .+++.+.+.+...  +.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD--KDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHcCC
Confidence            36899986 8999999988888999 899998886654332    233422 12  23322  1222222333221  26


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|.+.|.
T Consensus        78 id~vi~~ag~   87 (254)
T TIGR02415        78 FDVMVNNAGV   87 (254)
T ss_pred             CCEEEECCCc
Confidence            8999998874

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK14968 putative methyltransferase; Provisional

Probab=96.02  E-value=0.08  Score=40.08  Aligned_cols=43  Identities=30%  Similarity=0.475  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  114 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~  114 (258)
                      ..+++++|..|+|. |..+..+++. +. ++++++.+++..+.+++
T Consensus        21 ~~~~~~vLd~G~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~   63 (188)
T PRK14968         21 DKKGDRVLEVGTGS-GIVAIVAAKN-GK-KVVGVDINPYAVECAKC   63 (188)
T ss_pred             ccCCCEEEEEcccc-CHHHHHHHhh-cc-eEEEEECCHHHHHHHHH
Confidence            36788999998764 6677777776 76 99999999887776643

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.02  E-value=0.028  Score=45.20  Aligned_cols=76  Identities=17%  Similarity=0.287  Sum_probs=48.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHHHHHHhcC--CCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~~~d~v  146 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.   .... ...|..+  .+++.+.+.+...  +.+|++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~---~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~id~l   81 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQH---ENYQFVPTDVSS--AEEVNHTVAEIIEKFGRIDGL   81 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcccccc---CceEEEEccCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4688999986 8999999999988999 89998877655321   1111 1123333  1223333332221  268999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      +.+.|.
T Consensus        82 i~~Ag~   87 (266)
T PRK06171         82 VNNAGI   87 (266)
T ss_pred             EECCcc
Confidence            998873

>PRK05855 short chain dehydrogenase; Validated

Probab=96.01  E-value=0.037  Score=49.73  Aligned_cols=79  Identities=20%  Similarity=0.253  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-eE--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      .+.++||+|+ |++|..+++.+...|+ +|++++++.++.+.+    ++.|.. .+  .|..+  .+...+.+.+...  
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~  390 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSD--ADAMEAFAEWVRAEH  390 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            4678999987 8999999888888999 899999988776543    233432 12  23333  1222223332221  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|++|++.|.
T Consensus       391 g~id~lv~~Ag~  402 (582)
T PRK05855        391 GVPDIVVNNAGI  402 (582)
T ss_pred             CCCcEEEECCcc
Confidence            369999998875

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.01  E-value=0.081  Score=42.02  Aligned_cols=78  Identities=15%  Similarity=0.117  Sum_probs=46.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH-HhcCCc-eEE--cCCCCCCccHHHHH---HHhcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQII---IDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i---~~~~~~  141 (258)
                      .++++||+|+ |++|..++..+...|+ +|+.+.+ ++++.+.+ .+++.. .++  |..+  .+++.+.+   .+..+.
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~   80 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYHQSEDAAEALADELGDRAIALQADVTD--REQVQAMFATATEHFGK   80 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHHhCC
Confidence            3578999986 8999999998888899 7877654 44443333 334322 112  3222  12222223   222322


Q ss_pred             CCCEEEEecC
Q 025101          142 GADYCFECVG  151 (258)
Q Consensus       142 ~~d~v~d~~g  151 (258)
                      ++|++|.+.|
T Consensus        81 ~id~li~~ag   90 (253)
T PRK08642         81 PITTVVNNAL   90 (253)
T ss_pred             CCeEEEECCC
Confidence            4999998775

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=96.00  E-value=0.14  Score=39.80  Aligned_cols=98  Identities=19%  Similarity=0.261  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEE
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYC  146 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v  146 (258)
                      +++|++||=+|+|+ |..+..+++..+. .+|++++.++..    ...++ .++..+- ......+.+.+.... .+|+|
T Consensus        49 ~~~~~~VLDlG~Gt-G~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v-~~i~~D~-~~~~~~~~i~~~~~~~~~D~V  121 (209)
T PRK11188         49 FKPGMTVVDLGAAP-GGWSQYAVTQIGDKGRVIACDILPMD----PIVGV-DFLQGDF-RDELVLKALLERVGDSKVQVV  121 (209)
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHcCCCceEEEEeccccc----CCCCc-EEEecCC-CChHHHHHHHHHhCCCCCCEE
Confidence            57889999999875 6666667776653 389999987621    11122 2332221 113334455544444 89999


Q ss_pred             EEec-----CC------------hhhHHHHHHhhhcCCceEEEec
Q 025101          147 FECV-----GL------------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       147 ~d~~-----g~------------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +...     |.            ...++.+.+.|+|+ |.++..-
T Consensus       122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG-G~~vi~~  165 (209)
T PRK11188        122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG-GSFVVKV  165 (209)
T ss_pred             ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEE
Confidence            9533     22            12467888999999 9998743

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=96.00  E-value=0.033  Score=49.05  Aligned_cols=100  Identities=15%  Similarity=0.203  Sum_probs=64.7

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc--CCc-e-EEcCCCCCCccHHHHHHHhcC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF--GVT-E-FVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~--g~~-~-vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      +...++++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++.  +.. . .+...     ++..  .....
T Consensus       260 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~-----d~~~--~~~~~  330 (475)
T PLN02336        260 DKLDLKPGQKVLDVGCGI-GGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGRKCSVEFEVA-----DCTK--KTYPD  330 (475)
T ss_pred             HhcCCCCCCEEEEEeccC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcCCCceEEEEc-----Cccc--CCCCC
Confidence            344567888999999875 6677778887788 899999998887777542  211 1 11111     1110  01112


Q ss_pred             CCCCEEEEecC-----C-hhhHHHHHHhhhcCCceEEEec
Q 025101          141 GGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.||+|+....     . ...+..+.+.|+|+ |++++..
T Consensus       331 ~~fD~I~s~~~l~h~~d~~~~l~~~~r~Lkpg-G~l~i~~  369 (475)
T PLN02336        331 NSFDVIYSRDTILHIQDKPALFRSFFKWLKPG-GKVLISD  369 (475)
T ss_pred             CCEEEEEECCcccccCCHHHHHHHHHHHcCCC-eEEEEEE
Confidence            26999986321     1 34578999999999 9988664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		1e-76
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		6e-73
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		6e-58
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		6e-58
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		6e-58
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		6e-58
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		3e-55
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		4e-55
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		5e-55
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		1e-54
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		1e-54
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		1e-54
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		2e-54
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		2e-54
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		3e-54
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		3e-54
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		3e-54
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		4e-54
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		5e-54
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		2e-52
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-52
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		4e-52
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		4e-52
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		8e-52
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		8e-52
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		4e-51
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		6e-51
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		8e-50
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		8e-50
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		3e-49
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		6e-41
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		1e-25
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		3e-11
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		3e-11
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		5e-11
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		7e-11
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		9e-11
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		5e-10
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		1e-09
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		1e-09
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		2e-09
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		2e-09
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		5e-09
3fpc_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		9e-09
1y9a_A	360	Alcohol Dehydrogenase From Entamoeba Histolotica In		1e-08
2oui_A	360	D275p Mutant Of Alcohol Dehydrogenase From Protozoa		3e-08
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		5e-08
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		8e-08
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		9e-08
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		1e-07
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		3e-07
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		7e-06
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		9e-06
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		1e-05
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		1e-05
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		2e-05
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		3e-05
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		4e-05
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		5e-05
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		5e-05
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		6e-05
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		2e-04
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		2e-04
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		3e-04

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  282 bits (722), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 127/254 (50%), Positives = 188/254 (74%), Gaps = 3/254 (1%)
Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DPT P ++ CLL CGV TG+
Sbjct: 124 MMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGL 182
Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+K+E  K+FGV EF
Sbjct: 183 GAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEF 242
Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VN K+  DK + ++I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV   G 
Sbjct: 243 VNPKD-HDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 301
Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           ++S   F+++ +G++  G+ FGG K+++ +P L+++YM+KE+++D+++TH +   EIN A
Sbjct: 302 EISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKA 360
Query: 241 FDLLIKGKCLRCVI 254
           FDLL +G CLRCV+
Sbjct: 361 FDLLHEGTCLRCVL 374

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  270 bits (690), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 123/256 (48%), Positives = 182/256 (71%), Gaps = 3/256 (1%)
Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DP  P  + CLL CGV TG+
Sbjct: 142 MMNDRKSRFS-INGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPTGL 200
Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GA W TA VE GS V +FGLG++GLAVAEGA+  GA+RIIG+D+ S+KF+  K FGVTEF
Sbjct: 201 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNFGVTEF 260
Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           +N K   ++ + Q+I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV   G 
Sbjct: 261 INPKE-HEQPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQ 319
Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           ++S   F+++ +G++  G+ FGG K++S +P L+ +Y+ KE+++D+++TH M   +IN A
Sbjct: 320 EISTRPFQLV-TGRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHNMTLADINKA 378
Query: 241 FDLLIKGKCLRCVIWM 256
           FDL+  G CLR V+ M
Sbjct: 379 FDLMHDGDCLRVVLDM 394

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  220 bits (561), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 115/254 (45%), Positives = 171/254 (67%), Gaps = 4/254 (1%)
Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MP D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 123 MP-DGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 180
Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 181 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 240
Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G 
Sbjct: 241 INPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE 299
Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN A
Sbjct: 300 EIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKA 358
Query: 241 FDLLIKGKCLRCVI 254
           F+L+  GK +R V+
Sbjct: 359 FELMHSGKSIRTVV 372

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  220 bits (561), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 115/254 (45%), Positives = 171/254 (67%), Gaps = 4/254 (1%)
Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MP D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 123 MP-DGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 180
Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 181 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 240
Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G 
Sbjct: 241 INPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE 299
Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN A
Sbjct: 300 EIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKA 358
Query: 241 FDLLIKGKCLRCVI 254
           F+L+  GK +R V+
Sbjct: 359 FELMHSGKSIRTVV 372

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  220 bits (560), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 115/254 (45%), Positives = 171/254 (67%), Gaps = 4/254 (1%)
Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MP D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 122 MP-DGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179
Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239
Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G 
Sbjct: 240 INPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE 298
Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN A
Sbjct: 299 EIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKA 357
Query: 241 FDLLIKGKCLRCVI 254
           F+L+  GK +R V+
Sbjct: 358 FELMHSGKSIRTVV 371

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  220 bits (560), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 115/254 (45%), Positives = 171/254 (67%), Gaps = 4/254 (1%)
Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           MP D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 122 MP-DGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179
Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239
Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G 
Sbjct: 240 INPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE 298
Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN A
Sbjct: 299 EIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKA 357
Query: 241 FDLLIKGKCLRCVI 254
           F+L+  GK +R V+
Sbjct: 358 FELMHSGKSIRTVV 371

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  211 bits (537), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/250 (42%), Positives = 159/250 (63%), Gaps = 4/250 (1%)
Query: 5   QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 64
           + +RF   +G  +  F+  S+FS+YTV++   V K+DP+ P +  CLL CGVSTG GAA 
Sbjct: 127 KETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAV 185
Query: 65  RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 124
            TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE  K FG T+FVN  
Sbjct: 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNP- 244
Query: 125 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 184
           N   + +SQ++  MT+GG D+  ECVG   +++ A   C KGWG ++++G       ++ 
Sbjct: 245 NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL-HDVAT 303
Query: 185 SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL 244
              +++ +G+   GS+FGG K K  +P ++K Y+DK+++LD+F+TH M  E +N A DL+
Sbjct: 304 RPIQLI-AGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLM 362
Query: 245 IKGKCLRCVI 254
             GKC+R V+
Sbjct: 363 KHGKCIRTVL 372

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  211 bits (536), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 107/258 (41%), Positives = 160/258 (62%), Gaps = 7/258 (2%)
Query: 1   MPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 56
           MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG 
Sbjct: 117 MPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGF 175
Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G
Sbjct: 176 STGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 235
Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 176
            TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV 
Sbjct: 236 ATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVP 294
Query: 177 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 295 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 353
Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  FDLL  GK +R ++
Sbjct: 354 INEGFDLLRSGKSIRTIL 371

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  211 bits (536), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/258 (41%), Positives = 160/258 (62%), Gaps = 7/258 (2%)
Query: 1   MPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 56
           MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG 
Sbjct: 117 MPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGF 175
Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G
Sbjct: 176 STGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 235
Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 176
            TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV 
Sbjct: 236 ATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVP 294
Query: 177 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 295 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 353
Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  FDLL  GK +R ++
Sbjct: 354 INEGFDLLRSGKSIRTIL 371

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  209 bits (533), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 160/258 (62%), Gaps = 7/258 (2%)
Query: 1   MPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 56
           MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG 
Sbjct: 118 MPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGF 176
Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G
Sbjct: 177 STGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 236
Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 176
            TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV 
Sbjct: 237 ATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP 295
Query: 177 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 296 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 354
Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  FDLL  G+ +R ++
Sbjct: 355 INEGFDLLRSGESIRTIL 372

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 160/258 (62%), Gaps = 7/258 (2%)
Query: 1   MPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 56
           MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG 
Sbjct: 118 MPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGF 176
Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G
Sbjct: 177 STGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 236
Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 176
            TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV 
Sbjct: 237 ATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP 295
Query: 177 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 296 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 354
Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  FDLL  G+ +R ++
Sbjct: 355 INEGFDLLRSGESIRTIL 372

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 160/258 (62%), Gaps = 7/258 (2%)
Query: 1   MPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 56
           MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG 
Sbjct: 118 MPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGF 176
Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G
Sbjct: 177 STGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 236
Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 176
            TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV 
Sbjct: 237 ATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP 295
Query: 177 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 296 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 354
Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  FDLL  G+ +R ++
Sbjct: 355 INEGFDLLRSGESIRTIL 372

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 159/258 (61%), Gaps = 7/258 (2%)
Query: 1   MPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 56
           MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG 
Sbjct: 118 MPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGF 176
Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G
Sbjct: 177 STGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 236
Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 176
            TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G +++ GV 
Sbjct: 237 ATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVITGVP 295
Query: 177 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 296 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 354
Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  FDLL  G+ +R ++
Sbjct: 355 INEGFDLLRSGESIRTIL 372

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 160/258 (62%), Gaps = 7/258 (2%)
Query: 1   MPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 56
           MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG 
Sbjct: 118 MPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGF 176
Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  ++F   K  G
Sbjct: 177 STGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVG 236
Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 176
            TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV 
Sbjct: 237 ATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP 295
Query: 177 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 296 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 354
Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  FDLL  G+ +R ++
Sbjct: 355 INEGFDLLRSGESIRTIL 372

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  208 bits (529), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 159/258 (61%), Gaps = 7/258 (2%)
Query: 1   MPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 56
           MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG 
Sbjct: 118 MPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGF 176
Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G
Sbjct: 177 STGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 236
Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 176
            TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G +++ GV 
Sbjct: 237 ATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVISGVP 295
Query: 177 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 296 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 354
Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  FDLL  G+ +R ++
Sbjct: 355 INEGFDLLRSGESIRTIL 372

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  208 bits (529), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 159/258 (61%), Gaps = 7/258 (2%)
Query: 1   MPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 56
           MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG 
Sbjct: 118 MPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGF 176
Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G
Sbjct: 177 STGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 236
Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 176
            TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV 
Sbjct: 237 ATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP 295
Query: 177 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                LS++   +L SG+   G +FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 296 PDSQNLSMNPM-LLLSGRTWKGCIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 354
Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  FDLL  G+ +R ++
Sbjct: 355 INEGFDLLRSGESIRTIL 372

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  208 bits (529), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 159/258 (61%), Gaps = 7/258 (2%)
Query: 1   MPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 56
           MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG 
Sbjct: 118 MPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGF 176
Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           STG G+A + A V  GST  +FGLG  GL+V  G +  GA RIIGVD+  +KF   K  G
Sbjct: 177 STGYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 236
Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 176
            TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV 
Sbjct: 237 ATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP 295
Query: 177 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 296 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 354
Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  FDLL  G+ +R ++
Sbjct: 355 INEGFDLLRSGESIRTIL 372

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  207 bits (528), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 159/258 (61%), Gaps = 7/258 (2%)
Query: 1   MPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 56
           MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG 
Sbjct: 118 MPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGF 176
Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           STG G+A + A V  GST  +FGLG  GL+V  G +  GA RIIGVD+  +KF   K  G
Sbjct: 177 STGYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 236
Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 176
            TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV 
Sbjct: 237 ATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP 295
Query: 177 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 296 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 354
Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  FDLL  G+ +R ++
Sbjct: 355 INEGFDLLRSGESIRTIL 372

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  207 bits (527), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 159/258 (61%), Gaps = 7/258 (2%)
Query: 1   MPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 56
           MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG 
Sbjct: 118 MPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGF 176
Query: 57  STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 116
           STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G
Sbjct: 177 STGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 236
Query: 117 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 176
            TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++ V 
Sbjct: 237 ATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVAVT 295
Query: 177 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 236
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 296 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 354
Query: 237 INSAFDLLIKGKCLRCVI 254
           IN  FDLL  G+ +R ++
Sbjct: 355 INEGFDLLRSGESIRTIL 372

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 153/252 (60%), Gaps = 3/252 (1%)
Query: 3   RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 62
           +D T RF    G+ IHHFV VS+FS+YTV+D   V K+D   P  + CL+ CG STG G+
Sbjct: 124 QDGTRRF-TCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A + A V  GST  +FGLG +GL+V  G +  GA RII VD+  +KF   K  G TE +N
Sbjct: 183 AVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
            ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV      L
Sbjct: 243 PQDY-KKPIQEVLKEMTDGGVDFSFEVIGQLDTMMASLLCCHEACGTSVIVGVPPDSQNL 301
Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           S++   +L +G+   G++FGG K+K  +P L+  +M K+  LD  +T+ + FE+IN  FD
Sbjct: 302 SINPM-LLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNVLPFEKINEGFD 360
Query: 243 LLIKGKCLRCVI 254
           LL  GK +R V+
Sbjct: 361 LLRSGKSIRTVL 372

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 151/252 (59%), Gaps = 3/252 (1%)
Query: 3   RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 62
           +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG G+
Sbjct: 124 QDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE +N
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
            ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV      L
Sbjct: 243 PQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNL 301
Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           S++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN  FD
Sbjct: 302 SINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFD 360
Query: 243 LLIKGKCLRCVI 254
           LL  GK +R V+
Sbjct: 361 LLHSGKSIRTVL 372

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  201 bits (510), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 151/252 (59%), Gaps = 3/252 (1%)
Query: 3   RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 62
           +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG G+
Sbjct: 124 QDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE +N
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
            ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV      L
Sbjct: 243 PQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNL 301
Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           S++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN  FD
Sbjct: 302 SINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFD 360
Query: 243 LLIKGKCLRCVI 254
           LL  GK +R V+
Sbjct: 361 LLHSGKSIRTVL 372

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  201 bits (510), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 151/252 (59%), Gaps = 3/252 (1%)
Query: 3   RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 62
           +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG G+
Sbjct: 124 QDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE +N
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
            ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV      L
Sbjct: 243 PQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNL 301
Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           S++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN  FD
Sbjct: 302 SINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFD 360
Query: 243 LLIKGKCLRCVI 254
           LL  GK +R V+
Sbjct: 361 LLHSGKSIRTVL 372

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  200 bits (508), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 159/251 (63%), Gaps = 3/251 (1%)
Query: 4   DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 63
           D T+RF   +G+ +HHF++ S+F+EYTV+D + V K+D   PP + CL+ CG STG GAA
Sbjct: 124 DGTTRFT-CKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAA 182
Query: 64  WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 123
            +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE     G TE ++ 
Sbjct: 183 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISP 242
Query: 124 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 183
           K+   K +S+++ +MT     Y FE +G    + +A A C   +G ++V+GV      L+
Sbjct: 243 KD-STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLT 301
Query: 184 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 243
                +L +G+   G +FGGLK++ D+P L+  ++ K+ +LD+ +TH + F++I+  F+L
Sbjct: 302 YDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFEL 360
Query: 244 LIKGKCLRCVI 254
           L  G+ +R V+
Sbjct: 361 LNSGQSIRTVL 371

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  200 bits (508), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 159/251 (63%), Gaps = 3/251 (1%)
Query: 4   DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 63
           D T+RF   +G+ +HHF++ S+F+EYTV+D + V K+D   PP + CL+ CG STG GAA
Sbjct: 124 DGTTRFT-CKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAA 182
Query: 64  WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 123
            +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE     G TE ++ 
Sbjct: 183 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISP 242
Query: 124 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 183
           K+   K +S+++ +MT     Y FE +G    + +A A C   +G ++V+GV      L+
Sbjct: 243 KD-STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLT 301
Query: 184 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 243
                +L +G+   G +FGGLK++ D+P L+  ++ K+ +LD+ +TH + F++I+  F+L
Sbjct: 302 YDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFEL 360
Query: 244 LIKGKCLRCVI 254
           L  G+ +R V+
Sbjct: 361 LNSGQSIRTVL 371

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  197 bits (501), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/252 (39%), Positives = 151/252 (59%), Gaps = 3/252 (1%)
Query: 3   RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 62
           +D TSRF   R + IHHF+ +S+FS+YTV+D   V K+D   P  + CL+ CG STG G+
Sbjct: 124 QDGTSRFT-CRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE +N
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
            ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV      L
Sbjct: 243 PQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNL 301
Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           S++   +L +G+   G++ GG K+K  +P L+  +M K+  LD  +TH + FE+IN  FD
Sbjct: 302 SMNPM-LLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINEGFD 360
Query: 243 LLIKGKCLRCVI 254
           LL  GK +R ++
Sbjct: 361 LLHSGKSIRTIL 372

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  197 bits (500), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/252 (39%), Positives = 150/252 (59%), Gaps = 3/252 (1%)
Query: 3   RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 62
           +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG G+
Sbjct: 124 QDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE +N
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
            ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV      L
Sbjct: 243 PQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNL 301
Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           S++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN  FD
Sbjct: 302 SINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFD 360
Query: 243 LLIKGKCLRCVI 254
           LL  GK +  V+
Sbjct: 361 LLHSGKSICTVL 372

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  193 bits (490), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 153/252 (60%), Gaps = 5/252 (1%)
Query: 3   RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 62
            D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG S+G GA
Sbjct: 128 EDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGA 186
Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  G T+ +N
Sbjct: 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLN 246
Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
            +   DK V  +I ++T GG DY  +C G A  ++ A  C   GWG   V+G      ++
Sbjct: 247 PREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV--DEM 303
Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           ++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH + FE IN A D
Sbjct: 304 TIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAID 362
Query: 243 LLIKGKCLRCVI 254
           L+ +GK +R ++
Sbjct: 363 LMKEGKSIRTIL 374

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  193 bits (490), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 153/252 (60%), Gaps = 5/252 (1%)
Query: 3   RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 62
            D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG S+G GA
Sbjct: 128 EDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGA 186
Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  G T+ +N
Sbjct: 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLN 246
Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
            +   DK V  +I ++T GG DY  +C G A  ++ A  C   GWG   V+G      ++
Sbjct: 247 PREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV--DEM 303
Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           ++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH + FE IN A D
Sbjct: 304 TIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAID 362
Query: 243 LLIKGKCLRCVI 254
           L+ +GK +R ++
Sbjct: 363 LMKEGKSIRTIL 374

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  191 bits (486), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 151/252 (59%), Gaps = 3/252 (1%)
Query: 3   RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 62
            D+TSRF   +G+ ++HF   S+FS+YTV+   ++ K+D      R CLL CG STG GA
Sbjct: 131 EDKTSRFT-CKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGA 189
Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A   A V  GST  +FGLG +GL+   G +  GA+RIIG+D+ SEKF   K  G T+ +N
Sbjct: 190 AINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLN 249
Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
            ++   K + ++II++T GG D+  +C G +  ++ A  C   GWG    +GV      L
Sbjct: 250 PRDL-HKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGL 308
Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           ++   E++  G+ + G+ FGG K+   IP L+  Y +K+  LD  VTH + F++I+ AFD
Sbjct: 309 TVFPEELI-IGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFD 367
Query: 243 LLIKGKCLRCVI 254
           L+ +GK +R ++
Sbjct: 368 LMNQGKSIRTIL 379

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  164 bits (414), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 146/251 (58%), Gaps = 5/251 (1%)
Query: 4   DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 63
           D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP  P   +CL+ CG +TG GAA
Sbjct: 126 DMTSRF-TCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAP-LESCLIGCGFATGYGAA 183
Query: 64  WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 123
             TA V  GST  +FGLG +G +   G +  GA+RIIGV    +KF      G TE +N 
Sbjct: 184 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNP 243
Query: 124 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 183
           K+  DK + ++I + T+GG DY  EC G    +  A      G G T+VLG+  P ++  
Sbjct: 244 KDY-DKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASP-NERL 301
Query: 184 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 243
                +L +G+ L GS+FGG K + ++  L+  YM K++ ++  V+ ++  ++IN AF+L
Sbjct: 302 PLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFEL 360
Query: 244 LIKGKCLRCVI 254
           L  G+ +R ++
Sbjct: 361 LSSGQGVRSIM 371

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 5/242 (2%)
Query: 13  RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVG 72
           +G    HF + SSF+ Y +    + VKV   VP      L CG+ TG GA      V   
Sbjct: 132 QGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPA 191
Query: 73  STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVS 132
           S+ V +G G++GL+    A++CGA+ II VD++  + E+ K+ G T  +NSK    +   
Sbjct: 192 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKT---QDPV 248
Query: 133 QIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS 192
             I ++TDGG ++  E  G   ++++         GK  V+G  Q G+       ++L  
Sbjct: 249 AAIKEITDGGVNFALESTGSPEILKQGVDALGI-LGKIAVVGAPQLGTTAQFDVNDLLLG 307
Query: 193 GKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRC 252
           GK ++G + G    K  IP L++ Y   +   D+ V     F+EIN A     KG  L+ 
Sbjct: 308 GKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITLKP 366
Query: 253 VI 254
           +I
Sbjct: 367 II 368

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 18/219 (8%)
Query: 32  LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 91
           +++AH+ K    +P   A ++   ++TG   A   A++E+G+TV + G+G +GL    GA
Sbjct: 131 MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGA 186
Query: 92  RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV 150
           +L GA RII V       +  K +G T+ VN K   D  +   I+++T+G G D      
Sbjct: 187 KLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYK---DGPIESQIMNLTEGKGVDAAIIAG 243
Query: 151 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE----VLHSGKILMGSLFGGLKA 206
           G A ++  A    + G G    +     G  L +   E    + H  K + G L  G + 
Sbjct: 244 GNADIMATAVKIVKPG-GTIANVNYFGEGEVLPVPRLEWGCGMAH--KTIKGGLCPGGRL 300
Query: 207 KSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 244
           + +  I L  Y  K ++  K VTH  + F+ I  AF L+
Sbjct: 301 RMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAFMLM 337

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 23/247 (9%)
Query: 8   RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 67
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 68  NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 127
           ++E+G+TV + G+G +GL    GA+L GA RII V       +  K +G T+ VN K   
Sbjct: 163 DIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYK--- 219
Query: 128 DKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 186
           D  +   I+++T+G G D      G A ++  A    + G G    +     G  L +  
Sbjct: 220 DGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEVLDVPR 278
Query: 187 FE----VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAF 241
            E    + H  K + G L  G + + +  I L  Y  K ++  K VTH  + F+ I  AF
Sbjct: 279 LEWGCGMAH--KTIKGGLCPGGRLRMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAF 334
Query: 242 DLLIKGK 248
            +L+K K
Sbjct: 335 -MLMKDK 340

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 33/248 (13%)
Query: 2   PRDQTSRF---KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCG 55
           P+ Q  R    ++LR   IH       F+EY ++      ++  T+ P        L+C 
Sbjct: 115 PQCQAGRVNLCRNLRAIGIHRD---GGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACC 171
Query: 56  VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 115
           +          + ++ GSTV I G G IGL   + ARL GAT +I     + K  + +  
Sbjct: 172 LH-----GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV 226
Query: 116 GVTEFVNSKNCGDKSVSQII---IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 172
           G T  V+  + GD  V + I   + +  GG D   EC G+A  V+++    + G G  ++
Sbjct: 227 GATATVD-PSAGD--VVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVI 282
Query: 173 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD----KELELDKFV 228
           LGV   G ++ +  F++L     ++GS           P + +R  D      +E+D+ +
Sbjct: 283 LGVLPQGEKVEIEPFDILFRELRVLGSFIN--------PFVHRRAADLVATGAIEIDRXI 334
Query: 229 THEMKFEE 236
           +  +  +E
Sbjct: 335 SRRISLDE 342

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 18/219 (8%)
Query: 32  LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 91
           +++AH+ K    +P   A ++   ++TG   A   A++E+GS+VV+ G+G++GL    GA
Sbjct: 131 MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGA 186
Query: 92  RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV 150
           +L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G D      
Sbjct: 187 KLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIVDQVMKLTNGKGVDRVIMAG 243
Query: 151 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL----HSGKILMGSLFGGLKA 206
           G +  + +A    + G    I+  ++  GS  +L    V      + K + G L  G + 
Sbjct: 244 GGSETLSQAVKMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRL 300
Query: 207 KSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 244
           + +  I L  Y  K ++  K VTH  + F+ I  AF L+
Sbjct: 301 RMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAFMLM 337

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 18/219 (8%)
Query: 32  LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 91
           +++AH+ K    +P   A ++   ++TG   A   A++++GS+VV+ G+G++GL    GA
Sbjct: 131 MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGIAGA 186
Query: 92  RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV 150
           +L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G D      
Sbjct: 187 KLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIVDQVMKLTNGKGVDRVIMAG 243
Query: 151 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL----HSGKILMGSLFGGLKA 206
           G +  + +A +  + G    I+  ++  GS  +L    V      + K + G L  G + 
Sbjct: 244 GGSETLSQAVSMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRL 300
Query: 207 KSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 244
           + +  I L  Y  K ++  K VTH  + F+ I  AF L+
Sbjct: 301 RMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAFMLM 337

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 18/231 (7%)
Query: 26  FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 83
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++E+G+TV + G+G +
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIELGATVAVLGIGPV 178
Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           GL    GA+L GA RII V       +  K +G T+ VN K   D  +   I+++T+G G
Sbjct: 179 GLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYK---DGPIESQIMNLTEGKG 235
Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE----VLHSGKILMG 198
            D      G A ++  A    + G G    +     G  L +   E    + H  K + G
Sbjct: 236 VDAAIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEVLPVPRLEWGCGMAH--KTIKG 292
Query: 199 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 248
            L  G + +++  +L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 293 GLCPGGRLRAE--MLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 18/231 (7%)
Query: 26  FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 83
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++++GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGAV 178
Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           GL    GA+L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G
Sbjct: 179 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKN---GHIVDQVMKLTNGKG 235
Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL----HSGKILMG 198
            D      G +  + +A +  + G    I+  ++  GS  +L    V      + K + G
Sbjct: 236 VDRVIMAGGGSETLSQAVSMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKG 292
Query: 199 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 248
            L  G + +++  +L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 293 GLCPGGRLRAE--MLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 18/231 (7%)
Query: 26  FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 83
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++++GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGAV 178
Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           GL    GA+L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G
Sbjct: 179 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKN---GHIVDQVMKLTNGKG 235
Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL----HSGKILMG 198
            D      G +  + +A +  + G    I+  ++  GS  +L    V      + K + G
Sbjct: 236 VDRVIMAGGGSETLSQAVSMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKG 292
Query: 199 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 248
            L  G + +++  +L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 293 GLCPGGRLRAE--MLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 13/236 (5%)
Query: 26  FSEYTVLDI-AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG 84
           +S + VLD    V+KV      +   +  C  +T   A         G TVVI G G +G
Sbjct: 149 YSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLG 208
Query: 85  LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GA 143
           L     AR  GA  +I +     + ++ +  G    +N +    +   + I+D+T G GA
Sbjct: 209 LFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGA 268
Query: 144 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG 203
           D+  E  G +  + E     R+G G   V GV  P   +    +E L    +L  + F G
Sbjct: 269 DFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWL----VLKNATFKG 323
Query: 204 LKAKSDIPILLKRY----MDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW 255
           +   SD    +K       + +L L K +TH +  +E N A +L+   + L+ +++
Sbjct: 324 IWV-SDTSHFVKTVSITSRNYQL-LSKLITHRLPLKEANKALELMESREALKVILY 377

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 18/231 (7%)
Query: 26  FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 83
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++E+GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAV 178
Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           GL    GA+L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G
Sbjct: 179 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIEDQVMKLTNGKG 235
Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL----HSGKILMG 198
            D      G +  + +A    + G    I+  ++  GS  +L    V      + K + G
Sbjct: 236 VDRVIMAGGGSETLSQAVKMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKG 292
Query: 199 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 248
            L  G + +++   L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 293 GLCPGGRLRAE--RLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 15/224 (6%)
Query: 26  FSEYTVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG 84
           F+EY V D   V  +   +  N  A +L  GV+  V    +  + + G  VVI G+G +G
Sbjct: 145 FAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT--VYKGLKVTDTKPGDWVVISGIGGLG 202
Query: 85  LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD 144
               + AR  G   +  VD+   K ++ +R G T  VN+K   D +    I   TDGGA 
Sbjct: 203 HMAVQYARAMG-LNVAAVDIDDRKLDLARRLGATVTVNAKTVADPAA--YIRKETDGGAQ 259
Query: 145 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL 204
                       ++A     +  G T+ L    PG    LS F ++ +G  + GS+ G  
Sbjct: 260 GVLVTAVSPKAFEQALGMVAR--GGTVSLNGLPPGD-FPLSIFNMVLNGVTVRGSIVG-- 314
Query: 205 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
             + D+   L    D ++   K      K E+IN+ FD + +G 
Sbjct: 315 -TRLDLQESLDFAADGKV---KATIQTGKLEDINAIFDDMRQGN 354

>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By E. Histolytica Adh Length = 352

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 102/221 (46%), Gaps = 15/221 (6%)
Query: 32  LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 91
           +++AH+ K    +P   A ++   ++TG   A   AN+++G TV + G+G +GL    GA
Sbjct: 131 MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGA 186
Query: 92  RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV 150
              GA RI  V       +I   +G T+ +N KN GD  + + I+  TDG G D      
Sbjct: 187 NHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN-GD--IVEQILKATDGKGVDKVVIAG 243
Query: 151 GLASLVQEAYACCRKG--WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS 208
           G      +A    + G   G    LG +     +  S + V    K + G L  G + + 
Sbjct: 244 GDVHTFAQAVKMIKPGSDIGNVNYLG-EGDNIDIPRSEWGVGMGHKHIHGGLCPGGRLRM 302
Query: 209 DIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 248
           +  I L  Y  K ++  K VTH  + F+ I  AF +L+K K
Sbjct: 303 ERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAF-MLMKDK 340

>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In Complex With Cacodylate Length = 360

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 104/240 (43%), Gaps = 27/240 (11%)
Query: 24  SSFSEYTVLDIAHVVKVDPT-------VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVV 76
           S+F +    ++ HV + D         + P  A +LS  V+TG   A   AN+++G TV 
Sbjct: 113 SNFKDGVFSEVFHVNEADANLALLPRDIKPEDAVMLSDMVTTGFHGA-ELANIKLGDTVC 171
Query: 77  IFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIII 136
           + G+G +GL    GA   GA RI  V       +I   +G T+ +N KN GD  + + I+
Sbjct: 172 VIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN-GD--IVEQIL 228
Query: 137 DMTDG-GADYCFECVGLASLVQEAYACCRKG--WGKTIVLG----VDQPGSQLSLSSFEV 189
             TDG G D      G      +A    + G   G    LG    +D P S+  +     
Sbjct: 229 KATDGKGVDKVVIAGGXVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGH- 287
Query: 190 LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 248
               K + G L  G + + +   L       +L+  K +TH  +  E++  A  +L+K K
Sbjct: 288 ----KHIHGGLTPGGRVRME--KLASLISTGKLDTSKLITHRFEGLEKVEDAL-MLMKNK 340

>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa Entamoeba Histolytica Length = 360

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 103/236 (43%), Gaps = 19/236 (8%)
Query: 24  SSFSEYTVLDIAHVVKVDPT-------VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVV 76
           S+F +    ++ HV + D         + P  A +LS  V+TG   A   AN+++G TV 
Sbjct: 113 SNFKDGVFSEVFHVNEADANLALLPRDIKPEDAVMLSDMVTTGFHGA-ELANIKLGDTVC 171
Query: 77  IFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIII 136
           + G+G +GL    GA   GA RI  V       +I   +G T+ +N KN GD  + + I+
Sbjct: 172 VIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN-GD--IVEQIL 228
Query: 137 DMTDG-GADYCFECVGLASLVQEAYACCRKG--WGKTIVLGVDQPGSQLSLSSFEVLHSG 193
             TDG G D      G      +A    + G   G    LG +     +  S + V    
Sbjct: 229 KATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLG-EGDNIPIPRSEWGVGMGH 287
Query: 194 KILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 248
           K + G L  G + + +   L       +L+  K +TH  +  E++  A  +L+K K
Sbjct: 288 KHIHGGLTPGGRVRME--KLASLISTGKLDTSKLITHRFEGLEKVEDAL-MLMKNK 340

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 19/225 (8%)
Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG 84
           ++EY      +VVK+   +    A  + C GV+T    A +    + G  V I+G+G +G
Sbjct: 120 YAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY--KALKVTGAKPGEWVAIYGIGGLG 177
Query: 85  LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS-KNCGDKSVSQIIIDMTDGGA 143
               + A+  G   ++ VD+  EK E+ K  G    VN  K    K + + +     GG 
Sbjct: 178 HVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV-----GGV 231
Query: 144 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG 203
                        Q AY   R+G G  +++G+  P  ++ +  F+ + +G  ++GS+ G 
Sbjct: 232 HAAVVTAVSKPAFQSAYNSIRRG-GACVLVGL--PPEEMPIPIFDTVLNGIKIIGSIVG- 287
Query: 204 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
              + D+   L+   + ++   K +      E+IN  FD ++KG+
Sbjct: 288 --TRKDLQEALQFAAEGKV---KTIIEVQPLEKINEVFDRMLKGQ 327

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 19/225 (8%)
Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG 84
           ++EY      +VVK+   +    A  + C GV+T    A +    + G  V I+G+G  G
Sbjct: 120 YAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY--KALKVTGAKPGEWVAIYGIGGFG 177
Query: 85  LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS-KNCGDKSVSQIIIDMTDGGA 143
               + A+  G   ++ VD+  EK E+ K  G    VN  K    K + + +     GG 
Sbjct: 178 HVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV-----GGV 231
Query: 144 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG 203
                        Q AY   R+G G  +++G+  P  ++ +  F+ + +G  ++GS+ G 
Sbjct: 232 HAAVVTAVSKPAFQSAYNSIRRG-GACVLVGL--PPEEMPIPIFDTVLNGIKIIGSIVG- 287
Query: 204 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
              + D+   L+   + ++   K +      E+IN  FD ++KG+
Sbjct: 288 --TRKDLQEALQFAAEGKV---KTIIEVQPLEKINEVFDRMLKGQ 327

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 18/226 (7%)
Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG 84
            +E  ++   + VKV   + P  A  ++C GV+T    A + + V+ G   VIFG G +G
Sbjct: 119 MAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTY--KAIKVSGVKPGDWQVIFGAGGLG 176
Query: 85  -LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
            LA+     + GA ++I VD+  +K  + K+ G    +NS   GD +    I  +T G G
Sbjct: 177 NLAIQYAKNVFGA-KVIAVDINQDKLNLAKKIGADVTINS---GDVNPVDEIKKITGGLG 232
Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 202
                 C  +A +  E      K  GK + + V  P ++++LS   V+  G  + GSL G
Sbjct: 233 VQSAIVC-AVARIAFEQAVASLKPMGKMVAVAV--PNTEMTLSVPTVVFDGVEVAGSLVG 289
Query: 203 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
               + D+    +   + ++   K +    K EEIN   D +  GK
Sbjct: 290 ---TRLDLAEAFQFGAEGKV---KPIVATRKLEEINDIIDEMKAGK 329

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 18/226 (7%)
Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG 84
            +E  ++   + VKV   + P  A  ++C GV+T    A + + V+ G   VIFG G +G
Sbjct: 119 MAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTY--KAIKVSGVKPGDWQVIFGAGGLG 176
Query: 85  -LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
            LA+     + GA ++I VD+  +K  + K+ G    +NS   GD +    I  +T G G
Sbjct: 177 NLAIQYAKNVFGA-KVIAVDINQDKLNLAKKIGADVIINS---GDVNPVDEIKKITGGLG 232
Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 202
                 C  +A +  E      K  GK + + +  P ++++LS   V+  G  + GSL G
Sbjct: 233 VQSAIVC-AVARIAFEQAVASLKPMGKMVAVAL--PNTEMTLSVPTVVFDGVEVAGSLVG 289
Query: 203 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
               + D+    +   + ++   K +    K EEIN   D +  GK
Sbjct: 290 ---TRLDLAEAFQFGAEGKV---KPIVATRKLEEINDIIDEMKAGK 329

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 7/192 (3%)
Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A R A V +G+ V++ G G IGL     A+  GA +++  D+ + +    K  G    + 
Sbjct: 162 ACRRAGVTLGNKVLVCGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILE 221
Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
             N   + +++ +  +     +   EC G+ + +Q        G G  +++G+   GS+ 
Sbjct: 222 ISNESPEEIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSG-GTLVLVGL---GSE- 276
Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
            ++S  ++H+    +  + G  +  +  P+ +     K + +   VTH    E+   AF+
Sbjct: 277 -MTSVPLVHAATREV-DIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPLEKALEAFE 334
Query: 243 LLIKGKCLRCVI 254
              KG  L+ +I
Sbjct: 335 TSKKGLGLKVMI 346

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 82/192 (42%), Gaps = 7/192 (3%)
Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A R   V +G  V++ G G IG+     A+  GA +++  D+ + +    K  G    + 
Sbjct: 163 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQ 222
Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
                 + +++ +        +   EC G  + +Q      R G G  +++G+   GS+ 
Sbjct: 223 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGL---GSE- 277
Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
            +++  +LH+  I    + G  +  +  P+ +     K + +   VTH    E+   AF+
Sbjct: 278 -MTTVPLLHAA-IREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFE 335
Query: 243 LLIKGKCLRCVI 254
              KG  L+ ++
Sbjct: 336 TFKKGLGLKIML 347

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 19/225 (8%)
Query: 26  FSEYTVLDIAHVVKVDPTVP-PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG 84
           ++EY + D  +V  +   V     A +L  GV+   G   +  N   G  V I G+G +G
Sbjct: 126 YAEYVLADPNYVGILPKNVEFAEIAPILCAGVTVYKG--LKQTNARPGQWVAISGIGGLG 183
Query: 85  LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD 144
               + AR  G   +  +D+   K E+ ++ G +  VN++   +  V  I  D+  GGA 
Sbjct: 184 HVAVQYARAMG-LHVAAIDIDDAKLELARKLGASLTVNARQ--EDPVEAIQRDI--GGAH 238
Query: 145 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL 204
                    S   +A    R+  G TI L V  P        F+V+  G  + GS+ G  
Sbjct: 239 GVLVTAVSNSAFGQAIGMARR--GGTIAL-VGLPPGDFPTPIFDVVLKGLHIAGSIVG-- 293
Query: 205 KAKSDIPILLKRYMDKELE-LDKFVTHEMKFEEINSAFDLLIKGK 248
             ++D    L+  +D   E L K   H  K ++IN   D +  G+
Sbjct: 294 -TRAD----LQEALDFAGEGLVKATIHPGKLDDINQILDQMRAGQ 333

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGLGSI 83
           F+EY V+   ++ K   ++PP  A L        +G A  T  A    G +V+I G G +
Sbjct: 124 FAEYAVVPAQNIWKNPKSIPPEYATL-----QEPLGNAVDTVLAGPISGKSVLITGAGPL 178
Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           GL     A+  GA  +I  +    + E+ K+ G    +N     ++ V + + D+TDG G
Sbjct: 179 GLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPF---EEDVVKEVXDITDGNG 235
Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL----SLSSFEVLH----SGK 194
            D   E  G    +++         G+  +LG+  PG       +L  F+ L     +G+
Sbjct: 236 VDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGL-YPGKVTIDFNNLIIFKALTIYGITGR 293
Query: 195 ILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKCLRCV 253
            L  + +           + +     +L LD  +TH+ K F++   AF+L   GK  + V
Sbjct: 294 HLWETWY----------TVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELXRAGKTGKVV 343

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGLGSI 83
           F+EY V+   ++ K   ++PP  A L        +G A  T  A    G +V+I G G +
Sbjct: 125 FAEYAVVPAQNIWKNPKSIPPEYATL-----QEPLGNAVDTVLAGPISGKSVLITGAGPL 179
Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           GL     A+  GA  +I  +    + E+ K+ G    +N     ++ V + + D+TDG G
Sbjct: 180 GLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPF---EEDVVKEVXDITDGNG 236
Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL----SLSSFEVLH----SGK 194
            D   E  G    +++         G+  +LG+  PG       +L  F+ L     +G+
Sbjct: 237 VDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGL-YPGKVTIDFNNLIIFKALTIYGITGR 294
Query: 195 ILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKCLRCV 253
            L  + +           + +     +L LD  +TH+ K F++   AF+L   GK  + V
Sbjct: 295 HLWETWY----------TVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELXRAGKTGKVV 344

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 93/230 (40%), Gaps = 29/230 (12%)
Query: 26  FSEYTVLDIAHVVKVDPTVPPNR------ACLLSCGVSTGVGAAWRTANVEVGSTVVIFG 79
           + EY V D  +V      + P++      A +L  GV+  V    +  +   G  VVI G
Sbjct: 122 YGEYVVADPNYV-----GLLPDKVGFVEIAPILCAGVT--VYKGLKVTDTRPGQWVVISG 174
Query: 80  LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT 139
           +G +G    + AR  G  R+  VD+   K  + +R G    VN+++    +  Q  I   
Sbjct: 175 IGGLGHVAVQYARAMG-LRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEI--- 230
Query: 140 DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS 199
            GGA              +A    R+  G TI L    PG       F+V+  G  + GS
Sbjct: 231 -GGAHGVLVTAVSPKAFSQAIGMVRR--GGTIALNGLPPGD-FGTPIFDVVLKGITIRGS 286
Query: 200 LFGGLKAKSDIPILLKRYMDKELELD-KFVTHEMKFEEINSAFDLLIKGK 248
           + G    +SD    L+  +D     D K      K +++N  F  L +GK
Sbjct: 287 IVG---TRSD----LQESLDFAAHGDVKATVSTAKLDDVNDVFGRLREGK 329

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 85/232 (36%), Gaps = 36/232 (15%)
Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 85
           F+EY V+   +V  +   +P      +   ++ G+ A       E    V+I G G+IGL
Sbjct: 117 FAEYIVVKRKNVFALPTDMPIEDGAFIE-PITVGLHAFHLAQGCE-NKNVIIIGAGTIGL 174
Query: 86  AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY 145
              + A   GA  +  +D+ SEK  + K FG  +  NS       +  ++ ++       
Sbjct: 175 LAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELR------ 228
Query: 146 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 205
                    L+ E       G  +T+ L V+  G    L+    LH    L  + FG + 
Sbjct: 229 ------FNQLILET-----AGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKIL 277
Query: 206 AK------------SDIP-----ILLKRYMDKELELDKFVTHEMKFEEINSA 240
            K            S  P        +   +++L L+  + H   FE    A
Sbjct: 278 RKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQA 329

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Query: 49  ACLLSC-GVSTGVGAAWRTANVEVGSTVVIFG----LGSIGLAVAEGARLCGATRIIGVD 103
           A  L+C GV+T    A R A+++   T+V+ G    LG++ + +A+   + GAT IIGVD
Sbjct: 149 AAPLTCSGVTTY--RAVRKASLDPSKTLVVIGAGGGLGTMAIQIAKA--VSGAT-IIGVD 203
Query: 104 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 163
           V  E  E  KR G    +N+ +     VS+I       GAD   + +  +      Y   
Sbjct: 204 VREEALEAAKRAGADYVINASS--QDPVSEIRRITQGKGADAVID-LNNSEKTLSIYPYV 260
Query: 164 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE 223
               GK +++G+   G+ L   +  +  +    +GSL G    +SD   ++   + +  +
Sbjct: 261 LAKQGKYVMVGLF--GADLKYHAPLITLNEVQFIGSLVGN---QSDFLGIMS--LAEAGK 313
Query: 224 LDKFVTHEMKFEEINSAFDLL 244
           +   VT  MK EE N A D L
Sbjct: 314 VKPMVTKTMKLEEANEAIDNL 334

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 23/207 (11%)
Query: 49  ACLLSCGVST--GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 106
           A L   G++    V  A RT  +  G+ V I G+G +G    +  ++     +I +DV  
Sbjct: 164 APLADAGITAYRAVKKAART--LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE 221
Query: 107 EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQ-EAYACCR 164
           EK ++ +R G    V+++    K V    +++T G G +   + VG  + V    Y   R
Sbjct: 222 EKLKLAERLGADHVVDARRDPVKQV----MELTRGRGVNVAMDFVGSQATVDYTPYLLGR 277
Query: 165 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG-LKAKSDIPILLKRYMDKELE 223
              G+ I++G    G +L   +  V+ S     GSL G  ++    + + L+  +  E++
Sbjct: 278 --MGRLIIVGY---GGELRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGKVRVEVD 332
Query: 224 LDKFVTHEMKFEEINSAFDLLIKGKCL 250
           +        K +EIN   + L KG+ L
Sbjct: 333 IH-------KLDEINDVLERLEKGEVL 352

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 78/189 (41%), Gaps = 7/189 (3%)
Query: 63  AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 122
           A R   V +G  V++ G G IG      A+  GA +++  D+ + +    K  G    + 
Sbjct: 163 ACRRGGVTLGHKVLVCGAGPIGXVTLLVAKAXGAAQVVVTDLSATRLSKAKEIGADLVLQ 222
Query: 123 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
                 + +++ +        +   EC G  + +Q      R G G  +++G+   GS+ 
Sbjct: 223 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGL---GSEX 278
Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           +  +  +LH+  I    + G  +  +  P+ +     K + +   VTH    E+   AF+
Sbjct: 279 T--TVPLLHAA-IREVDIKGVFRYCNTWPVAISXLASKSVNVKPLVTHRFPLEKALEAFE 335
Query: 243 LLIKGKCLR 251
              KG  L+
Sbjct: 336 TFKKGLGLK 344

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 11/189 (5%)
Query: 56  VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 115
           +S GV A  R A V++G+TV++ G G IGL     A+  GA  ++       + E+ K  
Sbjct: 154 LSVGVHACRR-AGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNC 211
Query: 116 G--VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 173
           G  VT  V+     + S+ + I        +   +C G    +       R G G  +++
Sbjct: 212 GADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLV 270
Query: 174 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 233
           G+   GSQ+         + +I + S+F   +  +D PI L+        + + VTH  K
Sbjct: 271 GM---GSQMVTVPLVNACAREIDIKSVF---RYCNDYPIALEMVASGRCNVKQLVTHSFK 324
Query: 234 FEEINSAFD 242
            E+   AF+
Sbjct: 325 LEQTVDAFE 333

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 7/155 (4%)
Query: 7   SRFKDLRGETIHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWR 65
           +R  DL G T     S  S +EY ++D A H+V +    P   A L   G++     +  
Sbjct: 107 TRAADL-GITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRV 165
Query: 66  TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 125
              +  GST V+ G+G +G    +  R   A R+I VD+  ++  + +  G    V S  
Sbjct: 166 LPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSG- 224
Query: 126 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEA 159
                 +  I ++T G GA   F+ VG  S +  A
Sbjct: 225 ---AGAADAIRELTGGQGATAVFDFVGAQSTIDTA 256

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 88/229 (38%), Gaps = 11/229 (4%)
Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 85
            SEY VL     V    ++    A  L C   T   A     ++  G  VV+ G G + L
Sbjct: 144 LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVAL 203
Query: 86  AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY 145
              + A+  GA  I+      EK +     G    +N     +  V ++     D GAD+
Sbjct: 204 FGLQIAKATGAEVIV-TSSSREKLDRAFALGADHGIN--RLEEDWVERVYALTGDRGADH 260
Query: 146 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 205
             E  G A L Q   A      G+  V+GV + G ++S     +L    ++ G   G  +
Sbjct: 261 ILEIAGGAGLGQSLKAVAPD--GRISVIGVLE-GFEVSGPVGPLLLKSPVVQGISVGHRR 317
Query: 206 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 254
           A  D+   + R     L L   +    KF E+  A   L +G   + VI
Sbjct: 318 ALEDLVGAVDR-----LGLKPVIDXRYKFTEVPEALAHLDRGPFGKVVI 361

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 22/237 (9%)
Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGLGSI 83
           F+ Y ++   +  K    +PP  A L        +G A  T  A    G + +I G G +
Sbjct: 125 FAHYAIVPAKNAWKNPKDMPPEYAAL-----QEPLGNAVDTVLAGPIAGRSTLITGAGPL 179
Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           GL     A+  GA  +I  +    + ++ K+ G    VN     ++   + ++D+TDG G
Sbjct: 180 GLLGIAVAKASGAYPVIVSEPSEFRRKLAKKVGADYVVNPF---EEDPVKFVMDITDGAG 236
Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS---FEVLHSGKILMGS 199
            +   E  G    +++       G G+  +LG+      +  ++   F+ L    I    
Sbjct: 237 VEVFLEFSGAPKALEQGLKAVTPG-GRVSLLGLFPREVTIDFNNLIIFKALEVHGITGRH 295
Query: 200 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKCLRCVIW 255
           L+      S +          +L LD  +TH+ K F++   AF+L+  GK  + V +
Sbjct: 296 LWETWYTVSSL------IQSGKLNLDPIITHKYKGFDKFEEAFELMRAGKTGKVVFF 346

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-133
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-130
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-128
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-127
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-125
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-107
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	3e-92
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	4e-43
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	3e-40
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	1e-36
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-36
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	2e-34
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	2e-34
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	4e-34
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-33
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	1e-32
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	8e-30
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	9e-30
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	2e-29
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	5e-29
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	7e-28
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	4e-27
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	1e-26
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	3e-25
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	6e-19
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	1e-18
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	3e-18
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	2e-10
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	6e-10
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	7e-10
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	3e-09
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	3e-08
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	4e-08
4eye_A	342	Probable oxidoreductase; structural genomics, niai	7e-08
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	2e-07
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	4e-07
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	4e-07
3gms_A	340	Putative NADPH:quinone reductase; structural genom	3e-06
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	3e-06
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	3e-06
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	1e-05
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	2e-05
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	5e-05
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	5e-05
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	1e-04
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	2e-04
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	4e-04
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	4e-04

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  380 bits (977), Expect = e-133
 Identities = 113/256 (44%), Positives = 171/256 (66%), Gaps = 3/256 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G 
Sbjct: 240 INPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE 298

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN A
Sbjct: 299 EIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKA 357

Query: 241 FDLLIKGKCLRCVIWM 256
           F+L+  GK +R V+ +
Sbjct: 358 FELMHSGKSIRTVVKI 373

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  371 bits (956), Expect = e-130
 Identities = 104/254 (40%), Positives = 158/254 (62%), Gaps = 4/254 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           M  D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG 
Sbjct: 123 MQ-DGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGY 180

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE 
Sbjct: 181 GSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATEC 240

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV     
Sbjct: 241 VNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQ 299

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
            LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSMNPMLLL-SGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358

Query: 241 FDLLIKGKCLRCVI 254
           FDLL  G+ +R ++
Sbjct: 359 FDLLRSGESIRTIL 372

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  366 bits (943), Expect = e-128
 Identities = 106/256 (41%), Positives = 161/256 (62%), Gaps = 4/256 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+ P +  CLL CGVSTG 
Sbjct: 123 VMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGF 181

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE  K FG T+F
Sbjct: 182 GAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDF 241

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           VN  +   + +SQ++  MT+GG D+  ECVG   +++ A   C KGWG ++++G      
Sbjct: 242 VNPNDH-SEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT-DLH 299

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
            ++    +++ +G+   GS+FGG K K  +P ++K Y+DK+++LD+F+TH M  E +N A
Sbjct: 300 DVATRPIQLI-AGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDA 358

Query: 241 FDLLIKGKCLRCVIWM 256
            DL+  GKC+R V+ +
Sbjct: 359 IDLMKHGKCIRTVLSL 374

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  365 bits (940), Expect = e-127
 Identities = 101/254 (39%), Positives = 154/254 (60%), Gaps = 5/254 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG S+G 
Sbjct: 126 LMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGY 184

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  G T+ 
Sbjct: 185 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDC 244

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           +N +   DK V  +I ++T GG DY  +C G A  ++ A  C   GWG   V+G      
Sbjct: 245 LNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA--KVD 301

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH + FE IN A
Sbjct: 302 EMTIPTVDVI-LGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDA 360

Query: 241 FDLLIKGKCLRCVI 254
            DL+ +GK +R ++
Sbjct: 361 IDLMKEGKSIRTIL 374

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  358 bits (921), Expect = e-125
 Identities = 97/254 (38%), Positives = 148/254 (58%), Gaps = 5/254 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP  P   +CL+ CG +TG 
Sbjct: 123 LMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGY 180

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 120
           GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV    +KF      G TE 
Sbjct: 181 GAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATEC 240

Query: 121 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
           +N K+  DK + ++I + T+GG DY  EC G    +  A      G G T+VLG+  P  
Sbjct: 241 LNPKDY-DKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNE 299

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
           +L L    +L +G+ L GS+FGG K + ++  L+  YM K++ ++  V+ ++  ++IN A
Sbjct: 300 RLPLDPLLLL-TGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINKA 357

Query: 241 FDLLIKGKCLRCVI 254
           F+LL  G+ +R ++
Sbjct: 358 FELLSSGQGVRSIM 371

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  314 bits (807), Expect = e-107
 Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 7/258 (2%)

Query: 1   MPRDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 59
              +               HF + SSF+ Y +    + VKV   VP      L CG+ TG
Sbjct: 120 DS-EGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTG 178

Query: 60  VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 119
            GA      V   S+ V +G G++GL+    A++CGA+ II VD++  + E+ K+ G T 
Sbjct: 179 AGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH 238

Query: 120 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 179
            +NSK    +     I ++TDGG ++  E  G   ++++         GK  V+G  Q G
Sbjct: 239 VINSK---TQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLG 294

Query: 180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 239
           +       ++L  GK ++G + G    K  IP L++ Y   +   D+ V     F+EIN 
Sbjct: 295 TTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQ 353

Query: 240 AFDLLIKGKCLRCVIWMG 257
           A     KG  L+ +I + 
Sbjct: 354 AAIDSRKGITLKPIIKIA 371

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  276 bits (707), Expect = 3e-92
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 10/248 (4%)

Query: 13  RGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV 71
           RG + +  +    +S + VLD    V+KV      +   +  C  +T   A         
Sbjct: 137 RGCSEYPHL-RGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFA 195

Query: 72  GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSV 131
           G TVVI G G +GL     AR  GA  +I +     + ++ +  G    +N +    +  
Sbjct: 196 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEER 255

Query: 132 SQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL 190
            + I+D+T G GAD+  E  G +  + E     R+G G   V GV  P   +       +
Sbjct: 256 RKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFK----V 310

Query: 191 HSGKILMGSLFGGLKAKS--DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
           +   +L  + F G+           +         L K +TH +  +E N A +L+   +
Sbjct: 311 YEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESRE 370

Query: 249 CLRCVIWM 256
            L+ +++ 
Sbjct: 371 ALKVILYP 378

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  148 bits (376), Expect = 4e-43
 Identities = 52/244 (21%), Positives = 96/244 (39%), Gaps = 16/244 (6%)

Query: 14  GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVG 72
           G T     S  S +EY ++D A  +     + P  A  L+  G++     +     +  G
Sbjct: 113 GITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPG 172

Query: 73  STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVS 132
           ST V+ G+G +G    +  R   A R+I VD+  ++  + +  G    V S        +
Sbjct: 173 STAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKS----GAGAA 228

Query: 133 QIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH 191
             I ++T G GA   F+ VG  S +  A        G   V+G+       +   F ++ 
Sbjct: 229 DAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGI--HAGAHAKVGFFMIP 285

Query: 192 SGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL- 250
            G  ++   +G      ++  ++       L++    T     +E  +A+  L +G    
Sbjct: 286 FGASVVTPYWGTRS---ELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLREGSIRG 339

Query: 251 RCVI 254
           R V+
Sbjct: 340 RGVV 343

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  141 bits (357), Expect = 3e-40
 Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 13/233 (5%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLG 81
            F+EY ++      ++  T+ P        L+C +          + ++ GSTV I G G
Sbjct: 138 GFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL-----HGVDLSGIKAGSTVAILGGG 192

Query: 82  SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG 141
            IGL   + ARL GAT +I     + K  + +  G T  V+             + +  G
Sbjct: 193 VIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPG 252

Query: 142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF 201
           G D   EC G+A  V+++    + G G  ++LGV   G ++ +  F++L     ++GS F
Sbjct: 253 GVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFRELRVLGS-F 310

Query: 202 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 254
                               +E+D+ ++  +  +E             ++ ++
Sbjct: 311 I---NPFVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLV 360

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  131 bits (332), Expect = 1e-36
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 16/231 (6%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLG 81
            F+EY V+   +V  +   +P         ++ G+      A+  A       V+I G G
Sbjct: 116 GFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL-----HAFHLAQGCENKNVIIIGAG 170

Query: 82  SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG 141
           +IGL   + A   GA  +  +D+ SEK  + K FG  +  NS    + S  Q+   + + 
Sbjct: 171 TIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSS---EMSAPQMQSVLREL 227

Query: 142 -GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE-VLHSGKILMGS 199
                  E  G+   V+ A         +  ++G       L+ ++F  +L     ++GS
Sbjct: 228 RFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKILRKELTVIGS 286

Query: 200 L--FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
              +       +     +   +++L L+  + H   FE    A   + +  
Sbjct: 287 WMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNA 337

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  132 bits (333), Expect = 2e-36
 Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 22/243 (9%)

Query: 25  SFSEYTVLDIAHVVKV-------DPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGST 74
           +F+EY  +D  +   +       +         L    S   +       R   +  G  
Sbjct: 160 AFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYN---AVIVRGGGIRPGDN 216

Query: 75  VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQI 134
           VVI G G IGLA     +  GA+++I  +    +  + K  G    ++       +  + 
Sbjct: 217 VVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKE---NFVEA 273

Query: 135 IIDMTDG-GADYCFECVGLASLVQEA--YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH 191
           ++D T+G GA    E  G+  LV         R       V  V +  +++ L+      
Sbjct: 274 VLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQV 333

Query: 192 SGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLR 251
               ++GS   G       P ++   M   +++ K ++  +  EEI      L   K L 
Sbjct: 334 RRAQIVGSQ--GHSGHGTFPRVI-SLMASGMDMTKIISKTVSMEEIPEYIKRLQTDKSLV 390

Query: 252 CVI 254
            V 
Sbjct: 391 KVT 393

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  125 bits (317), Expect = 2e-34
 Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 11/210 (5%)

Query: 38  VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT 97
             +   +P   A ++   ++TG   A   AN+++G TV + G+G +GL    GA   GA 
Sbjct: 134 AHLPKEIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAG 192

Query: 98  RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLV 156
           RI  V       +I   +G T+ +N K   +  + + I+  TDG G D      G     
Sbjct: 193 RIFAVGSRKHCCDIALEYGATDIINYK---NGDIVEQILKATDGKGVDKVVIAGGDVHTF 249

Query: 157 QEAYACCRKGWGKTIVLGVDQPGSQLSL--SSFEVLHSGKILMGSLFGGLKAKSDIPILL 214
            +A    + G      +     G  + +  S + V    K + G L  G +    +  L+
Sbjct: 250 AQAVKMIKPG-SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRL--RMERLI 306

Query: 215 KRYMDKELELDKFVTHEMK-FEEINSAFDL 243
                K ++  K VTH  + F+ I  AF L
Sbjct: 307 DLVFYKRVDPSKLVTHVFRGFDNIEKAFML 336

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  125 bits (316), Expect = 2e-34
 Identities = 44/233 (18%), Positives = 84/233 (36%), Gaps = 16/233 (6%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLG 81
            F+EY V+   +       +P   A +       V           +   G +V+I G G
Sbjct: 120 GFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAV-----HTVYAGSGVSGKSVLITGAG 174

Query: 82  SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG 141
            IGL  A   R  GA  I+  D    +    + +     VN     ++ + +++  +T  
Sbjct: 175 PIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYA-DRLVNPL---EEDLLEVVRRVTGS 230

Query: 142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF 201
           G +   E  G  + + +       G G+  +LG+     +  L+  E++  G    G   
Sbjct: 231 GVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSDPIRFDLAG-ELVMRGITAFGIA- 287

Query: 202 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 254
            G +                ++L   +TH +       AF LL  G+ ++ ++
Sbjct: 288 -GRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVIL 339

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  125 bits (315), Expect = 4e-34
 Identities = 53/235 (22%), Positives = 95/235 (40%), Gaps = 18/235 (7%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLG 81
            F+EY V+   ++ K   ++PP  A L   L   V               G +V+I G G
Sbjct: 124 VFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVD----TVLAG--PISGKSVLITGAG 177

Query: 82  SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG 141
            +GL     A+  GA  +I  +    + E+ K+ G    +N        V + ++D+TDG
Sbjct: 178 PLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEE---DVVKEVMDITDG 234

Query: 142 -GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL 200
            G D   E  G    +++         G+  +LG+      +  ++  ++     + G  
Sbjct: 235 NGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPGKVTIDFNNL-IIFKALTIYGIT 292

Query: 201 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKCLRCVI 254
             G         + +     +L LD  +TH+ K F++   AF+L+  GK  + V 
Sbjct: 293 --GRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVF 345

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  123 bits (311), Expect = 1e-33
 Identities = 49/236 (20%), Positives = 99/236 (41%), Gaps = 20/236 (8%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNR---ACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGL 80
            F+E+       V+K+   +   +      L+    T   A  +    +  G+ V I G+
Sbjct: 136 GFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV 195

Query: 81  GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD 140
           G +G    +  ++     +I +DV  EK ++ +R G    V+++    +   + ++++T 
Sbjct: 196 GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR----RDPVKQVMELTR 251

Query: 141 G-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS 199
           G G +   + VG  + V        +  G+ I++G    G +L   +  V+ S     GS
Sbjct: 252 GRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGY---GGELRFPTIRVISSEVSFEGS 307

Query: 200 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI 254
           L G      ++  L+   +  ++ +        K +EIN   + L KG+ L R V+
Sbjct: 308 LVGNYV---ELHELVTLALQGKVRV---EVDIHKLDEINDVLERLEKGEVLGRAVL 357

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  121 bits (305), Expect = 1e-32
 Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 17/233 (7%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGS 82
              +   + A   K+   V      L   LS G+      A R   V +G  V++ G G 
Sbjct: 128 LCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGI-----HACRRGGVTLGHKVLVCGAGP 182

Query: 83  IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGG 142
           IG+     A+  GA +++  D+ + +    K  G    +       + +++ +       
Sbjct: 183 IGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 242

Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL-F 201
            +   EC G  + +Q      R G G  +++G+       ++           + G   +
Sbjct: 243 PEVTIECTGAEASIQAGIYATRSG-GTLVLVGL--GSEMTTVPLLHAAIREVDIKGVFRY 299

Query: 202 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 254
                    P+ +     K + +   VTH    E+   AF+   KG  L+ ++
Sbjct: 300 CN-----TWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIML 347

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  113 bits (286), Expect = 8e-30
 Identities = 43/230 (18%), Positives = 79/230 (34%), Gaps = 20/230 (8%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGS 82
              Y         K+   +      +   LS  +     A  + A V +G  V+I G G 
Sbjct: 137 LRRYVNHPAVWCHKI-GNMSYENGAMLEPLSVAL-----AGLQRAGVRLGDPVLICGAGP 190

Query: 83  IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD-KSVSQIIIDMTDG 141
           IGL     A+  GA  ++  D+   + +  K        +       +  ++ I++   G
Sbjct: 191 IGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGG 250

Query: 142 -GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL 200
                  EC G+ S +  A    + G GK  V+GV    +++ +           L    
Sbjct: 251 IEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGV--GKNEIQIPFMRASVREVDLQFQY 307

Query: 201 -FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC 249
            +         P  ++   +  ++L + VTH    E+   AF+     K 
Sbjct: 308 RYCN-----TWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKT 352

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  113 bits (284), Expect = 9e-30
 Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 20/236 (8%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA---AWRTANVEVGSTVVIFGLG 81
            FSEY ++  +  +    ++ P  A  L+   +T +GA   A    +      V++ G+G
Sbjct: 121 GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIG 180

Query: 82  SIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD 140
            +    +     L     I+G+    +  +     G       K+        +I  +TD
Sbjct: 181 GLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKD-----AESLINKLTD 235

Query: 141 G-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS 199
           G GA    + VG             +  G  I++G+   G ++SL +F+     K L+GS
Sbjct: 236 GLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGM--EGKRVSLEAFDTAVWNKKLLGS 292

Query: 200 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI 254
            +G L    D+  +++     +++       ++  ++IN AF  L +G+   R VI
Sbjct: 293 NYGSLN---DLEDVVRLSESGKIKP---YIIKVPLDDINKAFTNLDEGRVDGRQVI 342

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  112 bits (282), Expect = 2e-29
 Identities = 57/236 (24%), Positives = 102/236 (43%), Gaps = 21/236 (8%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF----GL 80
           +++EY ++     +     +    A  L+C   T   A  R A+++   T+++     GL
Sbjct: 125 AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGL 183

Query: 81  GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD 140
           G++ + +A    + GA  IIGVDV  E  E  KR G    +N+     +     I  +T+
Sbjct: 184 GTMAVQIA--KAVSGA-TIIGVDVREEAVEAAKRAGADYVINAS---MQDPLAEIRRITE 237

Query: 141 G-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS 199
             G D   +       +        K  GK +++G+   G+ L   +  +  S    +GS
Sbjct: 238 SKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGL--FGADLHYHAPLITLSEIQFVGS 294

Query: 200 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI 254
           L G    +SD   +++  + +  ++   +T  MK EE N A D L   K + R V+
Sbjct: 295 LVG---NQSDFLGIMR--LAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVL 345

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  111 bits (280), Expect = 5e-29
 Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 20/230 (8%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLG 81
           + + Y V       K+   V      L   LS GV      A R A V++G+TV++ G G
Sbjct: 124 NLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV-----HACRRAGVQLGTTVLVIGAG 178

Query: 82  SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VTEFVNSKNCGDKSVSQIIIDMT 139
            IGL     A+  GA  ++       + E+ K  G  VT  V+     + S+ + I    
Sbjct: 179 PIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI 237

Query: 140 DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS 199
               +   +C G    +       R G G  +++G+      +++           +   
Sbjct: 238 GDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGM--GSQMVTVPLVNACAREIDIKSV 294

Query: 200 L-FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
             +       D PI L+        + + VTH  K E+   AF+   K  
Sbjct: 295 FRYCN-----DYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKA 339

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  108 bits (273), Expect = 7e-28
 Identities = 38/240 (15%), Positives = 71/240 (29%), Gaps = 30/240 (12%)

Query: 40  VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRI 99
                      L+S  + TG      +A V+ GS V I G G +G   A GARL GA  +
Sbjct: 155 EQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACV 213

Query: 100 IGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL------ 152
           I  D   E+ ++    G              +   I  +      D   + VG       
Sbjct: 214 IVGDQNPERLKLLSDAGFETIDLRN---SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLG 270

Query: 153 --------ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG-G 203
                      +   +   R G G   + G+        ++         +  G ++   
Sbjct: 271 DEANTETPNGALNSLFDVVRAG-GAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKS 329

Query: 204 LK-------AKSDIPILLKRYMDKELEL--DKFVTHEMKFEEINSAFDLLIKGKCLRCVI 254
           ++         +    L +  +  ++           +  ++    +    KG   + VI
Sbjct: 330 IRIMTGMAPVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSPAKFVI 389

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  106 bits (268), Expect = 4e-27
 Identities = 44/222 (19%), Positives = 73/222 (32%), Gaps = 30/222 (13%)

Query: 58  TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 117
           TG   A  TA V  GSTV + G G +GLA A  ARL GA  +I  D+   +    K  G 
Sbjct: 173 TGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF 231

Query: 118 TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL---------------ASLVQEAYA 161
                S    D  + + I  +      D   + VG                A+++     
Sbjct: 232 EIADLSL---DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQ 288

Query: 162 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG-GLK-------AKSDIPIL 213
             R   GK  + G+       ++ +   + S  I  G  +                   L
Sbjct: 289 VTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRAL 347

Query: 214 LKRYMDKELELDK-FVTHEMKFEEINSAFDLLIKGKCLRCVI 254
           ++  M   + + +      +  ++    +     G   + VI
Sbjct: 348 MQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVPKKFVI 389

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  105 bits (263), Expect = 1e-26
 Identities = 35/245 (14%), Positives = 71/245 (28%), Gaps = 23/245 (9%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACL--LSCGV---------STGVGAAWRTANVEVGST 74
             E+   D  ++VK+  ++         L+               V              
Sbjct: 124 MREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRK 183

Query: 75  VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQ 133
           V++ G G IG+      R  G    +       + E          + NS N  DK    
Sbjct: 184 VLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDK---- 239

Query: 134 IIIDMTDGGADYCFECVGL-ASLVQEAYACCRKGWGKTIVLGVDQPGSQ--LSLSSFEVL 190
             +  + G  D   +  G   +++        +  G   + G    GS      +  E++
Sbjct: 240 --LKDSVGKFDVIIDATGADVNILGNVIPLLGRN-GVLGLFGFSTSGSVPLDYKTLQEIV 296

Query: 191 HSGKILMGSLFGGLKA-KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC 249
           H+ K ++G + G     +  +  L              +T  +   +      +L + + 
Sbjct: 297 HTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEH 356

Query: 250 LRCVI 254
               I
Sbjct: 357 GEIKI 361

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  101 bits (253), Expect = 3e-25
 Identities = 37/228 (16%), Positives = 78/228 (34%), Gaps = 20/228 (8%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACL--LSCGV-STGVGAAWRTANVEVGSTVVIFGLGS 82
            SE+      ++V++  +       +  +S    +     A R+A     S+  + G GS
Sbjct: 124 MSEFFTSPEKYLVRIPRSQAELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGS 183

Query: 83  IGLAVAEGARL--CGATRIIGV---DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID 137
           +GL      ++   G   +  +   D      +I +    T   + +        + + D
Sbjct: 184 LGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQT-----PVEDVPD 238

Query: 138 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS---QLSLSSFEVLHSGK 194
           +     D+ +E  G      ++        G   +LGV    +          E++   K
Sbjct: 239 VY-EQMDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPSDWAFEVDAGAFHREMVLHNK 296

Query: 195 ILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
            L+GS+   ++      +   +    +  L+  VT      E  +AFD
Sbjct: 297 ALVGSVNSHVEHFEAATVTFTK--LPKWFLEDLVTGVHPLSEFEAAFD 342

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 83.8 bits (208), Expect = 6e-19
 Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 44/247 (17%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIF----G 79
           SF +Y   D      +       +   + C G++     A ++AN+  G  V I     G
Sbjct: 124 SFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVY--KALKSANLMAGHWVAISGAAGG 181

Query: 80  LGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID 137
           LGS+    A A G R      ++G+D    K E+ +  G   F++     D  +   ++ 
Sbjct: 182 LGSLAVQYAKAMGYR------VLGIDGGEGKEELFRSIGGEVFIDFTKEKD--IVGAVLK 233

Query: 138 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM 197
            TDGGA          + ++ +    R   G T+++G+   G++     F  +     ++
Sbjct: 234 ATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMP-AGAKCCSDVFNQVVKSISIV 291

Query: 198 GSLFGGLKAKSDIPILLKRYMDKELE--LDKFVTH------EM-KFEEINSAFDLLIKGK 248
           GS  G                  +    LD F         ++     +   ++ + KG+
Sbjct: 292 GSYVGNR---------------ADTREALDFFARGLVKSPIKVVGLSTLPEIYEKMEKGQ 336

Query: 249 CL-RCVI 254
            + R V+
Sbjct: 337 IVGRYVV 343

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 82.6 bits (205), Expect = 1e-18
 Identities = 54/244 (22%), Positives = 85/244 (34%), Gaps = 42/244 (17%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSI 83
            + EY V D  +V  +   V       + C GV+       +  +   G  VVI G+G +
Sbjct: 121 GYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTV--YKGLKVTDTRPGQWVVISGIGGL 178

Query: 84  G-----LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM 138
           G      A A G       R+  VD+   K  + +R G    VN++   D   +  +   
Sbjct: 179 GHVAVQYARAMGL------RVAAVDIDDAKLNLARRLGAEVAVNAR---DTDPAAWLQKE 229

Query: 139 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG 198
             GGA              +A    R+G G   + G+  P        F+V+  G  + G
Sbjct: 230 I-GGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGL--PPGDFGTPIFDVVLKGITIRG 285

Query: 199 SLFGGLKAKSDIPILLKRYMDKELELDKFVTH-------EMKFEEINSAFDLLIKGKCL- 250
           S+ G                D +  LD              K +++N  F  L +GK   
Sbjct: 286 SIVGTRS-------------DLQESLDFAAHGDVKATVSTAKLDDVNDVFGRLREGKVEG 332

Query: 251 RCVI 254
           R V+
Sbjct: 333 RVVL 336

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 81.5 bits (202), Expect = 3e-18
 Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 46/250 (18%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSI 83
            ++EY      +VVK+   +    A  + C GV+T    A +    + G  V I+G+G +
Sbjct: 119 GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY--KALKVTGAKPGEWVAIYGIGGL 176

Query: 84  G-----LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM 138
           G      A A G        ++ VD+  EK E+ K  G    VN      +  ++ + + 
Sbjct: 177 GHVAVQYAKAMGLN------VVAVDIGDEKLELAKELGADLVVNPL---KEDAAKFMKEK 227

Query: 139 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG 198
             GG              Q AY   R+G G  +++G+  P  ++ +  F+ + +G  ++G
Sbjct: 228 V-GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGL--PPEEMPIPIFDTVLNGIKIIG 283

Query: 199 SLFGGLKAKSDIPILLKRYMDKELE--LDKFVTH-------EMKFEEINSAFDLLIKGKC 249
           S+ G                 K+L+  L                 E+IN  FD ++KG+ 
Sbjct: 284 SIVGTR---------------KDLQEALQFAAEGKVKTIIEVQPLEKINEVFDRMLKGQI 328

Query: 250 L-RCVIWMGE 258
             R V+ + +
Sbjct: 329 NGRVVLTLED 338

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 51/229 (22%), Positives = 82/229 (35%), Gaps = 31/229 (13%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR----TANVEVGSTVVIFGLG 81
            SEY VL     V    ++    A  L C   T    AW       ++  G  VV+ G G
Sbjct: 144 LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLT----AWFALVEKGHLRAGDRVVVQGTG 199

Query: 82  SIGLAVAEGARLCGATRII--GVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT 139
            + L   + A+  GA  I+        EK +     G    +N     ++   + +  +T
Sbjct: 200 GVALFGLQIAKATGAEVIVTSSSR---EKLDRAFALGADHGINRL---EEDWVERVYALT 253

Query: 140 DG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG 198
              GAD+  E  G A L Q +        G+  V+GV   G ++S     +L    ++ G
Sbjct: 254 GDRGADHILEIAGGAGLGQ-SLKAVAPD-GRISVIGV-LEGFEVSGPVGPLLLKSPVVQG 310

Query: 199 SLFGGLKAKSDIPILLKRYMDKELELDKF---VTHEMKFEEINSAFDLL 244
              G  +A  D        +   ++       +    KF E+  A   L
Sbjct: 311 ISVGHRRALED--------LVGAVDRLGLKPVIDMRYKFTEVPEALAHL 351

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 37/236 (15%), Positives = 69/236 (29%), Gaps = 20/236 (8%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSI 83
           ++    V     +++V   +P   A  L     T          ++ G +V+       +
Sbjct: 121 TWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGV 180

Query: 84  GLAVAEGARLCGATRIIGV---DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD 140
           G AV + A   G   I  V     I +  +  K  G    +      +    ++     D
Sbjct: 181 GQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITE---EELRRPEMKNFFKD 237

Query: 141 G-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS 199
                    CVG      E      +G G  +  G       +  S   ++     L G 
Sbjct: 238 MPQPRLALNCVG-GKSSTELLRQLARG-GTMVTYGG-MAKQPVVASVSLLIFKDLKLRG- 293

Query: 200 LFGGLKAKSDIPILLKRYMDKEL-------ELDKFVTHEMKFEEINSAFDLLIKGK 248
            +     K   P   K  +   L       +L      ++  ++  SA +  +K  
Sbjct: 294 FWLSQWKKDHSPDQFKELIL-TLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPF 348

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 57.9 bits (140), Expect = 7e-10
 Identities = 43/248 (17%), Positives = 80/248 (32%), Gaps = 39/248 (15%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR------TANVEVGSTVVIF 78
             +E  ++    ++     +    A       ST    A+R       A ++ G  V+I+
Sbjct: 180 GLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNST----AYRQLVSRNGAGMKQGDNVLIW 235

Query: 79  GLGS-IGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRFGVTEFVNSKNCGDKSVSQI- 134
           G    +G    + A   GA  I    V+S  +K EI +  G    ++    G +      
Sbjct: 236 GASGGLGSYATQFALAGGANPIC---VVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDEN 292

Query: 135 -------------IIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 180
                        I ++T G   D  FE  G  +    +    RKG G          G 
Sbjct: 293 TQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGA-SVFVTRKG-GTITTCAS-TSGY 349

Query: 181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 240
                +  +  S K ++GS F   +   +      R +  +  +   ++     E+   A
Sbjct: 350 MHEYDNRYLWMSLKRIIGSHFANYREAWE----ANRLIA-KGRIHPTLSKVYSLEDTGQA 404

Query: 241 FDLLIKGK 248
              + +  
Sbjct: 405 AYDVHRNL 412

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 43/251 (17%), Positives = 86/251 (34%), Gaps = 33/251 (13%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST--------GVGAAW----RTANVEVG 72
           +FS+YTV       K+   +   +A  L  G+ST        G+        +       
Sbjct: 106 AFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKP 165

Query: 73  STVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGVTEFVNSKNCGDKS 130
             V+++G   +      +  RL G   I      S   F++ K  G  E  + +     +
Sbjct: 166 VYVLVYGGSTATATVTMQMLRLSGYIPIA---TCSPHNFDLAKSRGAEEVFDYR---APN 219

Query: 131 VSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL--GVDQPGSQLSLSSFE 188
           ++Q I   T     Y  +C+         +A   +  G  + L    +   ++  +++  
Sbjct: 220 LAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDW 279

Query: 189 VLHSGKILMGSLFGGLKAKSDIPILLK------RYMDKELELDKFVTHEMK-----FEEI 237
            L       GS +     +       +      R   + +E  + V H ++     F+ I
Sbjct: 280 TLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHI 339

Query: 238 NSAFDLLIKGK 248
               +L+ KG+
Sbjct: 340 KQGMELVRKGE 350

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 34/246 (13%), Positives = 80/246 (32%), Gaps = 35/246 (14%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR------TANVEVGSTVVIF 78
             +EY V+  + ++     +    A +      T    A+R       A ++ G  V+I+
Sbjct: 172 GLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGT----AYRMLVSDRGAQMKQGDIVLIW 227

Query: 79  GLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD--------- 128
           G    +G    +  +  G    + V   ++K    +  G    +N    G          
Sbjct: 228 GASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPR 286

Query: 129 ------KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 182
                 + +++++++      D  FE  G  +    +    R+G G  +  G    G   
Sbjct: 287 RVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGL-SVIVARRG-GTVVTCGS-SSGYLH 343

Query: 183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 242
           +  +  +    K ++GS     + +        R  +    +   ++      E   A  
Sbjct: 344 TFDNRYLWMKLKKIVGSHGANHEEQQA----TNRLFESG-AVVPAMSAVYPLAEAAEACR 398

Query: 243 LLIKGK 248
           ++   +
Sbjct: 399 VVQTSR 404

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 23/170 (13%), Positives = 45/170 (26%), Gaps = 23/170 (13%)

Query: 25  SFSEYTVLDIAHVVKVD-----------PTVPPNRACLLSCGVSTGVGAAWRTANVEVGS 73
           ++  + + +    +K+              +  N+   +S    T          +  G 
Sbjct: 109 TWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGK 168

Query: 74  TVVIF--GLGSIGLAVAEGARLCGATRIIGV----DVISEKFEIGKRFGVTEFVNSKNCG 127
              I   G  ++G   ++  +L      I V      + E     K  G T+ +      
Sbjct: 169 DWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNN 227

Query: 128 DKSVSQIIIDMTD---GGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 174
            +     I +      G A     CVG                G  +  G
Sbjct: 228 SREFGPTIKEWIKQSGGEAKLALNCVG-GKSSTGIARKLNNN-GLMLTYG 275

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 51.4 bits (124), Expect = 7e-08
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 9/152 (5%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-LGSI 83
            ++E   +  ++++   P +    A  L     T   A  R   +  G TV++ G  G I
Sbjct: 113 GYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGI 172

Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           G A  + A+  GA ++I V   +   E  K  G    +      ++  ++ + + T G G
Sbjct: 173 GTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPL----EEGWAKAVREATGGAG 227

Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLG 174
            D   + +G      +A        G+ +V+G
Sbjct: 228 VDMVVDPIG-GPAFDDAVRTLASE-GRLLVVG 257

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 36/236 (15%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR----TANVEVGSTVVIFGLG 81
           ++EY VL  A++      +    A  +     T    AW+       V  G  V++   G
Sbjct: 121 YAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLT----AWQMVVDKLGVRPGDDVLVMAAG 176

Query: 82  S-IGLAVAEGARLCGATRIIGVDVI-----SEKFEIGKRFGVTEFVNSKNCGDKSVSQII 135
           S + +A  + A+L GA       VI      +K    K  G  E VN          + +
Sbjct: 177 SGVSVAAIQIAKLFGAR------VIATAGSEDKLRRAKALGADETVNYT---HPDWPKEV 227

Query: 136 IDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK 194
             +T G GAD   +  G A   +        G G+  + G    G + +L    V +   
Sbjct: 228 RRLTGGKGADKVVDHTG-ALYFEGVIKATANG-GRIAIAGA-SSGYEGTLPFAHVFYRQL 284

Query: 195 ILMGSLFGGLKAKSDIPILLKRYMDKELE--LDKFVTHEMKFEEINSAFDLLIKGK 248
            ++GS      +KS +  +L+   + +L+  + +     +  E       LL + +
Sbjct: 285 SILGSTMA---SKSRLFPILRFVEEGKLKPVVGQ----VLPLEAAAEGHRLLEERR 333

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 24/234 (10%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGL 80
            +S+Y  +     + +     P   A      ++     A     T  +E  S +V    
Sbjct: 126 MYSQYRCIPADQCLVLPEGATPADGASSFVNPLT-----ALGMVETMRLEGHSALVHTAA 180

Query: 81  GS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT 139
            S +G  + +     G  +++ +    E+ ++ K  G     N+      +  Q + +  
Sbjct: 181 ASNLGQMLNQICLKDGI-KLVNIVRKQEQADLLKAQGAVHVCNA---ASPTFMQDLTEAL 236

Query: 140 DG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL-SLSSFEVLHSGKILM 197
              GA   F+  G   L  +   C      K+         +    +  +  L +     
Sbjct: 237 VSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEF 296

Query: 198 GSLFGGLKAKSD---IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 248
              FG           P L K   ++   L + V       E+ + F      +
Sbjct: 297 NRNFGMAWGMGGWLLFPFLQKIGRERANALKQRV-----VAELKTTFASHYSKE 345

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 61/247 (24%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAW---RTANVEVGSTVVIFGLG 81
           ++ Y  +    VV +   +P + A  L C G++      +          G  V I GLG
Sbjct: 135 YANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTV-----YSPLVRNGCGPGKKVGIVGLG 189

Query: 82  SIG-----LAVAEGARLCGATRIIGVDVIS---EKFEIGKRFGVTEFVNSKNCGD--KSV 131
            IG     ++ A GA            VIS    K E   + G   ++ +   GD  +  
Sbjct: 190 GIGSMGTLISKAMGAE---------TYVISRSSRKREDAMKMGADHYIATLEEGDWGEKY 240

Query: 132 SQ---IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE 188
                +I+       D  F                 K  G+ + + +  P     LS   
Sbjct: 241 FDTFDLIVVCASSLTDIDFN----------IMPKAMKVGGRIVSISI--PEQHEMLSLKP 288

Query: 189 VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELEL--DKFVTHE-----MKFEEINSAF 241
                  +  S  G +K   ++       +   L+L  +K +        +    ++ AF
Sbjct: 289 YGLKAVSISYSALGSIK---EL-----NQL---LKLVSEKDIKIWVETLPVGEAGVHEAF 337

Query: 242 DLLIKGK 248
           + + KG 
Sbjct: 338 ERMEKGD 344

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 9/151 (5%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-LGSI 83
           ++ EY       VV +  ++    A  +     T       T N++    +++     +I
Sbjct: 98  TWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAI 157

Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           G   A+ +++    R+I V   ++  E   R G    +++       + + ++++T+G G
Sbjct: 158 GHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVIDTS---TAPLYETVMELTNGIG 213

Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVL 173
           AD   + +G      E     R       + 
Sbjct: 214 ADAAIDSIG-GPDGNELAFSLR--PNGHFLT 241

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 55/253 (21%), Positives = 91/253 (35%), Gaps = 76/253 (30%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST-------GVGAAWRTANVEVGSTVVI 77
           +S + V +  ++++    +P +    L C G++        G+           G  + I
Sbjct: 142 YSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEP--------GKHIGI 193

Query: 78  FGLGSIG-----LAVAEGARLCGATRIIGVDVISE----KFEIGKRFGVTEFVNSKNCGD 128
            GLG +G      A A G++         V VIS     K E  K FG   F+ S++   
Sbjct: 194 VGLGGLGHVAVKFAKAFGSK---------VTVISTSPSKKEEALKNFGADSFLVSRDQEQ 244

Query: 129 -KSVSQ---IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 184
            ++ +     IID                           K  GK I++G   P   L L
Sbjct: 245 MQAAAGTLDGIIDTVSAVHPL------------LPLFGLLKSHGKLILVGA--PEKPLEL 290

Query: 185 SSFEVLHSGKILMGSLFGGLK---------AKSDIPILLKRYMDKELELDKFVTHEMKFE 235
            +F ++   KI+ GS  GG+K         AK +I        D E+         +  +
Sbjct: 291 PAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNI------TADIEV---------ISTD 335

Query: 236 EINSAFDLLIKGK 248
            +N+A + L K  
Sbjct: 336 YLNTAMERLAKND 348

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 51/253 (20%), Positives = 86/253 (33%), Gaps = 76/253 (30%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST-------GVGAAWRTANVEVGSTVVI 77
           F++ TV+    VVK+   +   +A  L C GV+        G+           G    I
Sbjct: 135 FAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQP--------GLRGGI 186

Query: 78  FGLGSIG-----LAVAEGARLCGATRIIGVDVISE----KFEIGKRFGVTEFVNSKNCGD 128
            GLG +G     +A A G           V VIS     + E  +  G  ++V   +   
Sbjct: 187 LGLGGVGHMGVKIAKAMGHH---------VTVISSSNKKREEALQDLGADDYVIGSDQAK 237

Query: 129 -KSVSQ---IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 184
              ++     +ID                    E Y    K  GK I++GV    + L  
Sbjct: 238 MSELADSLDYVIDTVPVHHAL------------EPYLSLLKLDGKLILMGV--INNPLQF 283

Query: 185 SSFEVLHSGKILMGSLFGGLK---------AKSDIPILLKRYMDKELELDKFVTHEMKFE 235
            +  ++   K++ GS  G +K          +  +          E+         +K +
Sbjct: 284 LTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGL------SSIIEV---------VKMD 328

Query: 236 EINSAFDLLIKGK 248
            +N+AF+ L K  
Sbjct: 329 YVNTAFERLEKND 341

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 15/137 (10%)

Query: 20  FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW----RTANVEVGSTV 75
           +++  SF+EYTV+  +    V P+V P    LL  G +     A+        +  G  V
Sbjct: 114 YMAPGSFAEYTVVPASIATPV-PSVKPEYLTLLVSGTT-----AYISLKELGGLSEGKKV 167

Query: 76  VIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQI 134
           ++    G  G    + ++      +IG     EK    K  G    +N K    + V  +
Sbjct: 168 LVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYK---TEPVGTV 223

Query: 135 IIDMTDGGADYCFECVG 151
           +      G D  +E VG
Sbjct: 224 LKQEYPEGVDVVYESVG 240

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 64/245 (26%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAW---RTANVEVGSTVVIFGLG 81
           +S   V+D  +V+ VD   P  +   L C G++T     +   + + V  G+ V + G G
Sbjct: 132 YSNNIVVDENYVISVDKNAPLEKVAPLLCAGITT-----YSPLKFSKVTKGTKVGVAGFG 186

Query: 82  SIG-----LAVAEGARLCGATRIIGVDVIS---EKFEIGKRFGVTEFVNSKNCGDKSVSQ 133
            +G      AVA GA          V V +    K +     GV  F        + +  
Sbjct: 187 GLGSMAVKYAVAMGAE---------VSVFARNEHKKQDALSMGVKHFYTDPKQCKEELD- 236

Query: 134 IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG 193
            II       D             + Y       G   ++G+        LS F+ +H G
Sbjct: 237 FIISTIPTHYDL------------KDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLG 284

Query: 194 -KILMGSLFGGLK---------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 243
            + + GSL GG+K          K +I      Y + +L         +  ++I++A+  
Sbjct: 285 NRKVYGSLIGGIKETQEMVDFSIKHNI------YPEIDL---------ILGKDIDTAYHN 329

Query: 244 LIKGK 248
           L  GK
Sbjct: 330 LTHGK 334

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 20/138 (14%), Positives = 52/138 (37%), Gaps = 16/138 (11%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRA--CLLSCGVSTGVGA---AWRTANVEVGSTVVIFG 79
           ++S    +       +   +   +A    L      G+       +T  ++     +   
Sbjct: 94  AYSSVHNIIADKAAILPAAISFEQAAASFLK-----GLTVYYLLRKTYEIKPDEQFLFHA 148

Query: 80  L-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM 138
             G +GL   + A+  GA  +IG    ++K +   + G  + +N +   ++ + + + ++
Sbjct: 149 AAGGVGLIACQWAKALGAK-LIGTVGTAQKAQSALKAGAWQVINYR---EEDLVERLKEI 204

Query: 139 TDG-GADYCFECVGLASL 155
           T G      ++ VG  + 
Sbjct: 205 TGGKKVRVVYDSVGRDTW 222

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 9/151 (5%)

Query: 26  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-IG 84
           ++E     +  V K+   +  + A        T     +  AN+  G +V++   G  +G
Sbjct: 97  WAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVG 156

Query: 85  LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD 144
            AVA+         + G    + K E  K   VT   +     +    Q +  ++  G D
Sbjct: 157 QAVAQLCSTVPNVTVFGT-ASTFKHEAIKD-SVTHLFDR----NADYVQEVKRISAEGVD 210

Query: 145 YCFECVGLASLVQEAYACCRKGWGKTIVLGV 175
              +C+       +  +  +   G  I+ G 
Sbjct: 211 IVLDCLC-GDNTGKGLSLLKPL-GTYILYGS 239

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 30/145 (20%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW------------RTANVEVG 72
           ++SE  VL  A++VK+      +        VS    AA             +T  V+ G
Sbjct: 94  AYSEVHVLPEANLVKL-----AD-------SVSFEQAAALMLKGLTVQYLLRQTYQVKPG 141

Query: 73  STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSV 131
             ++     G +G    + A+  GA  +IG     EK    K  G  E ++      + V
Sbjct: 142 EIILFHAAAGGVGSLACQWAKALGAK-LIGTVSSPEKAAHAKALGAWETIDYS---HEDV 197

Query: 132 SQIIIDMTDG-GADYCFECVGLASL 155
           ++ ++++TDG      ++ VG  + 
Sbjct: 198 AKRVLELTDGKKCPVVYDGVGQDTW 222

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 72  GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 103
           G  ++I+G G IG ++A  A   G   +IGV+
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGM-HVIGVN 167

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 41/255 (16%), Positives = 72/255 (28%), Gaps = 100/255 (39%)

Query: 2   PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 61
           P   T  + + R      +     F++Y V  +   +K+       R  LL         
Sbjct: 105 PSMMTRMYIEQRDRL---YNDNQVFAKYNVSRLQPYLKL-------RQALL--------- 145

Query: 62  AAWRTANVEVGSTVVIFGLGSIG---LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 118
                  +     V+I G+   G   +A  +                S K +    F + 
Sbjct: 146 ------ELRPAKNVLIDGVLGSGKTWVA-LDVCL-------------SYKVQCKMDFKI- 184

Query: 119 EF-VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 177
            F +N KNC        +++M             L  L         +         +D 
Sbjct: 185 -FWLNLKNCNSPET---VLEM-------------LQKL-------LYQ---------IDP 211

Query: 178 PGSQLSLSSFEV---LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 234
             +  S  S  +   +HS +  +  L              K Y +  L L   V +    
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLL-----------KSKPYENCLLVLLN-VQN---- 255

Query: 235 EEINSAFDLLIKGKC 249
            +  +AF+L     C
Sbjct: 256 AKAWNAFNL----SC 266

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 48/250 (19%), Positives = 91/250 (36%), Gaps = 70/250 (28%)

Query: 26  FSEYTVLDIAHVVKV-DPTVPPNRACLLSC-GVSTGVGAAW---RTANVEVGSTVVIFGL 80
           +S+  V+   +V+++  P         L C G++T     +   R      G  V + G+
Sbjct: 149 YSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITT-----YSPLRHWQAGPGKKVGVVGI 203

Query: 81  GSIG-----LAVAEGARLCGATRIIGVDVIS---EKFEIGKRFGVTEFVNSKNCGD-KSV 131
           G +G     LA A GA          V   +    K E  K  G  E VNS+N  +  + 
Sbjct: 204 GGLGHMGIKLAHAMGAH---------VVAFTTSEAKREAAKALGADEVVNSRNADEMAAH 254

Query: 132 SQ---IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL-SLSSF 187
            +    I++      +             + +    K  G   ++G   P +   S   F
Sbjct: 255 LKSFDFILNTVAAPHNL------------DDFTTLLKRDGTMTLVGA--PATPHKSPEVF 300

Query: 188 EVLHSGKILMGSLFGGLK---------AKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 238
            ++   + + GS+ GG+          A+  I        D E+         ++ ++IN
Sbjct: 301 NLIMKRRAIAGSMIGGIPETQEMLDFCAEHGI------VADIEM---------IRADQIN 345

Query: 239 SAFDLLIKGK 248
            A++ +++G 
Sbjct: 346 EAYERMLRGD 355

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 8/135 (5%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS--TGVGAAWRTANVEVGSTVVIFGL-G 81
           ++S+  +     ++KV   +  +   L    +   T      +T  V+ G  V+I    G
Sbjct: 97  AYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAG 156

Query: 82  SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG 141
            +G  +   AR  GAT +IG     EK E  ++ G    +N      +  ++++ ++T G
Sbjct: 157 GMGHIMVPWARHLGAT-VIGTVSTEEKAETARKLGCHHTINYS---TQDFAEVVREITGG 212

Query: 142 -GADYCFECVGLASL 155
            G D  ++ +G  +L
Sbjct: 213 KGVDVVYDSIGKDTL 227

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 8/153 (5%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-I 83
            ++EY +     V K+   +   +   +     T   A   +A V+ G +V++ G    +
Sbjct: 124 GYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGV 183

Query: 84  GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 142
           GLA  + AR  G  +I+G     E  +I  + G  E  N +   + +    I       G
Sbjct: 184 GLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHR---EVNYIDKIKKYVGEKG 239

Query: 143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 175
            D   E +     + +  +    G G+ IV+G 
Sbjct: 240 IDIIIEMLA-NVNLSKDLSLLSHG-GRVIVVGS 270

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.97
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.94
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.09
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.05
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.98
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.95
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.89
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.81
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.77
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.66
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.51
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.5
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.5
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.5
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.43
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.39
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.26
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.25
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.21
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.19
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.17
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.14
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.12
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.04
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.0
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.98
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.98
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.97
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.96
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.95
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.95
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.94
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.92
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.89
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.87
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.87
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.86
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.85
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.84
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.79
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.78
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.75
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.75
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.74
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.72
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.72
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.72
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.72
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.71
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.71
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.71
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.71
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.7
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.69
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.69
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.69
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.69
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.69
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.69
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.69
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.68
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.67
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.67
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.67
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.67
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.66
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.66
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.66
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.66
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.66
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.65
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.64
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.64
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.64
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.63
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.62
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.62
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.61
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.61
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.61
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.61
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.61
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.61
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.6
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.59
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.59
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.58
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.57
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.57
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.57
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.57
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.57
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.56
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.56
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.56
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.56
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.56
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.55
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.55
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.54
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.54
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.53
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.52
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.52
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.52
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.52
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.52
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.51
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.51
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.5
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.5
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.5
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.49
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.49
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.48
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.48
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.48
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.48
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.48
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.47
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.47
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.46
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.46
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.46
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.46
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.46
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.46
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.46
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.46
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.45
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.45
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.45
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.45
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.44
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.44
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.44
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.43
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.43
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.43
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.42
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.42
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.42
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.42
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.42
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.41
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.41
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.41
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.41
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.41
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.4
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.4
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.4
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.4
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.4
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.4
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.4
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.39
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.39
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.39
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.39
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.38
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.38
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.37
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.37
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.37
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.37
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.37
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.37
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.37
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.37
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.37
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.37
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.37
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.36
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.36
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.36
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.36
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.36
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.36
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.35
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.35
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.35
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.34
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.34
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.34
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.34
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.34
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.34
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.33
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.33
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.33
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.33
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.33
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.32
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.32
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.32
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.32
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.32
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.32
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.32
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.32
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.31
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.31
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.31
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.31
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.3
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.3
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.3
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.3
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.29
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.29
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.29
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.29
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.28
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.28
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.28
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.28
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.27
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.27
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.27
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.27
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.26
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.26
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	97.26
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.26
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.26
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.26
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.26
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.25
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.25
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.25
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.25
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.24
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.23
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.22
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.22
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.22
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.22
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.21
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.21
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.2
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.2
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.2
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.2
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.2
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.2
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.2
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.19
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	97.19
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.18
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.18
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.18
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.18
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	97.17
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.17
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.17
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.16
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.16
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.16
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.15
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.15
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.15
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.15
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.15
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.14
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.14
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.14
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	97.14
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.14
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.13
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.13
4had_A	350	Probable oxidoreductase protein; structural genomi	97.12
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.12
1spx_A	278	Short-chain reductase family member (5L265); paral	97.11
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.11
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.11
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.11
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.1
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.1
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.1
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.09
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.09
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.09
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.09
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.09
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.09
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.09
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.09
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.09
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.07
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.07
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.07
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.07
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.07
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.07
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.07
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.07
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.06
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.06
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.05
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.05
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.05
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.04
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.04
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.04
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.04
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.03
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.03
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.03
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.02
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.02
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.01
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.01
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.01
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.01
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.01
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.01
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.0
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.99
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.99
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.99
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	96.99
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.99
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	96.98
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.98
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.98
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.98
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.97
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.96
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.96
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.96
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.95
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.95
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.95
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.95
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.95
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.95
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.94
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.94
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.93
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.93
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.92
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.92
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.92
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.92
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	96.91
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.9
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	96.9
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.9
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.9
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.9
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.89
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.89
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.89
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	96.89
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.89
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	96.89
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.89
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.89
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.88
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.88
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.88
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.87
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.87
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.87
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.87
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.87
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	96.86
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.86
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.86
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.86
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.85
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.85
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	96.84
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.84
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.84
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.83
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.83
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.82
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.82
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.82
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.8
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.8
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.8
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.8
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.8
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.8
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.79
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.78
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.78
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.78
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	96.77
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.77
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.77
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.76
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.76
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	96.75
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.75
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	96.75
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.75
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.74
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.74
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.74
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	96.74
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.74
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.73
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.72
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.72
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.71
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.71
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.71
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	96.71
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	96.71
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.71
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	96.71
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	96.7
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.7
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.69
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.69
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	96.68
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	96.68
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.68
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.67
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.67
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.67
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.66
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.65
2o07_A	304	Spermidine synthase; structural genomics, structur	96.65
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	96.65
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.65

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=3.9e-42  Score=289.86  Aligned_cols=232  Identities=50%  Similarity=0.999  Sum_probs=209.3

Q ss_pred             cceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEc
Q 025101           24 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  103 (258)
Q Consensus        24 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~  103 (258)
                      |+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++
T Consensus       146 G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~  225 (378)
T 3uko_A          146 STFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGID  225 (378)
T ss_dssp             CCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEEC
T ss_pred             cceEeEEEechhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence            69999999999999999999999999999999999999988889999999999999999999999999999997899999


Q ss_pred             CCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhc-CCceEEEecccCCCCce
Q 025101          104 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK-GWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       104 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~-~~G~~v~~g~~~~~~~~  182 (258)
                      ++++|+++++++|+++++|+++ ..+++.+.+++.+++++|+||||+|.+.+++.+++++++ + |+++.+|........
T Consensus       226 ~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~-G~iv~~G~~~~~~~~  303 (378)
T 3uko_A          226 IDSKKYETAKKFGVNEFVNPKD-HDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQEI  303 (378)
T ss_dssp             SCTTHHHHHHTTTCCEEECGGG-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTT-CEEEECSCCCTTCCE
T ss_pred             CCHHHHHHHHHcCCcEEEcccc-CchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccC-CEEEEEcccCCCCcc
Confidence            9999999999999999999872 127899999999888999999999998779999999999 6 999999976555566


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEeeCC
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE  258 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~~  258 (258)
                      +++...++. ++++.|+..+.+..+++++++++++.+|++++.++++++|+++++++||+.+++++..|+||++++
T Consensus       304 ~~~~~~~~~-~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~Kvvi~~~~  378 (378)
T 3uko_A          304 STRPFQLVT-GRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVLDTSK  378 (378)
T ss_dssp             EECTHHHHT-TCEEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCSEEEEETTC
T ss_pred             ccCHHHHhc-CcEEEEEEecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCceEEEEecCC
Confidence            666666655 899999876655456789999999999999998999999999999999999998887799999875

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.7e-41  Score=284.17  Aligned_cols=230  Identities=31%  Similarity=0.519  Sum_probs=205.3

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus       142 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~  221 (371)
T 1f8f_A          142 QSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAV  221 (371)
T ss_dssp             TCCSBSEEEEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccccCeEEechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999998788899999999999999999999999999999679999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.++++++|+++++|+++   +++.+.+++.+++++|+|||++|.+..++.++++++++ |+++.+|........
T Consensus       222 ~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~  297 (371)
T 1f8f_A          222 DIVESRLELAKQLGATHVINSKT---QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTA  297 (371)
T ss_dssp             ESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCC
T ss_pred             CCCHHHHHHHHHcCCCEEecCCc---cCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEeCCCCCCCcc
Confidence            99999999999999999999988   78999999888768999999999877699999999999 999999976543345


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEeeC
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  257 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~  257 (258)
                      +++...++.+++++.++..+....+++++++++++.+|++++.+++++ |+++++++||+.+++++..|+|+++.
T Consensus       298 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~~Kvvv~~~  371 (371)
T 1f8f_A          298 QFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITLKPIIKIA  371 (371)
T ss_dssp             CCCHHHHHHTTCEEEECSGGGSCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSCSEEEEECC
T ss_pred             ccCHHHHHhCCCEEEEeCCCCCchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCceEEEEeeC
Confidence            666677788899999987554323467899999999999988888888 99999999999998887679999874

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=1.1e-40  Score=280.98  Aligned_cols=230  Identities=40%  Similarity=0.756  Sum_probs=201.4

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+||.+|+.+|+++
T Consensus       147 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~  226 (376)
T 1e3i_A          147 VSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAI  226 (376)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccceeEEEeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            38999999999999999999999999999999999999998788899999999999999999999999999999779999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.++++++|+++++|+++ ..+++.+.+++.+++++|+|||++|.+..++.+++++++++|+++.+|..  ....
T Consensus       227 ~~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~--~~~~  303 (376)
T 1e3i_A          227 DINGEKFPKAKALGATDCLNPRE-LDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK--VDEM  303 (376)
T ss_dssp             CSCGGGHHHHHHTTCSEEECGGG-CSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCS--SSEE
T ss_pred             cCCHHHHHHHHHhCCcEEEcccc-ccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCC--CCcc
Confidence            99999999999999999998863 11468888988887799999999998776999999999843899999973  2345


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      +++...++.++ ++.++..+.+..+++++++++++.+|++++.++++++|+++++++||+.+++++..|++|++
T Consensus       304 ~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~  376 (376)
T 1e3i_A          304 TIPTVDVILGR-SINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTILTF  376 (376)
T ss_dssp             EEEHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             ccCHHHhhccC-eEEEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCcceEEEeC
Confidence            67777777778 99988654333346799999999999988888899999999999999999988766999875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=8.8e-41  Score=280.59  Aligned_cols=227  Identities=22%  Similarity=0.353  Sum_probs=202.5

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      ..|+|+||+++|++.++++|+++++++|+ ++.++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++
T Consensus       135 ~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~  212 (370)
T 4ej6_A          135 RDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVIL  212 (370)
T ss_dssp             BCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCcceEEEEEchhhEEECCCCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            45999999999999999999999999998 556999999997 7889999999999999999999999999999988999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHH---hcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID---MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~---~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      +++++++.++++++|++.++|+++   +++.+.+++   ++++++|+||||+|.+.+++.++++++++ |+++.+|....
T Consensus       213 ~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~-G~vv~~G~~~~  288 (370)
T 4ej6_A          213 STRQATKRRLAEEVGATATVDPSA---GDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQ  288 (370)
T ss_dssp             ECSCHHHHHHHHHHTCSEEECTTS---SCHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECSCCCT
T ss_pred             ECCCHHHHHHHHHcCCCEEECCCC---cCHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEeccCC
Confidence            999999999999999999999988   889999988   77669999999999887799999999999 99999997665


Q ss_pred             CCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCe-e-EEEEee
Q 025101          179 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-L-RCVIWM  256 (258)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~-k~vi~~  256 (258)
                      ....+++...++.+++++.|+...    ..+++++++++++|++++.++++++|+++++.+||+.+.+++. . |+++++
T Consensus       289 ~~~~~~~~~~~~~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~  364 (370)
T 4ej6_A          289 GEKVEIEPFDILFRELRVLGSFIN----PFVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSA  364 (370)
T ss_dssp             TCCCCCCHHHHHHTTCEEEECCSC----TTCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC-
T ss_pred             CCccccCHHHHHhCCcEEEEeccC----hHHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEcc
Confidence            445677788889999999998644    3569999999999999999999999999999999999987763 3 888887


Q ss_pred             CC
Q 025101          257 GE  258 (258)
Q Consensus       257 ~~  258 (258)
                      ++
T Consensus       365 ~~  366 (370)
T 4ej6_A          365 ER  366 (370)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=4.4e-40  Score=277.06  Aligned_cols=232  Identities=39%  Similarity=0.768  Sum_probs=202.3

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus       143 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~  222 (374)
T 2jhf_A          143 TSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGV  222 (374)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccCeeEEEEchHHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            38999999999999999999999999999999999999998788899999999999999999999999999998779999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.++++++|+++++|+++ ..+++.+.+++.+++++|+|||++|.+..++.+++++++++|+++.+|........
T Consensus       223 ~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~  301 (374)
T 2jhf_A          223 DINKDKFAKAKEVGATECVNPQD-YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNL  301 (374)
T ss_dssp             CSCGGGHHHHHHTTCSEEECGGG-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCE
T ss_pred             cCCHHHHHHHHHhCCceEecccc-cchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCcc
Confidence            99999999999999999998863 11468888888877789999999998776999999999843899999976543455


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      +++...++.++ ++.++..+.+...++++++++++.+|++++.++++++|+++++++||+.+++++..|+++++
T Consensus       302 ~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~  374 (374)
T 2jhf_A          302 SMNPMLLLSGR-TWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF  374 (374)
T ss_dssp             EECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             ccCHHHHhcCC-eEEEeccCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCcceEEEeC
Confidence            67767777778 99988654433346799999999999988888889999999999999999988767999875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=7e-40  Score=275.70  Aligned_cols=230  Identities=38%  Similarity=0.700  Sum_probs=200.6

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+++|++.++++|++++++ |+++++++.|||+++.+..++++|++|||+|+|++|++++|+||.+|+.+|+++
T Consensus       144 ~G~~aey~~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~  222 (373)
T 1p0f_A          144 TSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGV  222 (373)
T ss_dssp             TCCSBSEEEEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeEEEEchhhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            4899999999999999999999999 999999999999998788899999999999999999999999999998779999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.++++++|+++++|+++ ..+++.+.+++.+++++|+||||+|.+.+++.+++++++++|+++.+|........
T Consensus       223 ~~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~  301 (373)
T 1p0f_A          223 GTHKDKFPKAIELGATECLNPKD-YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERL  301 (373)
T ss_dssp             CSCGGGHHHHHHTTCSEEECGGG-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCE
T ss_pred             CCCHHHHHHHHHcCCcEEEeccc-ccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCcc
Confidence            99999999999999999998863 11468888998887799999999998776999999999833899999976543445


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      +++...++.++ ++.|+..+.+. .++++++++++.+|++++.++++++|+++++++||+.+++++..|+++++
T Consensus       302 ~~~~~~~~~~~-~i~g~~~~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  373 (373)
T 1p0f_A          302 PLDPLLLLTGR-SLKGSVFGGFK-GEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIMIY  373 (373)
T ss_dssp             EECTHHHHTTC-EEEECSGGGCC-GGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSCSEEEEEC
T ss_pred             ccCHHHhccCc-eEEeeccCCcC-HHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCcceEEEeC
Confidence            66766777777 99988654322 26799999999999988888889999999999999999888767999875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=4.2e-40  Score=277.11  Aligned_cols=232  Identities=44%  Similarity=0.867  Sum_probs=202.5

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus       142 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~  221 (373)
T 2fzw_A          142 TSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGV  221 (373)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999998788899999999999999999999999999999779999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.++++++|+++++|+++ ..+++.+.+++.+++++|+|||++|.+..++.+++++++++|+++.+|........
T Consensus       222 ~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~  300 (373)
T 2fzw_A          222 DINKDKFARAKEFGATECINPQD-FSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEI  300 (373)
T ss_dssp             CSCGGGHHHHHHHTCSEEECGGG-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCE
T ss_pred             cCCHHHHHHHHHcCCceEecccc-ccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCcee
Confidence            99999999999999999998863 11468888988887799999999999776999999999843899999976543345


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      +++...++.++ ++.|+..+.+..+++++++++++.+|++++.++++++|+++++++||+.+++++..|+++++
T Consensus       301 ~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  373 (373)
T 2fzw_A          301 ATRPFQLVTGR-TWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  373 (373)
T ss_dssp             EECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             eeCHHHHhcCC-EEEEeccCCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCcceEEEeC
Confidence            66666777777 99988654433346799999999999998888899999999999999999888777999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.5e-40  Score=275.63  Aligned_cols=231  Identities=44%  Similarity=0.839  Sum_probs=201.9

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus       144 ~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~  223 (374)
T 1cdo_A          144 TSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAV  223 (374)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            38999999999999999999999999999999999999998788899999999999999999999999999999779999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.++++++|+++++|+++ ..+++.+.+++.+++++|+|||++|.+..++.+++++++++|+++.+|.... ...
T Consensus       224 ~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~-~~~  301 (374)
T 1cdo_A          224 DLNPDKFEKAKVFGATDFVNPND-HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL-HDV  301 (374)
T ss_dssp             CSCGGGHHHHHHTTCCEEECGGG-CSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSS-SCE
T ss_pred             cCCHHHHHHHHHhCCceEEeccc-cchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCC-CCc
Confidence            99999999999999999998863 1146888888887778999999999877699999999984389999997644 345


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      +++...++.++ ++.++..+.+..+++++++++++.+|++++.++++++|+++++++||+.+++++..|++++|
T Consensus       302 ~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  374 (374)
T 1cdo_A          302 ATRPIQLIAGR-TWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  374 (374)
T ss_dssp             EECHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             ccCHHHHhcCC-eEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCeeEEEEeC
Confidence            66777777777 99988654433346799999999999988888889999999999999999988767999875

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=5.5e-40  Score=275.28  Aligned_cols=240  Identities=22%  Similarity=0.274  Sum_probs=213.2

Q ss_pred             CCCCccccCCCCceeeeec------------------------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhh
Q 025101            3 RDQTSRFKDLRGETIHHFV------------------------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST   58 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~------------------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~t   58 (258)
                      |+++..|+  +||+|++..                        ..|+|+||+++|++.++++|+++++++||++++++.|
T Consensus        99 G~~v~~~~--vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~t  176 (363)
T 3uog_A           99 GKSVTRFR--PGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLT  176 (363)
T ss_dssp             CTTCCSCC--TTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHH
T ss_pred             CCCCCCCC--CCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHH
Confidence            56778888  999998651                        2489999999999999999999999999999999999


Q ss_pred             hhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHh
Q 025101           59 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        59 a~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ||+++.+..++++|++|||+|+|++|++++|+|+..|+ +|+++++++++.++++++|++.++|..+   +++.+.+++.
T Consensus       177 a~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~v~~~  252 (363)
T 3uog_A          177 AWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLE---EDWVERVYAL  252 (363)
T ss_dssp             HHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCEEEcCCc---ccHHHHHHHH
Confidence            99998888999999999999999999999999999999 9999999999999999999999999655   7899999999


Q ss_pred             cCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHH
Q 025101          139 TDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRY  217 (258)
Q Consensus       139 ~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (258)
                      +++ ++|+||||+|... +..++++++++ |+++.+|.... ....++...++.+++++.++..+.   +++++++++++
T Consensus       253 ~~g~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~  326 (363)
T 3uog_A          253 TGDRGADHILEIAGGAG-LGQSLKAVAPD-GRISVIGVLEG-FEVSGPVGPLLLKSPVVQGISVGH---RRALEDLVGAV  326 (363)
T ss_dssp             HTTCCEEEEEEETTSSC-HHHHHHHEEEE-EEEEEECCCSS-CEECCBTTHHHHTCCEEEECCCCC---HHHHHHHHHHH
T ss_pred             hCCCCceEEEECCChHH-HHHHHHHhhcC-CEEEEEecCCC-cccCcCHHHHHhCCcEEEEEecCC---HHHHHHHHHHH
Confidence            988 9999999999655 99999999999 99999997654 335566677888999999987543   57899999999


Q ss_pred             HcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          218 MDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       218 ~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      ++|.+  +++++++|+++++++||+.+++++..|+||++
T Consensus       327 ~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~  363 (363)
T 3uog_A          327 DRLGL--KPVIDMRYKFTEVPEALAHLDRGPFGKVVIEF  363 (363)
T ss_dssp             HHHTC--CCCEEEEEEGGGHHHHHHTGGGCCSBEEEEEC
T ss_pred             HcCCC--ccceeeEEcHHHHHHHHHHHHcCCCccEEEeC
Confidence            99964  56788999999999999999998833999975

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=8.3e-40  Score=273.19  Aligned_cols=244  Identities=17%  Similarity=0.239  Sum_probs=214.8

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEc-cC
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-LG   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G-~g   81 (258)
                      |+++..|+  +||+|+++...|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+| +|
T Consensus       101 G~~v~~~~--vGdrV~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g  178 (353)
T 4dup_A          101 GPGVSGYA--VGDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTS  178 (353)
T ss_dssp             CTTCCSCC--TTCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTS
T ss_pred             CCCCCCCC--CCCEEEEecCCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            56778898  9999999888899999999999999999999999999999999999999988889999999999996 59


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYA  161 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~  161 (258)
                      ++|++++|+++..|+ +|+++++++++.++++++|++.++|+++   +++.+.+++.+++++|++|||+|.+. ++.+++
T Consensus       179 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~---~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~  253 (353)
T 4dup_A          179 GIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAKRGINYRS---EDFAAVIKAETGQGVDIILDMIGAAY-FERNIA  253 (353)
T ss_dssp             HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHHSSCEEEEEESCCGGG-HHHHHH
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeCCc---hHHHHHHHHHhCCCceEEEECCCHHH-HHHHHH
Confidence            999999999999999 8999999999999999999999999988   88999999988449999999999876 999999


Q ss_pred             hhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCC-------CcHHHHHHHHHcCCCCCCccccccccc
Q 025101          162 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK-------SDIPILLKRYMDKELELDKFVTHEMKF  234 (258)
Q Consensus       162 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~  234 (258)
                      +++++ |+++.+|...+.....++...++.+++++.|+........       +.++++++++++|++  +++++++|++
T Consensus       254 ~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l  330 (353)
T 4dup_A          254 SLAKD-GCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTV--APVIHKVFAF  330 (353)
T ss_dssp             TEEEE-EEEEECCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSS--CCCEEEEEEG
T ss_pred             HhccC-CEEEEEEecCCCcccCCCHHHHHhcCceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCc--cCCcceEEeH
Confidence            99999 9999999765432222666778889999999976553211       117789999999965  4668899999


Q ss_pred             ccHHHHHHHHhcCCee-EEEEee
Q 025101          235 EEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       235 ~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +++++||+.+++++.. |+|+++
T Consensus       331 ~~~~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          331 EDVADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             GGHHHHHHHHHHTCCSSEEEEEC
T ss_pred             HHHHHHHHHHHhCCCCceEEEeC
Confidence            9999999999998877 999975

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=2.6e-39  Score=270.50  Aligned_cols=226  Identities=18%  Similarity=0.315  Sum_probs=197.5

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+++|++.++++|+++++++|+++. ++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus       125 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~~~-~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~  202 (356)
T 1pl8_A          125 DGNLCRFYKHNAAFCYKLPDNVTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVT  202 (356)
T ss_dssp             CCSCBSEEEEEGGGEEECCTTSCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCccccEEEeehHHEEECcCCCCHHHHHhhc-hHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            5899999999999999999999999998764 889999997 78899999999999999999999999999999789999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.++++++|+++++|+++.+.+++.+.+++.+++++|+|||++|.+..++.++++++++ |+++.+|...  ...
T Consensus       203 ~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~  279 (356)
T 1pl8_A          203 DLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGS--EMT  279 (356)
T ss_dssp             ESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCC--SCC
T ss_pred             CCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEecCC--CCC
Confidence            9999999999999999999987200156777888877568999999999987789999999999 9999999643  234


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEeeC
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  257 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~  257 (258)
                      .++...++.+++++.++...    ..+++++++++++|++++.++++++|+++++++||+.++++...|+|++++
T Consensus       280 ~~~~~~~~~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~~  350 (356)
T 1pl8_A          280 TVPLLHAAIREVDIKGVFRY----CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCD  350 (356)
T ss_dssp             CCCHHHHHHTTCEEEECCSC----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEECC
T ss_pred             ccCHHHHHhcceEEEEeccc----HHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCCCceEEEEeCC
Confidence            56666778889999998632    467999999999999888888999999999999999998883339999885

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=3.1e-40  Score=275.80  Aligned_cols=229  Identities=25%  Similarity=0.393  Sum_probs=201.5

Q ss_pred             cccceeeeEEEecc--eEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeE
Q 025101           22 SVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRI   99 (258)
Q Consensus        22 ~~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v   99 (258)
                      ..|+|+||+++|+.  .++++|+++++++|++++.++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|
T Consensus       116 ~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~V  194 (352)
T 3fpc_A          116 KDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRI  194 (352)
T ss_dssp             BCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSE
T ss_pred             CCCcccceEEeccccCeEEECCCCCCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEE
Confidence            35899999999976  8999999999999999999999999997 78899999999999999999999999999999789


Q ss_pred             EEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          100 IGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       100 ~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      ++++++++|.++++++|+++++|+++   +++.+.+++.+++ ++|+|||++|.+.+++.++++++++ |+++.+|....
T Consensus       195 i~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~  270 (352)
T 3fpc_A          195 FAVGSRKHCCDIALEYGATDIINYKN---GDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGE  270 (352)
T ss_dssp             EEECCCHHHHHHHHHHTCCEEECGGG---SCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCS
T ss_pred             EEECCCHHHHHHHHHhCCceEEcCCC---cCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEecccCC
Confidence            99999999999999999999999988   8999999999988 9999999999977799999999999 99999997665


Q ss_pred             CCceeechHH--HHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccc-cccHHHHHHHHhcCC-e-eEEE
Q 025101          179 GSQLSLSSFE--VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK-C-LRCV  253 (258)
Q Consensus       179 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~a~~~~~~~~-~-~k~v  253 (258)
                      ...++++...  +..+++++.++....  .+++++++++++++|++++.++++++|+ ++++++||+.+++++ . .|+|
T Consensus       271 ~~~~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvv  348 (352)
T 3fpc_A          271 GDNIDIPRSEWGVGMGHKHIHGGLCPG--GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPV  348 (352)
T ss_dssp             CSEEEEETTTTGGGTBCEEEEEBCCCC--HHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEE
T ss_pred             CCceecchhHhhhhccccEEEEeeccC--chhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEE
Confidence            4445554432  235688888875321  2457999999999999999889999999 999999999998854 3 3999


Q ss_pred             EeeC
Q 025101          254 IWMG  257 (258)
Q Consensus       254 i~~~  257 (258)
                      ++++
T Consensus       349 i~~~  352 (352)
T 3fpc_A          349 VILA  352 (352)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9874

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=2e-39  Score=269.79  Aligned_cols=222  Identities=23%  Similarity=0.338  Sum_probs=200.2

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      ..|+|+||+++|++.++++|+++++++|+++++++.|||+++ +..++++|++|||+|+|++|++++|+++.+|+ +|++
T Consensus       118 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~  195 (340)
T 3s2e_A          118 VNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAA  195 (340)
T ss_dssp             BCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEE
T ss_pred             CCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEE
Confidence            459999999999999999999999999999999999999997 67799999999999999999999999999999 9999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      +++++++.++++++|++.++|+++   +++.+.+++ +.+++|+|||++|....++.++++++++ |+++.+|...+  .
T Consensus       196 ~~~~~~~~~~~~~lGa~~~i~~~~---~~~~~~~~~-~~g~~d~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~  268 (340)
T 3s2e_A          196 VDIDDAKLNLARRLGAEVAVNARD---TDPAAWLQK-EIGGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPG--D  268 (340)
T ss_dssp             EESCHHHHHHHHHTTCSEEEETTT---SCHHHHHHH-HHSSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCSS--E
T ss_pred             EeCCHHHHHHHHHcCCCEEEeCCC---cCHHHHHHH-hCCCCCEEEEeCCCHHHHHHHHHHhccC-CEEEEeCCCCC--C
Confidence            999999999999999999999988   889988888 4348999999999888899999999999 99999997643  4


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      .+++...++.+++++.++....   +++++++++++++|++++.   +++++++++++||+.+++++.. |+|+++++
T Consensus       269 ~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~  340 (340)
T 3s2e_A          269 FGTPIFDVVLKGITIRGSIVGT---RSDLQESLDFAAHGDVKAT---VSTAKLDDVNDVFGRLREGKVEGRVVLDFSR  340 (340)
T ss_dssp             EEEEHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSCCCC---EEEECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred             CCCCHHHHHhCCeEEEEEecCC---HHHHHHHHHHHHhCCCCce---EEEEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            5667777888999999987543   5789999999999977653   4788999999999999998877 99999875

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=5.6e-39  Score=267.76  Aligned_cols=229  Identities=20%  Similarity=0.294  Sum_probs=199.6

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      ..|+|+||+++|++.++++|+++++++||+++ ++.+++++ ....++++|++|||+|+|++|++++|+++.+|+..+++
T Consensus       113 ~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~-~~~~~~~~-~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~  190 (346)
T 4a2c_A          113 RDGGFAEYIVVKRKNVFALPTDMPIEDGAFIE-PITVGLHA-FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTA  190 (346)
T ss_dssp             BCCSSBSEEEEEGGGEEECCTTSCGGGGGGHH-HHHHHHHH-HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCcccccccccchheEEECCCCCCHHHHHhch-HHHHHHHH-HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEE
Confidence            45899999999999999999999999999886 55666664 57889999999999999999999999999999977788


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCC
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  180 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  180 (258)
                      ++++++|.++++++|+++++|+++   .+..+.++.++++ ++|+|||++|.+.+++.++++++++ |+++.+|......
T Consensus       191 ~~~~~~k~~~a~~lGa~~~i~~~~---~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~-G~~v~~g~~~~~~  266 (346)
T 4a2c_A          191 IDISSEKLALAKSFGAMQTFNSSE---MSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDL  266 (346)
T ss_dssp             EESCHHHHHHHHHTTCSEEEETTT---SCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTT-CEEEECCCCSSCE
T ss_pred             EechHHHHHHHHHcCCeEEEeCCC---CCHHHHHHhhcccCCcccccccccccchhhhhhheecCC-eEEEEEeccCCCc
Confidence            999999999999999999999998   8888888888877 8999999999988899999999999 9999999765533


Q ss_pred             ce-eechHHHHhcCceEEecccCC--CCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          181 QL-SLSSFEVLHSGKILMGSLFGG--LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       181 ~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      .. ..+...++.|++++.|++.+.  ....++++++++++++|+++++++++++|+++++++||+.+++++.. |+||.+
T Consensus       267 ~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P  346 (346)
T 4a2c_A          267 HLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP  346 (346)
T ss_dssp             EECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred             cccccCHHHHhhceeEEEEEeccccCcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence            22 233455788899999986443  22356799999999999999999999999999999999999988876 999874

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=1.9e-39  Score=272.16  Aligned_cols=226  Identities=20%  Similarity=0.284  Sum_probs=196.9

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      ..|+|+||+++|++.++++|+ +++++|+++. ++.|||+++ +..++++|++|||+|+|++|++++|+||.+|+++|++
T Consensus       133 ~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~  209 (363)
T 3m6i_A          133 VPGLLRRYVNHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVI  209 (363)
T ss_dssp             SCCSCBSEEEEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCccceeEEEEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            469999999999999999999 9999999885 889999997 7889999999999999999999999999999955999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCC--CCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKN--CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~--~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      ++++++|.++++++ ++.++++..  .+.+++.+.+++.+++ ++|+||||+|++.+++.++++++++ |+++.+|....
T Consensus       210 ~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~  287 (363)
T 3m6i_A          210 TDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGVGKN  287 (363)
T ss_dssp             EESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECCCCCS
T ss_pred             ECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEccCCC
Confidence            99999999999999 655555431  1126788899999987 9999999999987699999999999 99999997543


Q ss_pred             CCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcC-Cee-EEEEee
Q 025101          179 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG-KCL-RCVIWM  256 (258)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~-k~vi~~  256 (258)
                        ...++...++.+++++.++...    .++++++++++++|++++.++++++|+++++++||+.++++ ... |++++.
T Consensus       288 --~~~~~~~~~~~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~  361 (363)
T 3m6i_A          288 --EIQIPFMRASVREVDLQFQYRY----CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQS  361 (363)
T ss_dssp             --CCCCCHHHHHHHTCEEEECCSC----SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEEC
T ss_pred             --CccccHHHHHhcCcEEEEccCC----HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEec
Confidence              3446666788889999998643    57899999999999999899999999999999999999987 344 999998


Q ss_pred             CC
Q 025101          257 GE  258 (258)
Q Consensus       257 ~~  258 (258)
                      ++
T Consensus       362 ~~  363 (363)
T 3m6i_A          362 LE  363 (363)
T ss_dssp             C-
T ss_pred             CC
Confidence            65

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.5e-39  Score=267.43  Aligned_cols=224  Identities=22%  Similarity=0.326  Sum_probs=196.7

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+++|++.++++|+++++++|+++. ++.|||+++ +..++++|++|||+|+|++|++++|+++.+|+ +|+++
T Consensus       122 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~  198 (352)
T 1e3j_A          122 DGNLARYYVHAADFCHKLPDNVSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCT  198 (352)
T ss_dssp             CCSCBSEEEEEGGGEEECCTTSCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             CccceeEEEeChHHeEECcCCCCHHHHHhhc-hHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEE
Confidence            5999999999999999999999999998774 889999997 78899999999999999999999999999999 79999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcC---C-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD---G-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~---~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      ++++++.++++++|+++++|+++  .+++.+.+++.++   + ++|+|||++|.+.+++.++++++++ |+++.+|....
T Consensus       199 ~~~~~~~~~~~~lGa~~~~~~~~--~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~  275 (352)
T 1e3j_A          199 ARSPRRLEVAKNCGADVTLVVDP--AKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQ  275 (352)
T ss_dssp             ESCHHHHHHHHHTTCSEEEECCT--TTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCSS
T ss_pred             cCCHHHHHHHHHhCCCEEEcCcc--cccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC
Confidence            99999999999999999998872  1467777887775   4 8999999999987689999999999 99999996432


Q ss_pred             CCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCC-ee-EEEEee
Q 025101          179 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-CL-RCVIWM  256 (258)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~-k~vi~~  256 (258)
                        ..+++...++.+++++.++...    ..+++++++++.+|++++.++++++|+++++++||+.+++++ .. |+|+++
T Consensus       276 --~~~~~~~~~~~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~  349 (352)
T 1e3j_A          276 --MVTVPLVNACAREIDIKSVFRY----CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISC  349 (352)
T ss_dssp             --CCCCCHHHHHTTTCEEEECCSC----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEEC
T ss_pred             --CccccHHHHHhcCcEEEEeccc----hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEec
Confidence              3456666788889999988532    467999999999999888888989999999999999998886 35 999998


Q ss_pred             CC
Q 025101          257 GE  258 (258)
Q Consensus       257 ~~  258 (258)
                      ++
T Consensus       350 ~~  351 (352)
T 1e3j_A          350 RQ  351 (352)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=5.3e-39  Score=267.96  Aligned_cols=225  Identities=23%  Similarity=0.366  Sum_probs=198.4

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      ..|+|+||+++|++.++++|+++++++|++++ ++.|||+++ +..++ +|++|||+|+|++|++++|+++.+|+.+|++
T Consensus       121 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~  197 (348)
T 2d8a_A          121 TDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIV  197 (348)
T ss_dssp             SCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCcCcceEEeChHHeEECCCCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            35999999999999999999999999999886 889999998 67888 9999999999999999999999999877999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCC
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  180 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  180 (258)
                      +++++++.++++++|+++++|+++   +++.+.+++.+++ ++|+|||++|.+..++.++++++++ |+++.+|....  
T Consensus       198 ~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--  271 (348)
T 2d8a_A          198 SEPSDFRRELAKKVGADYVINPFE---EDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPG--  271 (348)
T ss_dssp             ECSCHHHHHHHHHHTCSEEECTTT---SCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCSS--
T ss_pred             ECCCHHHHHHHHHhCCCEEECCCC---cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC--
Confidence            999999999999999999999988   8899999999887 8999999999977699999999999 99999997543  


Q ss_pred             ceeech-HHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccc-cccHHHHHHHHhcCCeeEEEEeeC
Q 025101          181 QLSLSS-FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKCLRCVIWMG  257 (258)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~k~vi~~~  257 (258)
                      ...++. ..++.+++++.|+....  ..++++++++++.+|++++.++++++|+ ++++++||+.++++...|+|++++
T Consensus       272 ~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~gKvvi~~~  348 (348)
T 2d8a_A          272 KVTIDFNNLIIFKALTIYGITGRH--LWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVFMLK  348 (348)
T ss_dssp             CCCCCHHHHTTTTTCEEEECCCCC--SHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHTTCCSEEEEEC-
T ss_pred             CcccCchHHHHhCCcEEEEecCCC--cHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhCCCceEEEEeeC
Confidence            345565 56778899999985432  1467899999999999888888999999 999999999998754449999864

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.7e-39  Score=268.71  Aligned_cols=218  Identities=22%  Similarity=0.345  Sum_probs=192.7

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchh---hcchhhhhhhhhhhhh-cCCCCCCEEEEEccCHHHHHHHHHHHHc-CC
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRAC---LLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLC-GA   96 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa---~~~~~~~ta~~~l~~~-~~~~~g~~vlI~G~g~~G~~a~~l~~~~-g~   96 (258)
                      ..|+|+||+++|++.++++|+++++++|+   .+++++.|||+++.+. .++++|++|||+|+|++|++++|+||.+ |+
T Consensus       133 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga  212 (359)
T 1h2b_A          133 IDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA  212 (359)
T ss_dssp             BCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC
T ss_pred             CCCcccceEEechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            35999999999999999999999999999   7888899999998655 8999999999999999999999999999 99


Q ss_pred             CeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChh--hHHHHHHhhhcCCceEEEe
Q 025101           97 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLAS--LVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus        97 ~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~--~~~~~~~~l~~~~G~~v~~  173 (258)
                       +|++++++++|.++++++|+++++|+++   + +.+.+++++++ ++|+|||++|++.  +++.++++  ++ |+++.+
T Consensus       213 -~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~-~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~-G~~v~~  284 (359)
T 1h2b_A          213 -TVIALDVKEEKLKLAERLGADHVVDARR---D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RM-GRLIIV  284 (359)
T ss_dssp             -EEEEEESSHHHHHHHHHTTCSEEEETTS---C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EE-EEEEEC
T ss_pred             -eEEEEeCCHHHHHHHHHhCCCEEEeccc---h-HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CC-CEEEEE
Confidence             8999999999999999999999999987   6 88889998877 8999999999985  68888888  88 999999


Q ss_pred             cccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EE
Q 025101          174 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RC  252 (258)
Q Consensus       174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~  252 (258)
                      |.....   .++...++.+++++.++....   .++++++++++.+|+++  +.+ ++|+++++++||+.+++++.. |+
T Consensus       285 g~~~~~---~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~--~~i-~~~~l~~~~~A~~~~~~~~~~gKv  355 (359)
T 1h2b_A          285 GYGGEL---RFPTIRVISSEVSFEGSLVGN---YVELHELVTLALQGKVR--VEV-DIHKLDEINDVLERLEKGEVLGRA  355 (359)
T ss_dssp             CCSSCC---CCCHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSCC--CCE-EEEEGGGHHHHHHHHHTTCCSSEE
T ss_pred             eCCCCC---CCCHHHHHhCCcEEEEecCCC---HHHHHHHHHHHHcCCCc--ceE-EEEeHHHHHHHHHHHHcCCCceEE
Confidence            975432   566667788999999986433   46799999999999765  447 999999999999999988765 99


Q ss_pred             EEee
Q 025101          253 VIWM  256 (258)
Q Consensus       253 vi~~  256 (258)
                      |+++
T Consensus       356 vv~~  359 (359)
T 1h2b_A          356 VLIP  359 (359)
T ss_dssp             EEEC
T ss_pred             EeeC
Confidence            9874

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=1.6e-38  Score=265.27  Aligned_cols=241  Identities=24%  Similarity=0.336  Sum_probs=212.6

Q ss_pred             CCCCccccCCCCceeeee----------------------------ccccceeeeEEEecceEEEcCCCCCccchhhcch
Q 025101            3 RDQTSRFKDLRGETIHHF----------------------------VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC   54 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~----------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~   54 (258)
                      |+++..|+  +||+|+..                            ...|+|+||+.+|++.++++|+++++++|+++++
T Consensus        70 G~~V~~~~--~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~  147 (348)
T 4eez_A           70 GADVSSLQ--VGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITC  147 (348)
T ss_dssp             CTTCCSCC--TTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHH
T ss_pred             Cceeeecc--cCCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhccc
Confidence            56778888  99999632                            1238999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHH
Q 025101           55 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQI  134 (258)
Q Consensus        55 ~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~  134 (258)
                      ++.|||+++ +..++++|++|||+|+|++|.+++|+++.++..+|++++++++|.++++++|++.++|+++   +++.+.
T Consensus       148 ~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~---~~~~~~  223 (348)
T 4eez_A          148 AGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGD---VNPVDE  223 (348)
T ss_dssp             HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-C---CCHHHH
T ss_pred             ceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCC---CCHHHH
Confidence            999999986 6778999999999999999999999999775449999999999999999999999999999   899999


Q ss_pred             HHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHH
Q 025101          135 IIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPIL  213 (258)
Q Consensus       135 i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (258)
                      +++.+++ ++|.++|+++++.++..++++++++ |+++.+|....  ...++...++.+++++.|+..+.   +.+++++
T Consensus       224 v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~gs~~~~---~~~~~~~  297 (348)
T 4eez_A          224 IKKITGGLGVQSAIVCAVARIAFEQAVASLKPM-GKMVAVAVPNT--EMTLSVPTVVFDGVEVAGSLVGT---RLDLAEA  297 (348)
T ss_dssp             HHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEE-EEEEECCCCSC--EEEECHHHHHHSCCEEEECCSCC---HHHHHHH
T ss_pred             hhhhcCCCCceEEEEeccCcchhheeheeecCC-ceEEEEeccCC--CCccCHHHHHhCCeEEEEEecCC---HHHHHHH
Confidence            9999998 9999999999998899999999999 99999986543  45677778888999999987554   5789999


Q ss_pred             HHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          214 LKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       214 ~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      ++++++|+++  +.+ ++|+++++++||+.+++++.. |+||+|++
T Consensus       298 ~~l~~~g~i~--p~~-~~~~l~~~~~A~~~l~~g~~~GKvVl~~sk  340 (348)
T 4eez_A          298 FQFGAEGKVK--PIV-ATRKLEEINDIIDEMKAGKIEGRMVIDFTK  340 (348)
T ss_dssp             HHHHHTTSCC--CCE-EEECGGGHHHHHHHHHTTCCSSEEEEECC-
T ss_pred             HHHHHcCCCE--EEE-EEEeHHHHHHHHHHHHCCCCccEEEEEccc
Confidence            9999999775  334 899999999999999999877 99999863

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=1.3e-38  Score=265.45  Aligned_cols=221  Identities=24%  Similarity=0.349  Sum_probs=195.3

Q ss_pred             cccceeeeEEEe-cceEEEcCCCCCccchhhcchhhhhhhhhhhh-hcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeE
Q 025101           22 SVSSFSEYTVLD-IAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRI   99 (258)
Q Consensus        22 ~~g~~~~~~~v~-~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v   99 (258)
                      ..|+|+||+++| ++.++++|+ +++++|+.+++++.|||+++.+ ...+++|++|||+|+|++|++++|+++.+|..+|
T Consensus       121 ~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~V  199 (345)
T 3jv7_A          121 SPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARV  199 (345)
T ss_dssp             BCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEE
T ss_pred             CCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEE
Confidence            369999999999 999999999 9999999999999999999866 4589999999999999999999999999944499


Q ss_pred             EEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          100 IGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       100 ~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      ++++++++|.++++++|++.++|+++    ++.+.+++.+++ ++|+||||+|++.+++.++++++++ |+++.+|....
T Consensus       200 i~~~~~~~~~~~~~~lGa~~~i~~~~----~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~  274 (345)
T 3jv7_A          200 IAVDLDDDRLALAREVGADAAVKSGA----GAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAG  274 (345)
T ss_dssp             EEEESCHHHHHHHHHTTCSEEEECST----THHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCTT
T ss_pred             EEEcCCHHHHHHHHHcCCCEEEcCCC----cHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCC
Confidence            99999999999999999999998764    788899999988 9999999999986799999999999 99999997654


Q ss_pred             CCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          179 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      . ..+++. .++.+++++.++....   .++++++++++++|++++   ++++|+++++++||+.+.+++.. |+|+++
T Consensus       275 ~-~~~~~~-~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~---~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          275 A-HAKVGF-FMIPFGASVVTPYWGT---RSELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLREGSIRGRGVVVP  345 (345)
T ss_dssp             C-CEEEST-TTSCTTCEEECCCSCC---HHHHHHHHHHHHTTCCCC---CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred             C-CCCcCH-HHHhCCCEEEEEecCC---HHHHHHHHHHHHcCCCce---EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence            2 445554 6778899999987543   478999999999998775   45899999999999999998877 999875

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=1.3e-38  Score=265.08  Aligned_cols=225  Identities=20%  Similarity=0.301  Sum_probs=198.8

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      ..|+|+||+++|++.++++|+++++++|+++. ++.|||+++.+..++ +|++|||+|+|++|++++|+|+.+|+.+|++
T Consensus       117 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~  194 (343)
T 2dq4_A          117 RDGGFAEYVVVPAENAWVNPKDLPFEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILV  194 (343)
T ss_dssp             BCCSSBSEEEEEGGGEEEECTTSCHHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCcceeEEEEchHHeEECCCCCCHHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            35899999999999999999999999999885 788999998547888 9999999999999999999999999867999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      +++++++.++++++ ++.++|+++   +++.+.+++.+++++|+|||++|.+..++.++++++++ |+++.+|...  ..
T Consensus       195 ~~~~~~~~~~~~~l-a~~v~~~~~---~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~--~~  267 (343)
T 2dq4_A          195 SDPNPYRLAFARPY-ADRLVNPLE---EDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPS--DP  267 (343)
T ss_dssp             ECSCHHHHGGGTTT-CSEEECTTT---SCHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCS--SC
T ss_pred             ECCCHHHHHHHHHh-HHhccCcCc---cCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC--CC
Confidence            99999999999999 999999988   78999999888339999999999976699999999999 9999999753  34


Q ss_pred             eeech-HHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCeeEEEEeeC
Q 025101          182 LSLSS-FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  257 (258)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~  257 (258)
                      ..++. ..++.+++++.|+....  ..++++++++++++|++++.++++++|+++++++||+.+++++..|+|++++
T Consensus       268 ~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvv~~~~  342 (343)
T 2dq4_A          268 IRFDLAGELVMRGITAFGIAGRR--LWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVILDPK  342 (343)
T ss_dssp             EEECHHHHTGGGTCEEEECCSCC--TTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSCSEEEEETT
T ss_pred             ceeCcHHHHHhCceEEEEeecCC--CHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCceEEEEeeC
Confidence            56666 67788899999986431  2567999999999999888888999999999999999998876679999875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=3e-38  Score=265.35  Aligned_cols=248  Identities=17%  Similarity=0.196  Sum_probs=208.5

Q ss_pred             CCCCccccCCCCceeeeec--------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhh-cCC----
Q 025101            3 RDQTSRFKDLRGETIHHFV--------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT-ANV----   69 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~--------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~-~~~----   69 (258)
                      |+++..|+  +||+|++..        ..|+|+||+++|++.++++|+++++++|+++++++.|||+++.+. .++    
T Consensus        78 G~~v~~~~--~GdrV~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~  155 (371)
T 3gqv_A           78 GSDVTHIQ--VGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPS  155 (371)
T ss_dssp             CTTCCSCC--TTCEEEEECCTTCTTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSS
T ss_pred             CCCCCCCC--CCCEEEEeccCCCCCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCc
Confidence            56778888  999999764        359999999999999999999999999999999999999998776 553    


Q ss_pred             -------CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC
Q 025101           70 -------EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG  141 (258)
Q Consensus        70 -------~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~  141 (258)
                             ++|++|||+|+ |++|++++|+|+..|+ +|+++. +++|.++++++|+++++|+++   +++.+.+++++++
T Consensus       156 ~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~vi~~~~---~~~~~~v~~~t~g  230 (371)
T 3gqv_A          156 ADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKSRGAEEVFDYRA---PNLAQTIRTYTKN  230 (371)
T ss_dssp             CSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS---TTHHHHHHHHTTT
T ss_pred             cccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHHcCCcEEEECCC---chHHHHHHHHccC
Confidence                   89999999998 8999999999999999 899886 889999999999999999998   8999999999988


Q ss_pred             CCCEEEEecCChhhHHHHHHhh-hcCCceEEEecccCCC----Cceee--c-hHHHHhcCceEEecccCCCCC------C
Q 025101          142 GADYCFECVGLASLVQEAYACC-RKGWGKTIVLGVDQPG----SQLSL--S-SFEVLHSGKILMGSLFGGLKA------K  207 (258)
Q Consensus       142 ~~d~v~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~~----~~~~~--~-~~~~~~~~~~~~~~~~~~~~~------~  207 (258)
                      ++|+||||+|++.+++.+++++ +++ |+++.+|.....    .....  . ...++.|++++.|+.......      .
T Consensus       231 ~~d~v~d~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~  309 (371)
T 3gqv_A          231 NLRYALDCITNVESTTFCFAAIGRAG-GHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGE  309 (371)
T ss_dssp             CCCEEEESSCSHHHHHHHHHHSCTTC-EEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHH
T ss_pred             CccEEEECCCchHHHHHHHHHhhcCC-CEEEEEecCccccccccccceeeeeeeeeccccccccccccccccHHHHHHHH
Confidence            8999999999987799999999 588 999999965431    11222  1 234677888888875332111      1


Q ss_pred             CcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee--EEEEeeCC
Q 025101          208 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL--RCVIWMGE  258 (258)
Q Consensus       208 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--k~vi~~~~  258 (258)
                      +.++++++++.+|++++.+.+++.|+++++++||+.+++++..  |+|+++++
T Consensus       310 ~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkkvvv~~~~  362 (371)
T 3gqv_A          310 DLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVVRLEG  362 (371)
T ss_dssp             HHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCEEEEEECC
T ss_pred             HHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEEEEEEeCC
Confidence            1245788999999999998888889999999999999988764  88888764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=5.6e-38  Score=260.81  Aligned_cols=221  Identities=23%  Similarity=0.401  Sum_probs=196.2

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .|+|+||+++|++.++++|+++++++|+++++++.|||+++.. .++++|++|||+|+|++|++++|+++..|+ +|+++
T Consensus       117 ~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~  194 (339)
T 1rjw_A          117 DGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAV  194 (339)
T ss_dssp             CCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEE
T ss_pred             CCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEE
Confidence            5899999999999999999999999999999999999999754 489999999999998899999999999999 99999


Q ss_pred             cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCce
Q 025101          103 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  182 (258)
Q Consensus       103 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  182 (258)
                      ++++++.++++++|++.++|+++   +++.+.+++.+ +++|+|||++|.+..++.++++++++ |+++.+|...+  ..
T Consensus       195 ~~~~~~~~~~~~lGa~~~~d~~~---~~~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~  267 (339)
T 1rjw_A          195 DIGDEKLELAKELGADLVVNPLK---EDAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPE--EM  267 (339)
T ss_dssp             CSCHHHHHHHHHTTCSEEECTTT---SCHHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSS--EE
T ss_pred             eCCHHHHHHHHHCCCCEEecCCC---ccHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCC--CC
Confidence            99999999999999999999887   78888888877 58999999999876699999999999 99999997643  35


Q ss_pred             eechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          183 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      +++...++.+++++.++..+.   .++++++++++.+|.+++.   +++|+++++++||+.+++++.. |+|+++++
T Consensus       268 ~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  338 (339)
T 1rjw_A          268 PIPIFDTVLNGIKIIGSIVGT---RKDLQEALQFAAEGKVKTI---IEVQPLEKINEVFDRMLKGQINGRVVLTLED  338 (339)
T ss_dssp             EEEHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred             ccCHHHHHhCCcEEEEeccCC---HHHHHHHHHHHHcCCCCcc---EEEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            667777888999999986433   4679999999999977653   4799999999999999988765 99999864

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=1.9e-38  Score=265.02  Aligned_cols=247  Identities=17%  Similarity=0.247  Sum_probs=210.0

Q ss_pred             CCCC-ccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-
Q 025101            3 RDQT-SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-   80 (258)
Q Consensus         3 ~~~~-~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-   80 (258)
                      |+++ ..|+  +||+|+++...|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+ 
T Consensus        95 G~~v~~~~~--vGdrV~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~  172 (354)
T 2j8z_A           95 GPGCQGHWK--IGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGL  172 (354)
T ss_dssp             CSCC--CCC--TTCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTT
T ss_pred             CCCcCCCCC--CCCEEEEecCCCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCc
Confidence            5567 7888  99999988777999999999999999999999999999999999999999878889999999999985 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHH
Q 025101           81 GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEA  159 (258)
Q Consensus        81 g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~  159 (258)
                      |++|++++|+++..|+ +|+++++++++.+.++++|++.++|+.+   +++.+.+.+.+++ ++|++|||+|.+. +..+
T Consensus       173 ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~G~~~-~~~~  247 (354)
T 2j8z_A          173 SGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKK---EDFSEATLKFTKGAGVNLILDCIGGSY-WEKN  247 (354)
T ss_dssp             SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESSCGGG-HHHH
T ss_pred             cHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC---hHHHHHHHHHhcCCCceEEEECCCchH-HHHH
Confidence            9999999999999999 9999999999999999999999999988   8899999988876 8999999999885 8999


Q ss_pred             HHhhhcCCceEEEecccCCCCceeech-HHHHhcCceEEecccCCCCCC-------CcHHHHHHHHHcC-CCCCCccccc
Q 025101          160 YACCRKGWGKTIVLGVDQPGSQLSLSS-FEVLHSGKILMGSLFGGLKAK-------SDIPILLKRYMDK-ELELDKFVTH  230 (258)
Q Consensus       160 ~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g-~~~~~~~~~~  230 (258)
                      +++++++ |+++.+|...+ ....++. ..++.+++++.++........       ..++++++++.+| ++++.+++++
T Consensus       248 ~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~  325 (354)
T 2j8z_A          248 VNCLALD-GRWVLYGLMGG-GDINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDR  325 (354)
T ss_dssp             HHHEEEE-EEEEECCCTTC-SCCCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEE
T ss_pred             HHhccCC-CEEEEEeccCC-CccCCChhHHHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccce
Confidence            9999999 99999997543 2344565 667888999999865432110       0123577888889 5556677889


Q ss_pred             ccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          231 EMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       231 ~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      +|+++++++||+.+++++.. |+|+++++
T Consensus       326 ~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  354 (354)
T 2j8z_A          326 IYPVTEIQEAHKYMEANKNIGKIVLELPQ  354 (354)
T ss_dssp             EEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred             EEcHHHHHHHHHHHHhCCCCceEEEecCC
Confidence            99999999999999887766 99998864

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=3.1e-38  Score=261.99  Aligned_cols=244  Identities=19%  Similarity=0.288  Sum_probs=212.9

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEe-cceEEEcCCCCCccc---hhhcchhhhhhhhhhhhhcCCCCCCEEEEE
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVVKVDPTVPPNR---ACLLSCGVSTGVGAAWRTANVEVGSTVVIF   78 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~-~~~~~~~p~~~~~~~---aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~   78 (258)
                      |+++..|+  +||+|+.+ ..|+|+||+++| ++.++++|+++++++   ++++++.+.|||+++.+..++++|++|||+
T Consensus        79 G~~v~~~~--~GdrV~~~-~~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~  155 (334)
T 3qwb_A           79 GKGVTNFE--VGDQVAYI-SNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLF  155 (334)
T ss_dssp             CTTCCSCC--TTCEEEEE-CSSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEES
T ss_pred             CCCCCCCC--CCCEEEEe-eCCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEE
Confidence            56778888  99999965 479999999999 999999999999999   888888999999998878899999999999


Q ss_pred             c-cCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhH
Q 025101           79 G-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLV  156 (258)
Q Consensus        79 G-~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~  156 (258)
                      | +|++|++++|+++..|+ +|+++++++++.++++++|++.++|+++   +++.+.+.+.+++ ++|++|||+|... +
T Consensus       156 Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~---~~~~~~~~~~~~~~g~D~vid~~g~~~-~  230 (334)
T 3qwb_A          156 AAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASK---EDILRQVLKFTNGKGVDASFDSVGKDT-F  230 (334)
T ss_dssp             STTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEECCGGGG-H
T ss_pred             CCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEeCCC---chHHHHHHHHhCCCCceEEEECCChHH-H
Confidence            9 59999999999999999 9999999999999999999999999988   8999999999877 9999999999855 9


Q ss_pred             HHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC-C----CcHHHHHHHHHcCCCCCCcccccc
Q 025101          157 QEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA-K----SDIPILLKRYMDKELELDKFVTHE  231 (258)
Q Consensus       157 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~g~~~~~~~~~~~  231 (258)
                      +.++++++++ |+++.+|...+ ....++...++.|++++.++....+.. +    +.++++++++.+|++++.  ++++
T Consensus       231 ~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~  306 (334)
T 3qwb_A          231 EISLAALKRK-GVFVSFGNASG-LIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIK--IYKT  306 (334)
T ss_dssp             HHHHHHEEEE-EEEEECCCTTC-CCCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCC--EEEE
T ss_pred             HHHHHHhccC-CEEEEEcCCCC-CCCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCc--eeeE
Confidence            9999999999 99999997643 233456666778899999865443321 2    234689999999977765  8899


Q ss_pred             cccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          232 MKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       232 ~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      |+++++++||+.+++++.. |+|+++++
T Consensus       307 ~~l~~~~~A~~~~~~~~~~gKvvi~~~q  334 (334)
T 3qwb_A          307 YPLRDYRTAAADIESRKTVGKLVLEIPQ  334 (334)
T ss_dssp             EEGGGHHHHHHHHHTTCCCBEEEEECCC
T ss_pred             EcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence            9999999999999998877 99999864

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=7e-39  Score=266.51  Aligned_cols=240  Identities=20%  Similarity=0.277  Sum_probs=203.2

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |+++. |+  +||+|+++...|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+ |
T Consensus        94 G~~v~-~~--vGDrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg  170 (342)
T 4eye_A           94 PEGSG-IK--PGDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAG  170 (342)
T ss_dssp             CTTSS-CC--TTCEEEEECSSCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTS
T ss_pred             CCCCC-CC--CCCEEEEecCCCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence            55666 77  99999988778999999999999999999999999999999999999999888899999999999997 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAY  160 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~  160 (258)
                      ++|++++|+++..|+ +|+++++++++.++++++|++.++|++    +++.+.+++.+++ ++|++|||+|.+. +..++
T Consensus       171 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~v~~~~----~~~~~~v~~~~~~~g~Dvvid~~g~~~-~~~~~  244 (342)
T 4eye_A          171 GIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPLE----EGWAKAVREATGGAGVDMVVDPIGGPA-FDDAV  244 (342)
T ss_dssp             HHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEESS----TTHHHHHHHHTTTSCEEEEEESCC--C-HHHHH
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEecCc----hhHHHHHHHHhCCCCceEEEECCchhH-HHHHH
Confidence            999999999999999 999999999999999999999998876    3788899999988 9999999999876 99999


Q ss_pred             HhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCC------CCCcHHHHHHHHHcCCCCCCccccccccc
Q 025101          161 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK------AKSDIPILLKRYMDKELELDKFVTHEMKF  234 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  234 (258)
                      ++++++ |+++.+|...+. ...++...++.+++++.|+..+.+.      ..+.++++++++++|   ++++++++|++
T Consensus       245 ~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g---l~~~i~~~~~l  319 (342)
T 4eye_A          245 RTLASE-GRLLVVGFAAGG-IPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG---MRPPVSARIPL  319 (342)
T ss_dssp             HTEEEE-EEEEEC-----------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT---CCCCEEEEEEG
T ss_pred             HhhcCC-CEEEEEEccCCC-CCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC---CCCCcceEEeH
Confidence            999999 999999965432 2334444567889999998643321      124588899999999   45668899999


Q ss_pred             ccHHHHHHHHhcCCee-EEEEee
Q 025101          235 EEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       235 ~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +++++||+.+.+++.. |+|+++
T Consensus       320 ~~~~~A~~~~~~~~~~gKvvl~P  342 (342)
T 4eye_A          320 SEGRQALQDFADGKVYGKMVLVP  342 (342)
T ss_dssp             GGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHHHHhCCCCceEEEeC
Confidence            9999999999998877 999874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=4.7e-39  Score=272.75  Aligned_cols=226  Identities=20%  Similarity=0.241  Sum_probs=197.6

Q ss_pred             ccceeeeEEEecc--eEEEcCCCCCccc----hhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 025101           23 VSSFSEYTVLDIA--HVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA   96 (258)
Q Consensus        23 ~g~~~~~~~v~~~--~~~~~p~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~   96 (258)
                      .|+|+||+++|++  .++++|+++++++    +++++.++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+
T Consensus       132 ~G~~aey~~v~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga  210 (398)
T 2dph_A          132 SGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGA  210 (398)
T ss_dssp             CCSSBSEEEESSHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CceeeeeEEeccccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4899999999987  8999999999998    888999999999998 78899999999999999999999999999998


Q ss_pred             CeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccH-HHHHHHhcCC-CCCEEEEecCChh--------------hHHHHH
Q 025101           97 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSV-SQIIIDMTDG-GADYCFECVGLAS--------------LVQEAY  160 (258)
Q Consensus        97 ~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~-~~~i~~~~~~-~~d~v~d~~g~~~--------------~~~~~~  160 (258)
                      .+|+++++++++.++++++|++ ++|+++   +++ .+.+++.+++ ++|+|||++|...              +++.++
T Consensus       211 ~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~---~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~  286 (398)
T 2dph_A          211 ACVIVGDQNPERLKLLSDAGFE-TIDLRN---SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLF  286 (398)
T ss_dssp             SEEEEEESCHHHHHHHHTTTCE-EEETTS---SSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHcCCc-EEcCCC---cchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHH
Confidence            7899999999999999999995 889887   675 8889998888 8999999999752              589999


Q ss_pred             HhhhcCCceEEEecccCC-----------CCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC--CCcc
Q 025101          161 ACCRKGWGKTIVLGVDQP-----------GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE--LDKF  227 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~  227 (258)
                      ++++++ |+++.+|....           .....++...++.|++++.++...   ..+.++++++++.+|+++  +.++
T Consensus       287 ~~l~~g-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~---~~~~~~~~~~l~~~g~l~~~~~~~  362 (398)
T 2dph_A          287 DVVRAG-GAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP---VTNYNRHLTEAILWDQMPYLSKVM  362 (398)
T ss_dssp             HHEEEE-EEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCC---GGGTHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHhcC-CEEEEeccccccccccccccccCCcccccHHHHhhcCCEEEEeccC---cHHHHHHHHHHHHcCCCCccchhh
Confidence            999999 99999996521           123456666778899999887532   246799999999999888  7778


Q ss_pred             cccccccccHHHHHHHHhcCCeeEEEEeeC
Q 025101          228 VTHEMKFEEINSAFDLLIKGKCLRCVIWMG  257 (258)
Q Consensus       228 ~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~  257 (258)
                      ++++|+++++++||+.+++++..|+|++++
T Consensus       363 i~~~~~l~~~~~A~~~~~~~~~gKvvv~~~  392 (398)
T 2dph_A          363 NIEVITLDQAPDGYAKFDKGSPAKFVIDPH  392 (398)
T ss_dssp             CEEEECSTTHHHHHHHHHTTCSCEEEECTT
T ss_pred             EEEEEcHHHHHHHHHHHhcCCceEEEEecC
Confidence            889999999999999998876689999875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.8e-38  Score=266.38  Aligned_cols=224  Identities=24%  Similarity=0.335  Sum_probs=196.4

Q ss_pred             ccceeeeEEE-ecceEEEcCCCCCcc-chhhcchhhhhhhhhhhhhcC-CCCCCEEEEEccCHHHHHHHHHHHHcCCCeE
Q 025101           23 VSSFSEYTVL-DIAHVVKVDPTVPPN-RACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRI   99 (258)
Q Consensus        23 ~g~~~~~~~v-~~~~~~~~p~~~~~~-~aa~~~~~~~ta~~~l~~~~~-~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v   99 (258)
                      .|+|+||+++ |++.++++|++++++ +|++++ ++.|||+++ +..+ +++|++|||+|+|++|++++|+|+.+|+.+|
T Consensus       146 ~G~~aey~~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~V  223 (380)
T 1vj0_A          146 RGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENV  223 (380)
T ss_dssp             CSSSBSEEEECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEE
T ss_pred             CccccceEEEcccceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceE
Confidence            5899999999 999999999999999 777777 999999998 6678 9999999999999999999999999994499


Q ss_pred             EEEcCCcchHHHHHhcCCceEEcCC---CCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecc
Q 025101          100 IGVDVISEKFEIGKRFGVTEFVNSK---NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       100 ~~~~~~~~~~~~~~~~g~~~vi~~~---~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      +++++++++.++++++|++.++|++   +   +++.+.+++.+++ ++|+||||+|.+..++.++++++++ |+++.+|.
T Consensus       224 i~~~~~~~~~~~~~~lGa~~vi~~~~~~~---~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~  299 (380)
T 1vj0_A          224 IVIAGSPNRLKLAEEIGADLTLNRRETSV---EERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGV  299 (380)
T ss_dssp             EEEESCHHHHHHHHHTTCSEEEETTTSCH---HHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCC
T ss_pred             EEEcCCHHHHHHHHHcCCcEEEeccccCc---chHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEEec
Confidence            9999999999999999999999987   5   7888899999887 8999999999876699999999999 99999997


Q ss_pred             cCCCCceeechHH-HHhcCceEEecccCCCCCCCcHHHHHHHHHc--CCCCCCcccccccccccHHHHHHHHhcCCeeEE
Q 025101          176 DQPGSQLSLSSFE-VLHSGKILMGSLFGGLKAKSDIPILLKRYMD--KELELDKFVTHEMKFEEINSAFDLLIKGKCLRC  252 (258)
Q Consensus       176 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~  252 (258)
                      .......+++... ++.+++++.|+..+.   .++++++++++++  |++  .++++++|+++++++||+.+++++..|+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~Kv  374 (380)
T 1vj0_A          300 AVPQDPVPFKVYEWLVLKNATFKGIWVSD---TSHFVKTVSITSRNYQLL--SKLITHRLPLKEANKALELMESREALKV  374 (380)
T ss_dssp             CSCCCCEEECHHHHTTTTTCEEEECCCCC---HHHHHHHHHHHHTCHHHH--GGGCCEEEEGGGHHHHHHHHHHTSCSCE
T ss_pred             CCCCCCeeEchHHHHHhCCeEEEEeecCC---HHHHHHHHHHHHhhcCCe--eeEEEEEEeHHHHHHHHHHHhcCCCceE
Confidence            6511245667666 788899999986543   4679999999999  966  5678899999999999999987654499


Q ss_pred             EEeeC
Q 025101          253 VIWMG  257 (258)
Q Consensus       253 vi~~~  257 (258)
                      |++++
T Consensus       375 vl~~~  379 (380)
T 1vj0_A          375 ILYPE  379 (380)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99875

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=7.4e-38  Score=260.56  Aligned_cols=223  Identities=20%  Similarity=0.282  Sum_probs=196.1

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRII  100 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~  100 (258)
                      ..|+|+||+++|++.++++|+++++++|++++.++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|+
T Consensus       117 ~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi  195 (343)
T 2eih_A          117 RHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVI  195 (343)
T ss_dssp             SCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEE
T ss_pred             CCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEE
Confidence            35999999999999999999999999999999999999999876678999999999997 9999999999999999 999


Q ss_pred             EEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          101 GVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       101 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      ++++++++.+.++++|++.++|+++   +++.+.+.+.+++ ++|++||++|. ..++.++++++++ |+++.+|.....
T Consensus       196 ~~~~~~~~~~~~~~~ga~~~~d~~~---~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~  270 (343)
T 2eih_A          196 ATAGSEDKLRRAKALGADETVNYTH---PDWPKEVRRLTGGKGADKVVDHTGA-LYFEGVIKATANG-GRIAIAGASSGY  270 (343)
T ss_dssp             EEESSHHHHHHHHHHTCSEEEETTS---TTHHHHHHHHTTTTCEEEEEESSCS-SSHHHHHHHEEEE-EEEEESSCCCSC
T ss_pred             EEeCCHHHHHHHHhcCCCEEEcCCc---ccHHHHHHHHhCCCCceEEEECCCH-HHHHHHHHhhccC-CEEEEEecCCCC
Confidence            9999999999999999999999887   7888889888876 89999999994 4599999999999 999999976432


Q ss_pred             CceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                       ...++...++.+++++.|+...   ..++++++++++.+|+++  +.++++|+++++++||+.+++++.. |+|+++
T Consensus       271 -~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (343)
T 2eih_A          271 -EGTLPFAHVFYRQLSILGSTMA---SKSRLFPILRFVEEGKLK--PVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV  342 (343)
T ss_dssp             -CCCCCTTHHHHTTCEEEECCSC---CGGGHHHHHHHHHHTSSC--CCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred             -cCccCHHHHHhCCcEEEEecCc---cHHHHHHHHHHHHcCCCC--CceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence             2235556677889999998632   257799999999999764  5688999999999999999888765 999986

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=3.1e-38  Score=262.49  Aligned_cols=244  Identities=16%  Similarity=0.191  Sum_probs=207.6

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |+++..|+  +||+|+++...|+|+||+++|++.++++|+++++++|+++++.+.|||+++.+..++++|++|||+|+ |
T Consensus        78 G~~v~~~~--vGdrV~~~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g  155 (340)
T 3gms_A           78 GAFVSREL--IGKRVLPLRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGS  155 (340)
T ss_dssp             CTTSCGGG--TTCEEEECSSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTS
T ss_pred             CCCCCCCC--CCCEEEecCCCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCcc
Confidence            56778898  99999988788999999999999999999999999999999999999999888999999999999998 5


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAY  160 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~  160 (258)
                      ++|++++|+++..|+ +|+++++++++.++++++|++.++|+++   +++.+.+++.+++ ++|++|||+|.+. ....+
T Consensus       156 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~~~~~~~---~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~  230 (340)
T 3gms_A          156 AIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVIDTST---APLYETVMELTNGIGADAAIDSIGGPD-GNELA  230 (340)
T ss_dssp             HHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESSCHHH-HHHHH
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcEEEeCCc---ccHHHHHHHHhCCCCCcEEEECCCChh-HHHHH
Confidence            999999999999999 9999999999999999999999999988   8999999999988 9999999999988 66777


Q ss_pred             HhhhcCCceEEEecccCCCCceeechHHHH-hcCceEEecccCCC-------CCCCcHHHHHHHHHcCCCCCCccccccc
Q 025101          161 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVL-HSGKILMGSLFGGL-------KAKSDIPILLKRYMDKELELDKFVTHEM  232 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~  232 (258)
                      ++++++ |+++.+|...+. .  ++...+. ...+++..+....+       ...+.++++++++++|++++.. ++++|
T Consensus       231 ~~l~~~-G~iv~~G~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-i~~~~  305 (340)
T 3gms_A          231 FSLRPN-GHFLTIGLLSGI-Q--VNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHSTY  305 (340)
T ss_dssp             HTEEEE-EEEEECCCTTSC-C--CCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC-EEEEE
T ss_pred             HHhcCC-CEEEEEeecCCC-C--CCHHHhhhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCcccc-ccEEE
Confidence            999999 999999976432 2  2333332 23455444332111       1135688999999999888765 67999


Q ss_pred             ccccHHHHHHHHhcCC-e-eEEEEeeCC
Q 025101          233 KFEEINSAFDLLIKGK-C-LRCVIWMGE  258 (258)
Q Consensus       233 ~~~~~~~a~~~~~~~~-~-~k~vi~~~~  258 (258)
                      +++++++||+.+++++ . .|+++++.+
T Consensus       306 ~l~~~~~A~~~~~~~~~~~GKvvl~~~~  333 (340)
T 3gms_A          306 ELADVKAAVDVVQSAEKTKGKVFLTSYE  333 (340)
T ss_dssp             EGGGHHHHHHHHHCTTCCSSEEEEECC-
T ss_pred             eHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            9999999999999987 4 499999864

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=2e-38  Score=264.56  Aligned_cols=244  Identities=17%  Similarity=0.266  Sum_probs=200.1

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |.++..|+  +||+|+++...|+|+||+++|++.++++|+++++++++++++++.|||+++.+..++++|++|||+|+ |
T Consensus        76 G~~v~~~~--~GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G  153 (349)
T 4a27_A           76 GDSVKGYE--IGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGG  153 (349)
T ss_dssp             CTTCCSCC--TTCEEEEECSSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTS
T ss_pred             CCCCCCCC--CCCEEEEecCCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence            56777888  99999998888999999999999999999999999999999999999999888899999999999997 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYA  161 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~  161 (258)
                      ++|++++|+++.+|..+|++++ ++++.+.++ +|+++++| ++   +++.+.+++.+++++|+||||+|++. ++.+++
T Consensus       154 ~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~-~~---~~~~~~~~~~~~~g~Dvv~d~~g~~~-~~~~~~  226 (349)
T 4a27_A          154 GVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLFD-RN---ADYVQEVKRISAEGVDIVLDCLCGDN-TGKGLS  226 (349)
T ss_dssp             HHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEEE-TT---SCHHHHHHHHCTTCEEEEEEECC--------CT
T ss_pred             HHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEEc-CC---ccHHHHHHHhcCCCceEEEECCCchh-HHHHHH
Confidence            9999999999998654888887 678888888 99999999 66   78999999988669999999999987 699999


Q ss_pred             hhhcCCceEEEecccCCCC---------------ceeechHHHHhcCceEEecccCCCC--------CCCcHHHHHHHHH
Q 025101          162 CCRKGWGKTIVLGVDQPGS---------------QLSLSSFEVLHSGKILMGSLFGGLK--------AKSDIPILLKRYM  218 (258)
Q Consensus       162 ~l~~~~G~~v~~g~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~  218 (258)
                      +++++ |+++.+|......               ...++...++.++.++.++....+.        .++.+++++++++
T Consensus       227 ~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~  305 (349)
T 4a27_A          227 LLKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYN  305 (349)
T ss_dssp             TEEEE-EEEEEEC-------------------------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HhhcC-CEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHH
Confidence            99999 9999999643211               1224556677889999987643211        1456889999999


Q ss_pred             cCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          219 DKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       219 ~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      +|++  +++++++|+++++++||+.+++++.. |+|+++++
T Consensus       306 ~g~l--~~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~~~  344 (349)
T 4a27_A          306 QKKI--KPVVDSLWALEEVKEAMQRIHDRGNIGKLILDVEK  344 (349)
T ss_dssp             TTSC--CCCEEEEECGGGHHHHHHHHHTTCCSSEEEEETTC
T ss_pred             CCCc--cccccceECHHHHHHHHHHHHhCCCCceEEEecCC
Confidence            9976  46688999999999999999988877 99999864

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=5.4e-38  Score=270.48  Aligned_cols=244  Identities=17%  Similarity=0.171  Sum_probs=209.2

Q ss_pred             CCCCccccCCCCceeeeec---------------------------cccceeeeEEEecceEEEcCCCCCccchhhcchh
Q 025101            3 RDQTSRFKDLRGETIHHFV---------------------------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG   55 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---------------------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~   55 (258)
                      |+++..|+  +||+|+...                           ..|+|+||+++|++.++++|+++++++|++++++
T Consensus       133 G~~v~~~~--vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~  210 (456)
T 3krt_A          133 GPGVNAWQ--AGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLV  210 (456)
T ss_dssp             CTTCCSCC--TTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHH
T ss_pred             CCCCCCCC--CCCEEEEeCCcccccccccccccccCccccccccCCCCCcccceEEechHHeeECCCCCCHHHHHHhhhH
Confidence            56777887  999998532                           1499999999999999999999999999999999


Q ss_pred             hhhhhhhhhhh--cCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCC----
Q 025101           56 VSTGVGAAWRT--ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD----  128 (258)
Q Consensus        56 ~~ta~~~l~~~--~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~----  128 (258)
                      +.|||+++...  .++++|++|||+|+ |++|++++|+|+..|+ +|++++++++|.++++++|++.++|+.+.+.    
T Consensus       211 ~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~  289 (456)
T 3krt_A          211 NSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWK  289 (456)
T ss_dssp             HHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEE
T ss_pred             HHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccc
Confidence            99999998654  78999999999997 9999999999999999 8999999999999999999999999887211    


Q ss_pred             ----------ccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEE
Q 025101          129 ----------KSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  197 (258)
Q Consensus       129 ----------~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  197 (258)
                                +++.+.+++++++ ++|+||||+|+.. +..++++++++ |+++.+|...+ ....++...++.+++++.
T Consensus       290 ~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~  366 (456)
T 3krt_A          290 DENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRET-FGASVFVTRKG-GTITTCASTSG-YMHEYDNRYLWMSLKRII  366 (456)
T ss_dssp             ETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHHH-HHHHHHHEEEE-EEEEESCCTTC-SEEEEEHHHHHHTTCEEE
T ss_pred             cccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCchh-HHHHHHHhhCC-cEEEEEecCCC-cccccCHHHHHhcCeEEE
Confidence                      1234788888887 9999999999954 99999999999 99999997653 345566677788899999


Q ss_pred             ecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          198 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      |+..+.   ..++.++++++++|+++  +.++++|+++++++|++.+.+++.. |+||.+.
T Consensus       367 g~~~~~---~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~eA~~~l~~~~~~GKvvv~~~  422 (456)
T 3krt_A          367 GSHFAN---YREAWEANRLIAKGRIH--PTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLCL  422 (456)
T ss_dssp             ECCSCC---HHHHHHHHHHHHTTSSC--CCEEEEEEGGGHHHHHHHHHTTCSSSEEEEESS
T ss_pred             EeccCC---HHHHHHHHHHHHcCCcc--cceeEEEcHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            987544   35677899999999765  5688999999999999999988877 9988764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=7.6e-38  Score=265.73  Aligned_cols=223  Identities=17%  Similarity=0.262  Sum_probs=195.3

Q ss_pred             cccceeeeEEEecceEEEcCCCCCc------cchhhcchhhhhhhhhhhhh-cCCCCCCEEEEEccCHHHHHHHHHHHHc
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPP------NRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLC   94 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~------~~aa~~~~~~~ta~~~l~~~-~~~~~g~~vlI~G~g~~G~~a~~l~~~~   94 (258)
                      ..|+|+||+++|++.++++|++++.      .++++++.++.|||+++... .++++|++|||+|+|++|++++|+|+.+
T Consensus       157 ~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~  236 (404)
T 3ip1_A          157 VDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHA  236 (404)
T ss_dssp             BCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred             CCCCCcceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHc
Confidence            4699999999999999999998763      45888888999999998654 4899999999999999999999999999


Q ss_pred             CCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCCh-hhHHHHHHhh----hcCCc
Q 025101           95 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA-SLVQEAYACC----RKGWG  168 (258)
Q Consensus        95 g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~-~~~~~~~~~l----~~~~G  168 (258)
                      |+.+|++++++++|.++++++|++.++|+++   +++.+.+++.+++ ++|+||||+|++ ..+..+.+.+    +++ |
T Consensus       237 Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~-G  312 (404)
T 3ip1_A          237 GASKVILSEPSEVRRNLAKELGADHVIDPTK---ENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGIN-A  312 (404)
T ss_dssp             TCSEEEEECSCHHHHHHHHHHTCSEEECTTT---SCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCC-C
T ss_pred             CCCEEEEECCCHHHHHHHHHcCCCEEEcCCC---CCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCC-c
Confidence            9988999999999999999999999999988   8999999999988 999999999998 3477777777    999 9


Q ss_pred             eEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCC
Q 025101          169 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  248 (258)
Q Consensus       169 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~  248 (258)
                      +++.+|...+  ..+++...++.+++++.|+....  ..++++++++++++| +++.++++++|+++++++||+.+..+ 
T Consensus       313 ~iv~~G~~~~--~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~~G-  386 (404)
T 3ip1_A          313 TVAIVARADA--KIPLTGEVFQVRRAQIVGSQGHS--GHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQTD-  386 (404)
T ss_dssp             EEEECSCCCS--CEEECHHHHHHTTCEEEECCCCC--STTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTTTC-
T ss_pred             EEEEeCCCCC--CCcccHHHHhccceEEEEecCCC--chHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHhCC-
Confidence            9999997654  45677778888999999986332  246799999999999 99989999999999999999999844 


Q ss_pred             eeEEEEee
Q 025101          249 CLRCVIWM  256 (258)
Q Consensus       249 ~~k~vi~~  256 (258)
                        |+|+++
T Consensus       387 --Kvvl~~  392 (404)
T 3ip1_A          387 --KSLVKV  392 (404)
T ss_dssp             --TTCSCE
T ss_pred             --cEEEec
Confidence              555554

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=9.7e-38  Score=258.01  Aligned_cols=243  Identities=19%  Similarity=0.232  Sum_probs=208.3

Q ss_pred             CCCCccccCCCCceeeeec-cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEc-c
Q 025101            3 RDQTSRFKDLRGETIHHFV-SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-L   80 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G-~   80 (258)
                      |+++..|+  +||+|+... ..|+|+||+++|++.++++|+++++++|+++++.+.|||+++.+..++++|++|||+| +
T Consensus        73 G~~v~~~~--~GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~  150 (325)
T 3jyn_A           73 GDEVTRFK--VGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAA  150 (325)
T ss_dssp             CTTCCSCC--TTCEEEESSSSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTT
T ss_pred             CCCCCCCC--CCCEEEEecCCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            56778888  999999654 4699999999999999999999999999999999999999988888999999999999 5


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHH
Q 025101           81 GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEA  159 (258)
Q Consensus        81 g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~  159 (258)
                      |++|++++|+++..|+ +|+++++++++.++++++|++.++|+++   +++.+.+++.+++ ++|++|||+|... +..+
T Consensus       151 g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~  225 (325)
T 3jyn_A          151 GGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYSH---EDVAKRVLELTDGKKCPVVYDGVGQDT-WLTS  225 (325)
T ss_dssp             SHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTCCEEEEEESSCGGG-HHHH
T ss_pred             cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHhCCCCceEEEECCChHH-HHHH
Confidence            9999999999999999 9999999999999999999999999988   8999999999987 9999999999865 9999


Q ss_pred             HHhhhcCCceEEEecccCCCCceeechHHHHhc-CceEEecccCCCC-CCCc----HHHHHHHHHcCCCCCCcccccccc
Q 025101          160 YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS-GKILMGSLFGGLK-AKSD----IPILLKRYMDKELELDKFVTHEMK  233 (258)
Q Consensus       160 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~----~~~~~~~~~~g~~~~~~~~~~~~~  233 (258)
                      +++++++ |+++.+|...+. ...++...+..+ .+++.+...+.+. .+++    ++++++++.+|++++.  ++++|+
T Consensus       226 ~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~  301 (325)
T 3jyn_A          226 LDSVAPR-GLVVSFGNASGP-VSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVD--GIEQYA  301 (325)
T ss_dssp             HTTEEEE-EEEEECCCTTCC-CCSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSCCC--CCEEEE
T ss_pred             HHHhcCC-CEEEEEecCCCC-CCCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCeeCc--cccEEc
Confidence            9999999 999999976542 224555566665 5666554322111 1233    4588999999987765  789999


Q ss_pred             cccHHHHHHHHhcCCee-EEEEee
Q 025101          234 FEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       234 ~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ++++++||+.+++++.. |+|+.+
T Consensus       302 l~~~~~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          302 LKDAAKAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             GGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred             HHHHHHHHHHHHcCCCCceEEEeC
Confidence            99999999999999887 999874

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=1.4e-37  Score=259.03  Aligned_cols=242  Identities=16%  Similarity=0.173  Sum_probs=204.6

Q ss_pred             CCCCccccCCCCceeeeec---cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCC------CCC
Q 025101            3 RDQTSRFKDLRGETIHHFV---SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE------VGS   73 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~------~g~   73 (258)
                      |+++..|+  +||+|++..   ..|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..+++      +|+
T Consensus        75 G~~v~~~~--~GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~  152 (346)
T 3fbg_A           75 GNEVTMFN--QGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGK  152 (346)
T ss_dssp             CTTCCSCC--TTCEEEECCCTTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTC
T ss_pred             CCCCCcCC--CCCEEEEcCCCCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCC
Confidence            56778888  999999653   3699999999999999999999999999999999999999988888888      999


Q ss_pred             EEEEEc-cCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G-~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +|||+| +|++|++++|+++..|+ +|+++++++++.++++++|++.++|+++    ++.+.+++..++++|+||||+|+
T Consensus       153 ~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~----~~~~~~~~~~~~g~Dvv~d~~g~  227 (346)
T 3fbg_A          153 TLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGADIVLNHKE----SLLNQFKTQGIELVDYVFCTFNT  227 (346)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHHTCSEEECTTS----CHHHHHHHHTCCCEEEEEESSCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEECCc----cHHHHHHHhCCCCccEEEECCCc
Confidence            999995 69999999999999999 9999999999999999999999999865    68888888843389999999999


Q ss_pred             hhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC---C------CCCcHHHHHHHHHcCCCC
Q 025101          153 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL---K------AKSDIPILLKRYMDKELE  223 (258)
Q Consensus       153 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~g~~~  223 (258)
                      +..++.++++++++ |+++.++..    ..+++...+..+++++.++.....   .      ..+.++++++++++|+++
T Consensus       228 ~~~~~~~~~~l~~~-G~iv~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~  302 (346)
T 3fbg_A          228 DMYYDDMIQLVKPR-GHIATIVAF----ENDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQ  302 (346)
T ss_dssp             HHHHHHHHHHEEEE-EEEEESSCC----SSCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHhccC-CEEEEECCC----CCCCccccccccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEE
Confidence            88789999999999 999988743    223455566778999988653321   0      024578899999999765


Q ss_pred             CCccccccc---ccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          224 LDKFVTHEM---KFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       224 ~~~~~~~~~---~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                        +.++++|   +++++++||+.+++++.. |+|+++++
T Consensus       303 --~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~  339 (346)
T 3fbg_A          303 --PTTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNE  339 (346)
T ss_dssp             --CCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC--
T ss_pred             --CCccceecCCCHHHHHHHHHHHhcCCcceEEEEecCC
Confidence              4566776   999999999999999887 99999864

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=1.6e-37  Score=257.64  Aligned_cols=245  Identities=18%  Similarity=0.267  Sum_probs=210.2

Q ss_pred             CCCCccccCCCCceeeeecc-ccceeeeEEEecceEEEcCCCCCccc--hhhcchhhhhhhhhhhhhcCCCCCCEEEEEc
Q 025101            3 RDQTSRFKDLRGETIHHFVS-VSSFSEYTVLDIAHVVKVDPTVPPNR--ACLLSCGVSTGVGAAWRTANVEVGSTVVIFG   79 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~-~g~~~~~~~v~~~~~~~~p~~~~~~~--aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G   79 (258)
                      |+++..|+  +||+|+.... .|+|+||+++|++.++++|+++++++  |++++.++.|||+++.+..++++|++|||+|
T Consensus        76 G~~v~~~~--~GdrV~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~G  153 (333)
T 1wly_A           76 GPGVTDFT--VGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHA  153 (333)
T ss_dssp             CTTCCSCC--TTCEEEECSSSCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETT
T ss_pred             CCCCCCCC--CCCEEEEecCCCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEEC
Confidence            56778888  9999986543 69999999999999999999999999  9999999999999987788999999999999


Q ss_pred             c-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHH
Q 025101           80 L-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQ  157 (258)
Q Consensus        80 ~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~  157 (258)
                      + |++|++++|+++..|+ +|+++++++++.+.++++|++.++|+++   +++.+.+.+.+++ ++|++|||+|... ++
T Consensus       154 a~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~~~i~~~~~~~~~d~vi~~~g~~~-~~  228 (333)
T 1wly_A          154 AAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHHTINYST---QDFAEVVREITGGKGVDVVYDSIGKDT-LQ  228 (333)
T ss_dssp             TTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHHTTCCEEEEEECSCTTT-HH
T ss_pred             CccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC---HHHHHHHHHHhCCCCCeEEEECCcHHH-HH
Confidence            6 9999999999999999 9999999999999999999999999887   7888889888766 8999999999954 99


Q ss_pred             HHHHhhhcCCceEEEecccCCCCceeechH-HHHhcC--ceEEecccCCCCC----CCcHHHHHHHHHcCCCCCCccccc
Q 025101          158 EAYACCRKGWGKTIVLGVDQPGSQLSLSSF-EVLHSG--KILMGSLFGGLKA----KSDIPILLKRYMDKELELDKFVTH  230 (258)
Q Consensus       158 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~  230 (258)
                      .++++++++ |+++.+|...+ ....++.. .++.|+  +++.|+.......    .+.++++++++.+|+++  +.+++
T Consensus       229 ~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~  304 (333)
T 1wly_A          229 KSLDCLRPR-GMCAAYGHASG-VADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLH--SSVAK  304 (333)
T ss_dssp             HHHHTEEEE-EEEEECCCTTC-CCCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCC--CCEEE
T ss_pred             HHHHhhccC-CEEEEEecCCC-CcCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCcC--CCcce
Confidence            999999999 99999997643 22345555 667788  8988875421111    23588999999999765  56889


Q ss_pred             ccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          231 EMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       231 ~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      +|+++++++||+.+++++.. |+|+++++
T Consensus       305 ~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  333 (333)
T 1wly_A          305 TFPLREAAAAHKYMGGRQTIGSIVLLPQA  333 (333)
T ss_dssp             EEEGGGHHHHHHHHHHCSCCSEEEEETTC
T ss_pred             EEeHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence            99999999999999887766 99999875

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=2.8e-37  Score=256.48  Aligned_cols=239  Identities=18%  Similarity=0.213  Sum_probs=206.2

Q ss_pred             CCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccch--hhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            5 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA--CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         5 ~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a--a~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      ++..|+  +||+|++   .|+|+||+++|++.++++|+++++.++  +++++++.|||+++.+..++++|++|||+|+ |
T Consensus        86 ~v~~~~--vGdrV~~---~G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g  160 (336)
T 4b7c_A           86 KHPGFQ--AGDYVNG---ALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAG  160 (336)
T ss_dssp             CSTTCC--TTCEEEE---ECCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTS
T ss_pred             CCCCCC--CCCEEec---cCCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence            567787  9999996   488999999999999999999987776  7889999999999888999999999999997 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAY  160 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~  160 (258)
                      ++|++++|+++..|+ +|+++++++++.+.+ +++|++.++|+++   +++.+.+.+.+++++|++|||+|.+. +..++
T Consensus       161 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~  235 (336)
T 4b7c_A          161 AVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGFDGAIDYKN---EDLAAGLKRECPKGIDVFFDNVGGEI-LDTVL  235 (336)
T ss_dssp             HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCSEEEETTT---SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHH
T ss_pred             HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCEEEECCC---HHHHHHHHHhcCCCceEEEECCCcch-HHHHH
Confidence            999999999999999 999999999999999 8999999999988   88999999988669999999999865 99999


Q ss_pred             HhhhcCCceEEEecccCCC-----CceeechHHHHhcCceEEecccCCCC--CCCcHHHHHHHHHcCCCCCCcccccccc
Q 025101          161 ACCRKGWGKTIVLGVDQPG-----SQLSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMK  233 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~  233 (258)
                      ++++++ |+++.+|.....     ....++...++.+++++.++....+.  ..+.++++++++++|++++...  .+++
T Consensus       236 ~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~--~~~~  312 (336)
T 4b7c_A          236 TRIAFK-ARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSRED--IVEG  312 (336)
T ss_dssp             TTEEEE-EEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEE--EEEC
T ss_pred             HHHhhC-CEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCccccee--eecC
Confidence            999999 999999965421     11244556678899999998755431  1256889999999998777644  4579


Q ss_pred             cccHHHHHHHHhcCCee-EEEEee
Q 025101          234 FEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       234 ~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ++++++||+.+++++.. |+|+++
T Consensus       313 l~~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          313 LETFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             GGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCCceEEEeC
Confidence            99999999999998877 999975

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=1.9e-38  Score=265.64  Aligned_cols=218  Identities=20%  Similarity=0.242  Sum_probs=188.9

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      ..|+|+||+++|++.++++|+++++++|+++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|++
T Consensus       131 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~  208 (360)
T 1piw_A          131 SQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYV  208 (360)
T ss_dssp             CCCSSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEE
T ss_pred             CCCcceeEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEE
Confidence            35899999999999999999999999999999999999999854 889999999999999999999999999999 8999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCc-cHHHHHHHhcCCCCCEEEEecCC--hhhHHHHHHhhhcCCceEEEecccCC
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDK-SVSQIIIDMTDGGADYCFECVGL--ASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~-~~~~~i~~~~~~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      +++++++.++++++|+++++|+++   + ++.+.+.    +++|+|||++|.  +..++.++++++++ |+++.+|....
T Consensus       209 ~~~~~~~~~~~~~lGa~~v~~~~~---~~~~~~~~~----~~~D~vid~~g~~~~~~~~~~~~~l~~~-G~iv~~g~~~~  280 (360)
T 1piw_A          209 ISRSSRKREDAMKMGADHYIATLE---EGDWGEKYF----DTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ  280 (360)
T ss_dssp             EESSSTTHHHHHHHTCSEEEEGGG---TSCHHHHSC----SCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS
T ss_pred             EcCCHHHHHHHHHcCCCEEEcCcC---chHHHHHhh----cCCCEEEECCCCCcHHHHHHHHHHhcCC-CEEEEecCCCC
Confidence            999999999999999999999877   5 6655443    479999999998  55588999999999 99999997543


Q ss_pred             CCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCccccccccccc--HHHHHHHHhcCCee-EEEEe
Q 025101          179 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE--INSAFDLLIKGKCL-RCVIW  255 (258)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~-k~vi~  255 (258)
                       . ..++...++.+++++.++..+.   .++++++++++.+|++++.  + ++|++++  +++||+.+++++.. |+|++
T Consensus       281 -~-~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~  352 (360)
T 1piw_A          281 -H-EMLSLKPYGLKAVSISYSALGS---IKELNQLLKLVSEKDIKIW--V-ETLPVGEAGVHEAFERMEKGDVRYRFTLV  352 (360)
T ss_dssp             -S-CCEEECGGGCBSCEEEECCCCC---HHHHHHHHHHHHHTTCCCC--E-EEEESSHHHHHHHHHHHHHTCCSSEEEEE
T ss_pred             -c-cccCHHHHHhCCeEEEEEecCC---HHHHHHHHHHHHhCCCcce--E-EEEeccHhHHHHHHHHHHCCCCceEEEEe
Confidence             1 1344455778899999986433   4679999999999976544  6 8999999  99999999888766 99998


Q ss_pred             eC
Q 025101          256 MG  257 (258)
Q Consensus       256 ~~  257 (258)
                      ++
T Consensus       353 ~~  354 (360)
T 1piw_A          353 GY  354 (360)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=2.6e-37  Score=265.81  Aligned_cols=244  Identities=14%  Similarity=0.196  Sum_probs=207.6

Q ss_pred             CCCCccccCCCCceeeeecc---------------------------ccceeeeEEEecceEEEcCCCCCccchhhcchh
Q 025101            3 RDQTSRFKDLRGETIHHFVS---------------------------VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG   55 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~---------------------------~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~   55 (258)
                      |.++..|+  +||+|+....                           .|+|+||+++|++.++++|+++++++|++++++
T Consensus       125 G~~V~~~~--vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~  202 (447)
T 4a0s_A          125 GIGVRRWK--PGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLC  202 (447)
T ss_dssp             CTTCCSCC--TTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHH
T ss_pred             CCCCCCCC--CCCEEEEecCcCcCcccccccccccccccccccccCCCCceeeeeecCHHHcEECCCCCCHHHHHHhHHH
Confidence            56777888  9999985431                           499999999999999999999999999999999


Q ss_pred             hhhhhhhhhh--hcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCC----
Q 025101           56 VSTGVGAAWR--TANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD----  128 (258)
Q Consensus        56 ~~ta~~~l~~--~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~----  128 (258)
                      +.|||+++..  ..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.++++++|++.++|+.+.+.    
T Consensus       203 ~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~  281 (447)
T 4a0s_A          203 AGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDI  281 (447)
T ss_dssp             HHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTG
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecccccccccc
Confidence            9999999864  488999999999997 9999999999999999 8999999999999999999999998765110    


Q ss_pred             -----------ccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEE
Q 025101          129 -----------KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  197 (258)
Q Consensus       129 -----------~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  197 (258)
                                 ..+.+.+++.+++++|+|||++|... ++.++++++++ |+++.+|...+ ....++...++.+++++.
T Consensus       282 ~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~  358 (447)
T 4a0s_A          282 ADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVT-FGLSVIVARRG-GTVVTCGSSSG-YLHTFDNRYLWMKLKKIV  358 (447)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHHH-HHHHHHHSCTT-CEEEESCCTTC-SEEEEEHHHHHHTTCEEE
T ss_pred             cccccccchhhhHHHHHHHHHhCCCceEEEECCCchH-HHHHHHHHhcC-CEEEEEecCCC-cccccCHHHHHhCCCEEE
Confidence                       01367788888449999999999865 99999999999 99999996643 345566677788899999


Q ss_pred             ecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          198 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      |+....   .+++.++++++++|+++  ++++++|+++++++||+.+.+++.. |++|.+.
T Consensus       359 g~~~~~---~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~GKvvv~~~  414 (447)
T 4a0s_A          359 GSHGAN---HEEQQATNRLFESGAVV--PAMSAVYPLAEAAEACRVVQTSRQVGKVAVLCM  414 (447)
T ss_dssp             ECCSCC---HHHHHHHHHHHHTTSSC--CCEEEEEEGGGHHHHHHHHHTTCCSSEEEEESS
T ss_pred             ecCCCC---HHHHHHHHHHHHcCCcc--cceeEEEcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            986544   35688999999999764  5688999999999999999988877 9988864

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=3.9e-37  Score=256.09  Aligned_cols=237  Identities=15%  Similarity=0.192  Sum_probs=204.2

Q ss_pred             CCCCccccCCCCceeeeec-----cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEE
Q 025101            3 RDQTSRFKDLRGETIHHFV-----SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI   77 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~-----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI   77 (258)
                      |+++..|+  +||+|+++.     ..|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||
T Consensus        79 G~~v~~~~--vGdrV~~~~~g~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  156 (343)
T 3gaz_A           79 GPEVDSFR--VGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLI  156 (343)
T ss_dssp             CTTCCSCC--TTCEEEEECCSSTTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred             CCCCCCCC--CCCEEEEEeCCCCCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEE
Confidence            56778888  999999764     25999999999999999999999999999999999999999878899999999999


Q ss_pred             Ec-cCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhh
Q 025101           78 FG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL  155 (258)
Q Consensus        78 ~G-~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~  155 (258)
                      +| +|++|++++|+++..|+ +|+++ +++++.++++++|++. +| ++   +++.+.+++.+++ ++|+||||+|++. 
T Consensus       157 ~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~-i~-~~---~~~~~~~~~~~~~~g~D~vid~~g~~~-  228 (343)
T 3gaz_A          157 QGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP-ID-AS---REPEDYAAEHTAGQGFDLVYDTLGGPV-  228 (343)
T ss_dssp             ETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE-EE-TT---SCHHHHHHHHHTTSCEEEEEESSCTHH-
T ss_pred             ecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE-ec-cC---CCHHHHHHHHhcCCCceEEEECCCcHH-
Confidence            99 59999999999999999 89999 8999999999999988 77 55   7889999999887 9999999999865 


Q ss_pred             HHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC--------CCCCcHHHHHHHHHcCCCCCCcc
Q 025101          156 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL--------KAKSDIPILLKRYMDKELELDKF  227 (258)
Q Consensus       156 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~  227 (258)
                      ++.++++++++ |+++.+|...     .++...+..+++++.++.....        ...+.++++++++++|+++  +.
T Consensus       229 ~~~~~~~l~~~-G~iv~~g~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~  300 (343)
T 3gaz_A          229 LDASFSAVKRF-GHVVSCLGWG-----THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLA--PR  300 (343)
T ss_dssp             HHHHHHHEEEE-EEEEESCCCS-----CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCC--CC
T ss_pred             HHHHHHHHhcC-CeEEEEcccC-----ccccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHHHCCCcc--cC
Confidence            99999999999 9999998653     2344566778999998753211        0125688999999999765  56


Q ss_pred             cc-cccccccHHHHHHHHhcCCe----e-EEEEeeC
Q 025101          228 VT-HEMKFEEINSAFDLLIKGKC----L-RCVIWMG  257 (258)
Q Consensus       228 ~~-~~~~~~~~~~a~~~~~~~~~----~-k~vi~~~  257 (258)
                      ++ ++|+++++++||+.+++++.    . |++++++
T Consensus       301 i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~  336 (343)
T 3gaz_A          301 LDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVE  336 (343)
T ss_dssp             BCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC
T ss_pred             ccCcEecHHHHHHHHHHHHcCCCcccccceEEEEec
Confidence            77 79999999999999988654    4 9999875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=253.68  Aligned_cols=225  Identities=20%  Similarity=0.301  Sum_probs=196.0

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRII  100 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~  100 (258)
                      ..|+|+||+++|++.++++|+++++++|+++++++.|||+++. ..++++|++|||+|+ |++|++++|+++..|+ +|+
T Consensus       121 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~  198 (347)
T 2hcy_A          121 HDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALK-SANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVL  198 (347)
T ss_dssp             BCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHHHHHHH-TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEE
T ss_pred             CCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEE
Confidence            3589999999999999999999999999999999999999974 458999999999998 8999999999999999 999


Q ss_pred             EEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCC
Q 025101          101 GVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  180 (258)
Q Consensus       101 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  180 (258)
                      ++++++++.+.++++|++.++|..+  .+++.+.+++.+++++|++||++|....++.+++.++++ |+++.+|...+ .
T Consensus       199 ~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~  274 (347)
T 2hcy_A          199 GIDGGEGKEELFRSIGGEVFIDFTK--EKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPAG-A  274 (347)
T ss_dssp             EEECSTTHHHHHHHTTCCEEEETTT--CSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEE-EEEEECCCCTT-C
T ss_pred             EEcCCHHHHHHHHHcCCceEEecCc--cHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEeCCCC-C
Confidence            9999999999999999998888773  167888888877558999999999876699999999999 99999997643 3


Q ss_pred             ceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          181 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      ..+++...++.+++++.|+....   .++++++++++.+|++++.   +++|+++++++||+.+++++.. |+|+++++
T Consensus       275 ~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  347 (347)
T 2hcy_A          275 KCCSDVFNQVVKSISIVGSYVGN---RADTREALDFFARGLVKSP---IKVVGLSTLPEIYEKMEKGQIVGRYVVDTSK  347 (347)
T ss_dssp             EEEEEHHHHHHTTCEEEECCCCC---HHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEESCC
T ss_pred             CCCCCHHHHhhCCcEEEEccCCC---HHHHHHHHHHHHhCCCccc---eEEEcHHHHHHHHHHHHcCCcceeEEEecCC
Confidence            45677777888999999986433   4679999999999977653   4799999999999999988765 99998864

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.1e-37  Score=255.10  Aligned_cols=240  Identities=19%  Similarity=0.289  Sum_probs=204.1

Q ss_pred             CCCCccccCCCCceeeeecc-ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-
Q 025101            3 RDQTSRFKDLRGETIHHFVS-VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-   80 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~-~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-   80 (258)
                      |+++..|+  +||+|++... .|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+ 
T Consensus       103 G~~v~~~~--vGdrV~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~Gas  180 (351)
T 1yb5_A          103 GDNASAFK--KGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGAS  180 (351)
T ss_dssp             CTTCTTCC--TTCEEEESCCSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCS
T ss_pred             CCCCCCCC--CCCEEEEeCCCCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCC
Confidence            56778888  9999997643 5999999999999999999999999999999999999999877889999999999997 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHH
Q 025101           81 GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEA  159 (258)
Q Consensus        81 g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~  159 (258)
                      |++|++++|+++..|+ +|+++++++++.+.++++|++.++|+.+   +++.+.+.+.+++ ++|++|||+|.+. +..+
T Consensus       181 ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~---~~~~~~~~~~~~~~~~D~vi~~~G~~~-~~~~  255 (351)
T 1yb5_A          181 GGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHRE---VNYIDKIKKYVGEKGIDIIIEMLANVN-LSKD  255 (351)
T ss_dssp             SHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS---TTHHHHHHHHHCTTCEEEEEESCHHHH-HHHH
T ss_pred             ChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCCEEEeCCC---chHHHHHHHHcCCCCcEEEEECCChHH-HHHH
Confidence            9999999999999999 9999999999999999999999999988   7888899888877 8999999999875 8999


Q ss_pred             HHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHH----HHHHHHHcCCCCCCcccccccccc
Q 025101          160 YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIP----ILLKRYMDKELELDKFVTHEMKFE  235 (258)
Q Consensus       160 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~  235 (258)
                      +++++++ |+++.+|...   ...++...++.+++++.++...... .++++    .+.+++.+|.+  .++++++|+++
T Consensus       256 ~~~l~~~-G~iv~~g~~~---~~~~~~~~~~~~~~~i~g~~~~~~~-~~~~~~~~~~l~~~~~~g~l--~~~i~~~~~l~  328 (351)
T 1yb5_A          256 LSLLSHG-GRVIVVGSRG---TIEINPRDTMAKESSIIGVTLFSST-KEEFQQYAAALQAGMEIGWL--KPVIGSQYPLE  328 (351)
T ss_dssp             HHHEEEE-EEEEECCCCS---CEEECTHHHHTTTCEEEECCGGGCC-HHHHHHHHHHHHHHHHHTCC--CCCEEEEEEGG
T ss_pred             HHhccCC-CEEEEEecCC---CCccCHHHHHhCCcEEEEEEeecCC-HHHHHHHHHHHHHHHHCCCc--cCccceEEcHH
Confidence            9999999 9999999532   3456666778889999998543211 23343    45556778854  46688999999


Q ss_pred             cHHHHHHH-HhcCCee-EEEEee
Q 025101          236 EINSAFDL-LIKGKCL-RCVIWM  256 (258)
Q Consensus       236 ~~~~a~~~-~~~~~~~-k~vi~~  256 (258)
                      ++++|++. +++++.. |+|+++
T Consensus       329 ~~~~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          329 KVAEAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             GHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             HHHHHHHHHHHhCCCCeEEEEeC
Confidence            99999998 6655545 999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.1e-37  Score=259.89  Aligned_cols=219  Identities=19%  Similarity=0.300  Sum_probs=185.8

Q ss_pred             ccceeeeEEEecceEEEcCCC-CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPT-VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~-~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      .|+|+||+++|++.++++|++ +++++|+++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|++
T Consensus       146 ~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~  223 (369)
T 1uuf_A          146 LGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVA  223 (369)
T ss_dssp             CCSSBSEEEEEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEE
T ss_pred             CCcccceEEEcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEE
Confidence            489999999999999999999 9999999999999999999754 689999999999999999999999999999 7999


Q ss_pred             EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCc
Q 025101          102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  181 (258)
Q Consensus       102 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  181 (258)
                      +++++++.++++++|++.++|+++   +++.+   +.. +++|+|||++|.+..++.++++++++ |+++.+|..... .
T Consensus       224 ~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~---~~~-~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~-~  294 (369)
T 1uuf_A          224 FTTSEAKREAAKALGADEVVNSRN---ADEMA---AHL-KSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATP-H  294 (369)
T ss_dssp             EESSGGGHHHHHHHTCSEEEETTC---HHHHH---TTT-TCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC-----
T ss_pred             EeCCHHHHHHHHHcCCcEEecccc---HHHHH---Hhh-cCCCEEEECCCCHHHHHHHHHHhccC-CEEEEeccCCCC-c
Confidence            999999999999999999999877   55433   332 47999999999876689999999999 999999975432 1


Q ss_pred             eeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          182 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      ..++...++.+++++.|+..+.   .++++++++++++|++++.  + ++|+++++++||+.+++++.. |+|+++++
T Consensus       295 ~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  366 (369)
T 1uuf_A          295 KSPEVFNLIMKRRAIAGSMIGG---IPETQEMLDFCAEHGIVAD--I-EMIRADQINEAYERMLRGDVKYRFVIDNRT  366 (369)
T ss_dssp             ---CHHHHHTTTCEEEECCSCC---HHHHHHHHHHHHHHTCCCC--E-EEECGGGHHHHHHHHHTTCSSSEEEEEGGG
T ss_pred             cccCHHHHHhCCcEEEEeecCC---HHHHHHHHHHHHhCCCCcc--e-EEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            1455666788899999986443   4678999999999977643  5 679999999999999988765 99998753

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.2e-37  Score=262.56  Aligned_cols=226  Identities=20%  Similarity=0.211  Sum_probs=192.0

Q ss_pred             ccceeeeEEEecc--eEEEcCCCCCccc----hhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 025101           23 VSSFSEYTVLDIA--HVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA   96 (258)
Q Consensus        23 ~g~~~~~~~v~~~--~~~~~p~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~   96 (258)
                      .|+|+||+++|++  .++++|+++++++    ++++++++.|||+++. ..++++|++|||+|+|++|++++|+||.+|+
T Consensus       132 ~G~~aey~~v~~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga  210 (398)
T 1kol_A          132 TGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGAGPVGLAAAASARLLGA  210 (398)
T ss_dssp             CCCSBSEEEESSHHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CceeeeEEEecchhCeEEECCCCcchhhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            4899999999987  8999999999888    7888889999999984 7899999999999999999999999999999


Q ss_pred             CeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc-HHHHHHHhcCC-CCCEEEEecCCh---------------hhHHHH
Q 025101           97 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS-VSQIIIDMTDG-GADYCFECVGLA---------------SLVQEA  159 (258)
Q Consensus        97 ~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~-~~~~i~~~~~~-~~d~v~d~~g~~---------------~~~~~~  159 (258)
                      ++|++++++++|.++++++|++ ++|+++   ++ +.+.+++.+++ ++|+|||++|.+               .+++.+
T Consensus       211 ~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~---~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~  286 (398)
T 1kol_A          211 AVVIVGDLNPARLAHAKAQGFE-IADLSL---DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSL  286 (398)
T ss_dssp             SEEEEEESCHHHHHHHHHTTCE-EEETTS---SSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHH
T ss_pred             CeEEEEcCCHHHHHHHHHcCCc-EEccCC---cchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHH
Confidence            7799999999999999999997 788876   44 78899998887 899999999976               258999


Q ss_pred             HHhhhcCCceEEEecccC-CC----------CceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC-CCcc
Q 025101          160 YACCRKGWGKTIVLGVDQ-PG----------SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE-LDKF  227 (258)
Q Consensus       160 ~~~l~~~~G~~v~~g~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~  227 (258)
                      +++++++ |+++.+|... +.          ....++...++.+++++.+....   ..+.++++++++.+|+++ .+++
T Consensus       287 ~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~l~~~g~l~~~~~~  362 (398)
T 1kol_A          287 MQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTP---VMKYNRALMQAIMWDRINIAEVV  362 (398)
T ss_dssp             HHHEEEE-EEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSCC---HHHHHHHHHHHHHTTSCCHHHHH
T ss_pred             HHHHhcC-CEEEEeccccCCcccccccccccccccccHHHHhhcccEEEecccC---hHHHHHHHHHHHHcCCCCCccce
Confidence            9999999 9999999652 11          12345556678889999876421   235678899999999877 3456


Q ss_pred             cccccccccHHHHHHHHhcCCeeEEEEeeC
Q 025101          228 VTHEMKFEEINSAFDLLIKGKCLRCVIWMG  257 (258)
Q Consensus       228 ~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~  257 (258)
                      ++++|+++++++||+.+.+++..|+|++++
T Consensus       363 i~~~~~l~~~~~A~~~~~~~~~gKvvi~~~  392 (398)
T 1kol_A          363 GVQVISLDDAPRGYGEFDAGVPKKFVIDPH  392 (398)
T ss_dssp             TEEEECGGGHHHHHHHHHHTCSCEEEECTT
T ss_pred             eEEEEcHHHHHHHHHHHhCCCceEEEEEeC
Confidence            789999999999999998876679999875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=3.5e-37  Score=256.96  Aligned_cols=213  Identities=21%  Similarity=0.288  Sum_probs=185.1

Q ss_pred             cceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEc
Q 025101           24 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  103 (258)
Q Consensus        24 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~  103 (258)
                      |+|+||+++|++.++++|+++++++|+++++++.|||+++. ..++++|++|||+|+|++|++++|+|+.+|+ +|++++
T Consensus       130 G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~  207 (348)
T 3two_A          130 GGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLK-FSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFA  207 (348)
T ss_dssp             CSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             ccccceEEechhhEEECCCCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEe
Confidence            99999999999999999999999999999999999999974 5699999999999999999999999999999 999999


Q ss_pred             CCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCcee
Q 025101          104 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS  183 (258)
Q Consensus       104 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~  183 (258)
                      +++++.++++++|++.++ .+.   +.+        ..++|+|||++|++..++.++++++++ |+++.+|.... ....
T Consensus       208 ~~~~~~~~~~~lGa~~v~-~~~---~~~--------~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~  273 (348)
T 3two_A          208 RNEHKKQDALSMGVKHFY-TDP---KQC--------KEELDFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPV-EVAP  273 (348)
T ss_dssp             SSSTTHHHHHHTTCSEEE-SSG---GGC--------CSCEEEEEECCCSCCCHHHHHTTEEEE-EEEEECCCCCG-GGCC
T ss_pred             CCHHHHHHHHhcCCCeec-CCH---HHH--------hcCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCCCC-CCcc
Confidence            999999999999999888 322   111        117999999999985699999999999 99999997641 2233


Q ss_pred             -echHHHH-hcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          184 -LSSFEVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       184 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                       ++...++ .+++++.|+..+.   .++++++++++++|++++.  + ++|+++++++||+.+++++.. |+|+++++
T Consensus       274 ~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvVi~~~~  345 (348)
T 3two_A          274 VLSVFDFIHLGNRKVYGSLIGG---IKETQEMVDFSIKHNIYPE--I-DLILGKDIDTAYHNLTHGKAKFRYVIDMKK  345 (348)
T ss_dssp             EEEHHHHHHTCSCEEEECCSCC---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCCSEEEEEGGG
T ss_pred             cCCHHHHHhhCCeEEEEEecCC---HHHHHHHHHHHHhCCCCce--E-EEEEHHHHHHHHHHHHcCCCceEEEEecCC
Confidence             5666676 8999999987554   4679999999999987663  4 899999999999999999876 99999853

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=4.6e-37  Score=257.36  Aligned_cols=240  Identities=14%  Similarity=0.138  Sum_probs=203.5

Q ss_pred             CCCCccccCCCCceeeeec---cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCC-----CCCE
Q 025101            3 RDQTSRFKDLRGETIHHFV---SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE-----VGST   74 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-----~g~~   74 (258)
                      |+++..|+  +||+|++..   ..|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..+++     +|++
T Consensus        97 G~~v~~~~--vGdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~  174 (363)
T 4dvj_A           97 GPDVTLFR--PGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPA  174 (363)
T ss_dssp             CTTCCSCC--TTCEEEECCCTTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEE
T ss_pred             CCCCCCCC--CCCEEEEccCCCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCE
Confidence            56778888  999999653   3699999999999999999999999999999999999999988888888     8999


Q ss_pred             EEEEc-cCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           75 VVIFG-LGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        75 vlI~G-~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      |||+| +|++|++++|+||.+ |+ +|++++++++|.++++++|++.++|+++    ++.+.+++..++++|+||||+|+
T Consensus       175 VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~~~~~lGad~vi~~~~----~~~~~v~~~~~~g~Dvvid~~g~  249 (363)
T 4dvj_A          175 ILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQEWVKSLGAHHVIDHSK----PLAAEVAALGLGAPAFVFSTTHT  249 (363)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHHHHHHTTCSEEECTTS----CHHHHHHTTCSCCEEEEEECSCH
T ss_pred             EEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC----CHHHHHHHhcCCCceEEEECCCc
Confidence            99998 599999999999984 77 9999999999999999999999999865    68888888844499999999998


Q ss_pred             hhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC-----CC----CCcHHHHHHHHHcCCCC
Q 025101          153 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL-----KA----KSDIPILLKRYMDKELE  223 (258)
Q Consensus       153 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~g~~~  223 (258)
                      +..++.++++++++ |+++.+|..     ..++...+..+++++.++.....     ..    .+.++++++++++|+++
T Consensus       250 ~~~~~~~~~~l~~~-G~iv~~g~~-----~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~  323 (363)
T 4dvj_A          250 DKHAAEIADLIAPQ-GRFCLIDDP-----SAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLR  323 (363)
T ss_dssp             HHHHHHHHHHSCTT-CEEEECSCC-----SSCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSC
T ss_pred             hhhHHHHHHHhcCC-CEEEEECCC-----CccchHHHhhccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCee
Confidence            87799999999999 999999632     23455567788999988653321     00    24578999999999766


Q ss_pred             CCccccccc---ccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          224 LDKFVTHEM---KFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       224 ~~~~~~~~~---~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      +  .+++++   +++++++||+.+.+++.. |+|+++.
T Consensus       324 ~--~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~~  359 (363)
T 4dvj_A          324 T--TLTNRLSPINAANLKQAHALVESGTARGKVVIEGF  359 (363)
T ss_dssp             C--CEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEECS
T ss_pred             c--cccceecCCCHHHHHHHHHHHHhCCCceEEEEeCc
Confidence            4  455544   999999999999998877 9999985

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=5.7e-38  Score=261.83  Aligned_cols=241  Identities=15%  Similarity=0.149  Sum_probs=200.6

Q ss_pred             CCCC-ccccCCCCceeeeec---cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCC-CEEEE
Q 025101            3 RDQT-SRFKDLRGETIHHFV---SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVG-STVVI   77 (258)
Q Consensus         3 ~~~~-~~~~~~~G~~v~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g-~~vlI   77 (258)
                      |+++ ..|+  +||+|+...   ..|+|+||+++|++.++++|+++++++|+++++.+.|||++ .+..+ ++| +++||
T Consensus        95 G~~v~~~~~--vGdrV~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~-~~~~~-~~g~~~vli  170 (349)
T 3pi7_A           95 GDEPYAKSL--VGKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAM-FDIVK-QEGEKAFVM  170 (349)
T ss_dssp             CSSHHHHHH--TTCEEEEECTTSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHH-HHHHH-HHCCSEEEE
T ss_pred             CCCccCCCC--CCCEEEEeccCCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHH-HHHHh-hCCCCEEEE
Confidence            4556 7788  999999664   46999999999999999999999999999999999999965 45556 666 68888


Q ss_pred             Ec-cCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhh
Q 025101           78 FG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL  155 (258)
Q Consensus        78 ~G-~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~  155 (258)
                      +| +|++|++++|+++..|+ +|+++++++++.++++++|++.++|+++   +++.+.+++.+++ ++|+||||+|.+. 
T Consensus       171 ~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~v~~~~~~~g~D~vid~~g~~~-  245 (349)
T 3pi7_A          171 TAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDIGAAHVLNEKA---PDFEATLREVMKAEQPRIFLDAVTGPL-  245 (349)
T ss_dssp             SSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHTCSEEEETTS---TTHHHHHHHHHHHHCCCEEEESSCHHH-
T ss_pred             eCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCc---HHHHHHHHHHhcCCCCcEEEECCCChh-
Confidence            85 59999999999999999 9999999999999999999999999988   8999999999887 9999999999887 


Q ss_pred             HHHHHHhhhcCCceEEEecccCCCCceeech-HHHHhcCceEEecccCCCC------CCCcHHHHHHHHHcCCCCCCccc
Q 025101          156 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSS-FEVLHSGKILMGSLFGGLK------AKSDIPILLKRYMDKELELDKFV  228 (258)
Q Consensus       156 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~  228 (258)
                      +..++++++++ |+++.+|.... ....++. ..++.+++++.++..+.+.      ..+.++++++++++|++  ++++
T Consensus       246 ~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i  321 (349)
T 3pi7_A          246 ASAIFNAMPKR-ARWIIYGRLDP-DATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRW--STDV  321 (349)
T ss_dssp             HHHHHHHSCTT-CEEEECCCSCC-SCCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSC--CC-C
T ss_pred             HHHHHhhhcCC-CEEEEEeccCC-CCCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCc--cccc
Confidence            78999999999 99999996543 2344555 6778899999998654321      12457788889999976  4568


Q ss_pred             ccccccccHHHHHHHHhcCCeeEEEEee
Q 025101          229 THEMKFEEINSAFDLLIKGKCLRCVIWM  256 (258)
Q Consensus       229 ~~~~~~~~~~~a~~~~~~~~~~k~vi~~  256 (258)
                      +++|+++++++||+.+.++...|+|+++
T Consensus       322 ~~~~~l~~~~~A~~~~~~~~~gKvvl~p  349 (349)
T 3pi7_A          322 TAVVPLAEAIAWVPAELTKPNGKVFIRP  349 (349)
T ss_dssp             CEEEEHHHHHHHHHHHHTSSSSCEEEEC
T ss_pred             ceEEcHHHHHHHHHHHhCCCCceEEEeC
Confidence            8999999999999966665555999875

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=5.5e-38  Score=262.64  Aligned_cols=219  Identities=18%  Similarity=0.205  Sum_probs=189.4

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCC------CEEEEEccCHHHHHH-HHHH-HHc
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVG------STVVIFGLGSIGLAV-AEGA-RLC   94 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g------~~vlI~G~g~~G~~a-~~l~-~~~   94 (258)
                      .|+|+||+++|++.++++|++++ ++| +++.++.|||+++ +..++++|      ++|||+|+|++|+++ +|+| |.+
T Consensus       121 ~G~~aey~~v~~~~~~~iP~~~~-~~a-al~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~  197 (357)
T 2b5w_A          121 HGYMSEFFTSPEKYLVRIPRSQA-ELG-FLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK  197 (357)
T ss_dssp             CCSCBSEEEEEGGGEEECCGGGS-TTG-GGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT
T ss_pred             CcceeeEEEEchHHeEECCCCcc-hhh-hhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc
Confidence            59999999999999999999999 654 5677999999998 67889999      999999999999999 9999 999


Q ss_pred             CCCeEEEEcCCcc---hHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEE
Q 025101           95 GATRIIGVDVISE---KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI  171 (258)
Q Consensus        95 g~~~v~~~~~~~~---~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  171 (258)
                      |+++|++++++++   |.++++++|++++ |+++   +++.+ +++. ++++|+|||++|.+..++.++++++++ |+++
T Consensus       198 Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~~---~~~~~-i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~-G~iv  270 (357)
T 2b5w_A          198 GYENLYCLGRRDRPDPTIDIIEELDATYV-DSRQ---TPVED-VPDV-YEQMDFIYEATGFPKHAIQSVQALAPN-GVGA  270 (357)
T ss_dssp             CCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETTT---SCGGG-HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEE-EEEE
T ss_pred             CCcEEEEEeCCcccHHHHHHHHHcCCccc-CCCc---cCHHH-HHHh-CCCCCEEEECCCChHHHHHHHHHHhcC-CEEE
Confidence            9944999999999   9999999999988 8887   67777 7777 558999999999986699999999999 9999


Q ss_pred             EecccCCCCceeechHHH----HhcCceEEecccCCCCCCCcHHHHHHHHHcC--CCCCCcccccccccccHHHHHHHHh
Q 025101          172 VLGVDQPGSQLSLSSFEV----LHSGKILMGSLFGGLKAKSDIPILLKRYMDK--ELELDKFVTHEMKFEEINSAFDLLI  245 (258)
Q Consensus       172 ~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~a~~~~~  245 (258)
                      .+|.... ...+++...+    +.+++++.++..+.   .++++++++++++|  ++ +.++++++|+++++++||+.+ 
T Consensus       271 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~~~~-~~~~i~~~~~l~~~~~A~~~~-  344 (357)
T 2b5w_A          271 LLGVPSD-WAFEVDAGAFHREMVLHNKALVGSVNSH---VEHFEAATVTFTKLPKWF-LEDLVTGVHPLSEFEAAFDDD-  344 (357)
T ss_dssp             ECCCCCC-CCCCCCHHHHHHHHHHTTCEEEECCCCC---HHHHHHHHHHHHHSCHHH-HHHHEEEEEEGGGGGGGGCCS-
T ss_pred             EEeCCCC-CCceecHHHHhHHHHhCCeEEEEeccCC---HHHHHHHHHHHHhCchhh-hhhhcceeecHHHHHHHHHHh-
Confidence            9997653 3345666666    78899999986443   46799999999999  76 677788999999999999988 


Q ss_pred             cCCeeEEEEeeCC
Q 025101          246 KGKCLRCVIWMGE  258 (258)
Q Consensus       246 ~~~~~k~vi~~~~  258 (258)
                       +...|+|+++++
T Consensus       345 -~~~gKvvi~~~~  356 (357)
T 2b5w_A          345 -DTTIKTAIEFST  356 (357)
T ss_dssp             -TTCCEEEEECCC
T ss_pred             -CCCceEEEEecC
Confidence             444599999875

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=5.7e-37  Score=257.24  Aligned_cols=248  Identities=13%  Similarity=0.106  Sum_probs=203.9

Q ss_pred             CCCCccccCCCCceeeeec-cccceeeeEEEecceEEEcCC-----------CCCccchhhcchhhhhhhhhhhhhcCCC
Q 025101            3 RDQTSRFKDLRGETIHHFV-SVSSFSEYTVLDIAHVVKVDP-----------TVPPNRACLLSCGVSTGVGAAWRTANVE   70 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~-~~g~~~~~~~v~~~~~~~~p~-----------~~~~~~aa~~~~~~~ta~~~l~~~~~~~   70 (258)
                      |+++..|+  +||+|++.. ..|+|+||+++|++.++++|+           ++++++|+++++++.|||+++.+..+++
T Consensus        88 G~~v~~~~--vGdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~  165 (364)
T 1gu7_A           88 GSNVSSLE--AGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLT  165 (364)
T ss_dssp             CTTCCSCC--TTCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCC
T ss_pred             CCCCCcCC--CCCEEEecCCCCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccC
Confidence            56778888  999999764 469999999999999999998           8999999999999999999987667899


Q ss_pred             CC-CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch----HHHHHhcCCceEEcCCCCCCccHHHHHHHhc--CC-
Q 025101           71 VG-STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK----FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT--DG-  141 (258)
Q Consensus        71 ~g-~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~----~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~--~~-  141 (258)
                      +| ++|||+|+ |++|++++|+||.+|+ +|++++++.++    .++++++|+++++|+++...+++.+.+++.+  ++ 
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~  244 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGG  244 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCC
Confidence            99 99999997 9999999999999999 88888876665    6778999999999876310146788888887  45 


Q ss_pred             CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC------CCcHHHHHH
Q 025101          142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA------KSDIPILLK  215 (258)
Q Consensus       142 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  215 (258)
                      ++|+||||+|++. ...++++++++ |+++.+|.... ....++...++.+++++.++....+..      .+.++++++
T Consensus       245 g~Dvvid~~G~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  321 (364)
T 1gu7_A          245 EAKLALNCVGGKS-STGIARKLNNN-GLMLTYGGMSF-QPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIA  321 (364)
T ss_dssp             CEEEEEESSCHHH-HHHHHHTSCTT-CEEEECCCCSS-CCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CceEEEECCCchh-HHHHHHHhccC-CEEEEecCCCC-CCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHH
Confidence            8999999999888 45889999999 99999996543 345667667788899999976432110      246889999


Q ss_pred             HHHcCCCCCCccccccc-ccccHHHHHHHHhcCCee-EEEEee
Q 025101          216 RYMDKELELDKFVTHEM-KFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       216 ~~~~g~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      ++.+|++++....+..+ +++++.+||+.+.+++.. |+|+++
T Consensus       322 l~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          322 WYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY  364 (364)
T ss_dssp             HHHHTCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             HHHcCCcccccceEEecCchhhHHHHHHHHHhCCCCceEEEeC
Confidence            99999888765544444 456999999999887665 999875

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=3.3e-38  Score=259.73  Aligned_cols=229  Identities=17%  Similarity=0.193  Sum_probs=178.0

Q ss_pred             CCCCccccCCCCceeeeecc---ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEc
Q 025101            3 RDQTSRFKDLRGETIHHFVS---VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG   79 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G   79 (258)
                      |+++..|+  +||+|+++.+   .|+|+||+++|++.++++|+++++++|++++++++|||+++ +..++++|++|||+|
T Consensus        74 G~~v~~~~--vGdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G  150 (315)
T 3goh_A           74 GAKVDSKM--LGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVG  150 (315)
T ss_dssp             CTTSCGGG--TTCEEEEECCTTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEEC
T ss_pred             CCCCCCCC--CCCEEEEeCCCCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEEC
Confidence            56778898  9999997653   69999999999999999999999999999999999999998 889999999999999


Q ss_pred             cCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHH
Q 025101           80 LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEA  159 (258)
Q Consensus        80 ~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~  159 (258)
                      +|++|++++|+||.+|+ +|++++ +++|.++++++|++++++  +      .+.+    ++++|+||||+|++. +..+
T Consensus       151 aG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~--d------~~~v----~~g~Dvv~d~~g~~~-~~~~  215 (315)
T 3goh_A          151 FGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR--E------PSQV----TQKYFAIFDAVNSQN-AAAL  215 (315)
T ss_dssp             CSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES--S------GGGC----CSCEEEEECC--------TT
T ss_pred             CCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc--C------HHHh----CCCccEEEECCCchh-HHHH
Confidence            99999999999999999 999999 999999999999998884  1      1112    348999999999987 6889


Q ss_pred             HHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC---C-------CCCcHHHHHHHHHcCCCCCCcccc
Q 025101          160 YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL---K-------AKSDIPILLKRYMDKELELDKFVT  229 (258)
Q Consensus       160 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~g~~~~~~~~~  229 (258)
                      +++++++ |+++.+|......  ..   ..+.+.+++........   .       ..+.++++++++++|++  +++++
T Consensus       216 ~~~l~~~-G~~v~~g~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~  287 (315)
T 3goh_A          216 VPSLKAN-GHIICIQDRIPAP--ID---PAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKM--EIAAP  287 (315)
T ss_dssp             GGGEEEE-EEEEEECCC---------------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHHTTSS--CCCCC
T ss_pred             HHHhcCC-CEEEEEeCCCCcc--cc---chhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHHCCCc--ccccc
Confidence            9999999 9999997543211  11   12233444433321110   0       01246789999999965  46788


Q ss_pred             cccccccHHHHHHHHhcCCeeEEEEeeCC
Q 025101          230 HEMKFEEINSAFDLLIKGKCLRCVIWMGE  258 (258)
Q Consensus       230 ~~~~~~~~~~a~~~~~~~~~~k~vi~~~~  258 (258)
                      ++|+++++++||+.++ +...|+|++++|
T Consensus       288 ~~~~l~~~~~A~~~~~-~~~gKvvi~~~~  315 (315)
T 3goh_A          288 DIFRFEQMIEALDHSE-QTKLKTVLTLNE  315 (315)
T ss_dssp             EEEEGGGHHHHHHHHH-HHCCCEEEESCC
T ss_pred             eEecHHHHHHHHHHHH-hcCCcEEEEecC
Confidence            9999999999999998 444499999875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=3.6e-36  Score=250.73  Aligned_cols=221  Identities=25%  Similarity=0.317  Sum_probs=194.4

Q ss_pred             cccceeeeEEEec-ceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccC-HHHHHHHHHHHHc-CCCe
Q 025101           22 SVSSFSEYTVLDI-AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLC-GATR   98 (258)
Q Consensus        22 ~~g~~~~~~~v~~-~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g-~~G~~a~~l~~~~-g~~~   98 (258)
                      ..|+|+||+++|+ +.++++ +++++++|+.+++++.|||+++ ...++++|++|||+|+| ++|++++|+++.. |+ +
T Consensus       122 ~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~  198 (347)
T 1jvb_A          122 FDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-T  198 (347)
T ss_dssp             BCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-E
T ss_pred             CCCcceeEEEecCccceEEe-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-e
Confidence            3589999999999 999999 9999999999999999999997 45889999999999985 9999999999999 99 8


Q ss_pred             EEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcC-CCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101           99 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus        99 v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      |+++++++++.+.++++|++.++|+.+   +++.+.+.+.+. +++|++||++|.+..++.++++++++ |+++.+|...
T Consensus       199 Vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~  274 (347)
T 1jvb_A          199 IIGVDVREEAVEAAKRAGADYVINASM---QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFG  274 (347)
T ss_dssp             EEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSC
T ss_pred             EEEEcCCHHHHHHHHHhCCCEEecCCC---ccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCC
Confidence            999999999999999999999999887   788888888876 48999999999986699999999999 9999999765


Q ss_pred             CCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          178 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      . .. .++...++.+++++.++....   .++++++++++.+|+++  +.++++|+++++++||+.+++++.. |+|+++
T Consensus       275 ~-~~-~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  347 (347)
T 1jvb_A          275 A-DL-HYHAPLITLSEIQFVGSLVGN---QSDFLGIMRLAEAGKVK--PMITKTMKLEEANEAIDNLENFKAIGRQVLIP  347 (347)
T ss_dssp             C-CC-CCCHHHHHHHTCEEEECCSCC---HHHHHHHHHHHHTTSSC--CCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             C-CC-CCCHHHHHhCceEEEEEeccC---HHHHHHHHHHHHcCCCC--ceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence            2 22 566667788899999986433   46799999999999664  5688999999999999999988766 999874

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=1.2e-36  Score=251.05  Aligned_cols=232  Identities=16%  Similarity=0.193  Sum_probs=197.5

Q ss_pred             CCCCccccCCCCceeeeecc----ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE
Q 025101            3 RDQTSRFKDLRGETIHHFVS----VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF   78 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~----~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~   78 (258)
                      |+++..|+  +||+|+++.+    .|+|+||+++|++.++++|+++++++|+++++++.|||+++ +..++++|++|||+
T Consensus        83 G~~v~~~~--~GdrV~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~  159 (321)
T 3tqh_A           83 GSDVNNVN--IGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIH  159 (321)
T ss_dssp             CTTCCSCC--TTCEEEEECSTTTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEES
T ss_pred             CCCCCCCC--CCCEEEEccCCCCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEE
Confidence            56778888  9999997753    59999999999999999999999999999999999999998 88999999999999


Q ss_pred             c-cCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc-HHHHHHHhcCCCCCEEEEecCChhhH
Q 025101           79 G-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS-VSQIIIDMTDGGADYCFECVGLASLV  156 (258)
Q Consensus        79 G-~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~-~~~~i~~~~~~~~d~v~d~~g~~~~~  156 (258)
                      | +|++|++++|+|+.+|+ +|++++ ++++.++++++|+++++|+++   ++ +.+.+     .++|+||||+|++. +
T Consensus       160 Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~lGa~~~i~~~~---~~~~~~~~-----~g~D~v~d~~g~~~-~  228 (321)
T 3tqh_A          160 AGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKALGAEQCINYHE---EDFLLAIS-----TPVDAVIDLVGGDV-G  228 (321)
T ss_dssp             STTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHHTCSEEEETTT---SCHHHHCC-----SCEEEEEESSCHHH-H
T ss_pred             cCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHcCCCEEEeCCC---cchhhhhc-----cCCCEEEECCCcHH-H
Confidence            7 69999999999999999 899887 566789999999999999988   66 54433     37999999999988 6


Q ss_pred             HHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCccccccccccc
Q 025101          157 QEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE  236 (258)
Q Consensus       157 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  236 (258)
                      ..++++++++ |+++.+|....    ......+..+++++.++...  ...++++++++++.+|++++  .++++|++++
T Consensus       229 ~~~~~~l~~~-G~iv~~g~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~l~~--~i~~~~~l~~  299 (321)
T 3tqh_A          229 IQSIDCLKET-GCIVSVPTITA----GRVIEVAKQKHRRAFGLLKQ--FNIEELHYLGKLVSEDKLRI--EISRIFQLSE  299 (321)
T ss_dssp             HHHGGGEEEE-EEEEECCSTTH----HHHHHHHHHTTCEEECCCCC--CCHHHHHHHHHHHHTTSSCC--CEEEEECGGG
T ss_pred             HHHHHhccCC-CEEEEeCCCCc----hhhhhhhhhcceEEEEEecC--CCHHHHHHHHHHHHCCCccc--ccccEEcHHH
Confidence            9999999999 99999985422    11222356778998885422  22467999999999997664  5889999999


Q ss_pred             HHHHHHHHhcCCee-EEEEeeC
Q 025101          237 INSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       237 ~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      +++||+.+++++.. |+|++++
T Consensus       300 ~~~A~~~~~~~~~~gKvvl~~~  321 (321)
T 3tqh_A          300 AVTAHELLETGHVRGKLVFKVR  321 (321)
T ss_dssp             HHHHHHHHHTTCCCSEEEEECC
T ss_pred             HHHHHHHHHcCCCCceEEEEeC
Confidence            99999999998877 9999874

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=2.2e-36  Score=252.87  Aligned_cols=219  Identities=21%  Similarity=0.306  Sum_probs=186.9

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCC-CCCEEEEEccCHHHHHHHHHHHHcCCCeEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRII  100 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~  100 (258)
                      ..|+|+||+++|++.++++|+++++++|+++++++.|||+++. ..+++ +|++|||+|+|++|++++|+++.+|+ +|+
T Consensus       131 ~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi  208 (357)
T 2cf5_A          131 TQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLS-HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVT  208 (357)
T ss_dssp             CCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGTHHHHHHHHHH-HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEE
T ss_pred             CCCccccEEEechhhEEECcCCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEE
Confidence            3589999999999999999999999999999999999999874 56788 99999999999999999999999999 999


Q ss_pred             EEcCCcchHHHHH-hcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          101 GVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       101 ~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      ++++++++.+.++ ++|+++++|+++   .   +.+++.++ ++|+|||++|.+..++.++++++++ |+++.+|.....
T Consensus       209 ~~~~~~~~~~~~~~~lGa~~vi~~~~---~---~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~  280 (357)
T 2cf5_A          209 VISSSNKKREEALQDLGADDYVIGSD---Q---AKMSELAD-SLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGVINNP  280 (357)
T ss_dssp             EEESSTTHHHHHHTTSCCSCEEETTC---H---HHHHHSTT-TEEEEEECCCSCCCSHHHHTTEEEE-EEEEECSCCSSC
T ss_pred             EEeCChHHHHHHHHHcCCceeecccc---H---HHHHHhcC-CCCEEEECCCChHHHHHHHHHhccC-CEEEEeCCCCCC
Confidence            9999999999888 899999999876   3   34555543 7999999999875589999999999 999999975432


Q ss_pred             CceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      . ..++.. ++.+++++.|+..+.   .++++++++++.+|++++.  + ++|+++++++||+.+++++.. |+|+++++
T Consensus       281 ~-~~~~~~-~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  352 (357)
T 2cf5_A          281 L-QFLTPL-LMLGRKVITGSFIGS---MKETEEMLEFCKEKGLSSI--I-EVVKMDYVNTAFERLEKNDVRYRFVVDVEG  352 (357)
T ss_dssp             C-CCCHHH-HHHHTCEEEECCSCC---HHHHHHHHHHHHHTTCCCC--E-EEEEGGGHHHHHHHHHTTCSSSEEEEETTS
T ss_pred             c-cccCHH-HHhCccEEEEEccCC---HHHHHHHHHHHHcCCCCCc--e-EEEeHHHHHHHHHHHHCCCCceEEEEeCCc
Confidence            1 114445 778899999986433   4678999999999977653  4 799999999999999988766 99998753

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-36  Score=250.69  Aligned_cols=242  Identities=12%  Similarity=0.174  Sum_probs=204.5

Q ss_pred             CCCCccccCCCCceeeeec--cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc
Q 025101            3 RDQTSRFKDLRGETIHHFV--SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL   80 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~--~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~   80 (258)
                      |+++..|+  +||+| ++.  ..|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+
T Consensus        73 G~~v~~~~--~GdrV-~~~g~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga  149 (327)
T 1qor_A           73 GSGVKHIK--AGDRV-VYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAA  149 (327)
T ss_dssp             CTTCCSCC--TTCEE-EESCCSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred             CCCCCCCC--CCCEE-EECCCCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECC
Confidence            56777888  99999 454  35999999999999999999999999999999999999999877889999999999995


Q ss_pred             -CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHH
Q 025101           81 -GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQE  158 (258)
Q Consensus        81 -g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~  158 (258)
                       |++|++++|+++..|+ +|+++++++++.+.++++|++.++|+.+   +++.+.+.+.+.+ ++|++|||+|. ..++.
T Consensus       150 ~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~D~vi~~~g~-~~~~~  224 (327)
T 1qor_A          150 AGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYRE---EDLVERLKEITGGKKVRVVYDSVGR-DTWER  224 (327)
T ss_dssp             TBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTCCEEEEEECSCG-GGHHH
T ss_pred             CCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC---ccHHHHHHHHhCCCCceEEEECCch-HHHHH
Confidence             9999999999999999 9999999999999999999999999887   7888889888876 89999999994 45999


Q ss_pred             HHHhhhcCCceEEEecccCCCCceeechHHHHhc-CceEEecccCCCC-----CCCcHHHHHHHHHcCCCCCCcccc--c
Q 025101          159 AYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS-GKILMGSLFGGLK-----AKSDIPILLKRYMDKELELDKFVT--H  230 (258)
Q Consensus       159 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~--~  230 (258)
                      ++++++++ |+++.+|...+. ...++...++.+ ++++.+...+.+.     ..+.++++++++.+|+++  +.++  +
T Consensus       225 ~~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~  300 (327)
T 1qor_A          225 SLDCLQRR-GLMVSFGNSSGA-VTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIK--VDVAEQQ  300 (327)
T ss_dssp             HHHTEEEE-EEEEECCCTTCC-CCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSC--CCCCGGG
T ss_pred             HHHHhcCC-CEEEEEecCCCC-CCccCHHHHhhccceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCcc--cccccCc
Confidence            99999999 999999976432 234555666777 7777754321111     124578899999999765  4577  8


Q ss_pred             ccccccHHHHHHHHhcCCee-EEEEee
Q 025101          231 EMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       231 ~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +|+++++++||+.+++++.. |+++++
T Consensus       301 ~~~l~~~~~A~~~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          301 KYPLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_dssp             EEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred             EEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            99999999999999887765 999864

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=5.3e-37  Score=256.68  Aligned_cols=242  Identities=17%  Similarity=0.173  Sum_probs=197.4

Q ss_pred             CCCCccccCCCCceeeeec-cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-
Q 025101            3 RDQTSRFKDLRGETIHHFV-SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-   80 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-   80 (258)
                      |+++..|+  +||+|++.. +.|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+ 
T Consensus       100 G~~v~~~~--vGdrV~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~  177 (357)
T 1zsy_A          100 GSNVTGLK--PGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASN  177 (357)
T ss_dssp             CTTCCSCC--TTCEEEESSSCSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTT
T ss_pred             CCCCCCCC--CCCEEEEcCCCCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence            56777888  999999764 46999999999999999999999999999999899999999877889999999999997 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcc----hHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC--CCCEEEEecCChh
Q 025101           81 GSIGLAVAEGARLCGATRIIGVDVISE----KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG--GADYCFECVGLAS  154 (258)
Q Consensus        81 g~~G~~a~~l~~~~g~~~v~~~~~~~~----~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~--~~d~v~d~~g~~~  154 (258)
                      |++|++++|+||.+|+ ++++++++++    +.++++++|+++++|+++   . ..+.+.+.+.+  ++|+||||+|++.
T Consensus       178 G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~---~-~~~~~~~~~~~~~~~Dvvid~~g~~~  252 (357)
T 1zsy_A          178 SGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLKSLGAEHVITEEE---L-RRPEMKNFFKDMPQPRLALNCVGGKS  252 (357)
T ss_dssp             SHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHHHHTTCSEEEEHHH---H-HSGGGGGTTSSSCCCSEEEESSCHHH
T ss_pred             CHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHHHhcCCcEEEecCc---c-hHHHHHHHHhCCCCceEEEECCCcHH
Confidence            9999999999999999 7777765543    467889999999998653   1 12334555544  5999999999877


Q ss_pred             hHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCC-------CCCcHHHHHHHHHcCCCCCCcc
Q 025101          155 LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK-------AKSDIPILLKRYMDKELELDKF  227 (258)
Q Consensus       155 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~  227 (258)
                       ...++++++++ |+++.+|.... ....++...++.+++++.++....+.       .++.++++++++.+|++++.  
T Consensus       253 -~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--  327 (357)
T 1zsy_A          253 -STELLRQLARG-GTMVTYGGMAK-QPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAP--  327 (357)
T ss_dssp             -HHHHHTTSCTT-CEEEECCCCTT-CCBCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCC--
T ss_pred             -HHHHHHhhCCC-CEEEEEecCCC-CCCCCCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCc--
Confidence             56799999999 99999985432 33456666677889999998643210       12357889999999977654  


Q ss_pred             cccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          228 VTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       228 ~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +.++|+++++++||+.+.+++.. |+|+++
T Consensus       328 ~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (357)
T 1zsy_A          328 ACSQVPLQDYQSALEASMKPFISSKQILTM  357 (357)
T ss_dssp             CEEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred             cceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence            55899999999999999887766 999875

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.5e-36  Score=252.83  Aligned_cols=218  Identities=22%  Similarity=0.368  Sum_probs=172.6

Q ss_pred             cccceeeeEEEe-cceEEEcCCCCCccchhhcchhhhhhhhhhhhh----cCCCCCCEEEEEccCHHHHHHHHHHHHc--
Q 025101           22 SVSSFSEYTVLD-IAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT----ANVEVGSTVVIFGLGSIGLAVAEGARLC--   94 (258)
Q Consensus        22 ~~g~~~~~~~v~-~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~----~~~~~g~~vlI~G~g~~G~~a~~l~~~~--   94 (258)
                      ..|+|+||+++| ++.++++ +++++++|+.+++++.|||+++...    .++ +|++|||+|+|++|++++|+|+.+  
T Consensus       118 ~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~  195 (344)
T 2h6e_A          118 TNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMK  195 (344)
T ss_dssp             BCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCT
T ss_pred             cCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcC
Confidence            459999999999 9999999 9999999999999999999998654    288 999999999999999999999999  


Q ss_pred             CCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEe
Q 025101           95 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus        95 g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      |+ +|+++++++++.++++++|+++++|+++   .  .+.+.+++++ ++|+|||++|.+..++.++++++++ |+++.+
T Consensus       196 Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~--~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~  268 (344)
T 2h6e_A          196 NI-TIVGISRSKKHRDFALELGADYVSEMKD---A--ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILV  268 (344)
T ss_dssp             TC-EEEEECSCHHHHHHHHHHTCSEEECHHH---H--HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEE-EEEEEC
T ss_pred             CC-EEEEEeCCHHHHHHHHHhCCCEEecccc---c--hHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcC-CEEEEe
Confidence            99 8999999999999999999999997643   1  2234455556 8999999999986699999999999 999999


Q ss_pred             cccCCCCceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EE
Q 025101          174 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RC  252 (258)
Q Consensus       174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~  252 (258)
                      |....  ...++...++.+++++.++....   .++++++++++.+|++++  .+ ++|+++++++||+.+++++.. |+
T Consensus       269 g~~~~--~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~--~i-~~~~l~~~~~A~~~~~~~~~~gKv  340 (344)
T 2h6e_A          269 GMEGK--RVSLEAFDTAVWNKKLLGSNYGS---LNDLEDVVRLSESGKIKP--YI-IKVPLDDINKAFTNLDEGRVDGRQ  340 (344)
T ss_dssp             CCCSS--CCCCCHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSSCC--CE-EEECC----------------CEE
T ss_pred             CCCCC--CcccCHHHHhhCCcEEEEEecCC---HHHHHHHHHHHHcCCCCc--ce-EEEeHHHHHHHHHHHHcCCCceEE
Confidence            97543  34566667788899999986433   467999999999997654  47 999999999999999888765 99


Q ss_pred             EEee
Q 025101          253 VIWM  256 (258)
Q Consensus       253 vi~~  256 (258)
                      |+++
T Consensus       341 vl~~  344 (344)
T 2h6e_A          341 VITP  344 (344)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9864

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=1.9e-37  Score=256.26  Aligned_cols=237  Identities=14%  Similarity=0.132  Sum_probs=198.8

Q ss_pred             CCccccCCCCceeeeec------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhh--hhcCCCC--CCE
Q 025101            5 QTSRFKDLRGETIHHFV------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW--RTANVEV--GST   74 (258)
Q Consensus         5 ~~~~~~~~~G~~v~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~--g~~   74 (258)
                      |+..|+  +||+|+.+.      ..|+|+||+++|++.++++|+++++++|+++++++.|||+++.  ...++++  |+ 
T Consensus        73 Gv~~~~--vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~-  149 (324)
T 3nx4_A           73 EDPRFH--AGQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGE-  149 (324)
T ss_dssp             SSTTCC--TTCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCC-
T ss_pred             CCCCCC--CCCEEEEcccccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCe-
Confidence            456787  999999542      5699999999999999999999999999999999999999875  3455665  45 


Q ss_pred             EEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCCh
Q 025101           75 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus        75 vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      |||+|+ |++|++++|+|+.+|+ +|++++++++|.++++++|+++++|+++   .+.   +++++++++|++|||+|++
T Consensus       150 VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~---~~~~~~~~~d~v~d~~g~~  222 (324)
T 3nx4_A          150 VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANRILSRDE---FAE---SRPLEKQLWAGAIDTVGDK  222 (324)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSEEEEGGG---SSC---CCSSCCCCEEEEEESSCHH
T ss_pred             EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecCC---HHH---HHhhcCCCccEEEECCCcH
Confidence            999997 9999999999999999 9999999999999999999999999877   333   4555555899999999987


Q ss_pred             hhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC---CCcHHHHHHHHHcCCCCCCccccc
Q 025101          154 SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTH  230 (258)
Q Consensus       154 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~  230 (258)
                      . ++.++++++++ |+++.+|.... ...+++...++.|++++.++.......   .+.++++++++.+|+++  +. ++
T Consensus       223 ~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~-~~  296 (324)
T 3nx4_A          223 V-LAKVLAQMNYG-GCVAACGLAGG-FALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFYA--QA-AT  296 (324)
T ss_dssp             H-HHHHHHTEEEE-EEEEECCCTTC-SEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCHHHHH--HH-EE
T ss_pred             H-HHHHHHHHhcC-CEEEEEecCCC-CCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHcCCCC--CC-ce
Confidence            5 99999999999 99999997644 345566667788899999986433211   24577888999999654  34 79


Q ss_pred             ccccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          231 EMKFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       231 ~~~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      +|+++++++||+.+++++.. |+|++++
T Consensus       297 ~~~l~~~~~A~~~~~~~~~~gkvvv~~~  324 (324)
T 3nx4_A          297 EITLADAPKFADAIINNQVQGRTLVKIK  324 (324)
T ss_dssp             EEEGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             eEeHHHHHHHHHHHHhCCCCceEEEecC
Confidence            99999999999999998887 9999875

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=1.1e-35  Score=249.25  Aligned_cols=218  Identities=20%  Similarity=0.324  Sum_probs=188.0

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCC-CCCEEEEEccCHHHHHHHHHHHHcCCCeEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRII  100 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~  100 (258)
                      ..|+|+||+++|++.++++|+++++++|+++++++.|||+++. ..+++ +|++|||+|+|++|++++|+++.+|+ +|+
T Consensus       138 ~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi  215 (366)
T 1yqd_A          138 TYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVT  215 (366)
T ss_dssp             CCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEE
T ss_pred             CCCccccEEEEchhhEEECCCCCCHHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEE
Confidence            3589999999999999999999999999999999999999874 46777 99999999999999999999999999 999


Q ss_pred             EEcCCcchHHHHH-hcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC
Q 025101          101 GVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  179 (258)
Q Consensus       101 ~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  179 (258)
                      ++++++++.+.++ ++|++.++|+++   .   +.+.+.++ ++|+|||++|....++.++++++++ |+++.+|.... 
T Consensus       216 ~~~~~~~~~~~~~~~lGa~~v~~~~~---~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-  286 (366)
T 1yqd_A          216 VISTSPSKKEEALKNFGADSFLVSRD---Q---EQMQAAAG-TLDGIIDTVSAVHPLLPLFGLLKSH-GKLILVGAPEK-  286 (366)
T ss_dssp             EEESCGGGHHHHHHTSCCSEEEETTC---H---HHHHHTTT-CEEEEEECCSSCCCSHHHHHHEEEE-EEEEECCCCSS-
T ss_pred             EEeCCHHHHHHHHHhcCCceEEeccC---H---HHHHHhhC-CCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEccCCC-
Confidence            9999999998877 899999998876   3   34555553 7999999999875589999999999 99999997543 


Q ss_pred             CceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          180 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                       ...++...++.+++++.++..+.   .++++++++++.+|++++.  + ++|+++++++||+.+++++.. |+|++++
T Consensus       287 -~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  358 (366)
T 1yqd_A          287 -PLELPAFSLIAGRKIVAGSGIGG---MKETQEMIDFAAKHNITAD--I-EVISTDYLNTAMERLAKNDVRYRFVIDVG  358 (366)
T ss_dssp             -CEEECHHHHHTTTCEEEECCSCC---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCSSEEEECHH
T ss_pred             -CCCcCHHHHHhCCcEEEEecCCC---HHHHHHHHHHHHcCCCCCc--e-EEEcHHHHHHHHHHHHcCCcceEEEEEcc
Confidence             34567777888999999986433   4578999999999977654  4 799999999999999988766 9999764

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=1.1e-35  Score=249.06  Aligned_cols=244  Identities=20%  Similarity=0.226  Sum_probs=204.1

Q ss_pred             CCCCc-cccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-
Q 025101            3 RDQTS-RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-   80 (258)
Q Consensus         3 ~~~~~-~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-   80 (258)
                      |+++. .|+  +||+|+++ ..|+|+||+++|++.++++|+. + .++++++.++.|||+++.+..++++|++|||+|+ 
T Consensus        99 G~~V~~~~~--vGdrV~~~-~~G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~  173 (362)
T 2c0c_A           99 GLSASARYT--VGQAVAYM-APGSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAA  173 (362)
T ss_dssp             CTTGGGTCC--TTCEEEEE-CSCCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTT
T ss_pred             CCCccCCCC--CCCEEEEc-cCCcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCC
Confidence            55677 888  99999965 3699999999999999999995 4 4677788899999999888889999999999995 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHH
Q 025101           81 GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAY  160 (258)
Q Consensus        81 g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~  160 (258)
                      |++|++++|+++..|+ +|+++++++++.++++++|++.++|+++   +++.+.+++.+++++|+||||+|... ++.++
T Consensus       174 G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~  248 (362)
T 2c0c_A          174 GGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKT---EPVGTVLKQEYPEGVDVVYESVGGAM-FDLAV  248 (362)
T ss_dssp             BTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT---SCHHHHHHHHCTTCEEEEEECSCTHH-HHHHH
T ss_pred             cHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCCcEEEecCC---hhHHHHHHHhcCCCCCEEEECCCHHH-HHHHH
Confidence            9999999999999999 8999999999999999999999999987   78888888877558999999999865 99999


Q ss_pred             HhhhcCCceEEEecccCCCCc------e---eechHHHHhcCceEEecccCCCC--CCCcHHHHHHHHHcCCCCCCcc--
Q 025101          161 ACCRKGWGKTIVLGVDQPGSQ------L---SLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKF--  227 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~--  227 (258)
                      ++++++ |+++.+|.......      +   .+ ...++.+++++.|+....+.  ..+.++++++++.+|++++...  
T Consensus       249 ~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~  326 (362)
T 2c0c_A          249 DALATK-GRLIVIGFISGYQTPTGLSPVKAGTL-PAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLG  326 (362)
T ss_dssp             HHEEEE-EEEEECCCGGGTTSSSCCCCCCCTTH-HHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECS
T ss_pred             HHHhcC-CEEEEEeCCCCcCccccccccccccc-HHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccc
Confidence            999999 99999996543210      0   11 24567889999998644321  1356889999999998876544  


Q ss_pred             ----cccccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          228 ----VTHEMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       228 ----~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                          +++.++++++++||+.+++++.. |+|+++++
T Consensus       327 ~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  362 (362)
T 2c0c_A          327 DLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELPH  362 (362)
T ss_dssp             TTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEECCC
T ss_pred             cccccccccCHHHHHHHHHHHHcCCCCceEEEEcCC
Confidence                44678999999999999887766 99999875

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=2.2e-36  Score=253.73  Aligned_cols=221  Identities=13%  Similarity=0.129  Sum_probs=186.4

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhh--h--hcCCC--C-------CCEEEEEccCHHHHHHH
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW--R--TANVE--V-------GSTVVIFGLGSIGLAVA   88 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~--~--~~~~~--~-------g~~vlI~G~g~~G~~a~   88 (258)
                      ..|+|+||+++|++.++++|++++ ++|+ ++.++.|||+++.  +  ..+++  +       |++|||+|+|++|++++
T Consensus       120 ~~G~~aey~~v~~~~~~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~  197 (366)
T 2cdc_A          120 MDGFMREWWYDDPKYLVKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFT  197 (366)
T ss_dssp             ECCSCBSEEEECGGGEEEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHH
T ss_pred             CCCceeEEEEechHHeEECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHH
Confidence            459999999999999999999999 8775 6679999999986  4  77888  8       99999999999999999


Q ss_pred             HHHHHcCCCeEEEEcCCc---chHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhH-HHHHHhhh
Q 025101           89 EGARLCGATRIIGVDVIS---EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLV-QEAYACCR  164 (258)
Q Consensus        89 ~l~~~~g~~~v~~~~~~~---~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~-~~~~~~l~  164 (258)
                      |+++..|+ +|+++++++   ++.++++++|++.+ | ++    ++.+.+.+ +++++|+|||++|.+..+ +.+++.++
T Consensus       198 q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga~~v-~-~~----~~~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~  269 (366)
T 2cdc_A          198 LLFRTYGL-EVWMANRREPTEVEQTVIEETKTNYY-N-SS----NGYDKLKD-SVGKFDVIIDATGADVNILGNVIPLLG  269 (366)
T ss_dssp             HHHHHHTC-EEEEEESSCCCHHHHHHHHHHTCEEE-E-CT----TCSHHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEE
T ss_pred             HHHHhCCC-EEEEEeCCccchHHHHHHHHhCCcee-c-hH----HHHHHHHH-hCCCCCEEEECCCChHHHHHHHHHHHh
Confidence            99999999 999999998   89999999999877 7 43    45556665 445899999999987658 99999999


Q ss_pred             cCCceEEEecccCCCCceeechHH---HHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC----CCcccccccccccH
Q 025101          165 KGWGKTIVLGVDQPGSQLSLSSFE---VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE----LDKFVTHEMKFEEI  237 (258)
Q Consensus       165 ~~~G~~v~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~  237 (258)
                      ++ |+++.+|.... ....++...   ++.+++++.|+....   .++++++++++.+|+++    +.++++++|+++++
T Consensus       270 ~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~  344 (366)
T 2cdc_A          270 RN-GVLGLFGFSTS-GSVPLDYKTLQEIVHTNKTIIGLVNGQ---KPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDE  344 (366)
T ss_dssp             EE-EEEEECSCCCS-CEEEEEHHHHHHHHHTTCEEEECCCCC---HHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCH
T ss_pred             cC-CEEEEEecCCC-CccccChhhhHHHHhcCcEEEEecCCC---HHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHH
Confidence            99 99999997543 235566666   788999999986432   46799999999999776    77888899999999


Q ss_pred             HHHHHH--HhcCCeeEEEEeeC
Q 025101          238 NSAFDL--LIKGKCLRCVIWMG  257 (258)
Q Consensus       238 ~~a~~~--~~~~~~~k~vi~~~  257 (258)
                      ++||+.  ++.+...|+|++++
T Consensus       345 ~~A~~~l~~~~~~~gKvvi~~~  366 (366)
T 2cdc_A          345 KELLKVLREKEHGEIKIRILWE  366 (366)
T ss_dssp             HHHHHHHHCCCTTCCEEEEECC
T ss_pred             HHHHHHHhhhcCCceEEEEecC
Confidence            999999  56444449999874

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=9.3e-36  Score=246.52  Aligned_cols=239  Identities=16%  Similarity=0.196  Sum_probs=187.6

Q ss_pred             CCccccCCCCceeeeec------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhh--hhcCCCCCC-EE
Q 025101            5 QTSRFKDLRGETIHHFV------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TV   75 (258)
Q Consensus         5 ~~~~~~~~~G~~v~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~g~-~v   75 (258)
                      ++..|+  +||+|+...      ..|+|+||+++|++.++++|+++++++|+++++++.|||.++.  ...++++|+ +|
T Consensus        76 ~v~~~~--vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~V  153 (328)
T 1xa0_A           76 QHPRFR--EGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPV  153 (328)
T ss_dssp             CSSSCC--TTCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCE
T ss_pred             CCCCCC--CCCEEEEccccCCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceE
Confidence            456787  999998542      3599999999999999999999999999999999999998764  346788886 99


Q ss_pred             EEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChh
Q 025101           76 VIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS  154 (258)
Q Consensus        76 lI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~  154 (258)
                      ||+|+ |++|++++|+++..|+ +|+++++++++.++++++|+++++|+++   .+ .+.+++.+++++|+||||+|++.
T Consensus       154 lV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~---~~-~~~~~~~~~~~~d~vid~~g~~~  228 (328)
T 1xa0_A          154 LVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKEVLARED---VM-AERIRPLDKQRWAAAVDPVGGRT  228 (328)
T ss_dssp             EESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSEEEECC-------------CCSCCEEEEEECSTTTT
T ss_pred             EEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCcEEEecCC---cH-HHHHHHhcCCcccEEEECCcHHH
Confidence            99997 9999999999999999 8999999999999999999999999876   33 33455555458999999999865


Q ss_pred             hHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC---CCcHHHHHHHHHcCCCCCCcccccc
Q 025101          155 LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHE  231 (258)
Q Consensus       155 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~  231 (258)
                       ++.++++++++ |+++.+|...+ ...+++...++.|++++.|+.......   .+.++++++++.++ ++  + ++++
T Consensus       229 -~~~~~~~l~~~-G~~v~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g-l~--~-~~~~  301 (328)
T 1xa0_A          229 -LATVLSRMRYG-GAVAVSGLTGG-AEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLAGDLKPD-LE--R-IAQE  301 (328)
T ss_dssp             -HHHHHHTEEEE-EEEEECSCCSS-SCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHTTTCCC-HH--H-HEEE
T ss_pred             -HHHHHHhhccC-CEEEEEeecCC-CCCCCchhhhhhcCceEEEEecccCCHHHHHHHHHHHHHHHHcC-Cc--e-eeeE
Confidence             99999999999 99999997543 233455556778899999874221110   12344555555555 33  3 3589


Q ss_pred             cccccHHHHHHHHhcCCee-EEEEeeC
Q 025101          232 MKFEEINSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       232 ~~~~~~~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      |+++++++||+.+++++.. |+|++++
T Consensus       302 ~~l~~~~~A~~~~~~~~~~gKvvv~~~  328 (328)
T 1xa0_A          302 ISLAELPQALKRILRGELRGRTVVRLA  328 (328)
T ss_dssp             EEGGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred             eCHHHHHHHHHHHHcCCCCCeEEEEeC
Confidence            9999999999999888766 9999864

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=7.5e-36  Score=271.08  Aligned_cols=239  Identities=16%  Similarity=0.200  Sum_probs=202.8

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-C
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-G   81 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g   81 (258)
                      |+++..|+  +||+|+++ ..|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+ |
T Consensus       280 G~~V~~~~--vGDrV~~~-~~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaG  356 (795)
T 3slk_A          280 GPGVTGLA--PGDRVMGM-IPKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAG  356 (795)
T ss_dssp             CSSCCSSC--TTCEEEEC-CSSCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTB
T ss_pred             CCCCCcCC--CCCEEEEE-ecCCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCC
Confidence            56788898  99999976 45999999999999999999999999999999999999999988999999999999996 9


Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHH
Q 025101           82 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAY  160 (258)
Q Consensus        82 ~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~  160 (258)
                      ++|++++|++|.+|+ +|+++++++ |.++++ +|+++++|+++   .++.+.+++.+++ ++|+|||++|++. ++.++
T Consensus       357 gvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~~~~~---~~~~~~i~~~t~g~GvDvVld~~gg~~-~~~~l  429 (795)
T 3slk_A          357 GVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLASSRT---CDFEQQFLGATGGRGVDVVLNSLAGEF-ADASL  429 (795)
T ss_dssp             HHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEECSSS---STHHHHHHHHSCSSCCSEEEECCCTTT-THHHH
T ss_pred             HHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhheeecCC---hhHHHHHHHHcCCCCeEEEEECCCcHH-HHHHH
Confidence            999999999999999 899998665 666666 99999999998   8999999999988 9999999999876 89999


Q ss_pred             HhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC---CCCCcHHHHHHHHHcCCCCCCcccccccccccH
Q 025101          161 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL---KAKSDIPILLKRYMDKELELDKFVTHEMKFEEI  237 (258)
Q Consensus       161 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  237 (258)
                      ++++++ |+++.+|.........   .....+++++.+......   ...+.++++++++++|.++  ++++++|+++++
T Consensus       430 ~~l~~~-Gr~v~iG~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l~--p~~~~~~~l~~~  503 (795)
T 3slk_A          430 RMLPRG-GRFLELGKTDVRDPVE---VADAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVLE--PLPVTAWDVRQA  503 (795)
T ss_dssp             TSCTTC-EEEEECCSTTCCCHHH---HHHHSSSEEEEECCGGGGHHHHHHHHHHHHHHHHHTTSCC--CCCEEEEEGGGH
T ss_pred             HHhcCC-CEEEEeccccccCccc---ccccCCCCEEEEeeccccCHHHHHHHHHHHHHHHHcCCcC--CCcceeEcHHHH
Confidence            999999 9999999654322111   112335777766643211   1134688999999999665  457899999999


Q ss_pred             HHHHHHHhcCCee-EEEEeeC
Q 025101          238 NSAFDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       238 ~~a~~~~~~~~~~-k~vi~~~  257 (258)
                      ++||+.+++++.. |+|++++
T Consensus       504 ~eA~~~l~~g~~~GKvVl~~~  524 (795)
T 3slk_A          504 PEALRHLSQARHVGKLVLTMP  524 (795)
T ss_dssp             HHHHHHHHHTCCCBEEEEECC
T ss_pred             HHHHHHHhcCCccceEEEecC
Confidence            9999999998887 9999875

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=2.3e-36  Score=250.35  Aligned_cols=240  Identities=14%  Similarity=0.178  Sum_probs=191.9

Q ss_pred             CCccccCCCCceeeeec------cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhh--hhcCCCCCC-EE
Q 025101            5 QTSRFKDLRGETIHHFV------SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TV   75 (258)
Q Consensus         5 ~~~~~~~~~G~~v~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~g~-~v   75 (258)
                      ++..|+  +||+|+...      ..|+|+||+++|++.++++|+++++++|+++++++.|||.++.  ...++++|+ +|
T Consensus        77 ~v~~~~--vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~V  154 (330)
T 1tt7_A           77 NDPRFA--EGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSV  154 (330)
T ss_dssp             SSTTCC--TTCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCE
T ss_pred             CCCCCC--CCCEEEEcccccCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceE
Confidence            456787  999998542      3599999999999999999999999999999999999998764  346788886 99


Q ss_pred             EEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChh
Q 025101           76 VIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS  154 (258)
Q Consensus        76 lI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~  154 (258)
                      ||+|+ |++|++++|+++.+|+ +|+++++++++.++++++|+++++|+++   .+ .+.+++.+++++|++|||+|++.
T Consensus       155 lV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~v~~~~~---~~-~~~~~~~~~~~~d~vid~~g~~~  229 (330)
T 1tt7_A          155 LVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED---VY-DGTLKALSKQQWQGAVDPVGGKQ  229 (330)
T ss_dssp             EEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH---HC-SSCCCSSCCCCEEEEEESCCTHH
T ss_pred             EEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEECCC---ch-HHHHHHhhcCCccEEEECCcHHH
Confidence            99997 9999999999999999 8999999999999999999999998654   21 11223333348999999999965


Q ss_pred             hHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCC---CCcHHHHHHHHHcCCCCCCcccccc
Q 025101          155 LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHE  231 (258)
Q Consensus       155 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~  231 (258)
                       ++.++++++++ |+++.+|...+ ...+++...++.|++++.|+.......   .+.++++++++.+|.+  +++++++
T Consensus       230 -~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~i~~~  304 (330)
T 1tt7_A          230 -LASLLSKIQYG-GSVAVSGLTGG-GEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQL--LTIVDRE  304 (330)
T ss_dssp             -HHHHHTTEEEE-EEEEECCCSSC-SCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCCSCS--TTSEEEE
T ss_pred             -HHHHHHhhcCC-CEEEEEecCCC-CccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhcCCc--ccccceE
Confidence             99999999999 99999997643 334556566788899999984221110   1234555556667754  4667899


Q ss_pred             cccccHHHHHHHHhcCCee-EEEEee
Q 025101          232 MKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       232 ~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      |+++++++||+.+++++.. |+|+++
T Consensus       305 ~~l~~~~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          305 VSLEETPGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             ECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred             EcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            9999999999999888766 999864

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=5.8e-35  Score=245.83  Aligned_cols=239  Identities=16%  Similarity=0.208  Sum_probs=194.0

Q ss_pred             CCCCccccCCCCceeeeecc---ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcC----CCCCCEE
Q 025101            3 RDQTSRFKDLRGETIHHFVS---VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN----VEVGSTV   75 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~----~~~g~~v   75 (258)
                      |+++..|+  +||+|++..+   .|+|+||+++|++.++++|+++++++|+++++++.|||+++.+..+    +++|++|
T Consensus       110 G~~V~~~~--vGDrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~V  187 (375)
T 2vn8_A          110 GLDVKYFK--PGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRV  187 (375)
T ss_dssp             CTTCCSCC--TTCEEEEECCTTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEE
T ss_pred             CCCCCCCC--CCCEEEEecCCCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEE
Confidence            56778888  9999997653   6999999999999999999999999999999999999999877788    8999999


Q ss_pred             EEEc-cCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCCh-
Q 025101           76 VIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA-  153 (258)
Q Consensus        76 lI~G-~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~-  153 (258)
                      ||+| +|++|++++|+++..|+ +|++++ ++++.++++++|++.++|+++   +++.+.+.+.  +++|+||||+|.+ 
T Consensus       188 lV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~~~~---~~~~~~~~~~--~g~D~vid~~g~~~  260 (375)
T 2vn8_A          188 LILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRKLGADDVIDYKS---GSVEEQLKSL--KPFDFILDNVGGST  260 (375)
T ss_dssp             EEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS---SCHHHHHHTS--CCBSEEEESSCTTH
T ss_pred             EEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHHcCCCEEEECCc---hHHHHHHhhc--CCCCEEEECCCChh
Confidence            9999 59999999999999999 899988 678999999999999999987   7787777653  3799999999988 


Q ss_pred             hhHHHHHHhhhcCCceEEEecccCCCCcee---ech------HHHHh-------cCceEEecccCCCCCCCcHHHHHHHH
Q 025101          154 SLVQEAYACCRKGWGKTIVLGVDQPGSQLS---LSS------FEVLH-------SGKILMGSLFGGLKAKSDIPILLKRY  217 (258)
Q Consensus       154 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~---~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (258)
                      .++..++++++++ |+++.+|..... ...   ++.      ..++.       ++..+.+....  ...+.++++++++
T Consensus       261 ~~~~~~~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~l~  336 (375)
T 2vn8_A          261 ETWAPDFLKKWSG-ATYVTLVTPFLL-NMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFM--ASGPCLDDIAELV  336 (375)
T ss_dssp             HHHGGGGBCSSSC-CEEEESCCSHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCCC--CCHHHHHHHHHHH
T ss_pred             hhhHHHHHhhcCC-cEEEEeCCCccc-ccccccccchhheeehhhccccccccccCcceEEEEeC--CCHHHHHHHHHHH
Confidence            4568899999999 999999854321 100   000      11222       34444333211  1235679999999


Q ss_pred             HcCCCCCCcccccccccccHHHHHHHHhcCCee-EEEEee
Q 025101          218 MDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       218 ~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      .+|+++  ++++++|+++++++||+.+++++.. |+|+++
T Consensus       337 ~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          337 DAGKIR--PVIEQTFPFSKVPEAFLKVERGHARGKTVINV  374 (375)
T ss_dssp             HTTSCC--CCEEEEEEGGGHHHHHHHHHHCCCSSEEEEEC
T ss_pred             HCCCcc--cCcCeEECHHHHHHHHHHHHcCCCCCeEEEEe
Confidence            999764  6688999999999999999888765 999976

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=1.1e-34  Score=242.69  Aligned_cols=242  Identities=17%  Similarity=0.240  Sum_probs=202.0

Q ss_pred             CCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCC-----CccchhhcchhhhhhhhhhhhhcCCCCC--CEEEE
Q 025101            5 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV-----PPNRACLLSCGVSTGVGAAWRTANVEVG--STVVI   77 (258)
Q Consensus         5 ~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~-----~~~~aa~~~~~~~ta~~~l~~~~~~~~g--~~vlI   77 (258)
                      ++..|+  +||+|+++  .|+|+||+++|++.++++|+++     +++ +++++.++.|||+++.+..++++|  ++|||
T Consensus        92 ~v~~~~--vGdrV~~~--~G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI  166 (357)
T 2zb4_A           92 KHTNLT--KGDFVTSF--YWPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVV  166 (357)
T ss_dssp             CSTTCC--TTCEEEEE--EEESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEE
T ss_pred             CCCCCC--CCCEEEec--CCCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEE
Confidence            456787  99999976  3789999999999999999998     555 677888999999998788999999  99999


Q ss_pred             Ecc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhh
Q 025101           78 FGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASL  155 (258)
Q Consensus        78 ~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~  155 (258)
                      +|+ |++|++++|+++..|+.+|+++++++++.+.+++ +|++.++|+.+   +++.+.+.+.+++++|++|||+|... 
T Consensus       167 ~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~~~~~~~~~~~~d~vi~~~G~~~-  242 (357)
T 2zb4_A          167 SGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK---DNVAEQLRESCPAGVDVYFDNVGGNI-  242 (357)
T ss_dssp             SSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTT---SCHHHHHHHHCTTCEEEEEESCCHHH-
T ss_pred             ECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCc---hHHHHHHHHhcCCCCCEEEECCCHHH-
Confidence            997 9999999999999998789999999999998887 99999999987   78888898887668999999999754 


Q ss_pred             HHHHHHhhhcCCceEEEecccCCC-Cceeec-------hHHHHhcCceEEecccCCCC--CCCcHHHHHHHHHcCCCCCC
Q 025101          156 VQEAYACCRKGWGKTIVLGVDQPG-SQLSLS-------SFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELD  225 (258)
Q Consensus       156 ~~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~  225 (258)
                      ++.++++++++ |+++.+|..... ...+++       ...++.+++++.++....+.  ..+.++++++++.+|++++.
T Consensus       243 ~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~  321 (357)
T 2zb4_A          243 SDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIK  321 (357)
T ss_dssp             HHHHHHTEEEE-EEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHhccC-cEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCc
Confidence            99999999999 999999965431 122221       14567789999998643211  13568899999999988776


Q ss_pred             cccccccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          226 KFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       226 ~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      ..  .+|+++++++||+.+++++.. |+|+++++
T Consensus       322 ~~--~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  353 (357)
T 2zb4_A          322 ET--VINGLENMGAAFQSMMTGGNIGKQIVCISE  353 (357)
T ss_dssp             EE--EEECGGGHHHHHHHHHTTCCSBEEEEECCC
T ss_pred             cc--eecCHHHHHHHHHHHHcCCCCceEEEEEec
Confidence            43  459999999999999988765 99998863

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=6.3e-35  Score=238.83  Aligned_cols=228  Identities=19%  Similarity=0.294  Sum_probs=188.4

Q ss_pred             CceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHH
Q 025101           14 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGAR   92 (258)
Q Consensus        14 G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~   92 (258)
                      ||+|+++...|+|+||+++|++.++++|+++++++++++++++.|||+++.+.. +++|++|||+|+ |++|++++|+++
T Consensus        69 GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~  147 (302)
T 1iz0_A           69 GRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVAR  147 (302)
T ss_dssp             TEEEEEECSSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHH
T ss_pred             CcEEEEecCCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHH
Confidence            899998777799999999999999999999999999999999999999987677 999999999997 999999999999


Q ss_pred             HcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEE
Q 025101           93 LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV  172 (258)
Q Consensus        93 ~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  172 (258)
                      ..|+ +|+++++++++.++++++|++.++|+++  .+++.+.+     +++|++|| +|... ++.++++++++ |+++.
T Consensus       148 ~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~--~~~~~~~~-----~~~d~vid-~g~~~-~~~~~~~l~~~-G~~v~  216 (302)
T 1iz0_A          148 AMGL-RVLAAASRPEKLALPLALGAEEAATYAE--VPERAKAW-----GGLDLVLE-VRGKE-VEESLGLLAHG-GRLVY  216 (302)
T ss_dssp             HTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGG--HHHHHHHT-----TSEEEEEE-CSCTT-HHHHHTTEEEE-EEEEE
T ss_pred             HCCC-EEEEEeCCHHHHHHHHhcCCCEEEECCc--chhHHHHh-----cCceEEEE-CCHHH-HHHHHHhhccC-CEEEE
Confidence            9999 9999999999999999999999888642  01233333     47999999 99854 99999999999 99999


Q ss_pred             ecccCCCCceeechHHHHhcCceEEecccCCC-CCCCcHHHHHH---HHHcCCCCCCcccccccccccHHHHHHHHhcCC
Q 025101          173 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL-KAKSDIPILLK---RYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  248 (258)
Q Consensus       173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~  248 (258)
                      +|..... ...++...++.+++++.++..+.+ ...+.++++++   ++.+|+++  +.++++|+++++++||+.+++++
T Consensus       217 ~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~  293 (302)
T 1iz0_A          217 IGAAEGE-VAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELR--PVVGPVFPFAEAEAAFRALLDRG  293 (302)
T ss_dssp             C--------CCCCTTHHHHTTCEEEECCHHHHTTCHHHHHHHHHHHGGGBTTTBC--CCEEEEEEGGGHHHHHHHTTCTT
T ss_pred             EeCCCCC-CCCcCHHHHHhCCCeEEEEeccchhhhHHHHHHHHhhhHHHHcCCcc--cccceEEcHHHHHHHHHHHHcCC
Confidence            9865432 223455567888999999864321 12456888999   99999664  56889999999999999998877


Q ss_pred             ee-EEEEee
Q 025101          249 CL-RCVIWM  256 (258)
Q Consensus       249 ~~-k~vi~~  256 (258)
                      .. |+++++
T Consensus       294 ~~gKvvv~~  302 (302)
T 1iz0_A          294 HTGKVVVRL  302 (302)
T ss_dssp             CCBEEEEEC
T ss_pred             CCceEEEeC
Confidence            66 999864

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=2.9e-34  Score=239.12  Aligned_cols=242  Identities=17%  Similarity=0.253  Sum_probs=197.9

Q ss_pred             CCCccccCCCCceeeeeccccceeeeEEEecce--EEEcCC---CCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE
Q 025101            4 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH--VVKVDP---TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF   78 (258)
Q Consensus         4 ~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~--~~~~p~---~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~   78 (258)
                      .++..|+  +||+|+++   |+|+||+++++..  ++++|+   +++++ ++++++++.|||+++.+..++++|++|||+
T Consensus        89 ~~v~~~~--vGdrV~~~---g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~  162 (345)
T 2j3h_A           89 SGHPDYK--KGDLLWGI---VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVS  162 (345)
T ss_dssp             ECSTTCC--TTCEEEEE---EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEES
T ss_pred             cCCCCCC--CCCEEEee---cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEE
Confidence            3556787  99999964   7899999999876  999996   35555 677888999999998788899999999999


Q ss_pred             cc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhH
Q 025101           79 GL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLV  156 (258)
Q Consensus        79 G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~  156 (258)
                      |+ |++|++++|+++..|+ +|+++++++++.+.++ ++|++.++|+.+  .+++.+.+++.+++++|++||++|.. .+
T Consensus       163 Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~~d~vi~~~g~~-~~  238 (345)
T 2j3h_A          163 AASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE--ESDLTAALKRCFPNGIDIYFENVGGK-ML  238 (345)
T ss_dssp             STTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCCSEEEETTS--CSCSHHHHHHHCTTCEEEEEESSCHH-HH
T ss_pred             CCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEecCC--HHHHHHHHHHHhCCCCcEEEECCCHH-HH
Confidence            97 9999999999999999 9999999999999998 799998998875  13677788877755899999999985 49


Q ss_pred             HHHHHhhhcCCceEEEecccCCC----CceeechHHHHhcCceEEecccCCCC--CCCcHHHHHHHHHcCCCCCCccccc
Q 025101          157 QEAYACCRKGWGKTIVLGVDQPG----SQLSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTH  230 (258)
Q Consensus       157 ~~~~~~l~~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~  230 (258)
                      +.++++++++ |+++.+|.....    ....++...++.+++++.|+....+.  ..+.++++++++.+|+++  +.+..
T Consensus       239 ~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~--~~~~~  315 (345)
T 2j3h_A          239 DAVLVNMNMH-GRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKIT--YVEDV  315 (345)
T ss_dssp             HHHHTTEEEE-EEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSC--CCEEE
T ss_pred             HHHHHHHhcC-CEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCc--Ccccc
Confidence            9999999999 999999865431    12334455677889999987644321  123488999999999766  45656


Q ss_pred             ccccccHHHHHHHHhcCCee-EEEEeeCC
Q 025101          231 EMKFEEINSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       231 ~~~~~~~~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      +|+++++++||+.+++++.. |+|+.+++
T Consensus       316 ~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  344 (345)
T 2j3h_A          316 ADGLEKAPEALVGLFHGKNVGKQVVVVAR  344 (345)
T ss_dssp             EESGGGSHHHHHHHHTTCCSSEEEEESSC
T ss_pred             cCCHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence            89999999999999988776 99998853

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=2.6e-35  Score=248.11  Aligned_cols=241  Identities=12%  Similarity=0.144  Sum_probs=192.6

Q ss_pred             CCCC-ccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE--c
Q 025101            3 RDQT-SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF--G   79 (258)
Q Consensus         3 ~~~~-~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~--G   79 (258)
                      |+++ ..|+  +||+|+++ ..|+|+||+++|++.++++|+++++++|+++++.+.|||+++ +... ++|++|||+  |
T Consensus       106 G~~v~~~~~--vGdrV~~~-~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag  180 (379)
T 3iup_A          106 GSSPAAQAL--MGKTVAAI-GGAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAA  180 (379)
T ss_dssp             CSSHHHHTT--TTCEEEEC-CSCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESST
T ss_pred             CCCcccCCC--CCCEEEec-CCCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCC
Confidence            4455 6787  99999965 469999999999999999999999999999999999999865 4444 899999999  5


Q ss_pred             cCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHH
Q 025101           80 LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQE  158 (258)
Q Consensus        80 ~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~  158 (258)
                      +|++|++++|+|+.+|+ +|++++++++|.++++++|+++++|+++   +++.+.+++.+++ ++|+||||+|++..++.
T Consensus       181 ~G~vG~~a~q~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~---~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~  256 (379)
T 3iup_A          181 ASNLGQMLNQICLKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAAS---PTFMQDLTEALVSTGATIAFDATGGGKLGGQ  256 (379)
T ss_dssp             TSHHHHHHHHHHHHHTC-CEEEEESSHHHHHHHHHTTCSCEEETTS---TTHHHHHHHHHHHHCCCEEEESCEEESHHHH
T ss_pred             CCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCcEEEeCCC---hHHHHHHHHHhcCCCceEEEECCCchhhHHH
Confidence            69999999999999999 8999999999999999999999999998   8999999999888 99999999998776788


Q ss_pred             HHHhhh-----cC----------CceEEEecccCCCCceeechHHHHhcCceEEecccCCCC---CCCc----HHHHHHH
Q 025101          159 AYACCR-----KG----------WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK---AKSD----IPILLKR  216 (258)
Q Consensus       159 ~~~~l~-----~~----------~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~  216 (258)
                      ++++++     ++          +|+++.+|...   ..+++...++.+++++.|+..+.+.   ..+.    +++++++
T Consensus       257 ~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~---~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~  333 (379)
T 3iup_A          257 ILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLD---TSPTEFNRNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAE  333 (379)
T ss_dssp             HHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSE---EEEEEECCCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHHhcchhhhccccceeecccccCceEEEecCCC---CCccccccccccceEEEEEEeeeecccCCHHHHHHHHHHHHHH
Confidence            888885     44          04444444322   1122233456678999887644321   1122    3445555


Q ss_pred             HHcCCCCCCcccccccccccH--HHHHHHHhcCCee-EEEEeeCC
Q 025101          217 YMDKELELDKFVTHEMKFEEI--NSAFDLLIKGKCL-RCVIWMGE  258 (258)
Q Consensus       217 ~~~g~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~-k~vi~~~~  258 (258)
                      +.+   .+.++++++|+++++  ++||+.+.+++.. |+||++++
T Consensus       334 ~~~---~l~~~i~~~~~l~~~~~~~A~~~l~~~~~~gKvVv~~~~  375 (379)
T 3iup_A          334 LKT---TFASHYSKEISLAEVLDLDMIAVYNKRATGEKYLINPNK  375 (379)
T ss_dssp             TTT---TTCCCCSEEEEHHHHTCHHHHHHHTTCCTTCCEEEETTT
T ss_pred             Hhc---cCCCcceEEecHHHhhhHHHHHHHhcCCCCceEEEeCCC
Confidence            555   356678899999999  9999999998776 99999863

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=2.4e-33  Score=232.50  Aligned_cols=240  Identities=19%  Similarity=0.230  Sum_probs=197.3

Q ss_pred             CCccccCCCCceeeeeccccceeeeEEEecceEEEcCCC----CCccc-hhhcchhhhhhhhhhhhhcCCCCCCEEEEEc
Q 025101            5 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT----VPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFG   79 (258)
Q Consensus         5 ~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~----~~~~~-aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G   79 (258)
                      ++..|+  +||+|++.   |+|+||+++|++.++++|++    +++++ +++++++++|||+++.+..++++|++|||+|
T Consensus        79 ~v~~~~--vGdrV~~~---g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~G  153 (333)
T 1v3u_A           79 KNSAFP--AGSIVLAQ---SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSA  153 (333)
T ss_dssp             SCTTSC--TTCEEEEC---CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEES
T ss_pred             CCCCCC--CCCEEEec---CceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEec
Confidence            456787  99999964   78999999999999999997    88887 5888889999999987888999999999999


Q ss_pred             c-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHH
Q 025101           80 L-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQE  158 (258)
Q Consensus        80 ~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~  158 (258)
                      + |++|++++|+++..|+ +|+++++++++.+.++++|++.++|..+  .+++.+.+.+.+++++|++||++|.+. +..
T Consensus       154 a~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~  229 (333)
T 1v3u_A          154 AAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT--VNSLEEALKKASPDGYDCYFDNVGGEF-LNT  229 (333)
T ss_dssp             TTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--CSCHHHHHHHHCTTCEEEEEESSCHHH-HHH
T ss_pred             CCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCcEEEecCC--HHHHHHHHHHHhCCCCeEEEECCChHH-HHH
Confidence            7 9999999999999999 9999999999999999999988888764  146777888777668999999999866 899


Q ss_pred             HHHhhhcCCceEEEecccCCCC----ce-eechHHHHhcCceEEecccCCCC---CCCcHHHHHHHHHcCCCCCCccccc
Q 025101          159 AYACCRKGWGKTIVLGVDQPGS----QL-SLSSFEVLHSGKILMGSLFGGLK---AKSDIPILLKRYMDKELELDKFVTH  230 (258)
Q Consensus       159 ~~~~l~~~~G~~v~~g~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~  230 (258)
                      ++++++++ |+++.+|......    .. ..+...++.+++++.|+..+.+.   ..+.++++++++.+|++++...+  
T Consensus       230 ~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~--  306 (333)
T 1v3u_A          230 VLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHV--  306 (333)
T ss_dssp             HHTTEEEE-EEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCEEE--
T ss_pred             HHHHHhcC-CEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCcccc--
Confidence            99999999 9999999654311    11 12455677889999998654321   13457789999999988776444  


Q ss_pred             ccccccHHHHHHHHhcCCee-EEEEee
Q 025101          231 EMKFEEINSAFDLLIKGKCL-RCVIWM  256 (258)
Q Consensus       231 ~~~~~~~~~a~~~~~~~~~~-k~vi~~  256 (258)
                      +++++++++||+.+++++.. |+|+++
T Consensus       307 ~~~l~~~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          307 TKGFENMPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             EECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             ccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            47999999999999887766 999874

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.97  E-value=1e-30  Score=259.29  Aligned_cols=236  Identities=18%  Similarity=0.224  Sum_probs=199.0

Q ss_pred             CCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHH
Q 025101           13 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGA   91 (258)
Q Consensus        13 ~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~   91 (258)
                      +||+|+++...|+|+||+++|++.++++|+++++++||++++++.|||+++....++++|++|||+|+ |++|++++|+|
T Consensus      1609 vGdrV~g~~~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlA 1688 (2512)
T 2vz8_A         1609 SGRRVMGMVPAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIA 1688 (2512)
T ss_dssp             TSCCEEEECSSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHH
T ss_pred             cCCEEEEeecCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHH
Confidence            79999998777999999999999999999999999999999999999999988899999999999986 99999999999


Q ss_pred             HHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcC
Q 025101           92 RLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKG  166 (258)
Q Consensus        92 ~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~  166 (258)
                      |..|+ +|++++++++|.+++++    +|+++++|+++   .++.+.+++.+++ ++|+|||++++.. ++.++++++++
T Consensus      1689 k~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~---~~~~~~i~~~t~g~GvDvVld~~g~~~-l~~~l~~L~~~ 1763 (2512)
T 2vz8_A         1689 LSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANSRD---TSFEQHVLRHTAGKGVDLVLNSLAEEK-LQASVRCLAQH 1763 (2512)
T ss_dssp             HHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEESSS---SHHHHHHHHTTTSCCEEEEEECCCHHH-HHHHHTTEEEE
T ss_pred             HHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecCCC---HHHHHHHHHhcCCCCceEEEECCCchH-HHHHHHhcCCC
Confidence            99999 99999999999999986    68899999988   8899999999988 9999999998554 99999999999


Q ss_pred             CceEEEecccCCCCceeechHHHHhcCceEEecccCCCC--CCCcHHHHHHHHH----cCCCCCCcccccccccccHHHH
Q 025101          167 WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYM----DKELELDKFVTHEMKFEEINSA  240 (258)
Q Consensus       167 ~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~a  240 (258)
                       |+++.+|.......... ...++.+++++.++......  ....++++++++.    +|.  +.++++++|+++++++|
T Consensus      1764 -Gr~V~iG~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~--l~p~i~~~f~l~ei~eA 1839 (2512)
T 2vz8_A         1764 -GRFLEIGKFDLSNNHAL-GMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGV--VQPLKCTVFPRTKVEAA 1839 (2512)
T ss_dssp             -EEEEECCCHHHHTTCEE-EGGGGGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTC--SCCCCEEEEESSTHHHH
T ss_pred             -cEEEEeecccccccCcc-cccccccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCC--cCCCcceEecHHHHHHH
Confidence             99999985432111111 23356779999987654321  1234666666654    553  44568899999999999


Q ss_pred             HHHHhcCCee-EEEEeeC
Q 025101          241 FDLLIKGKCL-RCVIWMG  257 (258)
Q Consensus       241 ~~~~~~~~~~-k~vi~~~  257 (258)
                      ++.+.+++.. |+|+.++
T Consensus      1840 ~~~l~~g~~~GKvVi~~~ 1857 (2512)
T 2vz8_A         1840 FRYMAQGKHIGKVVIQVR 1857 (2512)
T ss_dssp             HHHHHTTCCSSEEEEECS
T ss_pred             HHhhhccCccceEEEECC
Confidence            9999998877 9999874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.94  E-value=3.8e-26  Score=175.51  Aligned_cols=184  Identities=23%  Similarity=0.284  Sum_probs=139.9

Q ss_pred             ceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 025101           35 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  113 (258)
Q Consensus        35 ~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~  113 (258)
                      +.++++|+++++++|+++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4688999999999999999999999999877789999999999995 9999999999999999 9999999999999999


Q ss_pred             hcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhc
Q 025101          114 RFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS  192 (258)
Q Consensus       114 ~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~  192 (258)
                      ++|++.++|..+   +++.+.+.+.+.+ ++|++||+.|... ++.++++++++ |+++.+|........+++.. .+.+
T Consensus        81 ~~g~~~~~d~~~---~~~~~~~~~~~~~~~~D~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~  154 (198)
T 1pqw_A           81 RLGVEYVGDSRS---VDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPG-GRFIELGKKDVYADASLGLA-ALAK  154 (198)
T ss_dssp             TTCCSEEEETTC---STHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEE-EEEEECSCGGGTTTCEEEGG-GGTT
T ss_pred             HcCCCEEeeCCc---HHHHHHHHHHhCCCCCeEEEECCchHH-HHHHHHHhccC-CEEEEEcCCCCcCcCcCChh-HhcC
Confidence            999988888877   7788888887766 8999999998655 89999999999 99999997542222223322 3467


Q ss_pred             CceEEeccc------CCCCCCCcHHHHHHHHHcCCCCCC
Q 025101          193 GKILMGSLF------GGLKAKSDIPILLKRYMDKELELD  225 (258)
Q Consensus       193 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~  225 (258)
                      ++++.++..      +.....+.++++++++.+|++++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~  193 (198)
T 1pqw_A          155 SASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVL  193 (198)
T ss_dssp             TCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             CcEEEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCC
Confidence            888876432      111113568899999999977755

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.09  E-value=1.9e-10  Score=95.70  Aligned_cols=139  Identities=20%  Similarity=0.176  Sum_probs=96.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce--EEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +++|+|+|+|++|+++++.++.+|+ +|+++++++++.+.+++++...  +++...   +++.+.+.     ++|+||+|
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~DvVI~~  237 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVA-----EADLLIGA  237 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHH-----TCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCH---HHHHHHHc-----CCCEEEEC
Confidence            4899999999999999999999999 9999999999999988876543  444333   34444332     69999999


Q ss_pred             cCChhh------HHHHHHhhhcCCceEEEecccCCCC-----ceeechHHHHhcCceEEecccCC--C------C-CCCc
Q 025101          150 VGLASL------VQEAYACCRKGWGKTIVLGVDQPGS-----QLSLSSFEVLHSGKILMGSLFGG--L------K-AKSD  209 (258)
Q Consensus       150 ~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~------~-~~~~  209 (258)
                      ++.+..      ....++.++++ |.++.++...+..     ..+++...+..+++++.+...-.  .      . .+..
T Consensus       238 ~~~~~~~~~~li~~~~~~~~~~g-~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~  316 (361)
T 1pjc_A          238 VLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNST  316 (361)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHH
T ss_pred             CCcCCCCCCeecCHHHHhhCCCC-CEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHH
Confidence            986542      56778899999 9999998654321     12233333445677776643110  0      0 0233


Q ss_pred             HHHHHHHHHcC
Q 025101          210 IPILLKRYMDK  220 (258)
Q Consensus       210 ~~~~~~~~~~g  220 (258)
                      ++.+++++.+|
T Consensus       317 ~~~l~~l~~~G  327 (361)
T 1pjc_A          317 LPYVVKLANQG  327 (361)
T ss_dssp             HHHHHHHHHHG
T ss_pred             HHHHHHHHhCC
Confidence            56777777777

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.05  E-value=2.6e-11  Score=102.43  Aligned_cols=141  Identities=13%  Similarity=0.166  Sum_probs=103.8

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhc---CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRI   99 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~---~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v   99 (258)
                      .|++++|+..+...++++|++++.++++.. .++.++|+++....   .-.+|++|+|+|+|++|.++++.++..|+.+|
T Consensus       116 ~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V  194 (404)
T 1gpj_A          116 LGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAV  194 (404)
T ss_dssp             HTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEE
T ss_pred             cCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEE
Confidence            377899999998889999988877776654 36777887653221   12579999999999999999999999998789


Q ss_pred             EEEcCCcchH-HHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHH--HHHHh--h--hcCCceEEE
Q 025101          100 IGVDVISEKF-EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQ--EAYAC--C--RKGWGKTIV  172 (258)
Q Consensus       100 ~~~~~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~--~~~~~--l--~~~~G~~v~  172 (258)
                      +++++++++. ++++++|++ +++.     .++.+.+.     ++|+|++|++.+..+.  ..+..  +  +++ |.+++
T Consensus       195 ~v~~r~~~ra~~la~~~g~~-~~~~-----~~l~~~l~-----~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~-~~~v~  262 (404)
T 1gpj_A          195 LVANRTYERAVELARDLGGE-AVRF-----DELVDHLA-----RSDVVVSATAAPHPVIHVDDVREALRKRDRR-SPILI  262 (404)
T ss_dssp             EEECSSHHHHHHHHHHHTCE-ECCG-----GGHHHHHH-----TCSEEEECCSSSSCCBCHHHHHHHHHHCSSC-CCEEE
T ss_pred             EEEeCCHHHHHHHHHHcCCc-eecH-----HhHHHHhc-----CCCEEEEccCCCCceecHHHHHHHHHhccCC-CCEEE
Confidence            9999999886 677888875 4433     23433331     6999999998754321  34554  3  556 77777


Q ss_pred             eccc
Q 025101          173 LGVD  176 (258)
Q Consensus       173 ~g~~  176 (258)
                      ++..
T Consensus       263 vdia  266 (404)
T 1gpj_A          263 IDIA  266 (404)
T ss_dssp             EECC
T ss_pred             EEcc
Confidence            7754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.98  E-value=2.5e-09  Score=89.71  Aligned_cols=147  Identities=21%  Similarity=0.256  Sum_probs=97.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCC-------------CC---CccHHH
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKN-------------CG---DKSVSQ  133 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~-------------~~---~~~~~~  133 (258)
                      ++++|+|+|+|.+|++++++++.+|+ +|+++++++++.+.++++|++.+ ++..+             .+   .....+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            68999999999999999999999999 89999999999999988998644 23211             00   000122


Q ss_pred             HHHHhcCCCCCEEEEec---CCh--hh-HHHHHHhhhcCCceEEEecccCCCC-ceeechHHHHhcCceEEecccCCCCC
Q 025101          134 IIIDMTDGGADYCFECV---GLA--SL-VQEAYACCRKGWGKTIVLGVDQPGS-QLSLSSFEVLHSGKILMGSLFGGLKA  206 (258)
Q Consensus       134 ~i~~~~~~~~d~v~d~~---g~~--~~-~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (258)
                      .+.+... ++|+||+|+   |.+  .. ....++.++++ +.++.++...+.. ....+...+..+++++.++...   .
T Consensus       250 ~l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g-~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~---p  324 (384)
T 1l7d_A          250 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNV---P  324 (384)
T ss_dssp             HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSG---G
T ss_pred             HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-CEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCC---c
Confidence            2444433 699999999   532  22 36788999999 9999998644321 1111222344567888886421   1


Q ss_pred             CCcHHHHHHHHHcCCCC
Q 025101          207 KSDIPILLKRYMDKELE  223 (258)
Q Consensus       207 ~~~~~~~~~~~~~g~~~  223 (258)
                      ......+.+++.++.++
T Consensus       325 ~~~~~~a~~l~~~~~~~  341 (384)
T 1l7d_A          325 SRVAADASPLFAKNLLN  341 (384)
T ss_dssp             GGGHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhHHH
Confidence            22345577777776444

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.95  E-value=2.8e-09  Score=89.18  Aligned_cols=98  Identities=19%  Similarity=0.207  Sum_probs=76.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +|++|+|+|+|.+|+++++.++.+|+ +|+++++++++.+.+++ +|+....+...  ..++.+.+.     ++|+|++|
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~--~~~l~~~l~-----~aDvVi~~  238 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSS--AYELEGAVK-----RADLVIGA  238 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECC--HHHHHHHHH-----HCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCC--HHHHHHHHc-----CCCEEEEC
Confidence            58899999999999999999999999 99999999999888877 77653222222  023333332     59999999


Q ss_pred             cCChhh------HHHHHHhhhcCCceEEEecccC
Q 025101          150 VGLASL------VQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       150 ~g~~~~------~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      ++.+..      ....++.++++ |.++.++...
T Consensus       239 ~~~p~~~t~~li~~~~l~~mk~g-~~iV~va~~~  271 (377)
T 2vhw_A          239 VLVPGAKAPKLVSNSLVAHMKPG-AVLVDIAIDQ  271 (377)
T ss_dssp             CCCTTSCCCCCBCHHHHTTSCTT-CEEEEGGGGT
T ss_pred             CCcCCCCCcceecHHHHhcCCCC-cEEEEEecCC
Confidence            986653      56788999999 9999998644

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.89  E-value=8.2e-09  Score=86.14  Aligned_cols=141  Identities=19%  Similarity=0.248  Sum_probs=87.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      ++++|+|+|+|++|+.+++.++.+|+ +|+++++++++.+.+++ +|.....+..+  .+++.+.+.     ++|+|++|
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~~~-----~~DvVi~~  236 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTAT--EANIKKSVQ-----HADLLIGA  236 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEECC--HHHHHHHHH-----HCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecCC--HHHHHHHHh-----CCCEEEEC
Confidence            46899999999999999999999999 99999999999888766 77653333322  023333332     59999999


Q ss_pred             cCChhh------HHHHHHhhhcCCceEEEecccCCCC-----ceeechHHHHhcCceEEecccCC--------C-CCCCc
Q 025101          150 VGLASL------VQEAYACCRKGWGKTIVLGVDQPGS-----QLSLSSFEVLHSGKILMGSLFGG--------L-KAKSD  209 (258)
Q Consensus       150 ~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~  209 (258)
                      ++.+..      ....++.++++ |.++.++...+..     +.+++...+..+++++.+...-.        . ..+..
T Consensus       237 ~g~~~~~~~~li~~~~l~~mk~g-g~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~  315 (369)
T 2eez_A          237 VLVPGAKAPKLVTRDMLSLMKEG-AVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQT  315 (369)
T ss_dssp             CC-------CCSCHHHHTTSCTT-CEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHH
T ss_pred             CCCCccccchhHHHHHHHhhcCC-CEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHH
Confidence            986531      46788899998 9999998654321     11222223344567766543110        0 01234


Q ss_pred             HHHHHHHHHcC
Q 025101          210 IPILLKRYMDK  220 (258)
Q Consensus       210 ~~~~~~~~~~g  220 (258)
                      ++.+++++.+|
T Consensus       316 ~~~l~~l~~~g  326 (369)
T 2eez_A          316 LPYVLKLAEKG  326 (369)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhcC
Confidence            56677777766

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.81  E-value=3.2e-08  Score=83.31  Aligned_cols=126  Identities=17%  Similarity=0.213  Sum_probs=84.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEE-cCCCC--C--------CccH----HHHH
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNC--G--------DKSV----SQII  135 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~--~--------~~~~----~~~i  135 (258)
                      ++++|+|+|+|.+|++++++++.+|+ +|+++++++++.+.++++|+..+. +..+.  .        .+++    .+.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            58899999999999999999999999 899999999999999999986431 21100  0        0111    1123


Q ss_pred             HHhcCCCCCEEEEecCCh-----hhH-HHHHHhhhcCCceEEEecccCCCCceeec--hH-HHHhcCceEEecc
Q 025101          136 IDMTDGGADYCFECVGLA-----SLV-QEAYACCRKGWGKTIVLGVDQPGSQLSLS--SF-EVLHSGKILMGSL  200 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g~~-----~~~-~~~~~~l~~~~G~~v~~g~~~~~~~~~~~--~~-~~~~~~~~~~~~~  200 (258)
                      .+... ++|+||++++.+     ..+ ...++.++++ +.++.++...+. .++..  .. .+..+++++.++.
T Consensus       250 ~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g-~vIVdva~~~Gg-~v~~~~~~~p~~~~~gv~i~g~~  320 (401)
T 1x13_A          250 AAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAG-SVIVDLAAQNGG-NCEYTVPGEIFTTENGVKVIGYT  320 (401)
T ss_dssp             HHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGTC-SBTTCCTTSEEECTTSCEEECCS
T ss_pred             HHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-cEEEEEcCCCCC-CcCcccCCCceEEECCEEEEeeC
Confidence            33322 599999995322     222 5788999999 999999965332 12221  11 1345688888864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.77  E-value=3.3e-08  Score=84.80  Aligned_cols=173  Identities=16%  Similarity=0.134  Sum_probs=110.9

Q ss_pred             hhhhhhhhhhhhc-CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHH
Q 025101           55 GVSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQ  133 (258)
Q Consensus        55 ~~~ta~~~l~~~~-~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~  133 (258)
                      ...++++++.+.. ...+|++|+|+|.|.+|+.+++.++.+|+ +|+++++++++.+.++++|++ +++        +.+
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~~--------l~e  325 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VVT--------VEE  325 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECC--------HHH
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Eec--------HHH
Confidence            3345566543222 26789999999999999999999999999 999999999998888899985 321        222


Q ss_pred             HHHHhcCCCCCEEEEecCChhhHH-HHHHhhhcCCceEEEecccCCCCceeechHHHHhcCc---eEEecccCCCCCCCc
Q 025101          134 IIIDMTDGGADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK---ILMGSLFGGLKAKSD  209 (258)
Q Consensus       134 ~i~~~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  209 (258)
                      .+     .++|+|++++|....+. ..++.++++ |.++.+|....    .++...+..+.+   ++.+... .+. ...
T Consensus       326 ~l-----~~aDvVi~atgt~~~i~~~~l~~mk~g-gilvnvG~~~~----eId~~aL~~~aL~~~~I~~~ld-v~~-~~~  393 (494)
T 3ce6_A          326 AI-----GDADIVVTATGNKDIIMLEHIKAMKDH-AILGNIGHFDN----EIDMAGLERSGATRVNVKPQVD-LWT-FGD  393 (494)
T ss_dssp             HG-----GGCSEEEECSSSSCSBCHHHHHHSCTT-CEEEECSSSGG----GBCHHHHHHTTCEEEEEETTEE-EEE-CTT
T ss_pred             HH-----hCCCEEEECCCCHHHHHHHHHHhcCCC-cEEEEeCCCCC----ccCHHHHHHhhhccceEEEEEE-Eee-cCC
Confidence            22     16999999999876565 788999999 99999985421    244444544444   4443321 000 001


Q ss_pred             HHHHHHHHHcCCCC----CCc----ccccccccccHHHHHHHHhcCCee
Q 025101          210 IPILLKRYMDKELE----LDK----FVTHEMKFEEINSAFDLLIKGKCL  250 (258)
Q Consensus       210 ~~~~~~~~~~g~~~----~~~----~~~~~~~~~~~~~a~~~~~~~~~~  250 (258)
                      +...+.++.+|++.    ..+    ..++.| .+++.++++.+.+++..
T Consensus       394 ~~~~l~LL~~grlvnL~~~TPH~a~~~~~s~-~~qa~~ai~~~~~g~~~  441 (494)
T 3ce6_A          394 TGRSIIVLSEGRLLNLGNATGHPSFVMSNSF-ANQTIAQIELWTKNDEY  441 (494)
T ss_dssp             TCCEEEEEGGGSCHHHHHSCCSCHHHHHHHH-HHHHHHHHHHHHTGGGC
T ss_pred             cchHHHHHhCCCEEeccCCCCCccccchHHH-HHHHHHHHHHHHcCCCC
Confidence            11122344445442    111    222334 56788888887776544

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.66  E-value=2.5e-08  Score=78.40  Aligned_cols=98  Identities=16%  Similarity=0.207  Sum_probs=73.4

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-c--eEEcCCCCCCccHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-T--EFVNSKNCGDKSVSQII  135 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~--~vi~~~~~~~~~~~~~i  135 (258)
                      +.....+.++++||.+|+| .|..+..+++. +. +|++++.+++..+.+++    .+. .  .++.. +     +.   
T Consensus        83 ~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d-----~~---  150 (248)
T 2yvl_A           83 IALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNV-D-----FK---  150 (248)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECS-C-----TT---
T ss_pred             HHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEc-C-----hh---
Confidence            3466778899999999998 59999999988 66 99999999998888765    343 1  12211 1     11   


Q ss_pred             HHhc-CC-CCCEEEEecCCh-hhHHHHHHhhhcCCceEEEec
Q 025101          136 IDMT-DG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       136 ~~~~-~~-~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g  174 (258)
                       +.. .+ ++|+|+...+.+ ..+..+.+.++++ |+++...
T Consensus       151 -~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  190 (248)
T 2yvl_A          151 -DAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEG-APVGFLL  190 (248)
T ss_dssp             -TSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTT-CEEEEEE
T ss_pred             -hcccCCCcccEEEECCcCHHHHHHHHHHHcCCC-CEEEEEe
Confidence             111 23 799999888765 6689999999999 9998775

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.51  E-value=7.2e-07  Score=64.90  Aligned_cols=93  Identities=20%  Similarity=0.162  Sum_probs=65.6

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceEEcCCCCCCccHHHHHHHhcCCCCCE
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~  145 (258)
                      ....++++|+|+|+|.+|+.+++.++..|. +|+++++++++.+.++ +.|... +....   .+ .+.+.+..-.++|+
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~-~~~d~---~~-~~~l~~~~~~~ad~   87 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFT-VVGDA---AE-FETLKECGMEKADM   87 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEE-EESCT---TS-HHHHHTTTGGGCSE
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcE-EEecC---CC-HHHHHHcCcccCCE
Confidence            344578899999999999999999999999 9999999999888777 677643 32221   11 12233321127999


Q ss_pred             EEEecCChhhHHHHHHhhhc
Q 025101          146 CFECVGLASLVQEAYACCRK  165 (258)
Q Consensus       146 v~d~~g~~~~~~~~~~~l~~  165 (258)
                      ||.+++.......+...++.
T Consensus        88 Vi~~~~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           88 VFAFTNDDSTNFFISMNARY  107 (155)
T ss_dssp             EEECSSCHHHHHHHHHHHHH
T ss_pred             EEEEeCCcHHHHHHHHHHHH
Confidence            99999987755555566554

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.50  E-value=5.3e-08  Score=70.08  Aligned_cols=107  Identities=12%  Similarity=0.105  Sum_probs=75.6

Q ss_pred             hhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhcCCceEEcCCCCCCccHHH
Q 025101           55 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQ  133 (258)
Q Consensus        55 ~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~  133 (258)
                      +.+++++++ +......+++|+|+|+|.+|.+.++.++..|+ +|+++++++++.+. ++++|.. +....     ++.+
T Consensus         5 ~~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~-~~~~~-----~~~~   76 (144)
T 3oj0_A            5 KVSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYE-YVLIN-----DIDS   76 (144)
T ss_dssp             CCSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCE-EEECS-----CHHH
T ss_pred             cccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCc-eEeec-----CHHH
Confidence            345566664 34444459999999999999999999888899 69999999988754 5667753 33332     3444


Q ss_pred             HHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          134 IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       134 ~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      .+.     ++|+|+.|++....+. ....++++ +.++.++..
T Consensus        77 ~~~-----~~Divi~at~~~~~~~-~~~~l~~g-~~vid~~~p  112 (144)
T 3oj0_A           77 LIK-----NNDVIITATSSKTPIV-EERSLMPG-KLFIDLGNP  112 (144)
T ss_dssp             HHH-----TCSEEEECSCCSSCSB-CGGGCCTT-CEEEECCSS
T ss_pred             Hhc-----CCCEEEEeCCCCCcEe-eHHHcCCC-CEEEEccCC
Confidence            332     6999999999764222 23667887 888888753

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.50  E-value=4.1e-07  Score=75.87  Aligned_cols=124  Identities=17%  Similarity=0.244  Sum_probs=83.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCC--------------C-CCCccH----
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK--------------N-CGDKSV----  131 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~--------------~-~~~~~~----  131 (258)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|+++++++++.+.++++|++.+ ...              + ++ +++    
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~-~~~~~~~~d~~~~~~ya~e~s-~~~~~~~  265 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFI-AVEDEEFKAAETAGGYAKEMS-GEYQVKQ  265 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEEC-CCCC------------------CHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCcee-ecccccccccccccchhhhcc-hhhhhhh
Confidence            57899999999999999999999999 99999999999999999987522 110              0 00 011    


Q ss_pred             HHHHHHhcCCCCCEEEEecCChh------hHHHHHHhhhcCCceEEEecccCCCCceee--chHHHHhcCceEEecc
Q 025101          132 SQIIIDMTDGGADYCFECVGLAS------LVQEAYACCRKGWGKTIVLGVDQPGSQLSL--SSFEVLHSGKILMGSL  200 (258)
Q Consensus       132 ~~~i~~~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~  200 (258)
                      .+.+.+... +.|+||.|+..+.      .-..+++.++++ ..++.++...+. .+..  +...+..+++++.+..
T Consensus       266 ~~~l~e~l~-~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~G-sVIVDvA~d~GG-~~e~t~~~~~~~~~GV~~~gv~  339 (405)
T 4dio_A          266 AALVAEHIA-KQDIVITTALIPGRPAPRLVTREMLDSMKPG-SVVVDLAVERGG-NIEGAEAGKVTEVGGVRIVGHL  339 (405)
T ss_dssp             HHHHHHHHH-TCSEEEECCCCSSSCCCCCBCHHHHTTSCTT-CEEEETTGGGTC-SBTTCCTTEEEEETTEEEEECS
T ss_pred             HhHHHHHhc-CCCEEEECCcCCCCCCCEEecHHHHhcCCCC-CEEEEEeCCCCC-CccccCCCCeEEECCEEEEEeC
Confidence            112222222 6999999864221      246889999999 999999864432 2211  1111223567776664

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.50  E-value=8.7e-07  Score=73.31  Aligned_cols=104  Identities=18%  Similarity=0.211  Sum_probs=75.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCC--C---------CCCc---cHHHHHH
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK--N---------CGDK---SVSQIII  136 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~--~---------~~~~---~~~~~i~  136 (258)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.++++|++. ++..  .         ++.+   ...+.+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~-~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQW-LDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEE-CCCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE-EeccccccccccchhhhhHHHHhhhHHHHH
Confidence            67899999999999999999999999 8999999999999999999752 2210  0         0000   0112233


Q ss_pred             HhcCCCCCEEEEecCCh------hhHHHHHHhhhcCCceEEEecccCC
Q 025101          137 DMTDGGADYCFECVGLA------SLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~~------~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      +... ++|+||.++..+      ..-...++.++++ +.++.++...+
T Consensus       261 e~l~-~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpG-sVIVDvA~d~G  306 (381)
T 3p2y_A          261 DAIT-KFDIVITTALVPGRPAPRLVTAAAATGMQPG-SVVVDLAGETG  306 (381)
T ss_dssp             HHHT-TCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGT
T ss_pred             HHHh-cCCEEEECCCCCCcccceeecHHHHhcCCCC-cEEEEEeCCCC
Confidence            3222 799999986332      1246889999999 99999986654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.43  E-value=2.1e-06  Score=59.04  Aligned_cols=94  Identities=18%  Similarity=0.172  Sum_probs=65.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      .+.+|+|+|+|.+|..+++.+...| . +|+++++++++.+.+...+...+ .|..+   .   +.+.+... ++|+||+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~~~~~~d~~~---~---~~~~~~~~-~~d~vi~   75 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGVATKQVDAKD---E---AGLAKALG-GFDAVIS   75 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTCEEEECCTTC---H---HHHHHHTT-TCSEEEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCCcEEEecCCC---H---HHHHHHHc-CCCEEEE
Confidence            3568999999999999999999999 6 89999999998888876665432 23322   2   33433333 6999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEe
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      +++..........+...+ .+++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~g-~~~~~~   99 (118)
T 3ic5_A           76 AAPFFLTPIIAKAAKAAG-AHYFDL   99 (118)
T ss_dssp             CSCGGGHHHHHHHHHHTT-CEEECC
T ss_pred             CCCchhhHHHHHHHHHhC-CCEEEe
Confidence            998766444444444454 555544

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.39  E-value=1e-06  Score=70.52  Aligned_cols=97  Identities=13%  Similarity=0.159  Sum_probs=72.5

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCce--EEcCCCCCCccHHHHHHHhc
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~~~~  139 (258)
                      .+++++|++||.+|+|+.|..++.+++..|+ +|++++.+++..+.+++    .|.+.  ++..+      ..    ++.
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gD------a~----~l~  185 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGD------ET----VID  185 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESC------GG----GGG
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECc------hh----hCC
Confidence            4678999999999999877888888887898 99999999999888765    35432  22221      11    122


Q ss_pred             CCCCCEEEEecCCh---hhHHHHHHhhhcCCceEEEec
Q 025101          140 DGGADYCFECVGLA---SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .+.||+||.....+   ..++.+.+.|+|+ |+++...
T Consensus       186 d~~FDvV~~~a~~~d~~~~l~el~r~LkPG-G~Lvv~~  222 (298)
T 3fpf_A          186 GLEFDVLMVAALAEPKRRVFRNIHRYVDTE-TRIIYRT  222 (298)
T ss_dssp             GCCCSEEEECTTCSCHHHHHHHHHHHCCTT-CEEEEEE
T ss_pred             CCCcCEEEECCCccCHHHHHHHHHHHcCCC-cEEEEEc
Confidence            34899999655433   4588999999999 9998765

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.26  E-value=7.1e-06  Score=66.13  Aligned_cols=94  Identities=19%  Similarity=0.217  Sum_probs=72.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -+|++|+|+|.|.+|..+++.++.+|. +|++.+++.++.+.++++|+. .++.     .++.+    .. ...|+|+.+
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~-~~~~-----~~l~~----~l-~~aDvVi~~  220 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGME-PFHI-----SKAAQ----EL-RDVDVCINT  220 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSE-EEEG-----GGHHH----HT-TTCSEEEEC
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCe-ecCh-----hhHHH----Hh-cCCCEEEEC
Confidence            368999999999999999999999999 999999998887777778875 3322     12322    22 169999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ++....-...+..++++ +.++.++..
T Consensus       221 ~p~~~i~~~~l~~mk~~-~~lin~ar~  246 (293)
T 3d4o_A          221 IPALVVTANVLAEMPSH-TFVIDLASK  246 (293)
T ss_dssp             CSSCCBCHHHHHHSCTT-CEEEECSST
T ss_pred             CChHHhCHHHHHhcCCC-CEEEEecCC
Confidence            97644234567788998 999888753

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.25  E-value=5.6e-06  Score=69.32  Aligned_cols=101  Identities=18%  Similarity=0.257  Sum_probs=76.0

Q ss_pred             hhhhhhhcC-CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHh
Q 025101           60 VGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        60 ~~~l~~~~~-~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      +.++.+... .-.|++++|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +.        ++.+.+   
T Consensus       207 ~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~-v~--------~Leeal---  273 (435)
T 3gvp_A          207 LDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFR-LV--------KLNEVI---  273 (435)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC--------CHHHHT---
T ss_pred             HHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCE-ec--------cHHHHH---
Confidence            344433333 3479999999999999999999999999 899999988777666667753 21        222222   


Q ss_pred             cCCCCCEEEEecCChhhHH-HHHHhhhcCCceEEEeccc
Q 025101          139 TDGGADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       139 ~~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~  176 (258)
                       . ..|+|+.|.|....+. ..+..++++ +.++.+|..
T Consensus       274 -~-~ADIVi~atgt~~lI~~e~l~~MK~g-ailINvgrg  309 (435)
T 3gvp_A          274 -R-QVDIVITCTGNKNVVTREHLDRMKNS-CIVCNMGHS  309 (435)
T ss_dssp             -T-TCSEEEECSSCSCSBCHHHHHHSCTT-EEEEECSST
T ss_pred             -h-cCCEEEECCCCcccCCHHHHHhcCCC-cEEEEecCC
Confidence             2 6899999988766555 788999998 998888754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.21  E-value=2.1e-05  Score=58.66  Aligned_cols=95  Identities=16%  Similarity=0.222  Sum_probs=67.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCceEE-cCCCCCCccHHHHHHHhcCC-CCCEEEE
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDG-GADYCFE  148 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~-~~d~v~d  148 (258)
                      +++|+|+|+|.+|..+++.++.. |. +|+++++++++.+.+++.|...+. |..+   .   +.+.+.++- ++|+||.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~gd~~~---~---~~l~~~~~~~~ad~vi~  111 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISGDATD---P---DFWERILDTGHVKLVLL  111 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEECCTTC---H---HHHHTBCSCCCCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEcCCCC---H---HHHHhccCCCCCCEEEE
Confidence            67899999999999999999988 99 899999999999988888876443 3332   2   223333122 7999999


Q ss_pred             ecCChhhHHHHHHhhhcC--CceEEEe
Q 025101          149 CVGLASLVQEAYACCRKG--WGKTIVL  173 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~--~G~~v~~  173 (258)
                      ++++..........++..  ..+++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          112 AMPHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             eCCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            999866444444444443  0455543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.19  E-value=1.1e-05  Score=65.29  Aligned_cols=94  Identities=18%  Similarity=0.225  Sum_probs=72.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -.|++|+|+|.|.+|..+++.++.+|. +|++.+++.++.+.++++|+. +++.     .++    .+... +.|+|+.+
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~-~~~~-----~~l----~~~l~-~aDvVi~~  222 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV-PFHT-----DEL----KEHVK-DIDICINT  222 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE-EEEG-----GGH----HHHST-TCSEEEEC
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe-EEch-----hhH----HHHhh-CCCEEEEC
Confidence            368999999999999999999999999 999999998887777777764 3322     122    22222 69999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ++....-...+..++++ +.++.++..
T Consensus       223 ~p~~~i~~~~~~~mk~g-~~lin~a~g  248 (300)
T 2rir_A          223 IPSMILNQTVLSSMTPK-TLILDLASR  248 (300)
T ss_dssp             CSSCCBCHHHHTTSCTT-CEEEECSST
T ss_pred             CChhhhCHHHHHhCCCC-CEEEEEeCC
Confidence            98654234567788888 999988854

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=98.17  E-value=2.6e-05  Score=61.01  Aligned_cols=105  Identities=13%  Similarity=0.066  Sum_probs=67.4

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHH----HHHHhcCCCCCEE
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQ----IIIDMTDGGADYC  146 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~----~i~~~~~~~~d~v  146 (258)
                      +++|||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.+.+.....-.-+.++++-.+    .+.+.. |++|++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~-g~iDiL   79 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKL-QRIDVL   79 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            478999986 8999999999999999 999999999887766654433221111212233222    222333 279999


Q ss_pred             EEecCChh-------------------------hHHHHHHhhhcCCceEEEecccCC
Q 025101          147 FECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       147 ~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      +++.|...                         ..+.+...+...+|+++.+++...
T Consensus        80 VNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~  136 (247)
T 3ged_A           80 VNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRA  136 (247)
T ss_dssp             EECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            99887411                         233444555433399998876543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.14  E-value=1.2e-05  Score=63.99  Aligned_cols=101  Identities=24%  Similarity=0.244  Sum_probs=71.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhcCCceE---EcCCCCCCccHHH----HHHHhcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEF---VNSKNCGDKSVSQ----IIIDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~-~~~~g~~~v---i~~~~~~~~~~~~----~i~~~~~~  141 (258)
                      +|+.+||+|+ +++|.+.++.+...|+ +|+++++++++.+. ++++|....   .|-.+   ++-.+    .+.+.. |
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~---~~~v~~~~~~~~~~~-G  102 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSAN---LAELDRLYEKVKAEA-G  102 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTC---HHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCC---HHHHHHHHHHHHHHc-C
Confidence            6899999987 7999999999999999 99999999988765 456764322   23333   33332    333333 2


Q ss_pred             CCCEEEEecCChh-------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          142 GADYCFECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       142 ~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      ++|+++++.|...                         ..+.++..++.+ |+++.+++..
T Consensus       103 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~-G~IInisS~~  162 (273)
T 4fgs_A          103 RIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG-SSVVLTGSTA  162 (273)
T ss_dssp             CEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-EEEEEECCGG
T ss_pred             CCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CeEEEEeehh
Confidence            7999999887521                         345667777787 9999887644

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.12  E-value=4.9e-05  Score=54.05  Aligned_cols=95  Identities=12%  Similarity=0.121  Sum_probs=67.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEE-cCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      ..++|+|+|.|.+|..+++.++..|. +|+++++++++.+.+++.|...+. |..+   ++   .+.+..-.++|.++-+
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~gd~~~---~~---~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVLGNAAN---EE---IMQLAHLECAKWLILT   78 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEESCTTS---HH---HHHHTTGGGCSEEEEC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEECCCCC---HH---HHHhcCcccCCEEEEE
Confidence            34689999999999999999999999 899999999999999888875443 2222   22   2333211279999999


Q ss_pred             cCChhhHH---HHHHhhhcCCceEEEe
Q 025101          150 VGLASLVQ---EAYACCRKGWGKTIVL  173 (258)
Q Consensus       150 ~g~~~~~~---~~~~~l~~~~G~~v~~  173 (258)
                      +++.....   ...+.+.+. .+++.-
T Consensus        79 ~~~~~~n~~~~~~a~~~~~~-~~iiar  104 (140)
T 3fwz_A           79 IPNGYEAGEIVASARAKNPD-IEIIAR  104 (140)
T ss_dssp             CSCHHHHHHHHHHHHHHCSS-SEEEEE
T ss_pred             CCChHHHHHHHHHHHHHCCC-CeEEEE
Confidence            99765222   233444555 665543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.04  E-value=1.4e-05  Score=68.18  Aligned_cols=91  Identities=16%  Similarity=0.220  Sum_probs=71.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -.|++++|+|+|++|..+++.++..|+ +|+++++++.+.+.+...|++ +.+..+            . ...+|+++++
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~lee------------~-~~~aDvVi~a  327 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTLED------------V-VSEADIFVTT  327 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCGGG------------T-TTTCSEEEEC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCHHH------------H-HHhcCEEEeC
Confidence            478999999999999999999999999 999999998887777777753 222111            1 1169999999


Q ss_pred             cCChhhHH-HHHHhhhcCCceEEEeccc
Q 025101          150 VGLASLVQ-EAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       150 ~g~~~~~~-~~~~~l~~~~G~~v~~g~~  176 (258)
                      .|....+. ..+..++++ +.++.+|..
T Consensus       328 tG~~~vl~~e~l~~mk~g-aiVvNaG~~  354 (488)
T 3ond_A          328 TGNKDIIMLDHMKKMKNN-AIVCNIGHF  354 (488)
T ss_dssp             SSCSCSBCHHHHTTSCTT-EEEEESSST
T ss_pred             CCChhhhhHHHHHhcCCC-eEEEEcCCC
Confidence            99766554 478888998 888888753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.00  E-value=6.4e-05  Score=53.41  Aligned_cols=76  Identities=14%  Similarity=0.237  Sum_probs=57.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEE-cCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      ..+++|+|+|.+|..+++.+...|. +|+++++++++.+.+++.|...+. |..+   ++   .+.+..-.++|.||.++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~~gd~~~---~~---~l~~~~~~~~d~vi~~~   78 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAVIADPTD---ES---FYRSLDLEGVSAVLITG   78 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEECCTTC---HH---HHHHSCCTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEEECCCCC---HH---HHHhCCcccCCEEEEec
Confidence            4689999999999999999999999 899999999999888887764332 3222   22   33333222799999999


Q ss_pred             CChh
Q 025101          151 GLAS  154 (258)
Q Consensus       151 g~~~  154 (258)
                      ++..
T Consensus        79 ~~~~   82 (141)
T 3llv_A           79 SDDE   82 (141)
T ss_dssp             SCHH
T ss_pred             CCHH
Confidence            9754

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.98  E-value=3.4e-05  Score=60.07  Aligned_cols=103  Identities=17%  Similarity=0.198  Sum_probs=69.3

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      =+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+..+.-.+. ...|-.+   ++..+.+-+.. +++|+++
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~-g~iDiLV   83 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIRREELDITD---SQRLQRLFEAL-PRLDVLV   83 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEEEEECCTTC---HHHHHHHHHHC-SCCSEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeEEEEecCCC---HHHHHHHHHhc-CCCCEEE
Confidence            36999999986 8999999999999999 999999988766533221111 1233333   44444444443 3799999


Q ss_pred             EecCChh-----------------------hHHHHHHhhh-cCCceEEEecccCC
Q 025101          148 ECVGLAS-----------------------LVQEAYACCR-KGWGKTIVLGVDQP  178 (258)
Q Consensus       148 d~~g~~~-----------------------~~~~~~~~l~-~~~G~~v~~g~~~~  178 (258)
                      ++.|...                       ..+.++..++ .+ |+++.+++..+
T Consensus        84 NNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~  137 (242)
T 4b79_A           84 NNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG-GSILNIASMYS  137 (242)
T ss_dssp             ECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-EEEEEECCGGG
T ss_pred             ECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeeccc
Confidence            9887411                       2334455554 46 99999986543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.98  E-value=3.8e-05  Score=64.49  Aligned_cols=92  Identities=17%  Similarity=0.145  Sum_probs=71.1

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      .-.|++++|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +.        ++.+.+.     ..|+|+.
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~-vv--------~LeElL~-----~ADIVv~  308 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFE-VV--------TLDDAAS-----TADIVVT  308 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE-EC--------CHHHHGG-----GCSEEEE
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCce-ec--------cHHHHHh-----hCCEEEE
Confidence            3579999999999999999999999999 999999888766556566653 22        2222221     5899999


Q ss_pred             ecCChhhH-HHHHHhhhcCCceEEEeccc
Q 025101          149 CVGLASLV-QEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       149 ~~g~~~~~-~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ++|....+ ...+..++++ +.++.+|-.
T Consensus       309 atgt~~lI~~e~l~~MK~G-AILINvGRg  336 (464)
T 3n58_A          309 TTGNKDVITIDHMRKMKDM-CIVGNIGHF  336 (464)
T ss_dssp             CCSSSSSBCHHHHHHSCTT-EEEEECSSS
T ss_pred             CCCCccccCHHHHhcCCCC-eEEEEcCCC
Confidence            99876544 5788899998 888888743

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.97  E-value=0.00014  Score=57.19  Aligned_cols=106  Identities=14%  Similarity=0.178  Sum_probs=68.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceEEcCCCCCCccHHH----HHHHhcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQ----IIIDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~----~i~~~~~~  141 (258)
                      +|+.+||+|+ +++|.+.++.+...|+ +|+++++++++.+.+    ++.|.....-.-+.++++-.+    .+.+.. |
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~-G   83 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY-S   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            5899999987 7999999998888999 999999998876543    345643222112212233333    233333 2


Q ss_pred             CCCEEEEecCCh--h------------------------hHHHHHHhhhc-CCceEEEecccCC
Q 025101          142 GADYCFECVGLA--S------------------------LVQEAYACCRK-GWGKTIVLGVDQP  178 (258)
Q Consensus       142 ~~d~v~d~~g~~--~------------------------~~~~~~~~l~~-~~G~~v~~g~~~~  178 (258)
                      ++|+++++.|..  .                        ..+.++..+.. ++|+++.+++..+
T Consensus        84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g  147 (254)
T 4fn4_A           84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAG  147 (254)
T ss_dssp             CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhh
Confidence            799999988731  0                        23455555532 2389999886543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.96  E-value=4.7e-05  Score=59.99  Aligned_cols=101  Identities=17%  Similarity=0.177  Sum_probs=67.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCce-E--EcCCCCCCccHHH----HHHHhcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-F--VNSKNCGDKSVSQ----IIIDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~-v--i~~~~~~~~~~~~----~i~~~~~~  141 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +++... .  .|..+   .+-.+    .+.+.. +
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~-g   81 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIAD---LNEIAVLGAAAGQTL-G   81 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC---HHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC---HHHHHHHHHHHHHHh-C
Confidence            5789999986 8999999999888999 9999999988876553 455332 2  23333   33222    222222 2


Q ss_pred             CCCEEEEecCChh-------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          142 GADYCFECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       142 ~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      ++|+++++.|...                         ..+.+...++.+ |+++.+++..
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~  141 (255)
T 4eso_A           82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREG-GSIVFTSSVA  141 (255)
T ss_dssp             SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCGG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CEEEEECChh
Confidence            7999999887421                         233444555667 9999887644

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.95  E-value=6.6e-05  Score=63.05  Aligned_cols=110  Identities=17%  Similarity=0.206  Sum_probs=77.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +.        ++.+.+    . ..|+|+.+
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~-~~--------sL~eal----~-~ADVVilt  273 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQ-VL--------LVEDVV----E-EAHIFVTT  273 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC--------CHHHHT----T-TCSEEEEC
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCe-ec--------CHHHHH----h-hCCEEEEC
Confidence            368999999999999999999999999 999999988777777777753 21        222222    2 59999998


Q ss_pred             cCChhhHH-HHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEec
Q 025101          150 VGLASLVQ-EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  199 (258)
Q Consensus       150 ~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  199 (258)
                      .+....+. ..+..++++ ..++.+|-.    ...++...+..+..+..++
T Consensus       274 ~gt~~iI~~e~l~~MK~g-AIVINvgRg----~vEID~~~L~~~~~~~~~i  319 (436)
T 3h9u_A          274 TGNDDIITSEHFPRMRDD-AIVCNIGHF----DTEIQVAWLKANAKERVEV  319 (436)
T ss_dssp             SSCSCSBCTTTGGGCCTT-EEEEECSSS----GGGBCHHHHHHHCSEEEEE
T ss_pred             CCCcCccCHHHHhhcCCC-cEEEEeCCC----CCccCHHHHHhhcCceEee
Confidence            88655444 667888888 888877622    2234444554444444333

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.95  E-value=0.0002  Score=55.98  Aligned_cols=82  Identities=22%  Similarity=0.182  Sum_probs=54.9

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceEEcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           69 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        69 ~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      ..+++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. ++.....+..-+..+.+..+.+.+.. +++|++
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~id~l   88 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKT-SNLDIL   88 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTC-SCCSEE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhc-CCCCEE
Confidence            457889999986 8999999998888899 9999999988876553 34433222222211233333333322 379999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |.+.|.
T Consensus        89 i~~Ag~   94 (249)
T 3f9i_A           89 VCNAGI   94 (249)
T ss_dssp             EECCC-
T ss_pred             EECCCC
Confidence            998873

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.94  E-value=4.2e-05  Score=54.33  Aligned_cols=77  Identities=16%  Similarity=0.309  Sum_probs=54.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      ++++|+|+|+|.+|..+++.++..|. +|+++++++++.+.+++.+.. ++..+.   .+ .+.+.+..-+++|+|+.++
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~-~~~~d~---~~-~~~l~~~~~~~~d~vi~~~   78 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATH-AVIANA---TE-ENELLSLGIRNFEYVIVAI   78 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSE-EEECCT---TC-HHHHHTTTGGGCSEEEECC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCE-EEEeCC---CC-HHHHHhcCCCCCCEEEECC
Confidence            35679999999999999999999998 899999988877766666653 332211   11 2233332112799999999


Q ss_pred             CCh
Q 025101          151 GLA  153 (258)
Q Consensus       151 g~~  153 (258)
                      +..
T Consensus        79 ~~~   81 (144)
T 2hmt_A           79 GAN   81 (144)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            975

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.92  E-value=0.00012  Score=57.61  Aligned_cols=106  Identities=23%  Similarity=0.272  Sum_probs=68.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceEEcCCCCCCccHHH-HHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQ-IIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~-~i~~~~~--~~  142 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+    ++.|.....-.-+.++++-.+ .+.+...  |+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            6899999986 8999999999999999 999999998776543    344543222222222233332 2333222  27


Q ss_pred             CCEEEEecCChh-------------------------hHHHHHHhhh---cCCceEEEecccCC
Q 025101          143 ADYCFECVGLAS-------------------------LVQEAYACCR---KGWGKTIVLGVDQP  178 (258)
Q Consensus       143 ~d~v~d~~g~~~-------------------------~~~~~~~~l~---~~~G~~v~~g~~~~  178 (258)
                      +|+++++.|...                         ..+.++..+.   .+ |+++.+++...
T Consensus        87 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~-G~IVnisS~~~  149 (255)
T 4g81_D           87 VDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSG-GKIINIGSLTS  149 (255)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEEECCGGG
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCC-CEEEEEeehhh
Confidence            999999987521                         2345556552   34 89999986543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.89  E-value=0.00012  Score=56.79  Aligned_cols=100  Identities=13%  Similarity=0.090  Sum_probs=66.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      .|++|||+|+ |.+|..+++.+...|+ +|++++|++++.+.+.+.++..++..+-      .+.+.+..+ ++|+||.+
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~Dl------~~~~~~~~~-~~D~vi~~   91 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVVANL------EEDFSHAFA-SIDAVVFA   91 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEECCT------TSCCGGGGT-TCSEEEEC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEEccc------HHHHHHHHc-CCCEEEEC
Confidence            5789999997 9999999999988999 9999999999988877766612332211      122333332 79999999


Q ss_pred             cCChh-------------hHHHHHHhhhc-CCceEEEecccCC
Q 025101          150 VGLAS-------------LVQEAYACCRK-GWGKTIVLGVDQP  178 (258)
Q Consensus       150 ~g~~~-------------~~~~~~~~l~~-~~G~~v~~g~~~~  178 (258)
                      .|...             .....++.++. +.++++.++....
T Consensus        92 ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  134 (236)
T 3e8x_A           92 AGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT  134 (236)
T ss_dssp             CCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred             CCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            88531             12233333332 2278998886544

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.87  E-value=0.00012  Score=57.61  Aligned_cols=102  Identities=12%  Similarity=0.034  Sum_probs=66.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH---HhcCCc-e--EEcCCCCCCccHH----HHHHHhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG---KRFGVT-E--FVNSKNCGDKSVS----QIIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~---~~~g~~-~--vi~~~~~~~~~~~----~~i~~~~  139 (258)
                      +|+.+||+|+ +++|.+.++.+...|+ +|+++++++++.+.+   ++.+.. .  ..|-.+   ++-.    +.+.+..
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQD---DAQCRDAVAQTIATF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTC---HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCC---HHHHHHHHHHHHHHh
Confidence            5899999986 8999999988888999 999999988765544   334432 1  223333   3322    2333323


Q ss_pred             CCCCCEEEEecCChh------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          140 DGGADYCFECVGLAS------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       140 ~~~~d~v~d~~g~~~------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                       |++|+++++.|...                        ..+.++..++.++|+++.+++..
T Consensus        82 -G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~  142 (258)
T 4gkb_A           82 -GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKT  142 (258)
T ss_dssp             -SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTH
T ss_pred             -CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehh
Confidence             37999999987411                        23445555654339999887543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.87  E-value=0.00021  Score=55.49  Aligned_cols=78  Identities=13%  Similarity=0.248  Sum_probs=51.8

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCce---EEcCCCCCCccHHHHHHHhcC--CCCC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE---FVNSKNCGDKSVSQIIIDMTD--GGAD  144 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~---vi~~~~~~~~~~~~~i~~~~~--~~~d  144 (258)
                      ++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +++...   ..|..+  .+++.+.+.+...  +++|
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~id   79 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAH--HEDVDVAFAAAVEWGGLPE   79 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTS--HHHHHHHHHHHHHHHCSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCC--HHHHHHHHHHHHHhcCCCc
Confidence            578999987 8999999988888999 8999999988776543 343221   123333  1222222222211  3799


Q ss_pred             EEEEecCC
Q 025101          145 YCFECVGL  152 (258)
Q Consensus       145 ~v~d~~g~  152 (258)
                      +++++.|.
T Consensus        80 ~lvnnAg~   87 (235)
T 3l6e_A           80 LVLHCAGT   87 (235)
T ss_dssp             EEEEECCC
T ss_pred             EEEECCCC
Confidence            99998874

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.86  E-value=3.3e-05  Score=58.73  Aligned_cols=99  Identities=17%  Similarity=0.203  Sum_probs=70.1

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~  136 (258)
                      .....+.++++||-+|+|. |..++.+++. +. +|++++.+++..+.+++    +|..   .++..+-   .+   .+.
T Consensus        48 l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~---~~~  118 (204)
T 3njr_A           48 LAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA---PA---ALA  118 (204)
T ss_dssp             HHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT---TG---GGT
T ss_pred             HHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch---hh---hcc
Confidence            3556778999999999986 8888888887 77 99999999998887754    4543   2332222   11   111


Q ss_pred             HhcCCCCCEEEEecCC-hhhHHHHHHhhhcCCceEEEec
Q 025101          137 DMTDGGADYCFECVGL-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .  .+.+|+|+...+. ...+..+.+.|+|+ |+++...
T Consensus       119 ~--~~~~D~v~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  154 (204)
T 3njr_A          119 D--LPLPEAVFIGGGGSQALYDRLWEWLAPG-TRIVANA  154 (204)
T ss_dssp             T--SCCCSEEEECSCCCHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             c--CCCCCEEEECCcccHHHHHHHHHhcCCC-cEEEEEe
Confidence            1  1279999965443 22688999999999 9998765

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.85  E-value=0.00019  Score=56.47  Aligned_cols=78  Identities=19%  Similarity=0.251  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC-c-eE--EcCCCCCCccHHH---HHH
Q 025101           71 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV-T-EF--VNSKNCGDKSVSQ---III  136 (258)
Q Consensus        71 ~g~~vlI~G~-g--~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~-~-~v--i~~~~~~~~~~~~---~i~  136 (258)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|++++++++..+.+.    +.+. . ..  .|-.+  +++..+   .+.
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   81 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQS--DEEVINGFEQIG   81 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCC--HHHHHHHHHHHH
Confidence            5899999996 4  899999999889999 9999999987765543    3442 2 22  23333  122222   233


Q ss_pred             HhcCCCCCEEEEecCC
Q 025101          137 DMTDGGADYCFECVGL  152 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~  152 (258)
                      +.. |.+|+++++.|.
T Consensus        82 ~~~-G~iD~lvnnAg~   96 (256)
T 4fs3_A           82 KDV-GNIDGVYHSIAF   96 (256)
T ss_dssp             HHH-CCCSEEEECCCC
T ss_pred             HHh-CCCCEEEecccc
Confidence            332 379999998773

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.79  E-value=0.00033  Score=55.77  Aligned_cols=78  Identities=22%  Similarity=0.244  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceE---EcCCCCCCccHH-HHHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF---VNSKNCGDKSVS-QIIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v---i~~~~~~~~~~~-~~i~~~~~--~~  142 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++....   .|-.+   .+-. +.+.+...  ++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~~g~  101 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSS---AKDAESMVEKTTAKWGR  101 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTC---HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCC---HHHHHHHHHHHHHHcCC
Confidence            5789999986 8999999999888999 999999998876654 44553322   23333   3322 22222211  27


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|++.|.
T Consensus       102 iD~lv~nAg~  111 (277)
T 4dqx_A          102 VDVLVNNAGF  111 (277)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999998883

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.78  E-value=0.00032  Score=55.21  Aligned_cols=78  Identities=23%  Similarity=0.284  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce-E--EcCCCCCCcc-HHHHHHHhc--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKS-VSQIIIDMT--DGG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v--i~~~~~~~~~-~~~~i~~~~--~~~  142 (258)
                      +++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ ++++... .  .|..+   ++ +.+.+.+..  -++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~~g~   82 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTR---QDSIDAAIAATVEHAGG   82 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC---HHHHHHHHHHHHHHSSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCC---HHHHHHHHHHHHHHcCC
Confidence            5789999986 8999999998888999 899999998876554 4455332 2  23333   33 222222221  127


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|++.|.
T Consensus        83 id~lv~~Ag~   92 (259)
T 4e6p_A           83 LDILVNNAAL   92 (259)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999998874

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.75  E-value=0.00023  Score=56.68  Aligned_cols=77  Identities=21%  Similarity=0.348  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc-eE--EcCCCCCCccHH-H---HHHHhcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EF--VNSKNCGDKSVS-Q---IIIDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--i~~~~~~~~~~~-~---~i~~~~~~  141 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.. ..  .|..+   ++-. +   .+.+.. +
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~~-g  102 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSD---EQQIIAMVDACVAAF-G  102 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTC---HHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCC---HHHHHHHHHHHHHHc-C
Confidence            5789999986 8999999998888899 999999998876654 445532 22  23333   3322 2   222222 2


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|+++++.|.
T Consensus       103 ~iD~lvnnAg~  113 (277)
T 3gvc_A          103 GVDKLVANAGV  113 (277)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.75  E-value=0.00046  Score=53.25  Aligned_cols=76  Identities=13%  Similarity=0.092  Sum_probs=52.0

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCc---eEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT---EFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~---~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      +++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+ ++..   ...|..+   .+-.+.+.+.....+|+++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLAS---HQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTTC---HHHHHHHHHSCSSCCSEEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCCC---HHHHHHHHHHHhhcCCEEE
Confidence            36899987 8999999999988999 89999999888776543 4422   1223333   4444444333333469999


Q ss_pred             EecCC
Q 025101          148 ECVGL  152 (258)
Q Consensus       148 d~~g~  152 (258)
                      ++.|.
T Consensus        78 ~~Ag~   82 (230)
T 3guy_A           78 HSAGS   82 (230)
T ss_dssp             ECCCC
T ss_pred             EeCCc
Confidence            98873

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.74  E-value=0.00035  Score=55.28  Aligned_cols=81  Identities=23%  Similarity=0.241  Sum_probs=53.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceEEcCCCCCCccHHHH-HHHhcC--CCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQI-IIDMTD--GGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~-i~~~~~--~~~d~  145 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++....+-.-+.++.+-.+. +.+...  +++|+
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDI  104 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999986 8999999999988999 999999998876654 4566432221112112332222 222211  27999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      +|++.|.
T Consensus       105 lvnnAg~  111 (266)
T 3grp_A          105 LVNNAGI  111 (266)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.72  E-value=0.00032  Score=55.45  Aligned_cols=78  Identities=21%  Similarity=0.299  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCceE---EcCCCCCCccHH-HHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSVS-QIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v---i~~~~~~~~~~~-~~i~~~~~-  140 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.|....   .|-.+   .+-. ..+.+... 
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~   78 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTD---RHSVAAFAQAAVDT   78 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCC---HHHHHHHHHHHHHH
Confidence            4688999987 8999999998888999 8999999988765442    2343222   23333   3322 22222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|+++++.|.
T Consensus        79 ~g~iD~lVnnAG~   91 (264)
T 3tfo_A           79 WGRIDVLVNNAGV   91 (264)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             279999998874

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.72  E-value=3.3e-05  Score=59.98  Aligned_cols=101  Identities=21%  Similarity=0.233  Sum_probs=70.6

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      .+...+.++++||.+|+| .|..+..+++..+. +|++++.+++..+.+++    .|...+ ....   .+..   ....
T Consensus        84 ~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~---~d~~---~~~~  154 (235)
T 1jg1_A           84 LEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNV-HVIL---GDGS---KGFP  154 (235)
T ss_dssp             HHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSE-EEEE---SCGG---GCCG
T ss_pred             HHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEE---CCcc---cCCC
Confidence            355578899999999998 68899999998774 99999999988877765    443322 1111   1121   1112


Q ss_pred             CC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          140 DG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .+ ++|+|+.+.........+.+.|+++ |+++..-
T Consensus       155 ~~~~fD~Ii~~~~~~~~~~~~~~~L~pg-G~lvi~~  189 (235)
T 1jg1_A          155 PKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIPV  189 (235)
T ss_dssp             GGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             CCCCccEEEECCcHHHHHHHHHHhcCCC-cEEEEEE
Confidence            22 5999998776555467888999999 9887654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.72  E-value=0.0003  Score=56.14  Aligned_cols=103  Identities=23%  Similarity=0.292  Sum_probs=64.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch-HH----HHHhcCCce-EE--cCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FE----IGKRFGVTE-FV--NSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~-~~----~~~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++ .+    .+++.|... ++  |..+  .+++...+.+... 
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV--VEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 8999999999988999 89999887654 22    233445332 22  3322  1222222222211 


Q ss_pred             -CCCCEEEEecCChh-------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          141 -GGADYCFECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       141 -~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                       +++|++|++.|...                         ..+.+...++.. |+++.+++..
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~  166 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSIT  166 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCGG
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEechh
Confidence             27999999887421                         123444555566 9999988643

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.72  E-value=0.00034  Score=56.13  Aligned_cols=100  Identities=19%  Similarity=0.142  Sum_probs=63.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchH-HH----HHhcCCceE-E--cCCCCCCccH-HH---HHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF-EI----GKRFGVTEF-V--NSKNCGDKSV-SQ---IIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~-~~----~~~~g~~~v-i--~~~~~~~~~~-~~---~i~~  137 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++. +.    +++.|.... +  |..+   ++- .+   .+.+
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~  121 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSD---EQHCKDIVQETVR  121 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTS---HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCC---HHHHHHHHHHHHH
Confidence            5789999986 8999999999988999 899998876532 22    233454322 2  3333   332 22   2222


Q ss_pred             hcCCCCCEEEEecCCh-----------h---------------hHHHHHHhhhcCCceEEEeccc
Q 025101          138 MTDGGADYCFECVGLA-----------S---------------LVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      .. +++|++|++.|..           .               ..+.++..++.+ |+++.+++.
T Consensus       122 ~~-g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~iv~isS~  184 (291)
T 3ijr_A          122 QL-GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQG-DVIINTASI  184 (291)
T ss_dssp             HH-SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTT-CEEEEECCT
T ss_pred             Hc-CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CEEEEEech
Confidence            22 2799999987631           0               233444555667 899888753

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.71  E-value=0.00045  Score=54.14  Aligned_cols=81  Identities=14%  Similarity=0.186  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceEEcCCCCCCcc-HHHHHHHhcC--CCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKS-VSQIIIDMTD--GGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~-~~~~i~~~~~--~~~d~  145 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++....+-.-+..+.+ +.+.+.+...  +.+|+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   83 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4688999987 8999999998888899 899999998776544 344533221111211233 2222222211  26999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      +|++.|.
T Consensus        84 lv~~Ag~   90 (253)
T 1hxh_A           84 LVNNAGI   90 (253)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9998874

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.71  E-value=0.00015  Score=53.33  Aligned_cols=103  Identities=19%  Similarity=0.187  Sum_probs=70.7

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eEEcCCCCCCccHHHHHHHh
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~  138 (258)
                      .....+.++++||.+|+|. |..+..+++..+..+|++++.+++..+.+++    .|.. .++-..+     ..+.+.. 
T Consensus        18 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d-----~~~~~~~-   90 (178)
T 3hm2_A           18 ISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQG-----APRAFDD-   90 (178)
T ss_dssp             HHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECC-----TTGGGGG-
T ss_pred             HHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecc-----hHhhhhc-
Confidence            3455678899999999985 8899999987743499999999988887764    4543 3321111     1111111 


Q ss_pred             cCCCCCEEEEecCC--hhhHHHHHHhhhcCCceEEEec
Q 025101          139 TDGGADYCFECVGL--ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ~~~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..+.+|+|+.....  ...+..+.+.++|+ |+++...
T Consensus        91 ~~~~~D~i~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  127 (178)
T 3hm2_A           91 VPDNPDVIFIGGGLTAPGVFAAAWKRLPVG-GRLVANA  127 (178)
T ss_dssp             CCSCCSEEEECC-TTCTTHHHHHHHTCCTT-CEEEEEE
T ss_pred             cCCCCCEEEECCcccHHHHHHHHHHhcCCC-CEEEEEe
Confidence            11479999965543  33689999999999 9998665

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.71  E-value=0.00046  Score=52.11  Aligned_cols=101  Identities=14%  Similarity=0.119  Sum_probs=70.7

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc--eEEcCCCCCCccHHHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~  137 (258)
                      .....+.++++||.+|+|. |..++.+++..+..+|++++.+++..+.+++    .|.+  .++..+-   .+   .+..
T Consensus        33 l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~---~~~~  105 (204)
T 3e05_A           33 LSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFA---PE---GLDD  105 (204)
T ss_dssp             HHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCT---TT---TCTT
T ss_pred             HHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCCh---hh---hhhc
Confidence            3556788999999999985 8888999988644499999999998887765    3432  2222211   11   1111


Q ss_pred             hcCCCCCEEEEecC---ChhhHHHHHHhhhcCCceEEEec
Q 025101          138 MTDGGADYCFECVG---LASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                        .+.+|+|+....   ....+..+.+.|+|+ |+++...
T Consensus       106 --~~~~D~i~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  142 (204)
T 3e05_A          106 --LPDPDRVFIGGSGGMLEEIIDAVDRRLKSE-GVIVLNA  142 (204)
T ss_dssp             --SCCCSEEEESCCTTCHHHHHHHHHHHCCTT-CEEEEEE
T ss_pred             --CCCCCEEEECCCCcCHHHHHHHHHHhcCCC-eEEEEEe
Confidence              126999997654   234578899999999 9998765

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.71  E-value=0.00045  Score=55.71  Aligned_cols=78  Identities=26%  Similarity=0.349  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCce---EEcCCCCCCcc-HHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE---FVNSKNCGDKS-VSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~-~~~~i~~~~~-  140 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.+...   ..|..+   .+ +.+.+.+... 
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRH---LDEMVRLADEAFRL  105 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCC---HHHHHHHHHHHHHh
Confidence            6789999987 8999999998888999 8999999988765542    234322   223333   33 2222222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|++.|.
T Consensus       106 ~g~id~lvnnAg~  118 (301)
T 3tjr_A          106 LGGVDVVFSNAGI  118 (301)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             CCCCCEEEECCCc
Confidence             279999999883

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.70  E-value=9.2e-05  Score=58.61  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=69.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      .++.+||.+|+|. |..+..+++.. |. +|++++.+++..+.+++.+.. .++..+.   .++     ....+.+|+|+
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~-----~~~~~~fD~v~  153 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRL-----PFSDTSMDAII  153 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT---TSC-----SBCTTCEEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcch---hhC-----CCCCCceeEEE
Confidence            5788999999987 99999999976 66 999999999999998876533 2322221   111     11223799999


Q ss_pred             EecCChhhHHHHHHhhhcCCceEEEecc
Q 025101          148 ECVGLASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       148 d~~g~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      .... ...+..+.+.|+|+ |+++....
T Consensus       154 ~~~~-~~~l~~~~~~L~pg-G~l~~~~~  179 (269)
T 1p91_A          154 RIYA-PCKAEELARVVKPG-GWVITATP  179 (269)
T ss_dssp             EESC-CCCHHHHHHHEEEE-EEEEEEEE
T ss_pred             EeCC-hhhHHHHHHhcCCC-cEEEEEEc
Confidence            6444 44599999999999 99987753

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.69  E-value=0.00063  Score=53.66  Aligned_cols=103  Identities=18%  Similarity=0.275  Sum_probs=64.7

Q ss_pred             CCCEEEEEcc-CH--HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-c-eE--EcCCCCCCccHHHHHHHhc
Q 025101           71 VGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-T-EF--VNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~--~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~-~v--i~~~~~~~~~~~~~i~~~~  139 (258)
                      +|+++||+|+ |.  +|.++++.+...|+ +|++++++++..+.+++    .+. . .+  .|..+  .+++.+.+.+..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~   82 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTN--DAEIETCFASIK   82 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSS--SHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCC--HHHHHHHHHHHH
Confidence            5789999986 55  99999888888899 89999988765544433    332 1 22  23333  123333333322


Q ss_pred             C--CCCCEEEEecCChh-----------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          140 D--GGADYCFECVGLAS-----------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       140 ~--~~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      .  +.+|+++.+.|...                             ..+.+...++++ |+++.++...
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-g~iv~isS~~  150 (266)
T 3oig_A           83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEG-GSIVTLTYLG  150 (266)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTC-EEEEEEECGG
T ss_pred             HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCC-ceEEEEeccc
Confidence            2  26999999877310                             223445556667 9999888644

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.69  E-value=0.00056  Score=53.99  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc-eE--EcCCCCCCcc-HHHHHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EF--VNSKNCGDKS-VSQIIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--i~~~~~~~~~-~~~~i~~~~~--~~  142 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.. ..  .|..+   .+ +.+.+.+...  +.
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~~g~   80 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD---PKAVEAVFAEALEEFGR   80 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS---HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC---HHHHHHHHHHHHHHcCC
Confidence            4689999987 8999999999888999 999999998876654 334422 12  23333   33 2222222211  26


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|++.|.
T Consensus        81 iD~lvnnAg~   90 (263)
T 2a4k_A           81 LHGVAHFAGV   90 (263)
T ss_dssp             CCEEEEGGGG
T ss_pred             CcEEEECCCC
Confidence            9999998873

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.69  E-value=4.7e-05  Score=58.98  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=69.1

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHh
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~  138 (258)
                      .....++++||.+|+| .|..+..+++..+..+|++++.+++..+.+++    .|..   .++..      +..+.+...
T Consensus        49 ~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~------d~~~~~~~~  121 (233)
T 2gpy_A           49 LLKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG------DALQLGEKL  121 (233)
T ss_dssp             HHHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS------CGGGSHHHH
T ss_pred             HHhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC------CHHHHHHhc
Confidence            3445678899999998 58888899998733399999999988887765    3532   22221      222222222


Q ss_pred             c-CCCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          139 T-DGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ~-~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      . .+.||+|+.....   ...+..+.+.++|+ |.++...
T Consensus       122 ~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  160 (233)
T 2gpy_A          122 ELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPG-GLILSDN  160 (233)
T ss_dssp             TTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEE-EEEEEET
T ss_pred             ccCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence            2 2379999965543   34578889999999 9988754

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.69  E-value=0.00046  Score=54.59  Aligned_cols=79  Identities=19%  Similarity=0.339  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----h-cCCce-E--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----R-FGVTE-F--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~-~g~~~-v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    + .+... .  .|..+  .+++.+.+.+... 
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE--PDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--TTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            5789999986 8999999999988999 8999999987765432    1 34322 2  23333  1233322222221 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|++.|.
T Consensus        96 ~g~id~lv~nAg~  108 (266)
T 4egf_A           96 FGGLDVLVNNAGI  108 (266)
T ss_dssp             HTSCSEEEEECCC
T ss_pred             cCCCCEEEECCCc
Confidence             279999998874

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.69  E-value=0.00051  Score=54.33  Aligned_cols=80  Identities=20%  Similarity=0.177  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---hc--CCceEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K---RF--GVTEFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~---~~--g~~~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +   +.  +.......-+.++++..+.+.+.. +++
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-g~i   86 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKY-PKV   86 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHC-CCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhc-CCC
Confidence            5789999986 8999999998888999 999999998765443 2   22  221111111212244444444433 379


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |+++++.|.
T Consensus        87 d~lv~nAg~   95 (267)
T 3t4x_A           87 DILINNLGI   95 (267)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998874

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.69  E-value=0.00022  Score=57.24  Aligned_cols=80  Identities=25%  Similarity=0.192  Sum_probs=54.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +++....+-.-+.++.+-.+.+.+.. +++|++|+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~-~~iD~lv~   92 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGV-SGADVLIN   92 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTC-CCEEEEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhc-CCCCEEEE
Confidence            5789999986 8999999998888999 9999999988876554 35432211111211233333333322 47999999


Q ss_pred             ecCC
Q 025101          149 CVGL  152 (258)
Q Consensus       149 ~~g~  152 (258)
                      +.|.
T Consensus        93 nAg~   96 (291)
T 3rd5_A           93 NAGI   96 (291)
T ss_dssp             CCCC
T ss_pred             CCcC
Confidence            8874

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.69  E-value=0.0003  Score=55.08  Aligned_cols=78  Identities=26%  Similarity=0.387  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCc-e--EEcCCCCCCcc-HHHHHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-E--FVNSKNCGDKS-VSQIIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~--vi~~~~~~~~~-~~~~i~~~~~--~~  142 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +++.. .  ..|-.+   ++ +.+.+.+...  ++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~~g~   83 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTN---PESIEAVLKAITDEFGG   83 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC---HHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCC---HHHHHHHHHHHHHHcCC
Confidence            5789999986 8999999999988999 9999999988766543 34322 1  233333   33 2222222221  27


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|+++++.|.
T Consensus        84 iD~lv~nAg~   93 (248)
T 3op4_A           84 VDILVNNAGI   93 (248)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999998874

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.68  E-value=0.00035  Score=55.50  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc-eE--EcCCCCCCccHH-HHHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EF--VNSKNCGDKSVS-QIIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--i~~~~~~~~~~~-~~i~~~~~--~~  142 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.. .+  .|..+   .+-. +.+.+...  ++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~~g~  102 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTD---PDSVRALFTATVEKFGR  102 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTS---HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCC---HHHHHHHHHHHHHHcCC
Confidence            5788999987 8999999998888999 899999998876654 445532 22  23333   3322 22222211  27


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|++.|.
T Consensus       103 iD~lVnnAg~  112 (272)
T 4dyv_A          103 VDVLFNNAGT  112 (272)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999998874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.67  E-value=0.00081  Score=47.23  Aligned_cols=76  Identities=17%  Similarity=0.264  Sum_probs=53.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEE-cCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi-~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +.+|+|+|+|.+|..+++.+...|. +|+++++++++.+.+++ +|...+. |..+   .   +.+.+..-.++|+||-+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~---~---~~l~~~~~~~~d~vi~~   76 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVINGDCTK---I---KTLEDAGIEDADMYIAV   76 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEESCTTS---H---HHHHHTTTTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcEEEEcCCCC---H---HHHHHcCcccCCEEEEe
Confidence            4689999999999999999888898 89999999888776654 5654222 2222   1   22322211279999999


Q ss_pred             cCChh
Q 025101          150 VGLAS  154 (258)
Q Consensus       150 ~g~~~  154 (258)
                      ++...
T Consensus        77 ~~~~~   81 (140)
T 1lss_A           77 TGKEE   81 (140)
T ss_dssp             CSCHH
T ss_pred             eCCch
Confidence            98765

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.67  E-value=0.00035  Score=53.74  Aligned_cols=103  Identities=17%  Similarity=0.159  Sum_probs=69.2

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCc--eEEcCCCCCCccHHHHHH
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~  136 (258)
                      ...+.+++.+||-+|+|. |..++.+++.+  +. +|++++.+++..+.+++    .|..  ++ ....   .+..+.+.
T Consensus        50 ~~~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i-~~~~---gda~~~l~  123 (221)
T 3dr5_A           50 ATTNGNGSTGAIAITPAA-GLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRV-RFLL---SRPLDVMS  123 (221)
T ss_dssp             HHSCCTTCCEEEEESTTH-HHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGE-EEEC---SCHHHHGG
T ss_pred             HhhCCCCCCCEEEEcCCc-hHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcE-EEEE---cCHHHHHH
Confidence            344445566999999984 88999999976  45 99999999988877754    4533  22 1222   34444443


Q ss_pred             HhcCCCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          137 DMTDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ...++.||+||-....   ...++.+.+.|+|+ |.++.-.
T Consensus       124 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~dn  163 (221)
T 3dr5_A          124 RLANDSYQLVFGQVSPMDLKALVDAAWPLLRRG-GALVLAD  163 (221)
T ss_dssp             GSCTTCEEEEEECCCTTTHHHHHHHHHHHEEEE-EEEEETT
T ss_pred             HhcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCC-cEEEEeC
Confidence            3323489999843332   23478889999999 9988643

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.67  E-value=0.00029  Score=54.98  Aligned_cols=75  Identities=19%  Similarity=0.271  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhcCCceE---EcCCCCCCccHHHHHHHhcC-CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTEF---VNSKNCGDKSVSQIIIDMTD-GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~--~~~~~~~~g~~~v---i~~~~~~~~~~~~~i~~~~~-~~~  143 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|++++++++  ..+.+++.|....   .|..+   ++..   ++... +++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d---~~~v---~~~~~~g~i   80 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFAD---PLAA---KDSFTDAGF   80 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS---TTTT---TTSSTTTCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC---HHHH---HHHHHhCCC
Confidence            5899999986 8999999999999999 9999988753  3455666664322   23333   2222   22222 389


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |+++++.|.
T Consensus        81 DiLVNNAGi   89 (247)
T 4hp8_A           81 DILVNNAGI   89 (247)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999885

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.67  E-value=0.00044  Score=54.99  Aligned_cols=77  Identities=21%  Similarity=0.135  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCce-E--EcCCCCCCccHH---HHHHHhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVS---QIIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~~---~~i~~~~  139 (258)
                      .|+++||+|+ +++|.++++.+...|+ +|+++++++++.+.+.    +.+... .  .|..+  .++..   +.+.+. 
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~-  107 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE--AGAGTDLIERAEAI-  107 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS--TTHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC--HHHHHHHHHHHHHh-
Confidence            5789999986 8999999999988999 9999999887755432    234322 2  23333  12222   233333 


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                       +++|+++++.|.
T Consensus       108 -g~iD~lvnnAg~  119 (275)
T 4imr_A          108 -APVDILVINASA  119 (275)
T ss_dssp             -SCCCEEEECCCC
T ss_pred             -CCCCEEEECCCC
Confidence             479999998884

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.66  E-value=0.00032  Score=55.81  Aligned_cols=79  Identities=22%  Similarity=0.349  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC-ce--E--EcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV-TE--F--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~-~~--v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.|. ..  +  .|..+  .+++.+.+.+...
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  107 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN--EEDILSMFSAIRS  107 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence            5789999986 8999999998888999 8999999887665432    2332 11  2  23333  1222222222211


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|++|++.|.
T Consensus       108 ~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          108 QHSGVDICINNAGL  121 (279)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             hCCCCCEEEECCCC
Confidence              269999998873

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.66  E-value=0.00026  Score=55.37  Aligned_cols=80  Identities=25%  Similarity=0.319  Sum_probs=54.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceEEcCCCCCCcc-HH---HHHHHhcCCCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKS-VS---QIIIDMTDGGAD  144 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~-~~---~~i~~~~~~~~d  144 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++....+-.-+.++.+ +.   +.+.+.. +++|
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id   82 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALT-GGID   82 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHH-SCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHC-CCCC
Confidence            5789999986 8999999999999999 999999998876654 445543222222222232 22   2333322 2799


Q ss_pred             EEEEecCC
Q 025101          145 YCFECVGL  152 (258)
Q Consensus       145 ~v~d~~g~  152 (258)
                      +++++.|.
T Consensus        83 ~lv~nAg~   90 (247)
T 3rwb_A           83 ILVNNASI   90 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998884

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.66  E-value=0.00032  Score=52.50  Aligned_cols=100  Identities=20%  Similarity=0.256  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCC---------CeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHh
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGA---------TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~---------~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      .++++++||.+|+|+ |..+..+++..|.         .+|++++.++...     ......++..+....+....+.+.
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~   92 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFLCPADVTDPRTSQRILEV   92 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEECSCCTTSHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCeEEEeccCCCHHHHHHHHHh
Confidence            367899999999987 8899999998773         3899999887531     111123311111112334444444


Q ss_pred             cCC-CCCEEEE-----ecCCh------------hhHHHHHHhhhcCCceEEEec
Q 025101          139 TDG-GADYCFE-----CVGLA------------SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ~~~-~~d~v~d-----~~g~~------------~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .++ .+|+|+.     +++..            ..+..+.+.|+|+ |+++...
T Consensus        93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  145 (196)
T 2nyu_A           93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG-GTFLCKT  145 (196)
T ss_dssp             SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence            544 8999994     33321            3477889999999 9998764

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.66  E-value=0.00011  Score=58.49  Aligned_cols=103  Identities=18%  Similarity=0.286  Sum_probs=72.3

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCC-ceEEcCCCCCCccHHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~~i~  136 (258)
                      +.....+.++++||.+|+|. |..+..+++..| ..+|++++.+++..+.+++    .|. +.+- ...   .++.+.  
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~-~~~---~d~~~~--  176 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVT-IKV---RDISEG--  176 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEE-EEC---CCGGGC--
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEE-EEE---CCHHHc--
Confidence            34556788999999999986 888889998854 2399999999988887765    353 2221 111   122111  


Q ss_pred             HhcCCCCCEEEEecCCh-hhHHHHHHhhhcCCceEEEec
Q 025101          137 DMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g  174 (258)
                       ...+.+|+|+-....+ ..+..+.+.|+++ |.++...
T Consensus       177 -~~~~~~D~V~~~~~~~~~~l~~~~~~L~pg-G~l~~~~  213 (277)
T 1o54_A          177 -FDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVC  213 (277)
T ss_dssp             -CSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEE
T ss_pred             -ccCCccCEEEECCcCHHHHHHHHHHHcCCC-CEEEEEe
Confidence             1223799999766654 5688999999999 9988765

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.66  E-value=0.00064  Score=53.95  Aligned_cols=102  Identities=24%  Similarity=0.364  Sum_probs=63.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc-chHHH----HHhcCCceE---EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEI----GKRFGVTEF---VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~~~----~~~~g~~~v---i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++.. ++.+.    +++.|....   .|..+  .+++.+.+.+... 
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRD--AEAIEQAIRETVEA  106 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 8999999998888999 888885543 44333    233454322   23332  1222222332221 


Q ss_pred             -CCCCEEEEecCChh-------------------------hHHHHHHhhhcCCceEEEeccc
Q 025101          141 -GGADYCFECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       141 -~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                       +++|++|++.|...                         ..+.+...++.+ |+++.++..
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-g~iv~isS~  167 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG-GRIITIGSN  167 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCG
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEeCh
Confidence             27999999887410                         233445556667 999988753

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.65  E-value=7.4e-05  Score=58.57  Aligned_cols=102  Identities=14%  Similarity=0.125  Sum_probs=69.1

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcCC-
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDG-  141 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~-  141 (258)
                      ...++.+||-+|+|. |..+..+++.++ ..+|++++.+++..+.+++    .|...-+....   .+..+.+....+. 
T Consensus        60 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~l~~~~~~~  135 (248)
T 3tfw_A           60 RLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE---GPALQSLESLGECP  135 (248)
T ss_dssp             HHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHTCCSCC
T ss_pred             hhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHhcCCCC
Confidence            456789999999975 888889998764 3399999999998877765    35431111111   3444445444333 


Q ss_pred             CCCEEEEecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          142 GADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       142 ~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .||+||-....   ...+..+.+.|+|+ |.++.-.
T Consensus       136 ~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~~~  170 (248)
T 3tfw_A          136 AFDLIFIDADKPNNPHYLRWALRYSRPG-TLIIGDN  170 (248)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEEC
T ss_pred             CeEEEEECCchHHHHHHHHHHHHhcCCC-eEEEEeC
Confidence            79999932222   34578889999999 9887654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.64  E-value=0.00019  Score=56.29  Aligned_cols=101  Identities=14%  Similarity=0.085  Sum_probs=72.2

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhc-----CCce--EEcCCCCCCccHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF-----GVTE--FVNSKNCGDKSVSQII  135 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~-----g~~~--vi~~~~~~~~~~~~~i  135 (258)
                      .....+.++++||..|+|. |..+..+++..| ..+|++++.+++..+.+++.     |.+.  ++..      ++.+. 
T Consensus        89 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~------d~~~~-  160 (258)
T 2pwy_A           89 VTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLG------KLEEA-  160 (258)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEES------CGGGC-
T ss_pred             HHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEEC------chhhc-
Confidence            4556788999999999985 888899998853 23999999999988887653     5322  2221      11110 


Q ss_pred             HHhcCCCCCEEEEecCCh-hhHHHHHHhhhcCCceEEEec
Q 025101          136 IDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g  174 (258)
                       ....+.+|+|+...+.+ ..+..+.+.++++ |+++.+.
T Consensus       161 -~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  198 (258)
T 2pwy_A          161 -ELEEAAYDGVALDLMEPWKVLEKAALALKPD-RFLVAYL  198 (258)
T ss_dssp             -CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred             -CCCCCCcCEEEECCcCHHHHHHHHHHhCCCC-CEEEEEe
Confidence             11123799999766654 5688999999999 9998775

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.64  E-value=0.00066  Score=51.90  Aligned_cols=97  Identities=9%  Similarity=0.028  Sum_probs=62.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHH-HcCCCeEEEEcCCcc-hHHHHHhcCCc-eEE--cCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           73 STVVIFGL-GSIGLAVAEGAR-LCGATRIIGVDVISE-KFEIGKRFGVT-EFV--NSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~-~~g~~~v~~~~~~~~-~~~~~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      ++|||+|+ |.+|..+++.+. ..|+ +|++++++++ +.+.+.+.+.. .++  |..+   .+   .+.+... ++|+|
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d---~~---~~~~~~~-~~d~v   77 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSFQN---PG---XLEQAVT-NAEVV   77 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCTTC---HH---HHHHHHT-TCSEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCCCC---HH---HHHHHHc-CCCEE
Confidence            46999996 999999988887 8999 9999999987 66555322221 222  3322   22   2333322 69999


Q ss_pred             EEecCChh-hHHHHHHhhhcC-CceEEEecccC
Q 025101          147 FECVGLAS-LVQEAYACCRKG-WGKTIVLGVDQ  177 (258)
Q Consensus       147 ~d~~g~~~-~~~~~~~~l~~~-~G~~v~~g~~~  177 (258)
                      |++.|... .....++.++.. .++++.++...
T Consensus        78 v~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           78 FVGAMESGSDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             EESCCCCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             EEcCCCCChhHHHHHHHHHhcCCCeEEEEeece
Confidence            99998632 134455555443 25888887654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.64  E-value=4.9e-05  Score=58.06  Aligned_cols=102  Identities=17%  Similarity=0.181  Sum_probs=70.4

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~  137 (258)
                      .....+.++++||.+|+| .|..+..+++..|  . +|++++.+++..+.+++    .|...+ ....   .+....+. 
T Consensus        70 ~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~---~d~~~~~~-  142 (215)
T 2yxe_A           70 CELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDG-LVVSIERIPELAEKAERTLRKLGYDNV-IVIV---GDGTLGYE-  142 (215)
T ss_dssp             HHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHTCTTE-EEEE---SCGGGCCG-
T ss_pred             HHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEE---CCcccCCC-
Confidence            355678899999999998 4889999999876  5 89999999988877765    343221 1111   11111110 


Q ss_pred             hcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          138 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                       ..+.+|+|+.+.+.....+.+.+.|+++ |+++..-
T Consensus       143 -~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~lv~~~  177 (215)
T 2yxe_A          143 -PLAPYDRIYTTAAGPKIPEPLIRQLKDG-GKLLMPV  177 (215)
T ss_dssp             -GGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             -CCCCeeEEEECCchHHHHHHHHHHcCCC-cEEEEEE
Confidence             1237999998766555457888999999 9987664

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.63  E-value=8.7e-05  Score=57.76  Aligned_cols=103  Identities=15%  Similarity=0.102  Sum_probs=69.6

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc--
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT--  139 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~--  139 (258)
                      ....++++||.+|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|...-+....   .+..+.+.+..  
T Consensus        56 ~~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~~~~~~~~  131 (239)
T 2hnk_A           56 TKISGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKL---GSALETLQVLIDS  131 (239)
T ss_dssp             HHHHTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHC
T ss_pred             HHhhCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE---CCHHHHHHHHHhh
Confidence            345678999999998 4888999999874 2399999999988877765    35432111111   23433333321  


Q ss_pred             ------------C-CCCCEEEEecCCh---hhHHHHHHhhhcCCceEEEec
Q 025101          140 ------------D-GGADYCFECVGLA---SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ------------~-~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g  174 (258)
                                  + +.||+||...+..   ..+..+.+.++++ |.++.-.
T Consensus       132 ~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  181 (239)
T 2hnk_A          132 KSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG-GLLIADN  181 (239)
T ss_dssp             SSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence                        1 4799999765543   3468888999999 9988653

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.62  E-value=0.00017  Score=58.52  Aligned_cols=100  Identities=12%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCc---eEEcCCCCCCccHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT---EFVNSKNCGDKSVSQII  135 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~i  135 (258)
                      +.+...+.++++||.+|+|. |..+..+++..|+ +|++++.+++..+.+++.    |..   .++..      ++    
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~------d~----  149 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ------GW----  149 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES------CG----
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC------Ch----
Confidence            34556778999999999986 8888899987788 999999999988877653    321   12211      11    


Q ss_pred             HHhcCCCCCEEEEe-----cCC---hhhHHHHHHhhhcCCceEEEeccc
Q 025101          136 IDMTDGGADYCFEC-----VGL---ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       136 ~~~~~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      .+. ++.+|+|+..     .+.   ...+..+.+.|+|+ |++++....
T Consensus       150 ~~~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  196 (318)
T 2fk8_A          150 EDF-AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSSV  196 (318)
T ss_dssp             GGC-CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEEE
T ss_pred             HHC-CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC-cEEEEEEec
Confidence            111 2479999976     332   33577888999999 999876544

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.62  E-value=0.00026  Score=57.08  Aligned_cols=100  Identities=16%  Similarity=0.259  Sum_probs=72.2

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  135 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i  135 (258)
                      +.....++++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++    .|..   .++..      ++.   
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~------d~~---  132 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ------GWE---  132 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC------CGG---
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC------CHH---
Confidence            44566788999999999985 8889999998887 99999999988877765    3432   12221      221   


Q ss_pred             HHhcCCCCCEEEEecCC---------------hhhHHHHHHhhhcCCceEEEeccc
Q 025101          136 IDMTDGGADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                       +. .+.+|+|+....-               ...+..+.+.|+|+ |++++....
T Consensus       133 -~~-~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~  185 (302)
T 3hem_A          133 -EF-DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTIT  185 (302)
T ss_dssp             -GC-CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT-CEEEEEEEE
T ss_pred             -Hc-CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC-cEEEEEEEe
Confidence             12 3489999864321               24578899999999 999877644

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.61  E-value=0.00068  Score=54.06  Aligned_cols=101  Identities=21%  Similarity=0.265  Sum_probs=63.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC------------cchHHH----HHhcCCceE---EcCCCCCCcc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI------------SEKFEI----GKRFGVTEF---VNSKNCGDKS  130 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~------------~~~~~~----~~~~g~~~v---i~~~~~~~~~  130 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|++++++            .++.+.    +++.+....   .|..+   .+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~   84 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRD---RA   84 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTC---HH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCC---HH
Confidence            5789999986 8999999999988999 89999876            333332    233443322   23333   33


Q ss_pred             HH-HHHHHhcC--CCCCEEEEecCCh--------h---------------hHHHHHHhhhcCCceEEEeccc
Q 025101          131 VS-QIIIDMTD--GGADYCFECVGLA--------S---------------LVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       131 ~~-~~i~~~~~--~~~d~v~d~~g~~--------~---------------~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      -. +.+.+...  +++|++|++.|..        .               ..+.++..+..+ |+++.++..
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~  155 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSG-ASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcC-cEEEEeccc
Confidence            22 22222221  2799999988741        1               123444555566 899988753

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.61  E-value=0.0006  Score=54.26  Aligned_cols=78  Identities=19%  Similarity=0.270  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCc-eE--EcCCCCCCcc-HHHHHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EF--VNSKNCGDKS-VSQIIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~v--i~~~~~~~~~-~~~~i~~~~~--~~  142 (258)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+. +++.. ..  .|..+   .+ +.+.+.+...  ++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~~~~~~~~~~~~~g~   79 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTD---GERIDVVAADVLARYGR   79 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTC---HHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCC---HHHHHHHHHHHHHhCCC
Confidence            4688999986 8999999999888999 9999999988876553 45432 22  23333   33 2222222211  27


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|.+.|.
T Consensus        80 id~lv~~Ag~   89 (281)
T 3m1a_A           80 VDVLVNNAGR   89 (281)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999998874

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.61  E-value=0.00049  Score=54.50  Aligned_cols=103  Identities=20%  Similarity=0.285  Sum_probs=64.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC-cchHHH----HHhcCCce-E--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEI----GKRFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~-~~~~~~----~~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +|+++||+|+ +++|.++++.+...|+ +|+++++. +++.+.    +++.|... .  .|..+  .+++.+.+.+... 
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ--VPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 8999999999988999 88887654 333332    23445432 2  23332  1222222322221 


Q ss_pred             -CCCCEEEEecCChh-------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          141 -GGADYCFECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       141 -~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                       +++|+++++.|...                         ..+.++..+.++ |+++.++...
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~  155 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG-GRIVLTSSNT  155 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCTT
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CeEEEEeCch
Confidence             27999999887410                         234556666777 9999998654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.61  E-value=0.00014  Score=57.05  Aligned_cols=103  Identities=18%  Similarity=0.216  Sum_probs=72.5

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~  137 (258)
                      +.....+.++++||..|+|. |..+..+++..| ..+|++++.+++..+.+++    .|...-++...   .++.    +
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~----~  156 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKL---KDIY----E  156 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEEC---SCGG----G
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEE---Cchh----h
Confidence            34566788999999999986 888899998853 3399999999988877765    35332011111   1222    1


Q ss_pred             hcCC-CCCEEEEecCCh-hhHHHHHHhhhcCCceEEEec
Q 025101          138 MTDG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~-~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .... .+|+|+-..+.+ ..+..+.+.|+|+ |+++.+.
T Consensus       157 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  194 (255)
T 3mb5_A          157 GIEEENVDHVILDLPQPERVVEHAAKALKPG-GFFVAYT  194 (255)
T ss_dssp             CCCCCSEEEEEECSSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred             ccCCCCcCEEEECCCCHHHHHHHHHHHcCCC-CEEEEEE
Confidence            1223 799999766654 3689999999999 9998764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.61  E-value=0.00085  Score=53.86  Aligned_cols=104  Identities=21%  Similarity=0.164  Sum_probs=64.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcc--hHHH----HHhcCCceEEcCCCCCCccHHH----HHHHhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEI----GKRFGVTEFVNSKNCGDKSVSQ----IIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~--~~~~----~~~~g~~~vi~~~~~~~~~~~~----~i~~~~  139 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|++++++.+  +.+.    +++.|....+-.-+.++.+..+    .+.+..
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5789999986 8999999998888999 8998887632  2222    2345543322222222233222    222222


Q ss_pred             CCCCCEEEEecCChh--------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          140 DGGADYCFECVGLAS--------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       140 ~~~~d~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                       +++|+++++.|...                          ..+.++..+.++ |+++.++...
T Consensus       127 -g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~Iv~isS~~  188 (294)
T 3r3s_A          127 -GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG-ASIITTSSIQ  188 (294)
T ss_dssp             -TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCGG
T ss_pred             -CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC-CEEEEECChh
Confidence             27999999887410                          233445556667 9999987644

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.61  E-value=0.00065  Score=54.61  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=65.3

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCceEE--cCCCCCCccHH-HHHHHhcC
Q 025101           71 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFV--NSKNCGDKSVS-QIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g--~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~vi--~~~~~~~~~~~-~~i~~~~~  140 (258)
                      .|+++||+|+ |  ++|.++++.+...|+ +|++++++++..+.++    +.+....+  |-.+   .+-. +.+.+...
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~  104 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSD---AESVDNMFKVLAE  104 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCC---HHHHHHHHHHHHH
Confidence            5789999986 5  999999998888999 8999999876554443    34432222  3333   3322 22222211


Q ss_pred             --CCCCEEEEecCChh-----------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          141 --GGADYCFECVGLAS-----------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       141 --~~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                        +++|++|++.|...                             ..+.+...+..+ |+++.++...
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-g~IV~isS~~  171 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNG-GSILTLSYYG  171 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTC-EEEEEEECGG
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CEEEEEEehh
Confidence              37999999887421                             123344455667 9999887543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.60  E-value=0.00048  Score=53.98  Aligned_cols=91  Identities=19%  Similarity=0.280  Sum_probs=57.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc-------------------chHHHHH----hcCCc-eEEcCC-C
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-------------------EKFEIGK----RFGVT-EFVNSK-N  125 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~-------------------~~~~~~~----~~g~~-~vi~~~-~  125 (258)
                      .+.+|+|+|+|++|..+++.+...|..++++++++.                   .|.+.+.    ++... .+.... +
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  109 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  109 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            357999999999999999999889988899999886                   5655442    22221 221111 1


Q ss_pred             CCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcC
Q 025101          126 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKG  166 (258)
Q Consensus       126 ~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~  166 (258)
                      .  .  .+.+.+... ++|+|++|+++..+-..+.+.+...
T Consensus       110 ~--~--~~~~~~~~~-~~DvVi~~~d~~~~~~~l~~~~~~~  145 (249)
T 1jw9_B          110 L--D--DAELAALIA-EHDLVLDCTDNVAVRNQLNAGCFAA  145 (249)
T ss_dssp             C--C--HHHHHHHHH-TSSEEEECCSSHHHHHHHHHHHHHH
T ss_pred             C--C--HhHHHHHHh-CCCEEEEeCCCHHHHHHHHHHHHHc
Confidence            1  1  112222221 6999999999877444444444444

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.59  E-value=6.4e-05  Score=57.17  Aligned_cols=99  Identities=16%  Similarity=0.065  Sum_probs=69.1

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCce--EEcCCCCCCccHHHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~~  137 (258)
                      .+...+.++++||.+|+|. |..+..+++. +. +|++++.+++..+.+++    .|...  ++..+      ..+... 
T Consensus        70 ~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d------~~~~~~-  139 (210)
T 3lbf_A           70 TELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGD------GWQGWQ-  139 (210)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC------GGGCCG-
T ss_pred             HHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEECC------cccCCc-
Confidence            4566788999999999984 8888888887 66 99999999988887765    34332  22211      111111 


Q ss_pred             hcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          138 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                       ..+.||+|+.+.......+.+.+.|+|+ |+++..-
T Consensus       140 -~~~~~D~i~~~~~~~~~~~~~~~~L~pg-G~lv~~~  174 (210)
T 3lbf_A          140 -ARAPFDAIIVTAAPPEIPTALMTQLDEG-GILVLPV  174 (210)
T ss_dssp             -GGCCEEEEEESSBCSSCCTHHHHTEEEE-EEEEEEE
T ss_pred             -cCCCccEEEEccchhhhhHHHHHhcccC-cEEEEEE
Confidence             1237999998665555456788999999 9887654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.59  E-value=0.0012  Score=52.79  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=61.4

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.. .       .+..+.+.     ..|+||-|+..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~-------~~~~~~~~-----~aDvvi~~vp~   67 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAER-A-------ATPCEVVE-----SCPVTFAMLAD   67 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEE-C-------SSHHHHHH-----HCSEEEECCSS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCee-c-------CCHHHHHh-----cCCEEEEEcCC
Confidence            478999999999999998888898 9999999999999888877532 1       23333333     37888888886


Q ss_pred             hhhHHHHH-------HhhhcCCceEEEec
Q 025101          153 ASLVQEAY-------ACCRKGWGKTIVLG  174 (258)
Q Consensus       153 ~~~~~~~~-------~~l~~~~G~~v~~g  174 (258)
                      +..+...+       ..++++ ..++.++
T Consensus        68 ~~~~~~v~~~~~~l~~~l~~~-~~vi~~s   95 (287)
T 3pef_A           68 PAAAEEVCFGKHGVLEGIGEG-RGYVDMS   95 (287)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred             HHHHHHHHcCcchHhhcCCCC-CEEEeCC
Confidence            54344444       344554 5555443

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.58  E-value=0.00073  Score=55.49  Aligned_cols=100  Identities=17%  Similarity=0.181  Sum_probs=67.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCC-C-C---------c-cH-HHHHH
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC-G-D---------K-SV-SQIII  136 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~-~-~---------~-~~-~~~i~  136 (258)
                      -+|++|.|+|.|.+|+.+++.++.+|+ +|++.+.++++.++.+++|+..+ +..++ . +         + .+ .+.+.
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~  250 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR  250 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHh
Confidence            478999999999999999999999999 99988887766666666775322 21110 0 0         0 01 11222


Q ss_pred             HhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecc
Q 025101          137 DMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      .+   +.++|+++...+.+.+.+.+.+..+ |.++.-+.
T Consensus       251 ~l---k~~iVie~AN~p~t~~eA~~~L~~~-gIlv~Pd~  285 (355)
T 1c1d_A          251 TL---DCSVVAGAANNVIADEAASDILHAR-GILYAPDF  285 (355)
T ss_dssp             HC---CCSEECCSCTTCBCSHHHHHHHHHT-TCEECCHH
T ss_pred             hC---CCCEEEECCCCCCCCHHHHHHHHhC-CEEEECCe
Confidence            22   5778888887776444667888887 77765543

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.57  E-value=0.00035  Score=55.16  Aligned_cols=78  Identities=15%  Similarity=0.129  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-------HhcCCceE---EcCCCCCCccHHH-HHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-------KRFGVTEF---VNSKNCGDKSVSQ-IIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-------~~~g~~~v---i~~~~~~~~~~~~-~i~~~  138 (258)
                      +|+++||+|+ +++|.++++.+...|+ +|++++++....+.+       ++.|....   .|..+   .+-.+ .+.+.
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~   85 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN---EEEVAKLFDFA   85 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCS---HHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCC---HHHHHHHHHHH
Confidence            5789999986 8999999999888999 899987654432222       22343221   23333   33222 22222


Q ss_pred             cC--CCCCEEEEecCC
Q 025101          139 TD--GGADYCFECVGL  152 (258)
Q Consensus       139 ~~--~~~d~v~d~~g~  152 (258)
                      ..  +++|++|++.|.
T Consensus        86 ~~~~g~iD~lvnnAg~  101 (262)
T 3ksu_A           86 EKEFGKVDIAINTVGK  101 (262)
T ss_dssp             HHHHCSEEEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            11  379999998883

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.57  E-value=0.00031  Score=55.20  Aligned_cols=78  Identities=21%  Similarity=0.303  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEE--cCCCCCCccHHHHHHHhcC--CCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV--NSKNCGDKSVSQIIIDMTD--GGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~~~~i~~~~~--~~~d~  145 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+..++++. .++  |..+  .+++.+.+.+...  +++|+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~--~~~~~~~~~~~~~~~g~iD~   80 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLED--ERERVRFVEEAAYALGRVDV   80 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTC--HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4789999987 8999999998888999 89999998877434444432 332  3332  1222222322211  37999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      +|++.|.
T Consensus        81 lv~~Ag~   87 (256)
T 2d1y_A           81 LVNNAAI   87 (256)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9998873

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.57  E-value=0.0012  Score=52.20  Aligned_cols=77  Identities=18%  Similarity=0.116  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----h-cCCc-e-E--EcCCCCCCccHHH----HHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----R-FGVT-E-F--VNSKNCGDKSVSQ----III  136 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~-~g~~-~-v--i~~~~~~~~~~~~----~i~  136 (258)
                      +|+++||+|+ +++|.++++.+...|+ +|+++++++++.+.+.    + .+.. . .  .|..+   .+-.+    .+.
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~   82 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD---ALQVRAFAEACE   82 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC---HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC---HHHHHHHHHHHH
Confidence            5789999986 8999999998888999 8999999987765432    2 3322 1 2  23333   33222    222


Q ss_pred             HhcCCCCCEEEEecCC
Q 025101          137 DMTDGGADYCFECVGL  152 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~  152 (258)
                      +.. +++|+++++.|.
T Consensus        83 ~~~-g~id~lvnnAg~   97 (265)
T 3lf2_A           83 RTL-GCASILVNNAGQ   97 (265)
T ss_dssp             HHH-CSCSEEEECCCC
T ss_pred             HHc-CCCCEEEECCCC
Confidence            222 279999998874

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.57  E-value=0.00067  Score=54.46  Aligned_cols=102  Identities=17%  Similarity=0.203  Sum_probs=65.1

Q ss_pred             CCCCEEEEEcc-CH--HHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCceE--EcCCCCCCccHHH----HHH
Q 025101           70 EVGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF--VNSKNCGDKSVSQ----III  136 (258)
Q Consensus        70 ~~g~~vlI~G~-g~--~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v--i~~~~~~~~~~~~----~i~  136 (258)
                      -+|+++||+|+ |.  +|.++++.+...|+ +|++++++++..+.++    +.+...+  .|..+   .+-.+    .+.
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~  104 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVAD---AASIDAVFETLE  104 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTC---HHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCC---HHHHHHHHHHHH
Confidence            36789999986 55  99999998888999 8999998865444332    2342222  23333   33222    222


Q ss_pred             HhcCCCCCEEEEecCChh-----------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          137 DMTDGGADYCFECVGLAS-----------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      +.. +++|++|++.|...                             ..+.++..++.+ |+++.++...
T Consensus       105 ~~~-g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~Iv~isS~~  172 (293)
T 3grk_A          105 KKW-GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG-GSILTLTYYG  172 (293)
T ss_dssp             HHT-SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC-EEEEEEECGG
T ss_pred             Hhc-CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CEEEEEeehh
Confidence            222 37999999887420                             233455556677 9999887543

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.57  E-value=0.0008  Score=52.91  Aligned_cols=77  Identities=16%  Similarity=0.085  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhcCCce-E--EcCCCCCCccHH-H---HHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVS-Q---IIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~-~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~-~---~i~~  137 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++ .+++++.+.+    ++.|... +  .|-.+   .+-. +   .+.+
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~   78 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQ---PAKIKEMFQQIDE   78 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC---HHHHHHHHHHHHH
Confidence            5789999986 8999999999988999 88886 7777665443    2334332 2  23333   3322 2   2222


Q ss_pred             hcCCCCCEEEEecCC
Q 025101          138 MTDGGADYCFECVGL  152 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~  152 (258)
                      .. +++|++|++.|.
T Consensus        79 ~~-g~id~lv~nAg~   92 (258)
T 3oid_A           79 TF-GRLDVFVNNAAS   92 (258)
T ss_dssp             HH-SCCCEEEECCCC
T ss_pred             Hc-CCCCEEEECCCC
Confidence            22 279999998873

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.56  E-value=0.00073  Score=55.53  Aligned_cols=130  Identities=16%  Similarity=0.170  Sum_probs=80.9

Q ss_pred             CEEEEEccCHHHHHHHHHHH-Hc-CCCeEE-EEcCCcchHHH-HHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEE
Q 025101           73 STVVIFGLGSIGLAVAEGAR-LC-GATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF  147 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~-~~-g~~~v~-~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~  147 (258)
                      -+|.|+|+|.+|...++.++ .. ++ +++ +.++++++.+. ++++|+..++       .++.+.+    .. ++|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~-~~vav~d~~~~~~~~~a~~~g~~~~~-------~~~~~~l----~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGV-KLVAACALDSNQLEWAKNELGVETTY-------TNYKDMI----DTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSE-EEEEEECSCHHHHHHHHHTTCCSEEE-------SCHHHHH----TTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCc-EEEEEecCCHHHHHHHHHHhCCCccc-------CCHHHHh----cCCCCCEEE
Confidence            47899999999998888776 43 66 554 45777777654 4567875454       2233222    23 799999


Q ss_pred             EecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHH---H----Hhc-CceEEecccCCCCCCCcHHHHHHHHHc
Q 025101          148 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE---V----LHS-GKILMGSLFGGLKAKSDIPILLKRYMD  219 (258)
Q Consensus       148 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (258)
                      .|++.....+.+..+++.  |+-+++...     ...+...   +    -.+ +..+....  ...+...++.+.+++.+
T Consensus        77 i~tp~~~h~~~~~~al~~--G~~v~~eKp-----~~~~~~~~~~l~~~a~~~~~~~~~~~~--~~r~~p~~~~~~~~i~~  147 (346)
T 3cea_A           77 IVAPTPFHPEMTIYAMNA--GLNVFCEKP-----LGLDFNEVDEMAKVIKSHPNQIFQSGF--MRRYDDSYRYAKKIVDN  147 (346)
T ss_dssp             ECSCGGGHHHHHHHHHHT--TCEEEECSC-----CCSCHHHHHHHHHHHHTCTTSCEECCC--GGGTCHHHHHHHHHHHT
T ss_pred             EeCChHhHHHHHHHHHHC--CCEEEEcCC-----CCCCHHHHHHHHHHHHhCCCCeEEEec--ccccCHHHHHHHHHHHc
Confidence            999988778888888876  555555421     1222211   2    123 44443222  22223458888889998


Q ss_pred             CCCC
Q 025101          220 KELE  223 (258)
Q Consensus       220 g~~~  223 (258)
                      |.+.
T Consensus       148 g~iG  151 (346)
T 3cea_A          148 GDIG  151 (346)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            8653

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.56  E-value=0.00048  Score=54.98  Aligned_cols=77  Identities=10%  Similarity=0.124  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc---C-Cc-eE--EcCCCCCCcc-HHH---HHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---G-VT-EF--VNSKNCGDKS-VSQ---IIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~---g-~~-~v--i~~~~~~~~~-~~~---~i~~  137 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++   + .. ..  .|..+   .+ +.+   .+.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~  107 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD---PDQVAALFAAVRA  107 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC---HHHHHHHHHHHHH
Confidence            5789999986 8999999998888999 8999999987765432 22   2 11 22  23333   33 222   2333


Q ss_pred             hcCCCCCEEEEecCC
Q 025101          138 MTDGGADYCFECVGL  152 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~  152 (258)
                      .. +++|++|++.|.
T Consensus       108 ~~-g~iD~lvnnAG~  121 (281)
T 4dry_A          108 EF-ARLDLLVNNAGS  121 (281)
T ss_dssp             HH-SCCSEEEECCCC
T ss_pred             Hc-CCCCEEEECCCC
Confidence            22 379999998874

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.56  E-value=0.00084  Score=51.29  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=62.8

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      +|||+|+ |.+|..+++.+...|. +|++++|++++.+.+...++..+ .|..+   .+. +.+     +++|+||.+.|
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~D~~d---~~~-~~~-----~~~d~vi~~ag   71 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVATLVKEPLV---LTE-ADL-----DSVDAVVDALS   71 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEEEECCGGG---CCH-HHH-----TTCSEEEECCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceEEeccccc---ccH-hhc-----ccCCEEEECCc
Confidence            6899997 9999999999988899 99999999887766544444322 23333   333 111     27999999997


Q ss_pred             Ch----------hhHHHHHHhhhcCCceEEEecc
Q 025101          152 LA----------SLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       152 ~~----------~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ..          .....+++.++..+++++.+++
T Consensus        72 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           72 VPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             CCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             cCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence            62          1234555555543278888854

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.56  E-value=0.00041  Score=56.17  Aligned_cols=92  Identities=21%  Similarity=0.198  Sum_probs=63.0

Q ss_pred             CEEEEEccCHHHHHHHHHHH--HcCCCeEEEEcCCcch--HHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEE
Q 025101           73 STVVIFGLGSIGLAVAEGAR--LCGATRIIGVDVISEK--FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF  147 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~--~~g~~~v~~~~~~~~~--~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~  147 (258)
                      -+|.|+|+|.+|...+..+.  .-+.+-+.++++++++  .++++++|.....        +..+.+.+.+++ ++|+||
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~--------~~~e~ll~~~~~~~iDvV~   76 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY--------AGVEGLIKLPEFADIDFVF   76 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES--------SHHHHHHHSGGGGGEEEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc--------CCHHHHHhccCCCCCcEEE
Confidence            47899999999998888774  3466334445666666  5667788864221        123334333323 799999


Q ss_pred             EecCChhhHHHHHHhhhc--CCceEEEe
Q 025101          148 ECVGLASLVQEAYACCRK--GWGKTIVL  173 (258)
Q Consensus       148 d~~g~~~~~~~~~~~l~~--~~G~~v~~  173 (258)
                      ++++.....+.+...++.  + .+++..
T Consensus        77 ~atp~~~h~~~a~~al~a~~G-k~Vi~e  103 (312)
T 1nvm_B           77 DATSASAHVQNEALLRQAKPG-IRLIDL  103 (312)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTT-CEEEEC
T ss_pred             ECCChHHHHHHHHHHHHhCCC-CEEEEc
Confidence            999987778888888887  7 777653

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.56  E-value=0.00084  Score=53.58  Aligned_cols=96  Identities=17%  Similarity=0.144  Sum_probs=61.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC----ceEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV----TEFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~----~~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      -++++++|+|+|++|.+++..+...|+++|+++.|+.++.+.+ ++++.    ..+.....   +++.+.+.     .+|
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~---~~l~~~l~-----~~D  196 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA---RGIEDVIA-----AAD  196 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS---TTHHHHHH-----HSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH---HHHHHHHh-----cCC
Confidence            4688999999999999999988889997899999999887644 33321    11211111   24444443     489


Q ss_pred             EEEEecCChhh----HHHHHHhhhcCCceEEEec
Q 025101          145 YCFECVGLASL----VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       145 ~v~d~~g~~~~----~~~~~~~l~~~~G~~v~~g  174 (258)
                      +||+|++....    .......++++ ..++.+-
T Consensus       197 iVInaTp~Gm~~~~~~pi~~~~l~~~-~~v~Dlv  229 (283)
T 3jyo_A          197 GVVNATPMGMPAHPGTAFDVSCLTKD-HWVGDVV  229 (283)
T ss_dssp             EEEECSSTTSTTSCSCSSCGGGCCTT-CEEEECC
T ss_pred             EEEECCCCCCCCCCCCCCCHHHhCCC-CEEEEec
Confidence            99999874220    01123455665 5555554

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.55  E-value=0.00059  Score=54.09  Aligned_cols=78  Identities=19%  Similarity=0.251  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-e--EEcCCCCCCccHH-HHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-E--FVNSKNCGDKSVS-QIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~--vi~~~~~~~~~~~-~~i~~~~~-  140 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.+.. .  ..|..+   .+-. ..+.+... 
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~  102 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVND---ATAVDALVESTLKE  102 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCC---HHHHHHHHHHHHHH
Confidence            5789999986 8999999998888999 999999998776543    233422 1  234333   3322 22222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|++.|.
T Consensus       103 ~g~iD~lvnnAg~  115 (270)
T 3ftp_A          103 FGALNVLVNNAGI  115 (270)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             279999998873

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.55  E-value=0.00037  Score=54.84  Aligned_cols=79  Identities=19%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce-E--EcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      .++++||+|+ +++|.++++.+...|+ +|+++++++++.+.+ ++++... .  .|..+  .+++.+.+.+...  +++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   84 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISK--EADVDAAVEAALSKFGKV   84 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHhcCCC
Confidence            4789999987 8999999999888999 899999998887654 3455332 2  23333  1222222222211  279


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|.+.|.
T Consensus        85 d~li~~Ag~   93 (261)
T 3n74_A           85 DILVNNAGI   93 (261)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999998873

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.54  E-value=0.00074  Score=52.92  Aligned_cols=76  Identities=11%  Similarity=0.005  Sum_probs=50.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH---hcCCc-eEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK---RFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~---~~g~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      +++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.   +.|.. ..+|..+  .+.+.+.+.+.. +++|++|
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~--v~~~~~~~~~~~-g~iD~lv   77 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE--PAELIEAVTSAY-GQVDVLV   77 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS--HHHHHHHHHHHH-SCCCEEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEEECHHH--HHHHHHHHHHHh-CCCCEEE
Confidence            46899986 8999999999988999 8999999887765543   23433 2222211  122333333333 3799999


Q ss_pred             EecCC
Q 025101          148 ECVGL  152 (258)
Q Consensus       148 d~~g~  152 (258)
                      ++.|.
T Consensus        78 ~nAg~   82 (254)
T 1zmt_A           78 SNDIF   82 (254)
T ss_dssp             EECCC
T ss_pred             ECCCc
Confidence            98874

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.54  E-value=0.0011  Score=50.48  Aligned_cols=92  Identities=12%  Similarity=0.178  Sum_probs=62.4

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      +|||+|+ |.+|..+++.+...|+ +|++++|++++.+.+. .++..+ .|..+   .+. +.+     +++|+||.+.|
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~~~~~D~~d---~~~-~~~-----~~~d~vi~~ag   70 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDINILQKDIFD---LTL-SDL-----SDQNVVVDAYG   70 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSEEEECCGGG---CCH-HHH-----TTCSEEEECCC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCeEEeccccC---hhh-hhh-----cCCCEEEECCc
Confidence            6899996 9999999999998998 9999999988776554 333322 23333   332 222     26999999998


Q ss_pred             Ch--------hhHHHHHHhhhcC-CceEEEeccc
Q 025101          152 LA--------SLVQEAYACCRKG-WGKTIVLGVD  176 (258)
Q Consensus       152 ~~--------~~~~~~~~~l~~~-~G~~v~~g~~  176 (258)
                      ..        ......++.++.. .++++.++..
T Consensus        71 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           71 ISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             SSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            63        1234555565543 2688887654

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.53  E-value=0.00039  Score=55.13  Aligned_cols=78  Identities=22%  Similarity=0.239  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce---EEcCCCCCCccHH-HHHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE---FVNSKNCGDKSVS-QIIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~-~~i~~~~~--~~  142 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++...   ..|..+   ++-. +.+.+...  ++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~g~   85 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTN---EVSVRALIDFTIDTFGR   85 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTC---HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCC---HHHHHHHHHHHHHHcCC
Confidence            5789999986 8999999999988999 899999998876654 4455332   223333   3322 22222211  27


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|+++++.|.
T Consensus        86 id~lv~nAg~   95 (271)
T 3tzq_B           86 LDIVDNNAAH   95 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999998874

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.52  E-value=0.00053  Score=56.89  Aligned_cols=93  Identities=18%  Similarity=0.155  Sum_probs=67.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      ..+|+|+|+|.+|..+++.+.. .. .|.+++++.++.+.+++......+|..+   .+   .+.+... +.|+|++|++
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~d---~~---~l~~~~~-~~DvVi~~~p   86 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDASN---FD---KLVEVMK-EFELVIGALP   86 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTTC---HH---HHHHHHT-TCSEEEECCC
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecCC---HH---HHHHHHh-CCCEEEEecC
Confidence            3579999999999998887754 45 8899999998888877654333345443   22   3333332 6899999999


Q ss_pred             ChhhHHHHHHhhhcCCceEEEec
Q 025101          152 LASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       152 ~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .......+-.|+..+ -.++.+.
T Consensus        87 ~~~~~~v~~~~~~~g-~~yvD~s  108 (365)
T 3abi_A           87 GFLGFKSIKAAIKSK-VDMVDVS  108 (365)
T ss_dssp             GGGHHHHHHHHHHHT-CEEEECC
T ss_pred             CcccchHHHHHHhcC-cceEeee
Confidence            876567777778887 7888776

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.52  E-value=0.0013  Score=52.25  Aligned_cols=79  Identities=20%  Similarity=0.297  Sum_probs=50.6

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-------------CcchHHHH----HhcCCceE---EcCCCCCC
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-------------ISEKFEIG----KRFGVTEF---VNSKNCGD  128 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-------------~~~~~~~~----~~~g~~~v---i~~~~~~~  128 (258)
                      -+|+++||+|+ +++|.++++.+...|+ +|+++++             ++++.+.+    ++.|....   .|..+   
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~---   88 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD---   88 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC---
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC---
Confidence            36889999986 8999999999888999 8999987             44444332    23443322   23333   


Q ss_pred             ccHH-HHHHHhcC--CCCCEEEEecCC
Q 025101          129 KSVS-QIIIDMTD--GGADYCFECVGL  152 (258)
Q Consensus       129 ~~~~-~~i~~~~~--~~~d~v~d~~g~  152 (258)
                      ++-. +.+.+...  +++|+++++.|.
T Consensus        89 ~~~v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           89 DAALRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3322 22222211  279999998874

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.52  E-value=0.00063  Score=52.85  Aligned_cols=77  Identities=17%  Similarity=0.214  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceEE--cCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFV--NSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi--~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. ++....++  |..+   .+..+.+.+. -+++|++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~-~~~id~v   80 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD---WEATERALGS-VGPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTT-CCCCCEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeCCC---HHHHHHHHHH-cCCCCEE
Confidence            5789999987 8999999999988999 8999999887766543 34322233  3322   3322222221 1269999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |++.|.
T Consensus        81 i~~Ag~   86 (244)
T 3d3w_A           81 VNNAAV   86 (244)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            998873

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.52  E-value=0.00052  Score=53.67  Aligned_cols=78  Identities=23%  Similarity=0.254  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc-chHH-HHHhcCCce-E--EcCCCCCCcc-HHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE-IGKRFGVTE-F--VNSKNCGDKS-VSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~~-~~~~~g~~~-v--i~~~~~~~~~-~~~~i~~~~~--~  141 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++ ++.+ .+++.+... .  .|..+   .+ +.+.+.+...  +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ---PGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC---HHHHHHHHHHHHHHcC
Confidence            4789999986 8999999998888999 899999887 5544 344555332 2  23333   33 2222222211  3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|++|++.|.
T Consensus        82 ~id~lv~nAg~   92 (249)
T 2ew8_A           82 RCDILVNNAGI   92 (249)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999998873

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.52  E-value=0.00041  Score=54.15  Aligned_cols=79  Identities=22%  Similarity=0.270  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceE-EcCCCCCCccHHHHHHHhcC--CCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~~~d~  145 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +++|+..+ .|..+  .+++.+.+.+...  +++|+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~id~   80 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD--PASVERGFAEALAHLGRLDG   80 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC--HHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCEEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4689999987 8999999998888999 999999998776654 34553221 23333  1222222222211  26999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      +|++.|.
T Consensus        81 lvn~Ag~   87 (245)
T 1uls_A           81 VVHYAGI   87 (245)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9998873

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.51  E-value=0.00066  Score=53.71  Aligned_cols=100  Identities=18%  Similarity=0.222  Sum_probs=62.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhcCCceE---EcCCCCCCccHH-H---HHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTEF---VNSKNCGDKSVS-Q---IIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~-~~~~~~~~~~----~~~g~~~v---i~~~~~~~~~~~-~---~i~~  137 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++ .+++++.+.+    ++.|....   .|..+   .+-. +   .+.+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~~~v~~~~~~~~~  101 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD---PAAVRRLFATAEE  101 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC---HHHHHHHHHHHHH
Confidence            5789999987 8999999888888899 88877 4455444433    33443322   23333   3322 2   2222


Q ss_pred             hcCCCCCEEEEecCChh-------------------------hHHHHHHhhhcCCceEEEeccc
Q 025101          138 MTDGGADYCFECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      .. +++|++|++.|...                         ..+.++..++.+ |+++.++..
T Consensus       102 ~~-g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS~  163 (267)
T 3u5t_A          102 AF-GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG-GRIINMSTS  163 (267)
T ss_dssp             HH-SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCT
T ss_pred             Hc-CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CeEEEEeCh
Confidence            22 27999999887410                         233455566677 999988753

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.50  E-value=0.0012  Score=52.09  Aligned_cols=79  Identities=23%  Similarity=0.252  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc-----CCc-eE--EcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF-----GVT-EF--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~-----g~~-~v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +++     +.. ..  .|..+  .+++.+.+.+...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   82 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD--QQQLRDTFRKVVD   82 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC--HHHHHHHHHHHHH
Confidence            4789999987 8999999999888999 999999988765432 222     211 12  23333  1222222222211


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|++|++.|.
T Consensus        83 ~~g~id~lv~~Ag~   96 (267)
T 2gdz_A           83 HFGRLDILVNNAGV   96 (267)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence              269999999874

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.50  E-value=0.00043  Score=54.34  Aligned_cols=79  Identities=23%  Similarity=0.382  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce-E--EcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++... .  .|..+  .+++.+.+.+...  +++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI--EEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4789999987 8999999999988999 899999998776544 3454321 2  23333  1222222322221  269


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|++.|.
T Consensus        81 D~lv~nAg~   89 (254)
T 1hdc_A           81 DGLVNNAGI   89 (254)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998873

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.50  E-value=0.0017  Score=52.57  Aligned_cols=75  Identities=16%  Similarity=0.147  Sum_probs=55.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      -.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.. .       .+..+.+.     ..|+||-|++
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~-~-------~~~~~~~~-----~aDvvi~~vp   86 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGASV-C-------ESPAEVIK-----KCKYTIAMLS   86 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEE-C-------SSHHHHHH-----HCSEEEECCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCeE-c-------CCHHHHHH-----hCCEEEEEcC
Confidence            3589999999999999999888999 9999999999999888887632 1       22333332     3788888887


Q ss_pred             ChhhHHHHH
Q 025101          152 LASLVQEAY  160 (258)
Q Consensus       152 ~~~~~~~~~  160 (258)
                      .+..+...+
T Consensus        87 ~~~~~~~v~   95 (310)
T 3doj_A           87 DPCAALSVV   95 (310)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            654344444

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.49  E-value=0.00043  Score=54.31  Aligned_cols=76  Identities=17%  Similarity=0.103  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCce-E--EcCCCCCCccH----HHHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSV----SQIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~----~~~i~~~  138 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.|... +  .|-.+   .+-    .+.+.+.
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARN---EDEVTAFLNAADAH   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCC---HHHHHHHHHHHHhh
Confidence            5789999987 8999999999988999 9999999988765443    234322 2  23333   332    2333333


Q ss_pred             cCCCCCEEEEecCC
Q 025101          139 TDGGADYCFECVGL  152 (258)
Q Consensus       139 ~~~~~d~v~d~~g~  152 (258)
                        +++|++|++.|.
T Consensus        82 --g~id~lv~nAg~   93 (252)
T 3h7a_A           82 --APLEVTIFNVGA   93 (252)
T ss_dssp             --SCEEEEEECCCC
T ss_pred             --CCceEEEECCCc
Confidence              479999998884

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.49  E-value=0.00029  Score=54.44  Aligned_cols=101  Identities=18%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhc----C-CceEEcCCCCCCccHHHHHHHh
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRF----G-VTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      +...+++|++||=+|+|+ |..+..+++..|. .+|++++.+++..+.+++.    + ...+.....    +. +.. ..
T Consensus        71 ~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~----~p-~~~-~~  143 (233)
T 4df3_A           71 IELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDAR----FP-EKY-RH  143 (233)
T ss_dssp             SCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTT----CG-GGG-TT
T ss_pred             hhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEecc----Cc-ccc-cc
Confidence            456789999999999985 8899999998874 3899999999888777542    2 222221111    11 001 11


Q ss_pred             cCCCCCEEEEecCCh----hhHHHHHHhhhcCCceEEEe
Q 025101          139 TDGGADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       139 ~~~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~  173 (258)
                      ..+.+|+||-...-+    ..+..+.+.|+|+ |++++.
T Consensus       144 ~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpG-G~lvI~  181 (233)
T 4df3_A          144 LVEGVDGLYADVAQPEQAAIVVRNARFFLRDG-GYMLMA  181 (233)
T ss_dssp             TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ccceEEEEEEeccCChhHHHHHHHHHHhccCC-CEEEEE
Confidence            122689888544432    2466778889999 998764

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.48  E-value=0.00056  Score=53.83  Aligned_cols=79  Identities=23%  Similarity=0.280  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc-----CCc-eE--EcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVT-EF--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~-----g~~-~v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++     +.. .+  .|..+  .+++.+.+.+...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   82 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE--PGDIDRLFEKARD   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4689999987 8999999998888899 8999999887665432 22     312 22  23333  1222233333322


Q ss_pred             C-CCCEEEEecCC
Q 025101          141 G-GADYCFECVGL  152 (258)
Q Consensus       141 ~-~~d~v~d~~g~  152 (258)
                      . ++|++|++.|.
T Consensus        83 ~~gid~lv~~Ag~   95 (260)
T 2z1n_A           83 LGGADILVYSTGG   95 (260)
T ss_dssp             TTCCSEEEECCCC
T ss_pred             hcCCCEEEECCCC
Confidence            2 49999998873

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.48  E-value=0.0011  Score=53.83  Aligned_cols=78  Identities=12%  Similarity=0.167  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC--c-eE--EcCCCCCCcc-HHHHHHHhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--T-EF--VNSKNCGDKS-VSQIIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~--~-~v--i~~~~~~~~~-~~~~i~~~~  139 (258)
                      .|+++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    ..+.  . .+  .|..+   .+ +.+.+.+..
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~---~~~v~~~~~~~~   82 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS---REGFKMAADEVE   82 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC---HHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC---HHHHHHHHHHHH
Confidence            5789999987 8999999998888999 8999999988765542    2232  2 12  23333   33 222222221


Q ss_pred             --CCCCCEEEEecCC
Q 025101          140 --DGGADYCFECVGL  152 (258)
Q Consensus       140 --~~~~d~v~d~~g~  152 (258)
                        -+++|++|++.|.
T Consensus        83 ~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           83 ARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHTCCEEEEEECCCC
T ss_pred             HhCCCCCEEEECCCc
Confidence              1379999999883

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.48  E-value=0.00066  Score=54.14  Aligned_cols=97  Identities=14%  Similarity=0.094  Sum_probs=64.0

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           74 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      +|||+|+ |.+|..+++.+... |. +|++++|++++...+...++..+ .|..+   .   +.+.+... ++|+||.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~~~~D~~d---~---~~l~~~~~-~~d~vi~~a   73 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSVRQLDYFN---Q---ESMVEAFK-GMDTVVFIP   73 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEEEECCTTC---H---HHHHHHTT-TCSEEEECC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEEEEcCCCC---H---HHHHHHHh-CCCEEEEeC
Confidence            5899997 99999998888877 88 89999999887655444454322 23333   2   23344333 699999998


Q ss_pred             CCh-------hhHHHHHHhhhcC-CceEEEecccCC
Q 025101          151 GLA-------SLVQEAYACCRKG-WGKTIVLGVDQP  178 (258)
Q Consensus       151 g~~-------~~~~~~~~~l~~~-~G~~v~~g~~~~  178 (258)
                      +..       ......++.++.. .++++.++....
T Consensus        74 ~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~  109 (289)
T 3e48_A           74 SIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYAD  109 (289)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred             CCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccCC
Confidence            752       1234555555544 147888876543

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.48  E-value=0.00033  Score=55.02  Aligned_cols=78  Identities=19%  Similarity=0.325  Sum_probs=47.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc-eE--EcCCCCCCcc-HHHHHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EF--VNSKNCGDKS-VSQIIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--i~~~~~~~~~-~~~~i~~~~~--~~  142 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.. .+  .|..+   .+ +.+.+.+...  ++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~g~   81 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTN---EADATAALAFAKQEFGH   81 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTC---HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCC---HHHHHHHHHHHHHHcCC
Confidence            5789999987 8999999999888999 899999988776543 345432 22  23333   33 2222222211  27


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|++.|.
T Consensus        82 id~lv~nAg~   91 (257)
T 3tpc_A           82 VHGLVNCAGT   91 (257)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999998873

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.48  E-value=0.00044  Score=55.17  Aligned_cols=78  Identities=18%  Similarity=0.197  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCce-E--EcCCCCCCccHHH---HHHHhcCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-F--VNSKNCGDKSVSQ---IIIDMTDGG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~-v--i~~~~~~~~~~~~---~i~~~~~~~  142 (258)
                      .|+++||+|+ +++|.++++.+...|+ +|+++++++++.+.+. +++... .  .|..+  .+++..   .+.+.. ++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~-g~   79 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRS--LQDQKRAAERCLAAF-GK   79 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTC--HHHHHHHHHHHHHHH-SC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHHHHHhc-CC
Confidence            4789999986 8999999999988999 9999999988776553 354332 2  23332  122222   222222 27


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|+++++.|.
T Consensus        80 iD~lvnnAg~   89 (281)
T 3zv4_A           80 IDTLIPNAGI   89 (281)
T ss_dssp             CCEEECCCCC
T ss_pred             CCEEEECCCc
Confidence            9999998873

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.47  E-value=0.00058  Score=53.31  Aligned_cols=78  Identities=21%  Similarity=0.259  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCce-E--EcCCCCCCccH-HHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSV-SQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~-~~~i~~~~~-  140 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.|... .  .|..+   ++- .+.+.+... 
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~---~~~~~~~~~~~~~~   81 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVAD---RQGVDAAVASTVEA   81 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC---HHHHHHHHHHHHHH
Confidence            4689999987 8999999999888899 8999999887765432    234322 2  23333   332 222222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|++.|.
T Consensus        82 ~g~id~lv~nAg~   94 (247)
T 2jah_A           82 LGGLDILVNNAGI   94 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999998873

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.47  E-value=0.0008  Score=52.94  Aligned_cols=101  Identities=21%  Similarity=0.217  Sum_probs=62.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEE-cCCcchHHH----HHhcCCc-eE--EcCCCCCCcc-HHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEI----GKRFGVT-EF--VNSKNCGDKS-VSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~-~~~~~~~~~----~~~~g~~-~v--i~~~~~~~~~-~~~~i~~~~~  140 (258)
                      +|+++||+|+ +++|.++++.+...|+ +|+++ .+++++.+.    +++.|.. ..  .|-.+   .+ +...+.+...
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~   82 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTN---AAEVEAAISAAAD   82 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCC---HHHHHHHHHHHHH
Confidence            5789999986 8999999998888899 88888 555544433    2334532 22  23333   33 2222222221


Q ss_pred             --CCCCEEEEecCCh-----------h---------------hHHHHHHhhhcCCceEEEeccc
Q 025101          141 --GGADYCFECVGLA-----------S---------------LVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       141 --~~~d~v~d~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                        +++|+++++.|..           .               ..+.++..+.++ |+++.+++.
T Consensus        83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS~  145 (259)
T 3edm_A           83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKG-GAIVTFSSQ  145 (259)
T ss_dssp             HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCH
T ss_pred             HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CEEEEEcCH
Confidence              2699999988632           0               223444455566 899988753

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.46  E-value=0.0016  Score=51.93  Aligned_cols=34  Identities=29%  Similarity=0.322  Sum_probs=30.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .|+++||+|+ +++|.++++.+...|+ +|++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence            5789999987 8999999999988999 89999876

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.46  E-value=0.00085  Score=53.30  Aligned_cols=102  Identities=20%  Similarity=0.241  Sum_probs=71.7

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhc-----C--Cc--eEEcCCCCCCccHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF-----G--VT--EFVNSKNCGDKSVS  132 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~-----g--~~--~vi~~~~~~~~~~~  132 (258)
                      +.....+.++++||.+|+| .|..+..+++..| ..+|++++.+++..+.+++.     |  ..  .++..      +..
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~------d~~  163 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS------DLA  163 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS------CGG
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEEC------chH
Confidence            3456678899999999998 6888889998753 23999999999888877652     4  22  22221      111


Q ss_pred             HHHHHhcCCCCCEEEEecCCh-hhHHHHHHhhhcCCceEEEec
Q 025101          133 QIIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       133 ~~i~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.  ....+.+|+|+.....+ ..+..+.+.|+++ |+++.+.
T Consensus       164 ~~--~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pg-G~l~~~~  203 (280)
T 1i9g_A          164 DS--ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYV  203 (280)
T ss_dssp             GC--CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred             hc--CCCCCceeEEEECCcCHHHHHHHHHHhCCCC-CEEEEEe
Confidence            10  01123799999766654 5688999999999 9998765

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.46  E-value=0.00063  Score=54.13  Aligned_cols=78  Identities=23%  Similarity=0.276  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-eE--EcCCCCCCcc-HHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKS-VSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~-~~~~i~~~~~-  140 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.+.. ..  .|..+   .+ +.+.+.+... 
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~~v~~~~~~~~~~  106 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ---PDQVRGMLDQMTGE  106 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC---HHHHHHHHHHHHHH
Confidence            5789999986 8999999998888999 9999999988765442    23422 22  23333   33 2222222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|++.|.
T Consensus       107 ~g~iD~lvnnAg~  119 (276)
T 3r1i_A          107 LGGIDIAVCNAGI  119 (276)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             279999998874

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.46  E-value=0.0029  Score=50.36  Aligned_cols=80  Identities=18%  Similarity=0.218  Sum_probs=50.7

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCce-E--EcCCCCCCccHHHHHHHhcC
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      -.++++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+    ++.|... +  .|..+  .+++.+.+.+...
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~  103 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLAD--LSSHQATVDAVVA  103 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTS--GGGHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHH
Confidence            35789999986 8999999999988999 8999885 55544332    3344332 2  23333  1233333332221


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|++|++.|.
T Consensus       104 ~~g~iD~lvnnAg~  117 (280)
T 4da9_A          104 EFGRIDCLVNNAGI  117 (280)
T ss_dssp             HHSCCCEEEEECC-
T ss_pred             HcCCCCEEEECCCc
Confidence              279999998875

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.46  E-value=0.00037  Score=54.59  Aligned_cols=79  Identities=16%  Similarity=0.212  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----c--C-Cc-eE--EcCCCCCCccHHHHHHHhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F--G-VT-EF--VNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~--g-~~-~v--i~~~~~~~~~~~~~i~~~~  139 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+    .  + .. .+  .|..+  .+++.+.+.+..
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   82 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD--CTKADTEIKDIH   82 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC--HHHHHHHHHHHH
Confidence            5789999987 8999999988888899 99999999887655432    1  2 11 22  23333  122222222221


Q ss_pred             C--CCCCEEEEecCC
Q 025101          140 D--GGADYCFECVGL  152 (258)
Q Consensus       140 ~--~~~d~v~d~~g~  152 (258)
                      .  +++|++|++.|.
T Consensus        83 ~~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           83 QKYGAVDILVNAAAM   97 (250)
T ss_dssp             HHHCCEEEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence            1  279999998874

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.46  E-value=0.00057  Score=54.00  Aligned_cols=78  Identities=27%  Similarity=0.312  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc-----CCce-E--EcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVTE-F--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~-----g~~~-v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++     +... .  .|..+  .+++.+.+.+...
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   88 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD--EAQVEAYVTATTE   88 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4789999986 8999999998888899 9999999987765432 21     4321 2  23333  1222222322211


Q ss_pred             --CCCCEEEEecC
Q 025101          141 --GGADYCFECVG  151 (258)
Q Consensus       141 --~~~d~v~d~~g  151 (258)
                        +++|++|++.|
T Consensus        89 ~~g~id~lv~nAg  101 (267)
T 1iy8_A           89 RFGRIDGFFNNAG  101 (267)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence              27999999887

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.46  E-value=0.00059  Score=54.00  Aligned_cols=79  Identities=18%  Similarity=0.360  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H----hcCCce-E--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~----~~g~~~-v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +    +.|... .  .|..+  .+++.+.+.+... 
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN--YEEVKKLLEAVKEK   96 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 8999999999888999 899999988765433 2    235332 2  23333  1222222222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|++.|.
T Consensus        97 ~g~iD~lvnnAg~  109 (267)
T 1vl8_A           97 FGKLDTVVNAAGI  109 (267)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence             279999998874

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.46  E-value=0.00057  Score=53.84  Aligned_cols=79  Identities=30%  Similarity=0.425  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----CCce-E--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVTE-F--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g~~~-v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. ++    +... +  .|..+  .+++.+.+.+... 
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT--PEGVDAVVESVRSS   82 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4789999986 8999999999888999 9999999887755432 22    4322 2  23333  1222222222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|++.|.
T Consensus        83 ~g~id~lv~~Ag~   95 (263)
T 3ai3_A           83 FGGADILVNNAGT   95 (263)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             269999998873

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.45  E-value=0.002  Score=51.12  Aligned_cols=33  Identities=36%  Similarity=0.371  Sum_probs=29.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      .|+++||+|+ +++|.++++.+...|+ +|+++++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r   43 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDI   43 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEec
Confidence            5789999986 8999999999988999 8999987

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.45  E-value=0.00057  Score=54.29  Aligned_cols=78  Identities=19%  Similarity=0.236  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---cCCce-E--EcCCCCCCccHHHHHHHhc--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVTE-F--VNSKNCGDKSVSQIIIDMT--DG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~---~g~~~-v--i~~~~~~~~~~~~~i~~~~--~~  141 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|++++++++..+.+++   .+... .  .|..+   .+-.+.+.+..  .+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADLAD---LEGAANVAEELAATR  105 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTC---HHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCC---HHHHHHHHHHHHhcC
Confidence            5789999986 8999999998888999 89999876544444433   33321 1  23333   33333332221  13


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|++|++.|.
T Consensus       106 ~iD~lv~nAg~  116 (273)
T 3uf0_A          106 RVDVLVNNAGI  116 (273)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            79999998874

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.45  E-value=0.00023  Score=54.86  Aligned_cols=103  Identities=16%  Similarity=0.149  Sum_probs=68.7

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcC-
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~-  140 (258)
                      ....++.+||.+|+| .|..++.+++.++ ..+|++++.+++..+.+++    .|...-+....   .+..+.+.++.. 
T Consensus        65 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~---~d~~~~~~~~~~~  140 (229)
T 2avd_A           65 ARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL---KPALETLDELLAA  140 (229)
T ss_dssp             HHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHHHT
T ss_pred             HHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE---cCHHHHHHHHHhc
Confidence            345678899999998 5888899998763 3399999999988877765    34321111111   234444433321 


Q ss_pred             ---CCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          141 ---GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ---~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                         +.+|+||-....   ...+..+.+.++++ |.++...
T Consensus       141 ~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~  179 (229)
T 2avd_A          141 GEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLR  179 (229)
T ss_dssp             TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEC
Confidence               479999854332   24488899999999 9988754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.45  E-value=0.0014  Score=53.23  Aligned_cols=88  Identities=16%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+.+.     ..|+||-|+.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~--------~~~~e~~~-----~aDvVi~~vp   96 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGATIH--------EQARAAAR-----DADIVVSMLE   96 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCEEE--------SSHHHHHT-----TCSEEEECCS
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCEee--------CCHHHHHh-----cCCEEEEECC
Confidence            4689999999999999998888899 89999999999888877775322        12222221     5788888888


Q ss_pred             ChhhHHHHHH------hhhcCCceEEEec
Q 025101          152 LASLVQEAYA------CCRKGWGKTIVLG  174 (258)
Q Consensus       152 ~~~~~~~~~~------~l~~~~G~~v~~g  174 (258)
                      .+..+...+.      .+.++ ..++.++
T Consensus        97 ~~~~~~~v~~~~~~~~~l~~~-~~vi~~s  124 (320)
T 4dll_A           97 NGAVVQDVLFAQGVAAAMKPG-SLFLDMA  124 (320)
T ss_dssp             SHHHHHHHHTTTCHHHHCCTT-CEEEECS
T ss_pred             CHHHHHHHHcchhHHhhCCCC-CEEEecC
Confidence            6543544442      34454 5555554

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.44  E-value=0.001  Score=52.20  Aligned_cols=96  Identities=21%  Similarity=0.296  Sum_probs=66.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      +.++++||-+|+|. |..++.+++ .|. +|++++.++...+.+++    .+..  +....   .++.+.   ...+.+|
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~---~d~~~~---~~~~~fD  186 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLE---GSLEAA---LPFGPFD  186 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEE---SCHHHH---GGGCCEE
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEE---CChhhc---CcCCCCC
Confidence            57889999999976 777777776 588 99999999998887765    3432  11111   233332   2234799


Q ss_pred             EEEEecCC---hhhHHHHHHhhhcCCceEEEeccc
Q 025101          145 YCFECVGL---ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       145 ~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      +|+.+...   ...+..+.+.++|+ |++++.+..
T Consensus       187 ~Vv~n~~~~~~~~~l~~~~~~Lkpg-G~lils~~~  220 (254)
T 2nxc_A          187 LLVANLYAELHAALAPRYREALVPG-GRALLTGIL  220 (254)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEEE
T ss_pred             EEEECCcHHHHHHHHHHHHHHcCCC-CEEEEEeec
Confidence            99965432   23477888899999 999887643

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.44  E-value=0.00049  Score=53.68  Aligned_cols=77  Identities=18%  Similarity=0.293  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-Cc-eEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-VT-EFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+++ +. ...|..+   .+..+.+.+.. +++|++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~-~~id~lv   79 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEV-ERLDVLF   79 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHC-SCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCCC---HHHHHHHHHHh-CCCCEEE
Confidence            4789999987 8999999998888999 9999999887665443332 21 1223333   44334443333 3799999


Q ss_pred             EecCC
Q 025101          148 ECVGL  152 (258)
Q Consensus       148 d~~g~  152 (258)
                      ++.|.
T Consensus        80 ~~Ag~   84 (246)
T 2ag5_A           80 NVAGF   84 (246)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            98873

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.44  E-value=0.00049  Score=54.11  Aligned_cols=77  Identities=22%  Similarity=0.258  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCce-E--EcCCCCCCccH-HHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-F--VNSKNCGDKSV-SQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~-v--i~~~~~~~~~~-~~~i~~~~~-  140 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+    .+... +  .|..+   ++- .+.+.+... 
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~   80 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRN---TDDIQKMIEQIDEK   80 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC---HHHHHHHHHHHHHH
Confidence            4789999986 8999999999988999 89999999887665432    23221 2  23333   332 222222211 


Q ss_pred             -CCCCEEEEecC
Q 025101          141 -GGADYCFECVG  151 (258)
Q Consensus       141 -~~~d~v~d~~g  151 (258)
                       +++|++|++.|
T Consensus        81 ~g~id~lv~nAg   92 (257)
T 3imf_A           81 FGRIDILINNAA   92 (257)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence             27999999888

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.43  E-value=0.00061  Score=53.30  Aligned_cols=77  Identities=25%  Similarity=0.277  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCce-E--EcCCCCCCccHH-H---HHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVS-Q---IIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~~-~---~i~~~  138 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+... +  .|..+   .+-. +   .+.+.
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~   83 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSD---PESAKAMADRTLAE   83 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTS---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCC---HHHHHHHHHHHHHH
Confidence            5789999987 8999999999988999 8999999988765542    234321 2  23332   3322 2   22222


Q ss_pred             cCCCCCEEEEecCC
Q 025101          139 TDGGADYCFECVGL  152 (258)
Q Consensus       139 ~~~~~d~v~d~~g~  152 (258)
                      . +++|++|.+.|.
T Consensus        84 ~-g~id~li~~Ag~   96 (253)
T 3qiv_A           84 F-GGIDYLVNNAAI   96 (253)
T ss_dssp             H-SCCCEEEECCCC
T ss_pred             c-CCCCEEEECCCc
Confidence            2 279999998874

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.43  E-value=0.00074  Score=52.86  Aligned_cols=98  Identities=12%  Similarity=0.158  Sum_probs=63.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcC--CCCCEEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYCF  147 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~--~~~d~v~  147 (258)
                      -++++||+|+ |++|.++++.+...|+ +|+++++++++.+.     ....++..+  .+++...+.+...  +.+|++|
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~d~~d--~~~v~~~~~~~~~~~g~iD~li   92 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNAD-----HSFTIKDSG--EEEIKSVIEKINSKSIKVDTFV   92 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSS-----EEEECSCSS--HHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----cceEEEeCC--HHHHHHHHHHHHHHcCCCCEEE
Confidence            3689999987 8999999999988999 89999998765421     112233222  1233333333322  2799999


Q ss_pred             EecCCh-------h-------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          148 ECVGLA-------S-------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       148 d~~g~~-------~-------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      .+.|..       .                   ..+.+...++++ |+++.++...
T Consensus        93 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~  147 (251)
T 3orf_A           93 CAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG-GLFVLTGASA  147 (251)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGG
T ss_pred             ECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC-CEEEEEechh
Confidence            988730       0                   133444555667 8999987543

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.43  E-value=0.00045  Score=55.11  Aligned_cols=79  Identities=20%  Similarity=0.262  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc---CCceEEcCCCCCCccHHHH----HHHhcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---GVTEFVNSKNCGDKSVSQI----IIDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~---g~~~vi~~~~~~~~~~~~~----i~~~~~~  141 (258)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++   +....+-.-+.++++..+.    +.+.. +
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g   84 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF-G   84 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence            5789999987 8999999998888999 8999999988765543 22   3322221222222333222    22222 2


Q ss_pred             CCCEEEEecC
Q 025101          142 GADYCFECVG  151 (258)
Q Consensus       142 ~~d~v~d~~g  151 (258)
                      ++|++|++.|
T Consensus        85 ~iD~lvnnAg   94 (280)
T 3tox_A           85 GLDTAFNNAG   94 (280)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999887

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.42  E-value=0.0006  Score=56.14  Aligned_cols=77  Identities=26%  Similarity=0.257  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch-----------HHHHHhcCCceE---EcCCCCCCccHH-H-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-----------FEIGKRFGVTEF---VNSKNCGDKSVS-Q-  133 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~-----------~~~~~~~g~~~v---i~~~~~~~~~~~-~-  133 (258)
                      +|+++||+|+ +++|.++++.+...|+ +|+++++++++           .+.+++.|....   .|..+   ++-. + 
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d---~~~v~~~  119 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD---EQQISAA  119 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC---HHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC---HHHHHHH
Confidence            5789999987 8999999998888899 99999988764           223344553322   24433   3322 2 


Q ss_pred             --HHHHhcCCCCCEEEEecCC
Q 025101          134 --IIIDMTDGGADYCFECVGL  152 (258)
Q Consensus       134 --~i~~~~~~~~d~v~d~~g~  152 (258)
                        .+.+.. +++|++|++.|.
T Consensus       120 ~~~~~~~~-g~iDilVnnAG~  139 (346)
T 3kvo_A          120 VEKAIKKF-GGIDILVNNASA  139 (346)
T ss_dssp             HHHHHHHH-SCCCEEEECCCC
T ss_pred             HHHHHHHc-CCCCEEEECCCC
Confidence              222222 279999999884

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.42  E-value=0.00011  Score=57.23  Aligned_cols=97  Identities=13%  Similarity=0.123  Sum_probs=67.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC----Cc-eEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----VT-EFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g----~~-~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      ..+|.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++..    .. .++.      .+....+.....+.|
T Consensus        58 ~~~G~rVLdiG~G~-G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~F  129 (236)
T 3orh_A           58 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK------GLWEDVAPTLPDGHF  129 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE------SCHHHHGGGSCTTCE
T ss_pred             ccCCCeEEEECCCc-cHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEe------ehHHhhcccccccCC
Confidence            36899999999984 7888888877666 8999999999888887643    21 2222      223333333333479


Q ss_pred             CEEE-EecCC----------hhhHHHHHHhhhcCCceEEEec
Q 025101          144 DYCF-ECVGL----------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       144 d~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      |.|+ |+...          ...+.++.++|+|+ |+++.+.
T Consensus       130 D~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG-G~l~f~~  170 (236)
T 3orh_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN  170 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred             ceEEEeeeecccchhhhcchhhhhhhhhheeCCC-CEEEEEe
Confidence            9884 76543          12467788999999 9998764

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.42  E-value=0.00061  Score=54.00  Aligned_cols=78  Identities=19%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceE--EcCCCCCCcc-HHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF--VNSKNCGDKS-VSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v--i~~~~~~~~~-~~~~i~~~~~--~~~  143 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++.....  .|..+   .+ +.+.+.+...  +++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~~g~i   83 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ---EDDVKTLVSETIRRFGRL   83 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS---HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCC---HHHHHHHHHHHHHHcCCC
Confidence            5789999986 8999999999988999 8999999987766543 3332122  23333   32 2222222211  279


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|++.|.
T Consensus        84 D~lv~nAg~   92 (270)
T 1yde_A           84 DCVVNNAGH   92 (270)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998863

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.42  E-value=0.00091  Score=53.04  Aligned_cols=78  Identities=19%  Similarity=0.264  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCccHH----HHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVS----QIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~----~~i~~~  138 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.|... .  .|..+   ++-.    +.+.+.
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS---RTERDKLMQTVAHV   95 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC---HHHHHHHHHHHHHH
Confidence            4789999986 8999999999988999 899999998765543    2234322 1  23333   3322    233333


Q ss_pred             cCCCCCEEEEecCC
Q 025101          139 TDGGADYCFECVGL  152 (258)
Q Consensus       139 ~~~~~d~v~d~~g~  152 (258)
                      .++++|++|++.|.
T Consensus        96 ~~g~id~lv~nAg~  109 (273)
T 1ae1_A           96 FDGKLNILVNNAGV  109 (273)
T ss_dssp             TTSCCCEEEECCCC
T ss_pred             cCCCCcEEEECCCC
Confidence            32579999998874

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0014  Score=51.41  Aligned_cols=77  Identities=19%  Similarity=0.286  Sum_probs=49.3

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHH-hcCCceE---EcCCCCCCccHH-HHHHHhcC--C
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGK-RFGVTEF---VNSKNCGDKSVS-QIIIDMTD--G  141 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~-~~g~~~v---i~~~~~~~~~~~-~~i~~~~~--~  141 (258)
                      |+++||+|+ +++|.++++.+...|  + +|+.+++++++.+.+. +++....   .|..+   .+-. +.+.+...  +
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYGDRFFYVVGDITE---DSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHGGGEEEEESCTTS---HHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhCCceEEEECCCCC---HHHHHHHHHHHHHhcC
Confidence            578999986 899999887766554  6 8888999988776554 3453222   23333   3322 22222211  3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|+++++.|.
T Consensus        78 ~id~lvnnAg~   88 (254)
T 3kzv_A           78 KIDSLVANAGV   88 (254)
T ss_dssp             CCCEEEEECCC
T ss_pred             CccEEEECCcc
Confidence            79999998874

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.41  E-value=0.0009  Score=52.63  Aligned_cols=77  Identities=16%  Similarity=0.192  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---hcCCce-E--EcCCCCCCcc-HH---HHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K---RFGVTE-F--VNSKNCGDKS-VS---QIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~---~~g~~~-v--i~~~~~~~~~-~~---~~i~~~  138 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +   +.|... +  .|..+   .+ +.   +.+.+.
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS---RSERQELMNTVANH   83 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC---HHHHHHHHHHHHHH
Confidence            4789999986 8999999998888999 899999988765543 2   234321 1  23333   32 22   223333


Q ss_pred             cCCCCCEEEEecC
Q 025101          139 TDGGADYCFECVG  151 (258)
Q Consensus       139 ~~~~~d~v~d~~g  151 (258)
                      .++++|++|++.|
T Consensus        84 ~~g~id~lv~~Ag   96 (260)
T 2ae2_A           84 FHGKLNILVNNAG   96 (260)
T ss_dssp             TTTCCCEEEECCC
T ss_pred             cCCCCCEEEECCC
Confidence            3247999999887

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.41  E-value=0.0012  Score=50.91  Aligned_cols=77  Identities=21%  Similarity=0.216  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-----hcCCceE---EcCCCCCCccHHH----HHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-----RFGVTEF---VNSKNCGDKSVSQ----IIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-----~~g~~~v---i~~~~~~~~~~~~----~i~~  137 (258)
                      +++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+.     +.+....   .|..+   .+-.+    .+.+
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~   76 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK---AESVEEFSKKVLE   76 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC---HHHHHHHCC-HHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC---HHHHHHHHHHHHH
Confidence            3678999986 8999999999999999 8999999987765432     3343322   23333   33222    2222


Q ss_pred             hcCCCCCEEEEecCC
Q 025101          138 MTDGGADYCFECVGL  152 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~  152 (258)
                      .. +++|++|++.|.
T Consensus        77 ~~-g~id~li~~Ag~   90 (235)
T 3l77_A           77 RF-GDVDVVVANAGL   90 (235)
T ss_dssp             HH-SSCSEEEECCCC
T ss_pred             hc-CCCCEEEECCcc
Confidence            22 269999998874

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.41  E-value=0.00078  Score=52.97  Aligned_cols=79  Identities=28%  Similarity=0.379  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc-eE--EcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++.. .+  .|..+  .+++.+.+.+...  +++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   87 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS--EKDVQTALALAKGKFGRV   87 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHHCCCC
Confidence            4789999987 8999999999988999 899999988776544 445533 22  23333  1222222222211  279


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|.+.|.
T Consensus        88 d~li~~Ag~   96 (265)
T 2o23_A           88 DVAVNCAGI   96 (265)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999998873

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.41  E-value=0.00038  Score=52.58  Aligned_cols=133  Identities=17%  Similarity=0.250  Sum_probs=80.0

Q ss_pred             ceeeeEE-EecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEc
Q 025101           25 SFSEYTV-LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  103 (258)
Q Consensus        25 ~~~~~~~-v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~  103 (258)
                      .|.+|.. .+....+.++..+.+..+.. + ........+..  .+.++.+||-+|+|. |..+..+++ .|..+|++++
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~-~~~~~~~~l~~--~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD   90 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH-Q-TTQLAMLGIER--AMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATD   90 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCH-H-HHHHHHHHHHH--HCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCC-c-cHHHHHHHHHH--hccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEE
Confidence            4778877 67778888887776655421 1 11111111111  156889999999875 777777776 4655999999


Q ss_pred             CCcchHHHHHh----cCCc--eEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChh---hHHHHHHhhhcCCceEEEec
Q 025101          104 VISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS---LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       104 ~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~---~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .+++..+.+++    .+..  .++..+-   .+       ...+.+|+|+.......   .+..+.+.++++ |+++..+
T Consensus        91 ~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~-------~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  159 (205)
T 3grz_A           91 ISDESMTAAEENAALNGIYDIALQKTSL---LA-------DVDGKFDLIVANILAEILLDLIPQLDSHLNED-GQVIFSG  159 (205)
T ss_dssp             SCHHHHHHHHHHHHHTTCCCCEEEESST---TT-------TCCSCEEEEEEESCHHHHHHHGGGSGGGEEEE-EEEEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCceEEEeccc---cc-------cCCCCceEEEECCcHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            99988877765    3432  2332221   11       12247999997654432   245666778898 9988754

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.41  E-value=0.00092  Score=52.44  Aligned_cols=103  Identities=16%  Similarity=0.204  Sum_probs=71.9

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc----eEEcCCCCCCccHHHHHHHh
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT----EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~----~vi~~~~~~~~~~~~~i~~~  138 (258)
                      +.....+.++.+||-+|+| .|..+..+++..|. +|++++.+++..+.+++....    .++..+-   .++     ..
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~-----~~  116 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDI---LTK-----EF  116 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCT---TTC-----CC
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc---ccC-----CC
Confidence            3455677889999999998 58888888887787 999999999999988875421    2222111   111     11


Q ss_pred             cCCCCCEEEEecCC--------hhhHHHHHHhhhcCCceEEEeccc
Q 025101          139 TDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       139 ~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ..+.+|+|+....-        ...+..+.+.|+|+ |.++.....
T Consensus       117 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  161 (266)
T 3ujc_A          117 PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT-GTLLITDYC  161 (266)
T ss_dssp             CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEEE
T ss_pred             CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC-CEEEEEEec
Confidence            12379999975332        22477888999999 999877643

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.40  E-value=0.0016  Score=52.27  Aligned_cols=87  Identities=17%  Similarity=0.160  Sum_probs=61.8

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|.. +  .     .+..+.+.     +.|+||.|++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~--~-----~~~~~~~~-----~~D~vi~~v~~   71 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAE-T--A-----STAKAIAE-----QCDVIITMLPN   71 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-E--C-----SSHHHHHH-----HCSEEEECCSS
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCe-e--c-----CCHHHHHh-----CCCEEEEECCC
Confidence            379999999999999888888898 899999999988888777653 1  1     22333332     48999999986


Q ss_pred             hhhHHHHH-------HhhhcCCceEEEec
Q 025101          153 ASLVQEAY-------ACCRKGWGKTIVLG  174 (258)
Q Consensus       153 ~~~~~~~~-------~~l~~~~G~~v~~g  174 (258)
                      +..+...+       ..+.++ ..++.++
T Consensus        72 ~~~~~~~~~~~~~l~~~l~~~-~~vv~~s   99 (299)
T 1vpd_A           72 SPHVKEVALGENGIIEGAKPG-TVLIDMS   99 (299)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred             HHHHHHHHhCcchHhhcCCCC-CEEEECC
Confidence            65455444       345555 5565554

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.40  E-value=0.00021  Score=53.05  Aligned_cols=99  Identities=15%  Similarity=0.194  Sum_probs=66.7

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc--eEEcCCCCCCccHHHHHHHhc
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ...+++|++||-+|+|. |..+..+++. +. +|++++.+++..+.+++    .|..  .++....   .+    +....
T Consensus        17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~---~~----l~~~~   86 (185)
T 3mti_A           17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELILDGH---EN----LDHYV   86 (185)
T ss_dssp             HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCG---GG----GGGTC
T ss_pred             HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcH---HH----HHhhc
Confidence            34567899999999875 8888888887 76 99999999988877754    3432  2332111   11    11222


Q ss_pred             CCCCCEEEEecCC-----------h----hhHHHHHHhhhcCCceEEEecc
Q 025101          140 DGGADYCFECVGL-----------A----SLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       140 ~~~~d~v~d~~g~-----------~----~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ++.||+|+-+.+.           .    ..+..+.+.|+|+ |+++.+..
T Consensus        87 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~  136 (185)
T 3mti_A           87 REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG-GRLAIMIY  136 (185)
T ss_dssp             CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            3379999865321           1    2357888999999 99987653

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.40  E-value=0.00091  Score=51.89  Aligned_cols=75  Identities=16%  Similarity=0.243  Sum_probs=50.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcC--CCCCEEE
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADYCF  147 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~~~d~v~  147 (258)
                      ++++||+|+ |++|.++++.+...|+ +|+++++++++  ..+++|+..+ .|..+   ++..+.+.+...  +++|+++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~g~id~lv   75 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGAVPLPTDLEK---DDPKGLVKRALEALGGLHVLV   75 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTCEEEECCTTT---SCHHHHHHHHHHHHTSCCEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCcEEEecCCch---HHHHHHHHHHHHHcCCCCEEE
Confidence            578999987 8999999999988999 89999998766  3344553221 23322   344433333221  2699999


Q ss_pred             EecCC
Q 025101          148 ECVGL  152 (258)
Q Consensus       148 d~~g~  152 (258)
                      ++.|.
T Consensus        76 ~~Ag~   80 (239)
T 2ekp_A           76 HAAAV   80 (239)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            98873

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.40  E-value=0.0011  Score=51.35  Aligned_cols=75  Identities=16%  Similarity=0.226  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-c-CCceEE--cCCCCCCccHHHHHHHhcCCCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F-GVTEFV--NSKNCGDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~-g~~~vi--~~~~~~~~~~~~~i~~~~~~~~d~  145 (258)
                      +++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+ . +. .++  |..+   .+..+.+.+. -+++|+
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~D~~~---~~~~~~~~~~-~~~id~   79 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGI-EPVCVDLGD---WDATEKALGG-IGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTC-EEEECCTTC---HHHHHHHHTT-CCCCSE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCC-CcEEecCCC---HHHHHHHHHH-cCCCCE
Confidence            4789999987 9999999999888999 89999998877655433 3 33 233  3322   3322222221 126999


Q ss_pred             EEEecC
Q 025101          146 CFECVG  151 (258)
Q Consensus       146 v~d~~g  151 (258)
                      +|++.|
T Consensus        80 vi~~Ag   85 (244)
T 1cyd_A           80 LVNNAA   85 (244)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999887

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.40  E-value=0.0011  Score=52.73  Aligned_cols=99  Identities=11%  Similarity=0.140  Sum_probs=69.6

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCc---eEEcCCCCCCccHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT---EFVNSKNCGDKSVSQII  135 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~i  135 (258)
                      +.....+.++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++.    |..   .++..      ++    
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~------d~----  123 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLA------GW----  123 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES------CG----
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC------Ch----
Confidence            34556678899999999975 8888889977798 999999999888877652    321   12211      11    


Q ss_pred             HHhcCCCCCEEEEe-----cCC---hhhHHHHHHhhhcCCceEEEecc
Q 025101          136 IDMTDGGADYCFEC-----VGL---ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       136 ~~~~~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      .+.. +.+|+|+..     .+.   ...+..+.+.|+|+ |++++...
T Consensus       124 ~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  169 (287)
T 1kpg_A          124 EQFD-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI  169 (287)
T ss_dssp             GGCC-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred             hhCC-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC-CEEEEEEe
Confidence            1121 479999864     221   34578889999999 99887653

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.40  E-value=0.00046  Score=55.44  Aligned_cols=77  Identities=16%  Similarity=0.214  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc---CC-c-eE--EcCCCCCCccHH-H---HHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---GV-T-EF--VNSKNCGDKSVS-Q---IIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~---g~-~-~v--i~~~~~~~~~~~-~---~i~~  137 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++   +. . .+  .|-.+   .+-. +   .+.+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~  115 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD---PGSCADAARTVVD  115 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC---HHHHHHHHHHHHH
Confidence            5789999986 8999999999988999 9999999988765442 22   31 1 12  23333   3322 2   2222


Q ss_pred             hcCCCCCEEEEecCC
Q 025101          138 MTDGGADYCFECVGL  152 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~  152 (258)
                      .. +++|++|++.|.
T Consensus       116 ~~-g~iD~lvnnAg~  129 (293)
T 3rih_A          116 AF-GALDVVCANAGI  129 (293)
T ss_dssp             HH-SCCCEEEECCCC
T ss_pred             Hc-CCCCEEEECCCC
Confidence            22 279999998874

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.40  E-value=0.0026  Score=49.73  Aligned_cols=80  Identities=15%  Similarity=0.229  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhc--CCc-eE--EcCCCCCC-ccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRF--GVT-EF--VNSKNCGD-KSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~--~~~~~~~~--g~~-~v--i~~~~~~~-~~~~~~i~~~~~-  140 (258)
                      +++++||+|+ |++|..+++.+...|+++|++++++++  ..+.+++.  +.. .+  .|..+  . +++.+.+.+... 
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTV--PVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS--CHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCC--ChHHHHHHHHHHHHh
Confidence            4689999986 899999999988899933888888763  33333332  222 12  23333  1 223222332221 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|++.|.
T Consensus        82 ~g~id~lv~~Ag~   94 (254)
T 1sby_A           82 LKTVDILINGAGI   94 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence             279999999873

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.39  E-value=0.0022  Score=54.02  Aligned_cols=96  Identities=15%  Similarity=0.190  Sum_probs=67.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEE-cCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      .+..|+|+|.|.+|+.+++.++..|. .|++++.++++.+.+++.|...++ |..+   .+   .+++.--..+|+|+-+
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~GDat~---~~---~L~~agi~~A~~viv~   75 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFYGDATR---MD---LLESAGAAKAEVLINA   75 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEESCTTC---HH---HHHHTTTTTCSEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEEcCCCC---HH---HHHhcCCCccCEEEEC
Confidence            35679999999999999999999999 899999999999999998875443 3333   22   2333211279999999


Q ss_pred             cCChhhHHHH---HHhhhcCCceEEEec
Q 025101          150 VGLASLVQEA---YACCRKGWGKTIVLG  174 (258)
Q Consensus       150 ~g~~~~~~~~---~~~l~~~~G~~v~~g  174 (258)
                      +++...-..+   .+.+.|. .+++.-.
T Consensus        76 ~~~~~~n~~i~~~ar~~~p~-~~Iiara  102 (413)
T 3l9w_A           76 IDDPQTNLQLTEMVKEHFPH-LQIIARA  102 (413)
T ss_dssp             CSSHHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred             CCChHHHHHHHHHHHHhCCC-CeEEEEE
Confidence            9986533333   3334455 5665543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.39  E-value=0.00017  Score=58.61  Aligned_cols=103  Identities=21%  Similarity=0.258  Sum_probs=69.2

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHh
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      .....++++++||.+|+|. |..+..+++..+. .+|++++.+++..+.+++    .|...+ ....   .+..+...  
T Consensus        68 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v-~~~~---~d~~~~~~--  140 (317)
T 1dl5_A           68 MEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENV-IFVC---GDGYYGVP--  140 (317)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEE---SCGGGCCG--
T ss_pred             HHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCe-EEEE---CChhhccc--
Confidence            4566788999999999986 8888888886541 379999999988877765    353321 1111   11111011  


Q ss_pred             cCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          139 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..+.+|+|+...........+.+.|+|+ |+++..-
T Consensus       141 ~~~~fD~Iv~~~~~~~~~~~~~~~Lkpg-G~lvi~~  175 (317)
T 1dl5_A          141 EFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVPI  175 (317)
T ss_dssp             GGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEEB
T ss_pred             cCCCeEEEEEcCCHHHHHHHHHHhcCCC-cEEEEEE
Confidence            1237999997766555456788899999 9987653

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.39  E-value=0.00043  Score=55.75  Aligned_cols=94  Identities=13%  Similarity=0.026  Sum_probs=63.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhcCCc--eEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      ++++++|+|+|++|.+++..+...|+.+|+++.|+.++.+ ++++++..  .+++        + +.+.+... ++|+||
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~--------~-~~~~~~~~-~aDivI  209 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS--------L-AEAETRLA-EYDIII  209 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC--------H-HHHHHTGG-GCSEEE
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee--------H-HHHHhhhc-cCCEEE
Confidence            5789999999999999999999899878999999988865 44556642  2221        1 12333222 699999


Q ss_pred             EecCChhh-----HHHHHHhhhcCCceEEEecc
Q 025101          148 ECVGLASL-----VQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       148 d~~g~~~~-----~~~~~~~l~~~~G~~v~~g~  175 (258)
                      +|++....     .......+.++ ..++.+..
T Consensus       210 n~t~~~~~~~~~~~~i~~~~l~~~-~~v~D~~y  241 (297)
T 2egg_A          210 NTTSVGMHPRVEVQPLSLERLRPG-VIVSDIIY  241 (297)
T ss_dssp             ECSCTTCSSCCSCCSSCCTTCCTT-CEEEECCC
T ss_pred             ECCCCCCCCCCCCCCCCHHHcCCC-CEEEEcCC
Confidence            99986541     01112345666 66777764

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.39  E-value=0.00076  Score=53.62  Aligned_cols=79  Identities=16%  Similarity=0.217  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCccHHHHHHHhc--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~--~  140 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.|... +  .|..+  .+++.+.+.+..  -
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS--VPEIEALVAAVVERY   97 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4789999986 8999999999888999 899999998765433    2234321 2  23333  122222222221  1


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|++|++.|.
T Consensus        98 g~iD~lv~~Ag~  109 (277)
T 2rhc_B           98 GPVDVLVNNAGR  109 (277)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            369999998873

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.38  E-value=0.0012  Score=52.21  Aligned_cols=87  Identities=14%  Similarity=0.125  Sum_probs=63.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      +++++|+|+|++|.+++..+...|. +|+++.|+.+|.+.+.++|+. .....+     +       .  .+|+||+|++
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~~~-~~~~~~-----l-------~--~~DiVInaTp  181 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLGCD-CFMEPP-----K-------S--AFDLIINATS  181 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHTCE-EESSCC-----S-------S--CCSEEEECCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe-EecHHH-----h-------c--cCCEEEEccc
Confidence            8899999999999999999999995 999999999987665577753 443332     1       1  6999999987


Q ss_pred             Chh------hHHHHHHhhhcCCceEEEecc
Q 025101          152 LAS------LVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       152 ~~~------~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ...      ..+.....++++ ..++.+..
T Consensus       182 ~Gm~~~~~l~~~~l~~~l~~~-~~v~D~vY  210 (269)
T 3phh_A          182 ASLHNELPLNKEVLKGYFKEG-KLAYDLAY  210 (269)
T ss_dssp             TCCCCSCSSCHHHHHHHHHHC-SEEEESCC
T ss_pred             CCCCCCCCCChHHHHhhCCCC-CEEEEeCC
Confidence            431      112222357777 77777753

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.38  E-value=0.00063  Score=53.61  Aligned_cols=78  Identities=21%  Similarity=0.256  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCce-E--EcCCCCCCcc-HHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKS-VSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~-~~~~i~~~~~-  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+... +  .|..+   .+ +.+.+.+... 
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH---SDAIAAFATGVLAA  103 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC---HHHHHHHHHHHHHh
Confidence            5789999986 8999999988888899 8999999988765442    234322 2  23333   33 2222222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +.+|++|.+.|.
T Consensus       104 ~g~id~lv~~Ag~  116 (262)
T 3rkr_A          104 HGRCDVLVNNAGV  116 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence             279999998875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.37  E-value=0.0016  Score=49.93  Aligned_cols=95  Identities=16%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      .|.+|||+|+|.+|...++.+...|+ +|++++.... ..+.+.+.|.-..+. ....+++       +  .++|+||-+
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~~~~i~~i~-~~~~~~d-------L--~~adLVIaA   98 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEAKGQLRVKR-KKVGEED-------L--LNVFFIVVA   98 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHHTTSCEEEC-SCCCGGG-------S--SSCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHcCCcEEEE-CCCCHhH-------h--CCCCEEEEC
Confidence            58999999999999999999999999 8998876543 223333333222332 2211111       1  179999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      ++.+. ++..+...+.. |..+.....+.
T Consensus        99 T~d~~-~N~~I~~~ak~-gi~VNvvD~p~  125 (223)
T 3dfz_A           99 TNDQA-VNKFVKQHIKN-DQLVNMASSFS  125 (223)
T ss_dssp             CCCTH-HHHHHHHHSCT-TCEEEC-----
T ss_pred             CCCHH-HHHHHHHHHhC-CCEEEEeCCcc
Confidence            99988 66555555556 88877665443

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.37  E-value=0.00077  Score=53.64  Aligned_cols=76  Identities=22%  Similarity=0.311  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce-E--EcCCCCCCccHHHHHHHhcC-CCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD-GGAD  144 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~-~~~d  144 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++... +  .|..+  .+++.+.+.+... +++|
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~~id  105 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTS--EDSVLAAIEAANQLGRLR  105 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHhCCCC
Confidence            5789999987 8999999998888999 899999998877654 4455432 2  23333  1223333333311 2689


Q ss_pred             EEEEe
Q 025101          145 YCFEC  149 (258)
Q Consensus       145 ~v~d~  149 (258)
                      +++.+
T Consensus       106 ~lv~~  110 (281)
T 3ppi_A          106 YAVVA  110 (281)
T ss_dssp             EEEEC
T ss_pred             eEEEc
Confidence            99987

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.37  E-value=0.00074  Score=53.96  Aligned_cols=77  Identities=25%  Similarity=0.302  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch-----------HHHHHhcCCce-EE--cCCCCCCcc-HH--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-----------FEIGKRFGVTE-FV--NSKNCGDKS-VS--  132 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~-----------~~~~~~~g~~~-vi--~~~~~~~~~-~~--  132 (258)
                      +++++||+|+ +++|.++++.+...|+ +|+++++++++           .+.+++.+... .+  |..+   .+ +.  
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~   83 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRD---GDAVAAA   83 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTS---HHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCC---HHHHHHH
Confidence            5789999987 8999999998888899 99999998763           22233445432 22  3333   33 22  


Q ss_pred             -HHHHHhcCCCCCEEEEecCC
Q 025101          133 -QIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus       133 -~~i~~~~~~~~d~v~d~~g~  152 (258)
                       +.+.+.. +++|++|++.|.
T Consensus        84 ~~~~~~~~-g~id~lvnnAg~  103 (285)
T 3sc4_A           84 VAKTVEQF-GGIDICVNNASA  103 (285)
T ss_dssp             HHHHHHHH-SCCSEEEECCCC
T ss_pred             HHHHHHHc-CCCCEEEECCCC
Confidence             2233322 279999998874

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.37  E-value=0.00049  Score=52.81  Aligned_cols=88  Identities=11%  Similarity=0.077  Sum_probs=58.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +++++||+|+ +++|.++++.+...|+ +|++++++++             .|-.+   ++..+.+.+.. +++|+++++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~~~---~~~v~~~~~~~-g~id~lv~n   66 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDISD---EKSVYHYFETI-GAFDHLIVT   66 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCTTC---HHHHHHHHHHH-CSEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCCCC---HHHHHHHHHHh-CCCCEEEEC
Confidence            4678999987 8999999998888899 8999987754             23333   33333222222 368999988


Q ss_pred             cCCh--------------------------hhHHHHHHhhhcCCceEEEecccC
Q 025101          150 VGLA--------------------------SLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       150 ~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      .|..                          ...+.+...++++ |+++.++...
T Consensus        67 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~~sS~~  119 (223)
T 3uce_A           67 AGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQG-GSITLTSGML  119 (223)
T ss_dssp             CCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEE-EEEEEECCGG
T ss_pred             CCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCC-eEEEEecchh
Confidence            7732                          0233444555667 8999887543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.37  E-value=0.00089  Score=52.80  Aligned_cols=77  Identities=17%  Similarity=0.154  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCce-E--EcCCCCCCccHH-H---HHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVS-Q---IIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~~-~---~i~~~  138 (258)
                      +|+++||+|+ +++|.++++.+...|+ +|+++++++++.+.+.    +.|... .  .|..+   .+-. +   .+.+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~   85 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITD---DAQVAHLVDETMKA   85 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC---HHHHHHHHHHHHHH
Confidence            6789999986 8999999998888999 8999999987765442    234322 2  23333   3322 2   22232


Q ss_pred             cCCCCCEEEEecCC
Q 025101          139 TDGGADYCFECVGL  152 (258)
Q Consensus       139 ~~~~~d~v~d~~g~  152 (258)
                      . +++|++|++.|.
T Consensus        86 ~-g~id~lv~nAg~   98 (264)
T 3ucx_A           86 Y-GRVDVVINNAFR   98 (264)
T ss_dssp             T-SCCSEEEECCCS
T ss_pred             c-CCCcEEEECCCC
Confidence            2 379999998864

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.37  E-value=0.00083  Score=53.49  Aligned_cols=79  Identities=18%  Similarity=0.223  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceE---EcCCCCCCcc-HHHHHHHhcC
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKS-VSQIIIDMTD  140 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v---i~~~~~~~~~-~~~~i~~~~~  140 (258)
                      .+++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.|....   .|..+   .+ +.+.+.+...
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~   97 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTS---TDEVHAAVAAAVE   97 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC---HHHHHHHHHHHHH
Confidence            35789999986 8999999988888899 899999998776543    22343321   23333   33 2222222211


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|++|++.|.
T Consensus        98 ~~g~id~lv~nAg~  111 (279)
T 3sju_A           98 RFGPIGILVNSAGR  111 (279)
T ss_dssp             HHCSCCEEEECCCC
T ss_pred             HcCCCcEEEECCCC
Confidence              279999998874

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.37  E-value=0.00073  Score=53.17  Aligned_cols=81  Identities=21%  Similarity=0.284  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch-HHHH-Hhc----CCceEEcCCCCCCcc-HHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEIG-KRF----GVTEFVNSKNCGDKS-VSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~-~~~~-~~~----g~~~vi~~~~~~~~~-~~~~i~~~~~--  140 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++ .+.+ +++    |....+-.-+.++.+ +.+.+.+...  
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4688999986 8999999999888999 89999988776 4433 222    433222112222233 2222222211  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|++|++.|.
T Consensus        82 g~iD~lv~~Ag~   93 (260)
T 1x1t_A           82 GRIDILVNNAGI   93 (260)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998873

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.37  E-value=0.00089  Score=52.74  Aligned_cols=79  Identities=25%  Similarity=0.361  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCce-E--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.|... +  .|..+  .+++...+.+...  
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS--EEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            4789999987 8999999999988999 8999999887665432    234322 2  23333  1222222222211  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|++|++.|.
T Consensus        83 g~id~lv~nAg~   94 (262)
T 1zem_A           83 GKIDFLFNNAGY   94 (262)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998873

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.37  E-value=0.0026  Score=51.29  Aligned_cols=76  Identities=24%  Similarity=0.202  Sum_probs=55.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      ..+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|.....+..+    +..        ...|+||-|+.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~----e~~--------~~aDvvi~~vp   73 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACGAAASAR----EFA--------GVVDALVILVV   73 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEESSST----TTT--------TTCSEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccCCHH----HHH--------hcCCEEEEECC
Confidence            3579999999999999988888899 9999999999999888888654122111    111        15788888887


Q ss_pred             ChhhHHHHH
Q 025101          152 LASLVQEAY  160 (258)
Q Consensus       152 ~~~~~~~~~  160 (258)
                      .+..+...+
T Consensus        74 ~~~~~~~v~   82 (303)
T 3g0o_A           74 NAAQVRQVL   82 (303)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            754344443

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.37  E-value=0.00068  Score=53.27  Aligned_cols=77  Identities=21%  Similarity=0.195  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCce-E--EcCCCCCCccHH-H---HHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVS-Q---IIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~~-~---~i~~~  138 (258)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.+... .  .|-.+   .+-. +   .+.+.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~   86 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD---EQHREAVIKAALDQ   86 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC---HHHHHHHHHHHHHH
Confidence            5789999986 8999999988888899 8999999987765432    334332 2  23333   3322 2   22222


Q ss_pred             cCCCCCEEEEecCC
Q 025101          139 TDGGADYCFECVGL  152 (258)
Q Consensus       139 ~~~~~d~v~d~~g~  152 (258)
                      . +++|+++++.|.
T Consensus        87 ~-g~id~lv~nAg~   99 (256)
T 3gaf_A           87 F-GKITVLVNNAGG   99 (256)
T ss_dssp             H-SCCCEEEECCCC
T ss_pred             c-CCCCEEEECCCC
Confidence            2 279999998874

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.36  E-value=0.00062  Score=53.34  Aligned_cols=80  Identities=18%  Similarity=0.135  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----c-C--Cc-eEEcC--CCCCCccHHHHHHHh
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F-G--VT-EFVNS--KNCGDKSVSQIIIDM  138 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~-g--~~-~vi~~--~~~~~~~~~~~i~~~  138 (258)
                      -+|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+    . +  +. ...|.  .+  .+++.+.+.+.
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~~~~   86 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCT--SENCQQLAQRI   86 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCC--HHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCC--HHHHHHHHHHH
Confidence            35789999987 8999999998888999 99999999887654422    1 2  11 12233  22  12222222222


Q ss_pred             c--CCCCCEEEEecCC
Q 025101          139 T--DGGADYCFECVGL  152 (258)
Q Consensus       139 ~--~~~~d~v~d~~g~  152 (258)
                      .  -+++|+++++.|.
T Consensus        87 ~~~~g~id~lv~nAg~  102 (252)
T 3f1l_A           87 AVNYPRLDGVLHNAGL  102 (252)
T ss_dssp             HHHCSCCSEEEECCCC
T ss_pred             HHhCCCCCEEEECCcc
Confidence            1  1279999998874

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.36  E-value=0.00073  Score=52.78  Aligned_cols=78  Identities=15%  Similarity=0.285  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce--E--EcCCCCCCcc-HHHHHHHhc-CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE--F--VNSKNCGDKS-VSQIIIDMT-DGG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~--v--i~~~~~~~~~-~~~~i~~~~-~~~  142 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++...  .  .|..+   .+ +.+.+.+.. -++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~~~   85 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTD---AEAMTAAAAEAEAVAP   85 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC---HHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCC---HHHHHHHHHHHHhhCC
Confidence            5789999987 8999999998888899 899999998776543 3344322  2  23333   32 222222211 137


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|.+.|.
T Consensus        86 id~li~~Ag~   95 (254)
T 2wsb_A           86 VSILVNSAGI   95 (254)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCcc
Confidence            9999998873

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.36  E-value=0.0024  Score=51.62  Aligned_cols=88  Identities=26%  Similarity=0.281  Sum_probs=65.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.++++++ +.+.++|+.. .        ++.+.+.     ..|+|+-++
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~-~--------~l~ell~-----~aDvV~l~~  204 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGKF-V--------DLETLLK-----ESDVVTIHV  204 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCEE-C--------CHHHHHH-----HCSEEEECC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCccc-c--------CHHHHHh-----hCCEEEEec
Confidence            57899999999999999999999999 99999998877 5667777632 1        2322222     489999887


Q ss_pred             CChh----hH-HHHHHhhhcCCceEEEecc
Q 025101          151 GLAS----LV-QEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       151 g~~~----~~-~~~~~~l~~~~G~~v~~g~  175 (258)
                      ....    .+ ...+..++++ +.++.++.
T Consensus       205 p~~~~t~~li~~~~l~~mk~g-a~lin~ar  233 (307)
T 1wwk_A          205 PLVESTYHLINEERLKLMKKT-AILINTSR  233 (307)
T ss_dssp             CCSTTTTTCBCHHHHHHSCTT-CEEEECSC
T ss_pred             CCChHHhhhcCHHHHhcCCCC-eEEEECCC
Confidence            7422    12 3566788888 88888874

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.36  E-value=0.0005  Score=54.24  Aligned_cols=77  Identities=18%  Similarity=0.245  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcC-Cc-eE--EcCCCCCCccHHH----HHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFG-VT-EF--VNSKNCGDKSVSQ----IIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g-~~-~v--i~~~~~~~~~~~~----~i~~  137 (258)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.+ .. ..  .|-.+   .+-.+    .+.+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~   84 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD---RAQCDALAGRAVE   84 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS---HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC---HHHHHHHHHHHHH
Confidence            5789999986 8999999998888999 999999998876543    2233 12 12  23332   33222    2222


Q ss_pred             hcCCCCCEEEEecCC
Q 025101          138 MTDGGADYCFECVGL  152 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~  152 (258)
                      .. +++|+++++.|.
T Consensus        85 ~~-g~id~lvnnAg~   98 (262)
T 3pk0_A           85 EF-GGIDVVCANAGV   98 (262)
T ss_dssp             HH-SCCSEEEECCCC
T ss_pred             Hh-CCCCEEEECCCC
Confidence            22 279999998873

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.36  E-value=0.001  Score=52.30  Aligned_cols=77  Identities=18%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCce-E--EcCCCCCCcc-HHHHHHHh---
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKS-VSQIIIDM---  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~-~~~~i~~~---  138 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.|... .  .|..+   .+ +...+.+.   
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~   79 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQ---ESEVRSLFEQVDRE   79 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTS---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCC---HHHHHHHHHHHHHh
Confidence            4688999986 8999999999888999 8999999887765432    224321 2  23333   33 22223322   


Q ss_pred             cCCCCCEEEEecC
Q 025101          139 TDGGADYCFECVG  151 (258)
Q Consensus       139 ~~~~~d~v~d~~g  151 (258)
                      .-+.+|++|++.|
T Consensus        80 ~~g~id~lvnnAg   92 (260)
T 2qq5_A           80 QQGRLDVLVNNAY   92 (260)
T ss_dssp             HTTCCCEEEECCC
T ss_pred             cCCCceEEEECCc
Confidence            1347999999984

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.36  E-value=0.0015  Score=51.46  Aligned_cols=79  Identities=24%  Similarity=0.354  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-C-HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcC-Cc-eE--EcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-G-SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFG-VT-EF--VNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g-~~-~v--i~~~~~~~~~~~~~i~~~~~  140 (258)
                      +|+++||+|+ | ++|..+++.+...|+ +|+++++++++.+.+.    +.+ .. .+  .|..+  .+++.+.+.+...
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS--TEAVDALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC--HHHHHHHHHHHHH
Confidence            5789999987 7 799999998888899 8999999987765432    222 22 12  23333  1222222222211


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +.+|++|.+.|.
T Consensus        98 ~~g~id~li~~Ag~  111 (266)
T 3o38_A           98 KAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCCcEEEECCCc
Confidence              279999998874

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.35  E-value=0.00095  Score=52.98  Aligned_cols=77  Identities=22%  Similarity=0.234  Sum_probs=50.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch-------HH----HHHhcCCceE---EcCCCCCCccHH-H-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FE----IGKRFGVTEF---VNSKNCGDKSVS-Q-  133 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~-------~~----~~~~~g~~~v---i~~~~~~~~~~~-~-  133 (258)
                      +|+++||+|+ +++|.++++.+...|+ +|++++++.++       .+    .+++.+....   .|..+   ++-. + 
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~   80 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIRE---EDQVRAA   80 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTC---HHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCC---HHHHHHH
Confidence            5789999987 8999999998888999 99999988754       22    1223343221   23333   3322 2 


Q ss_pred             --HHHHhcCCCCCEEEEecCC
Q 025101          134 --IIIDMTDGGADYCFECVGL  152 (258)
Q Consensus       134 --~i~~~~~~~~d~v~d~~g~  152 (258)
                        .+.+.. +++|+++++.|.
T Consensus        81 ~~~~~~~~-g~iD~lvnnAG~  100 (274)
T 3e03_A           81 VAATVDTF-GGIDILVNNASA  100 (274)
T ss_dssp             HHHHHHHH-SCCCEEEECCCC
T ss_pred             HHHHHHHc-CCCCEEEECCCc
Confidence              222222 379999999874

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.35  E-value=0.00063  Score=52.99  Aligned_cols=80  Identities=16%  Similarity=0.189  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcC-C-ceEE--cCCCCCCccHHH---HHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFG-V-TEFV--NSKNCGDKSVSQ---IIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g-~-~~vi--~~~~~~~~~~~~---~i~~~  138 (258)
                      +|+++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+ . ..++  |.+..+.+++.+   .+.+.
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            5789999987 8999999999888999 8999999988765542    233 1 1222  221101122222   22222


Q ss_pred             cCCCCCEEEEecCC
Q 025101          139 TDGGADYCFECVGL  152 (258)
Q Consensus       139 ~~~~~d~v~d~~g~  152 (258)
                      . +++|++|.+.|.
T Consensus        92 ~-g~id~lv~nAg~  104 (247)
T 3i1j_A           92 F-GRLDGLLHNASI  104 (247)
T ss_dssp             H-SCCSEEEECCCC
T ss_pred             C-CCCCEEEECCcc
Confidence            2 279999998874

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.35  E-value=0.00045  Score=53.49  Aligned_cols=97  Identities=13%  Similarity=0.057  Sum_probs=62.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhcCCce-EEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      ++|||+|+ |.+|..+++.+...| + +|++++|++++.+.+...++.. ..|..+   .+   .+.+... ++|+||.+
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d---~~---~~~~~~~-~~D~vv~~   95 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQIIMGDVLN---HA---ALKQAMQ-GQDIVYAN   95 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEEEEECCTTC---HH---HHHHHHT-TCSEEEEE
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcEEEEecCCC---HH---HHHHHhc-CCCEEEEc
Confidence            57999986 999999999998889 7 9999999987654332223221 123332   22   2333322 68999998


Q ss_pred             cCChhh---HHHHHHhhhcC-CceEEEecccC
Q 025101          150 VGLASL---VQEAYACCRKG-WGKTIVLGVDQ  177 (258)
Q Consensus       150 ~g~~~~---~~~~~~~l~~~-~G~~v~~g~~~  177 (258)
                      .|....   .+.+++.++.. .++++.++...
T Consensus        96 a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A           96 LTGEDLDIQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             CCSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             CCCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence            886441   33455555443 26888887543

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.34  E-value=0.00097  Score=52.82  Aligned_cols=78  Identities=19%  Similarity=0.225  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCcc-HHHHHHHhc--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKS-VSQIIIDMT--  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~-~~~~i~~~~--  139 (258)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.|... +  .|..+   .+ +.+.+.+..  
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~---~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN---REDIYSSAKKVKAE  105 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCC---HHHHHHHHHHHHHH
Confidence            5789999987 8999999999888899 899999988766543    2234321 2  23333   33 222222221  


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                      -+++|++|.+.|.
T Consensus       106 ~g~iD~li~~Ag~  118 (272)
T 1yb1_A          106 IGDVSILVNNAGV  118 (272)
T ss_dssp             TCCCSEEEECCCC
T ss_pred             CCCCcEEEECCCc
Confidence            1379999998873

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.34  E-value=0.00097  Score=52.59  Aligned_cols=79  Identities=15%  Similarity=0.189  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHH-cCCCeEEEEcCCcchHHHH----HhcCCc-eE--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~-~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++||+|+ |++|..+++.+.. .|+ +|++++++.++.+.+    ++.+.. .+  .|..+  .+++.+.+.+... 
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD--LQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCC--HHHHHHHHHHHHHh
Confidence            5789999986 9999999888877 899 999999987765433    223422 22  23332  1222222222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|.+.|.
T Consensus        80 ~g~id~li~~Ag~   92 (276)
T 1wma_A           80 YGGLDVLVNNAGI   92 (276)
T ss_dssp             HSSEEEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence             269999998873

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.34  E-value=0.00095  Score=53.29  Aligned_cols=79  Identities=16%  Similarity=0.191  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc---CCce-E--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---GVTE-F--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~---g~~~-v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+. ++   |... .  .|..+  .+++.+.+.+...  
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSD--ELQMRNAVRDLVLKF  103 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5789999986 8999999998888999 9999999987765543 22   3222 2  23333  1222222222211  


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|+++++.|.
T Consensus       104 g~iD~lVnnAg~  115 (283)
T 3v8b_A          104 GHLDIVVANAGI  115 (283)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998874

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.34  E-value=0.0013  Score=53.26  Aligned_cols=75  Identities=16%  Similarity=0.233  Sum_probs=51.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC---cchHHHH-Hhc----CCc-eEEcCCCCCCccHHHHHHHhcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---SEKFEIG-KRF----GVT-EFVNSKNCGDKSVSQIIIDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~---~~~~~~~-~~~----g~~-~vi~~~~~~~~~~~~~i~~~~~~  141 (258)
                      .|+++||+|+|++|.+++..+...|+++|+++.|+   .++.+.+ +++    +.. .+++..+  .+++.+.+.     
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~--~~~l~~~l~-----  225 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED--HEQLRKEIA-----  225 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC--HHHHHHHHH-----
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch--HHHHHhhhc-----
Confidence            68899999999999999999999999789999998   5554433 222    321 3444432  011222222     


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      .+|+||+|++.
T Consensus       226 ~aDiIINaTp~  236 (315)
T 3tnl_A          226 ESVIFTNATGV  236 (315)
T ss_dssp             TCSEEEECSST
T ss_pred             CCCEEEECccC
Confidence            69999999874

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.34  E-value=0.00074  Score=52.60  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCce-E--EcCCCCCCccHHHHHHHhc--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~~~~i~~~~--~  140 (258)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+... .  .|..+  .+++.+.+.+..  .
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISD--IESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHc
Confidence            4789999987 8999999988888899 9999999987765442    334332 2  23333  122222333322  2


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|++|.+.|.
T Consensus        81 ~~id~li~~Ag~   92 (247)
T 3lyl_A           81 LAIDILVNNAGI   92 (247)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998874

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.34  E-value=0.00052  Score=54.11  Aligned_cols=77  Identities=13%  Similarity=0.089  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHhcCCceE-EcCCCCCCcc-HHH---HHHHhcCCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF-EIGKRFGVTEF-VNSKNCGDKS-VSQ---IIIDMTDGGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~-~~~~~~g~~~v-i~~~~~~~~~-~~~---~i~~~~~~~~  143 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++. +.+++.++..+ .|..+   .+ +.+   .+.+.. +++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~-g~i  100 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVALYGDFSC---ETGIMAFIDLLKTQT-SSL  100 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEEEECCTTS---HHHHHHHHHHHHHHC-SCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeEEECCCCC---HHHHHHHHHHHHHhc-CCC
Confidence            4788999986 8999999998888899 899999988764 34555664322 23333   33 222   222222 379


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|++.|.
T Consensus       101 D~lv~nAg~  109 (260)
T 3gem_A          101 RAVVHNASE  109 (260)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999998873

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.33  E-value=0.00095  Score=55.27  Aligned_cols=90  Identities=19%  Similarity=0.268  Sum_probs=65.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCe-EEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATR-IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~-v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      .|.+|.|+|.|.+|..+++.++.+|. + |++.+++..+.+.+.++|+..+        .++.+.+.     ..|+|+.+
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~-----~aDvV~l~  228 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQALPKDAEEKVGARRV--------ENIEELVA-----QADIVTVN  228 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCCCHHHHHHTTEEEC--------SSHHHHHH-----TCSEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCccchhHHHhcCcEec--------CCHHHHHh-----cCCEEEEC
Confidence            57899999999999999999999999 7 9999988877777777775321        12333222     58899888


Q ss_pred             cCCh----hhH-HHHHHhhhcCCceEEEecc
Q 025101          150 VGLA----SLV-QEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       150 ~g~~----~~~-~~~~~~l~~~~G~~v~~g~  175 (258)
                      +...    ..+ ...+..++++ +.++.++.
T Consensus       229 ~P~t~~t~~li~~~~l~~mk~g-a~lIn~ar  258 (364)
T 2j6i_A          229 APLHAGTKGLINKELLSKFKKG-AWLVNTAR  258 (364)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             CCCChHHHHHhCHHHHhhCCCC-CEEEECCC
Confidence            7653    112 3456777887 77777764

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.33  E-value=0.0011  Score=52.83  Aligned_cols=34  Identities=29%  Similarity=0.242  Sum_probs=30.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|++++++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            5789999986 8999999999999999 89999986

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.33  E-value=0.0023  Score=51.84  Aligned_cols=89  Identities=19%  Similarity=0.263  Sum_probs=63.2

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCcc-HHHHHHHhcCCCCCEEEEe
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKS-VSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~-~~~~i~~~~~~~~d~v~d~  149 (258)
                      .+|.|+|.|.+|...++.++..|.. +|++.++++++.+.+++.|.. ...+..    ++ ..        .+.|+||-|
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~----~~~~~--------~~aDvVila  101 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI----AKVED--------FSPDFVMLS  101 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCT----TGGGG--------GCCSEEEEC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCH----HHHhh--------ccCCEEEEe
Confidence            6899999999999999999888864 799999999999999888863 222211    11 11        168999999


Q ss_pred             cCChh---hHHHHHHhhhcCCceEEEec
Q 025101          150 VGLAS---LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       150 ~g~~~---~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +....   .+......++++ ..++.++
T Consensus       102 vp~~~~~~vl~~l~~~l~~~-~iv~d~~  128 (314)
T 3ggo_A          102 SPVRTFREIAKKLSYILSED-ATVTDQG  128 (314)
T ss_dssp             SCGGGHHHHHHHHHHHSCTT-CEEEECC
T ss_pred             CCHHHHHHHHHHHhhccCCC-cEEEECC
Confidence            88654   233444455665 6666555

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.33  E-value=0.00094  Score=54.93  Aligned_cols=90  Identities=18%  Similarity=0.206  Sum_probs=66.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.++++...+.+++.|+..+        .++.+.+.     ..|+|+-++
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~l~ell~-----~aDvV~l~~  228 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAKFV--------EDLNEMLP-----KCDVIVINM  228 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCEEC--------SCHHHHGG-----GCSEEEECS
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCeEc--------CCHHHHHh-----cCCEEEECC
Confidence            58899999999999999999999999 89999998877777777876422        12332222     488998877


Q ss_pred             CCh-h----hHHHHHHhhhcCCceEEEecc
Q 025101          151 GLA-S----LVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       151 g~~-~----~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      +.. .    .-...+..++++ ..++.++.
T Consensus       229 Plt~~t~~li~~~~l~~mk~g-ailIN~aR  257 (351)
T 3jtm_A          229 PLTEKTRGMFNKELIGKLKKG-VLIVNNAR  257 (351)
T ss_dssp             CCCTTTTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred             CCCHHHHHhhcHHHHhcCCCC-CEEEECcC
Confidence            632 1    124667778887 88777763

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.33  E-value=0.001  Score=52.37  Aligned_cols=79  Identities=22%  Similarity=0.217  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCc-eE--EcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++... ..  .|..+  .+++.+.+.+...  +++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d--~~~v~~~~~~~~~~~g~i   87 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTK--RASVDAAMQKAIDALGGF   87 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTC--HHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCC--HHHHHHHHHHHHHHcCCC
Confidence            4789999986 8999999998888999 9999999987766543 34321 12  23333  1222222222211  269


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|++.|.
T Consensus        88 D~lv~~Ag~   96 (263)
T 3ak4_A           88 DLLCANAGV   96 (263)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999998873

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.32  E-value=0.00084  Score=50.28  Aligned_cols=100  Identities=20%  Similarity=0.228  Sum_probs=68.2

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCC-c--eEEcCCCCCCccHHHHHHHh
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGV-T--EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~-~--~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ..++++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|. .  .++..+-   .++    ...
T Consensus        18 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~----~~~   89 (197)
T 3eey_A           18 MFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH---QNM----DKY   89 (197)
T ss_dssp             HHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG---GGG----GGT
T ss_pred             hcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH---HHH----hhh
Confidence            4567899999999875 888888888764 2389999999988877755    343 2  2332211   111    112


Q ss_pred             cCCCCCEEEEecCC---------------hhhHHHHHHhhhcCCceEEEecc
Q 025101          139 TDGGADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       139 ~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      .++.+|+|+-..+.               ...+..+.+.++++ |+++....
T Consensus        90 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~  140 (197)
T 3eey_A           90 IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG-GIITVVIY  140 (197)
T ss_dssp             CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC-CEEEEEEc
Confidence            22479999965533               23588999999999 99987753

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.32  E-value=0.0012  Score=53.33  Aligned_cols=75  Identities=20%  Similarity=0.220  Sum_probs=50.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC---cchHHHH-Hhc----CCc-eEEcCCCCCCccH-HHHHHHhcC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---SEKFEIG-KRF----GVT-EFVNSKNCGDKSV-SQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~---~~~~~~~-~~~----g~~-~vi~~~~~~~~~~-~~~i~~~~~  140 (258)
                      .++++||+|+|++|.+++..+...|+++|+++.|+   .++.+.+ +++    +.. .+++..+   .+. .+.+.    
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~---l~~~~~~l~----  219 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLAD---QHAFTEALA----  219 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTC---HHHHHHHHH----
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHh---hhhhHhhcc----
Confidence            57899999999999999999999999889999999   5444432 222    222 2333322   111 22222    


Q ss_pred             CCCCEEEEecCCh
Q 025101          141 GGADYCFECVGLA  153 (258)
Q Consensus       141 ~~~d~v~d~~g~~  153 (258)
                       .+|+||+|++..
T Consensus       220 -~~DiIINaTp~G  231 (312)
T 3t4e_A          220 -SADILTNGTKVG  231 (312)
T ss_dssp             -HCSEEEECSSTT
T ss_pred             -CceEEEECCcCC
Confidence             589999998753

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.32  E-value=0.00075  Score=53.54  Aligned_cols=81  Identities=20%  Similarity=0.243  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceEEcCCCCCCccH-HHHHHHhc--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSV-SQIIIDMT--DGG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~-~~~i~~~~--~~~  142 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.|....+-.-+.++.+- .+.+.+..  .++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            5789999986 8999999999888999 999999988776543    2334332222222222332 22222221  237


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|+++++.|.
T Consensus       104 iD~lv~nAg~  113 (271)
T 4ibo_A          104 VDILVNNAGI  113 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999998874

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.32  E-value=0.0013  Score=54.46  Aligned_cols=130  Identities=21%  Similarity=0.253  Sum_probs=83.0

Q ss_pred             CEEEEEccCHHHHHHHHHHHHc-CCCeEEE-EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           73 STVVIFGLGSIGLAVAEGARLC-GATRIIG-VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~-~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      -+|.|+|+|.+|...+..++.. ++ ++++ .++++++.+.++++|+. ++       .++.+.+.+   ..+|+|+.|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~a~~~g~~-~~-------~~~~~ll~~---~~~D~V~i~t   73 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNL-EVHGVFDILAEKREAAAQKGLK-IY-------ESYEAVLAD---EKVDAVLIAT   73 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTE-EEEEEECSSHHHHHHHHTTTCC-BC-------SCHHHHHHC---TTCCEEEECS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHhcCCc-ee-------CCHHHHhcC---CCCCEEEEcC
Confidence            4789999999998888777765 66 6665 47777787777777763 22       234444432   2799999999


Q ss_pred             CChhhHHHHHHhhhcCCceEEEecccCCCCceeechHH------H-HhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC
Q 025101          151 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------V-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       151 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      ......+.+..++..  |+-+++...     +..+...      . -.+++.+.-..  +..+...++.+.+++.+|.+-
T Consensus        74 p~~~h~~~~~~al~a--GkhVl~EKP-----~a~~~~ea~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~k~~i~~g~iG  144 (359)
T 3e18_A           74 PNDSHKELAISALEA--GKHVVCEKP-----VTMTSEDLLAIMDVAKRVNKHFMVHQ--NRRWDEDFLIIKEMFEQKTIG  144 (359)
T ss_dssp             CGGGHHHHHHHHHHT--TCEEEEESS-----CCSSHHHHHHHHHHHHHHTCCEEEEC--GGGGCHHHHHHHHHHHHTTTS
T ss_pred             CcHHHHHHHHHHHHC--CCCEEeeCC-----CcCCHHHHHHHHHHHHHhCCeEEEEe--eeccCHHHHHHHHHHHcCCCC
Confidence            988878888888886  555556532     1222111      1 22344433221  223345678888888888653

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.32  E-value=0.00071  Score=52.59  Aligned_cols=76  Identities=17%  Similarity=0.173  Sum_probs=52.4

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHhc-CCc-eE--EcCCCCCCcc-HH---HHHHHhcC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKRF-GVT-EF--VNSKNCGDKS-VS---QIIIDMTD  140 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~~~-g~~-~v--i~~~~~~~~~-~~---~~i~~~~~  140 (258)
                      ++++||+|+ |++|..+++.+...|  + +|+++++++++.+.++++ +.. .+  .|..+   .+ +.   +.+.+..+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~~g   78 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTC---DKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTC---HHHHHHHHHHHHHHHG
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCC---HHHHHHHHHHHHHhcC
Confidence            578999986 899999999888889  7 999999998887777665 322 12  23332   22 22   22333333


Q ss_pred             C-CCCEEEEecC
Q 025101          141 G-GADYCFECVG  151 (258)
Q Consensus       141 ~-~~d~v~d~~g  151 (258)
                      . ++|++|.+.|
T Consensus        79 ~~~id~li~~Ag   90 (250)
T 1yo6_A           79 SDGLSLLINNAG   90 (250)
T ss_dssp             GGCCCEEEECCC
T ss_pred             CCCCcEEEECCc
Confidence            2 6999999886

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.32  E-value=0.0014  Score=51.28  Aligned_cols=101  Identities=16%  Similarity=0.251  Sum_probs=66.9

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc--
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT--  139 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~--  139 (258)
                      ...++++||-+|+|. |..++.+++.+  +. +|++++.+++..+.+++    .|...-+....   .+..+.+....  
T Consensus        76 ~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~---gda~~~l~~l~~~  150 (247)
T 1sui_A           76 KLINAKNTMEIGVYT-GYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFRE---GPALPVLDEMIKD  150 (247)
T ss_dssp             HHTTCCEEEEECCGG-GHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHS
T ss_pred             HhhCcCEEEEeCCCc-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE---CCHHHHHHHHHhc
Confidence            345678999999874 88888899876  45 99999999988877754    45421111111   23444333331  


Q ss_pred             ---CCCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          140 ---DGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ---~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                         .+.||+||-....   ...+..+.+.|+|+ |.++.-.
T Consensus       151 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d~  190 (247)
T 1sui_A          151 EKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN  190 (247)
T ss_dssp             GGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEEC
T ss_pred             cCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCC-eEEEEec
Confidence               3479999843222   34577889999999 9987543

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.32  E-value=0.0023  Score=50.78  Aligned_cols=78  Identities=28%  Similarity=0.303  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-eEE--cCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  140 (258)
                      .++++||+|+ |++|..++..+...|+ +|+++++++++.+.+.    +.+.. .++  |..+  .+++.+.+.+...  
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISD--PKSVEETISQQEKDF  109 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCC--HHHHHHHHHHHHHHh
Confidence            4789999986 8999999888888899 8999998877654432    23432 122  3332  1222222322211  


Q ss_pred             CCCCEEEEecC
Q 025101          141 GGADYCFECVG  151 (258)
Q Consensus       141 ~~~d~v~d~~g  151 (258)
                      +.+|++|.+.|
T Consensus       110 g~id~li~~Ag  120 (279)
T 3ctm_A          110 GTIDVFVANAG  120 (279)
T ss_dssp             SCCSEEEECGG
T ss_pred             CCCCEEEECCc
Confidence            26999999876

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.32  E-value=0.0023  Score=50.00  Aligned_cols=73  Identities=22%  Similarity=0.144  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEE-cCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      -+|+++||+|+ |++|.++++.+...|+ +|++++++++.   +++++...++ |. .   ++....+.+..  ++|++|
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~---~~~~~~~~~~~D~-~---~~~~~~~~~~~--~iD~lv   86 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVVCDL-R---KDLDLLFEKVK--EVDILV   86 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEECCT-T---TCHHHHHHHSC--CCSEEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHH---HHhhCCeEEEeeH-H---HHHHHHHHHhc--CCCEEE
Confidence            46889999987 8999999998888999 89999988743   3444522222 22 1   34444343332  699999


Q ss_pred             EecCC
Q 025101          148 ECVGL  152 (258)
Q Consensus       148 d~~g~  152 (258)
                      ++.|.
T Consensus        87 ~~Ag~   91 (249)
T 1o5i_A           87 LNAGG   91 (249)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            98873

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.31  E-value=0.0013  Score=52.16  Aligned_cols=94  Identities=11%  Similarity=-0.003  Sum_probs=60.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      ++++++|+|+|++|.++++.+...|+ +|+++.|+.++.+. +++++...-++..+  .++    +.+   +++|++++|
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~~~~~--~~~----~~~---~~~DivVn~  187 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALS--MDE----LEG---HEFDLIINA  187 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECC--SGG----GTT---CCCSEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCeeEec--HHH----hcc---CCCCEEEEC
Confidence            57899999999999999999999997 99999999888654 44554310011111  011    111   479999999


Q ss_pred             cCChhhHH---HHHHhhhcCCceEEEecc
Q 025101          150 VGLASLVQ---EAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       150 ~g~~~~~~---~~~~~l~~~~G~~v~~g~  175 (258)
                      ++....-.   .....+.++ ..++.+..
T Consensus       188 t~~~~~~~~~~i~~~~l~~~-~~v~D~~y  215 (271)
T 1nyt_A          188 TSSGISGDIPAIPSSLIHPG-IYCYDMFY  215 (271)
T ss_dssp             CSCGGGTCCCCCCGGGCCTT-CEEEESCC
T ss_pred             CCCCCCCCCCCCCHHHcCCC-CEEEEecc
Confidence            99765200   112334555 56666653

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.31  E-value=0.00098  Score=52.45  Aligned_cols=79  Identities=13%  Similarity=0.216  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc-eE--EcCCCCCCccHHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.. .+  .|..+  .+++.+.+.+...  +++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   82 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ--PAQWKAAVDTAVTAFGGL   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4789999987 8999999998888899 899999998776554 334321 12  23333  1222222222211  269


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|++.|.
T Consensus        83 D~lv~~Ag~   91 (260)
T 1nff_A           83 HVLVNNAGI   91 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998873

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.31  E-value=0.0014  Score=50.75  Aligned_cols=73  Identities=18%  Similarity=0.264  Sum_probs=47.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc----HHHHHHHhcC-CCCCE
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS----VSQIIIDMTD-GGADY  145 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~----~~~~i~~~~~-~~~d~  145 (258)
                      ++++||+|+ |++|.++++.+...|+ +|+++++++++.+     +....+ .-+.++.+    +.+.+.+..+ +++|+
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILV-DGNKNWTEQEQSILEQTASSLQGSQVDG   75 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEEC-CTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCccccc-----cccEEE-eCCCCCHHHHHHHHHHHHHHhCCCCCCE
Confidence            578999987 8999999999988999 9999999876532     111111 11111122    2223333332 47999


Q ss_pred             EEEecC
Q 025101          146 CFECVG  151 (258)
Q Consensus       146 v~d~~g  151 (258)
                      +|++.|
T Consensus        76 lv~~Ag   81 (236)
T 1ooe_A           76 VFCVAG   81 (236)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999887

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.31  E-value=0.0017  Score=50.39  Aligned_cols=75  Identities=15%  Similarity=0.197  Sum_probs=48.2

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc----HHHHHHHhcC-CCC
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS----VSQIIIDMTD-GGA  143 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~----~~~~i~~~~~-~~~  143 (258)
                      .+++++||+|+ |++|..+++.+...|+ +|+++++++++.+     +....+ .-+..+.+    +.+.+.+..+ +++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~-~~D~~~~~~v~~~~~~~~~~~~~g~i   77 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIV-KMTDSFTEQADQVTAEVGKLLGDQKV   77 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEEC-CCCSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc-----CCcEEE-EcCCCCHHHHHHHHHHHHHHhCCCCC
Confidence            35789999987 8999999999988899 8999998876532     111111 11111122    2223333333 479


Q ss_pred             CEEEEecC
Q 025101          144 DYCFECVG  151 (258)
Q Consensus       144 d~v~d~~g  151 (258)
                      |++|++.|
T Consensus        78 D~lv~~Ag   85 (241)
T 1dhr_A           78 DAILCVAG   85 (241)
T ss_dssp             EEEEECCC
T ss_pred             CEEEEccc
Confidence            99999887

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.30  E-value=0.001  Score=52.09  Aligned_cols=79  Identities=23%  Similarity=0.297  Sum_probs=49.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHH---HHhcCCceEEcCCCCCCcc-HHHHHHHhcC--CCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI---GKRFGVTEFVNSKNCGDKS-VSQIIIDMTD--GGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~---~~~~g~~~vi~~~~~~~~~-~~~~i~~~~~--~~~  143 (258)
                      +++++||+|+ |++|..+++.+...|+ +|++++++++ .+.   +++.|....+-.-+.++.+ +.+.+.+...  +++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP-APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGV   80 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC-HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch-HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999987 8999999998888999 8999998876 222   2333433221111211132 2222222211  279


Q ss_pred             CEEEEecC
Q 025101          144 DYCFECVG  151 (258)
Q Consensus       144 d~v~d~~g  151 (258)
                      |++|++.|
T Consensus        81 d~lv~~Ag   88 (255)
T 2q2v_A           81 DILVNNAG   88 (255)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.30  E-value=0.00015  Score=59.55  Aligned_cols=103  Identities=18%  Similarity=0.211  Sum_probs=67.9

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhc----C-----------Cc--eEEcCCC
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRF----G-----------VT--EFVNSKN  125 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~----g-----------~~--~vi~~~~  125 (258)
                      .....+.+|++||-+|+|. |..++.+++..|. .+|++++.+++..+.+++.    |           ..  .++..+-
T Consensus        98 l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~  176 (336)
T 2b25_A           98 LSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI  176 (336)
T ss_dssp             HHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred             HHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh
Confidence            3456788999999999986 8888888887663 3899999999888777652    1           01  2222211


Q ss_pred             CCCccHHHHHHHhcCCCCCEEEEecCCh-hhHHHHHHhhhcCCceEEEec
Q 025101          126 CGDKSVSQIIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       126 ~~~~~~~~~i~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g  174 (258)
                         .+..   .....+.+|+|+-....+ ..+..+.+.|+|+ |+++.+.
T Consensus       177 ---~~~~---~~~~~~~fD~V~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  219 (336)
T 2b25_A          177 ---SGAT---EDIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYV  219 (336)
T ss_dssp             ---TCCC----------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEE
T ss_pred             ---HHcc---cccCCCCeeEEEECCCCHHHHHHHHHHhcCCC-cEEEEEe
Confidence               1111   111223699998655443 3488999999999 9998665

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.30  E-value=0.00042  Score=53.65  Aligned_cols=101  Identities=18%  Similarity=0.187  Sum_probs=68.2

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcC-
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~-  140 (258)
                      ...++.+||-+|+| .|..++.+++.+  +. +|++++.+++..+.+++    .|...-+....   .+..+.+.++.. 
T Consensus        69 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---~d~~~~l~~l~~~  143 (232)
T 3cbg_A           69 SLTGAKQVLEIGVF-RGYSALAMALQLPPDG-QIIACDQDPNATAIAKKYWQKAGVAEKISLRL---GPALATLEQLTQG  143 (232)
T ss_dssp             HHHTCCEEEEECCT-TSHHHHHHHTTSCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHHHHHHTS
T ss_pred             HhcCCCEEEEecCC-CCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHhc
Confidence            34567899999998 588899999876  45 89999999988877754    35421111112   344444444421 


Q ss_pred             ---CCCCEEE-EecCC--hhhHHHHHHhhhcCCceEEEec
Q 025101          141 ---GGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ---~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                         +.||+|| |....  ...+..+.+.|+|+ |.++.-.
T Consensus       144 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  182 (232)
T 3cbg_A          144 KPLPEFDLIFIDADKRNYPRYYEIGLNLLRRG-GLMVIDN  182 (232)
T ss_dssp             SSCCCEEEEEECSCGGGHHHHHHHHHHTEEEE-EEEEEEC
T ss_pred             CCCCCcCEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence               4799998 43322  33478889999999 9988653

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.30  E-value=0.0021  Score=51.30  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=53.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCCh
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      +|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+.. .       .+..+.+.     ..|+||-|+..+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~-------~~~~~~~~-----~advvi~~v~~~   68 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGARQ-A-------SSPAEVCA-----ACDITIAMLADP   68 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTCEE-C-------SCHHHHHH-----HCSEEEECCSSH
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCee-c-------CCHHHHHH-----cCCEEEEEcCCH
Confidence            68899999999998888888898 8999999999998888777532 1       22333332     368888888776


Q ss_pred             hhHHHHH
Q 025101          154 SLVQEAY  160 (258)
Q Consensus       154 ~~~~~~~  160 (258)
                      ..+...+
T Consensus        69 ~~~~~v~   75 (287)
T 3pdu_A           69 AAAREVC   75 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4344444

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.29  E-value=0.0012  Score=53.03  Aligned_cols=34  Identities=32%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .|+++||+|+ +++|.++++.+...|+ +|++++++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~   61 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVC   61 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            5789999987 8999999998888999 89998876

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.29  E-value=0.00085  Score=52.18  Aligned_cols=79  Identities=23%  Similarity=0.326  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----cCCc-eEE--cCCCCCCccHHHHHHHhc--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVT-EFV--NSKNCGDKSVSQIIIDMT--  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-----~g~~-~vi--~~~~~~~~~~~~~i~~~~--  139 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+     .+.. .++  |..+  .+++.+.+.+..  
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS--EESINKAFEEIYNL   82 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCC--HHHHHHHHHHHHHh
Confidence            4688999987 8999999998888899 99999998876654322     3432 122  3333  122222222221  


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                      -+++|++|.+.|.
T Consensus        83 ~~~~d~vi~~Ag~   95 (248)
T 2pnf_A           83 VDGIDILVNNAGI   95 (248)
T ss_dssp             SSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1379999998873

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.29  E-value=0.00086  Score=51.73  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=51.2

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceE--EcCCCCCCccHHHHHHHhcC--CCCCE
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF--VNSKNCGDKSVSQIIIDMTD--GGADY  145 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v--i~~~~~~~~~~~~~i~~~~~--~~~d~  145 (258)
                      ++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. +++...+  .|..+  .+++.+.+.+...  +++|+
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   81 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVRE--EGDWARAVAAMEEAFGELSA   81 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            578999986 8999999998888999 8999999887766543 3431122  23333  1222222222211  27999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      +|++.|.
T Consensus        82 li~~Ag~   88 (234)
T 2ehd_A           82 LVNNAGV   88 (234)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9998873

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.29  E-value=0.0013  Score=52.19  Aligned_cols=79  Identities=16%  Similarity=0.196  Sum_probs=50.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC--ceEEcCCCCCCccHH-H---HHHHhcCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--TEFVNSKNCGDKSVS-Q---IIIDMTDGG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~--~~vi~~~~~~~~~~~-~---~i~~~~~~~  142 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +++..  ...+-.-+.++++-. +   .+.+.. ++
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~  105 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELS-AR  105 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHC-SC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhc-CC
Confidence            4789999987 8999999999888999 899999988776543 23321  211111121113222 2   222222 37


Q ss_pred             CCEEEEecC
Q 025101          143 ADYCFECVG  151 (258)
Q Consensus       143 ~d~v~d~~g  151 (258)
                      +|++|++.|
T Consensus       106 iD~lvnnAg  114 (276)
T 2b4q_A          106 LDILVNNAG  114 (276)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.28  E-value=0.0012  Score=51.76  Aligned_cols=78  Identities=18%  Similarity=0.132  Sum_probs=50.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-eE--EcCCCCCCccHHHHHHHhc--CC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSVSQIIIDMT--DG  141 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~~i~~~~--~~  141 (258)
                      ++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.|.. .+  .|..+  .+++.+.+.+..  -+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD--RDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHhC
Confidence            578999986 8999999999888999 8999999887655432    23432 12  23333  122222222221  13


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|++|++.|.
T Consensus        79 ~id~lv~nAg~   89 (256)
T 1geg_A           79 GFDVIVNNAGV   89 (256)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999998873

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.28  E-value=0.0013  Score=51.58  Aligned_cols=78  Identities=23%  Similarity=0.323  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-eE--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+.. .+  .|..+  .+++.+.+.+...  
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTN--TESVQNAVRSVHEQE   88 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHc
Confidence            4789999986 8999999998888899 999999988765432    223432 12  23333  1222222322211  


Q ss_pred             CCCCEEEEecC
Q 025101          141 GGADYCFECVG  151 (258)
Q Consensus       141 ~~~d~v~d~~g  151 (258)
                      +++|++|.+.|
T Consensus        89 ~~id~vi~~Ag   99 (260)
T 3awd_A           89 GRVDILVACAG   99 (260)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            27999999886

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.28  E-value=0.00092  Score=53.00  Aligned_cols=78  Identities=15%  Similarity=0.035  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHHHH-hc----CCce-E--EcCCCCCCc----cHHH-HH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGK-RF----GVTE-F--VNSKNCGDK----SVSQ-II  135 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~~~-~~----g~~~-v--i~~~~~~~~----~~~~-~i  135 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+. ++    +... +  .|..+   .    +..+ .+
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~~~~~~~~~~~~   85 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL---SSSLLDCCEDII   85 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS---STTHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCC---ccccHHHHHHHH
Confidence            4688999986 8999999998888999 9999998 776655432 22    4322 2  23333   3    2222 22


Q ss_pred             HHhcC--CCCCEEEEecCC
Q 025101          136 IDMTD--GGADYCFECVGL  152 (258)
Q Consensus       136 ~~~~~--~~~d~v~d~~g~  152 (258)
                      .+...  +++|++|++.|.
T Consensus        86 ~~~~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           86 DCSFRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence            22211  279999998873

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.28  E-value=0.0012  Score=52.35  Aligned_cols=34  Identities=35%  Similarity=0.351  Sum_probs=30.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecc
Confidence            5789999986 8999999998888999 89999876

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.27  E-value=0.0012  Score=53.02  Aligned_cols=78  Identities=12%  Similarity=0.168  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----CCce-E--EcCCCCCCccHHHHHHHhc--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVTE-F--VNSKNCGDKSVSQIIIDMT--  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g~~~-v--i~~~~~~~~~~~~~i~~~~--  139 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++    +... +  .|..+  .+++.+.+.+..  
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD--PDMVQNTVSELIKV  101 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 8999999998888999 8999999987665432 22    4322 2  23332  122222222221  


Q ss_pred             CCCCCEEEEecC
Q 025101          140 DGGADYCFECVG  151 (258)
Q Consensus       140 ~~~~d~v~d~~g  151 (258)
                      -+.+|++|.+.|
T Consensus       102 ~g~id~li~~Ag  113 (302)
T 1w6u_A          102 AGHPNIVINNAA  113 (302)
T ss_dssp             TCSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            137999999887

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.27  E-value=0.0012  Score=51.95  Aligned_cols=78  Identities=21%  Similarity=0.173  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCcc-HH---HHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKS-VS---QIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~-~~---~~i~~~  138 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+... +  .|..+   .+ +.   +.+.+.
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL---RPEREKLMQTVSSM   88 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCC---HHHHHHHHHHHHHH
Confidence            4688999986 8999999998888999 899999988765543    2234322 2  23322   22 22   222222


Q ss_pred             cCCCCCEEEEecCC
Q 025101          139 TDGGADYCFECVGL  152 (258)
Q Consensus       139 ~~~~~d~v~d~~g~  152 (258)
                      .++++|++|.+.|.
T Consensus        89 ~~~~id~li~~Ag~  102 (266)
T 1xq1_A           89 FGGKLDILINNLGA  102 (266)
T ss_dssp             HTTCCSEEEEECCC
T ss_pred             hCCCCcEEEECCCC
Confidence            32479999998874

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.27  E-value=0.00099  Score=53.61  Aligned_cols=78  Identities=14%  Similarity=0.116  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---hcCC-c-eE--EcCCCCCCc-cHHH----HH
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K---RFGV-T-EF--VNSKNCGDK-SVSQ----II  135 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~---~~g~-~-~v--i~~~~~~~~-~~~~----~i  135 (258)
                      .+++++||+|+ |++|.++++.+...|+ +|++++|++++.+.+ +   +.+. . .+  .|..+   . +..+    .+
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~---~~~~v~~~~~~~   85 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTD---PIATMSSLADFI   85 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTS---CHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCC---cHHHHHHHHHHH
Confidence            35789999987 8999999988888899 999999998775443 2   2222 1 12  23333   3 3332    23


Q ss_pred             HHhcCCCCCEEEEecCC
Q 025101          136 IDMTDGGADYCFECVGL  152 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g~  152 (258)
                      .+.. +++|++|++.|.
T Consensus        86 ~~~~-g~iD~lv~nAg~  101 (311)
T 3o26_A           86 KTHF-GKLDILVNNAGV  101 (311)
T ss_dssp             HHHH-SSCCEEEECCCC
T ss_pred             HHhC-CCCCEEEECCcc
Confidence            3222 279999999884

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.26  E-value=0.00025  Score=56.17  Aligned_cols=73  Identities=21%  Similarity=0.264  Sum_probs=47.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHH----HHHHHhcCCCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVS----QIIIDMTDGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~----~~i~~~~~~~~d~  145 (258)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++.++.+.....    ..|..+   .+..    +.+.+.. +++|+
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~----~~Dv~~---~~~~~~~~~~~~~~~-g~iD~   97 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIAADLHL----PGDLRE---AAYADGLPGAVAAGL-GRLDI   97 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSCCSEEC----CCCTTS---HHHHHHHHHHHHHHH-SCCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHhhhcc----CcCCCC---HHHHHHHHHHHHHhc-CCCCE
Confidence            5789999987 8999999998888999 999999876554221111    112222   2222    2222222 27999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      +|++.|.
T Consensus        98 lvnnAg~  104 (266)
T 3uxy_A           98 VVNNAGV  104 (266)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9998874

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.26  E-value=0.00071  Score=51.95  Aligned_cols=100  Identities=15%  Similarity=0.099  Sum_probs=68.5

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcC-----CCeEEEEcCCcchHHHHHh----cC-----Cc--eEEcCCCCCCcc-
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCG-----ATRIIGVDVISEKFEIGKR----FG-----VT--EFVNSKNCGDKS-  130 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g-----~~~v~~~~~~~~~~~~~~~----~g-----~~--~vi~~~~~~~~~-  130 (258)
                      .++++++||.+|+|. |..+..+++..+     ..+|++++.+++..+.+++    .+     ..  .++..+-   .+ 
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~  152 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI---YQV  152 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG---GGC
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh---Hhc
Confidence            578899999999986 888889998775     1289999999988877755    23     11  2222211   11 


Q ss_pred             HHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          131 VSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       131 ~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.+...  ..+.||+|+........+..+.+.|+++ |+++..-
T Consensus       153 ~~~~~~--~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lv~~~  193 (227)
T 2pbf_A          153 NEEEKK--ELGLFDAIHVGASASELPEILVDLLAEN-GKLIIPI  193 (227)
T ss_dssp             CHHHHH--HHCCEEEEEECSBBSSCCHHHHHHEEEE-EEEEEEE
T ss_pred             ccccCc--cCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEE
Confidence            100001  1237999998776666578899999999 9987664

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=97.26  E-value=0.0018  Score=50.09  Aligned_cols=95  Identities=15%  Similarity=0.140  Sum_probs=66.2

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      .++++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++. . .++.      .+..+.+.....+.||+|+
T Consensus        38 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~-~-~~~~------~d~~~~~~~~~~~~fD~i~  106 (240)
T 3dli_A           38 YFKGCRRVLDIGCGR-GEFLELCKEE-GI-ESIGVDINEDMIKFCEGK-F-NVVK------SDAIEYLKSLPDKYLDGVM  106 (240)
T ss_dssp             GTTTCSCEEEETCTT-THHHHHHHHH-TC-CEEEECSCHHHHHHHHTT-S-EEEC------SCHHHHHHTSCTTCBSEEE
T ss_pred             hhcCCCeEEEEeCCC-CHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh-c-ceee------ccHHHHhhhcCCCCeeEEE
Confidence            356789999999874 6666666665 88 899999999888888776 2 2322      2343333333344899998


Q ss_pred             Eec-----CC---hhhHHHHHHhhhcCCceEEEec
Q 025101          148 ECV-----GL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       148 d~~-----g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      -..     ..   ...+..+.+.|+|+ |.++...
T Consensus       107 ~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  140 (240)
T 3dli_A          107 ISHFVEHLDPERLFELLSLCYSKMKYS-SYIVIES  140 (240)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHBCTT-CCEEEEE
T ss_pred             ECCchhhCCcHHHHHHHHHHHHHcCCC-cEEEEEe
Confidence            632     22   24578889999999 9988654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.26  E-value=0.003  Score=51.20  Aligned_cols=88  Identities=17%  Similarity=0.291  Sum_probs=65.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.++++++. .+++.|+.. .        ++.+.+.     ..|+|+.++
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~-~--------~l~ell~-----~aDvVvl~~  204 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAKA-V--------SLEELLK-----NSDVISLHV  204 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCEE-C--------CHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCcee-c--------CHHHHHh-----hCCEEEEec
Confidence            57899999999999999999999999 999999988765 456777642 1        2322232     489999888


Q ss_pred             CChh----hH-HHHHHhhhcCCceEEEecc
Q 025101          151 GLAS----LV-QEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       151 g~~~----~~-~~~~~~l~~~~G~~v~~g~  175 (258)
                      ....    .+ ...+..++++ +.++.++.
T Consensus       205 P~~~~t~~li~~~~l~~mk~g-a~lIn~ar  233 (313)
T 2ekl_A          205 TVSKDAKPIIDYPQFELMKDN-VIIVNTSR  233 (313)
T ss_dssp             CCCTTSCCSBCHHHHHHSCTT-EEEEESSC
T ss_pred             cCChHHHHhhCHHHHhcCCCC-CEEEECCC
Confidence            7422    12 4566788888 88887764

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.26  E-value=0.001  Score=52.29  Aligned_cols=78  Identities=15%  Similarity=0.200  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCccHHHHHHHhcC--
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.+... .  .|..+  .+++...+.+...  
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK--AEDRERLVAMAVNLH   89 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            5789999986 8999999998888999 999999988765433    2234321 1  23332  1222222222211  


Q ss_pred             CCCCEEEEecC
Q 025101          141 GGADYCFECVG  151 (258)
Q Consensus       141 ~~~d~v~d~~g  151 (258)
                      +++|++|++.|
T Consensus        90 g~iD~lv~~Ag  100 (260)
T 2zat_A           90 GGVDILVSNAA  100 (260)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            37999999887

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.26  E-value=0.00098  Score=51.93  Aligned_cols=79  Identities=22%  Similarity=0.295  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCce-E--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+    ++.+... .  .|..+  .+++.+.+.+... 
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVAN--AEDVTNMVKQTVDV   79 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4688999986 8999999999888999 8999988 66655433    2234322 2  23333  1222222222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|++.|.
T Consensus        80 ~g~id~lv~nAg~   92 (246)
T 2uvd_A           80 FGQVDILVNNAGV   92 (246)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             279999998873

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.26  E-value=0.0012  Score=52.46  Aligned_cols=77  Identities=16%  Similarity=0.170  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hh----cCCce-E--EcCCCCCCcc-HHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KR----FGVTE-F--VNSKNCGDKS-VSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~----~g~~~-v--i~~~~~~~~~-~~~~i~~~~~  140 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ ++    .|... .  .|..+   ++ +.+.+.+...
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~  101 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA---PPAVMAAVDQALK  101 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC---HHHHHHHHHHHHH
Confidence            5789999987 8999999999988999 999999998765433 22    34322 2  23333   33 2222222211


Q ss_pred             --CCCCEEEEecC
Q 025101          141 --GGADYCFECVG  151 (258)
Q Consensus       141 --~~~d~v~d~~g  151 (258)
                        +++|+++++.|
T Consensus       102 ~~g~id~lv~nAg  114 (277)
T 4fc7_A          102 EFGRIDILINCAA  114 (277)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCc
Confidence              27999999987

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.25  E-value=0.0011  Score=52.61  Aligned_cols=91  Identities=8%  Similarity=-0.005  Sum_probs=61.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC--ceEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--TEFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~--~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      .+++++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+ ++++.  ..++...+     +.    .   ..+|+||
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~-----l~----~---~~~DivI  186 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEA-----LE----G---QSFDIVV  186 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGG-----GT----T---CCCSEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHH-----hc----c---cCCCEEE
Confidence            588999999999999999988889977999999999886644 45553  22333222     11    1   3799999


Q ss_pred             EecCChhhH---HHHHHhhhcCCceEEEec
Q 025101          148 ECVGLASLV---QEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       148 d~~g~~~~~---~~~~~~l~~~~G~~v~~g  174 (258)
                      +|++....-   ......++++ ..++.+.
T Consensus       187 naTp~gm~~~~~~i~~~~l~~~-~~V~Dlv  215 (272)
T 3pwz_A          187 NATSASLTADLPPLPADVLGEA-ALAYELA  215 (272)
T ss_dssp             ECSSGGGGTCCCCCCGGGGTTC-SEEEESS
T ss_pred             ECCCCCCCCCCCCCCHHHhCcC-CEEEEee
Confidence            998754310   0123456666 6666665

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.25  E-value=0.0018  Score=49.40  Aligned_cols=97  Identities=14%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +|||+|+ |.+|..+++.+...|+ +|++++|++++.+..  .++ .++..+-   .+..+.+.+... ++|+||.+.|.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~-~~~~~D~---~d~~~~~~~~~~-~~d~vi~~ag~   73 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNV-KAVHFDV---DWTPEEMAKQLH-GMDAIINVSGS   73 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTE-EEEECCT---TSCHHHHHTTTT-TCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCc-eEEEecc---cCCHHHHHHHHc-CCCEEEECCcC
Confidence            6899986 9999999999988898 999999998765432  122 2222221   121334554443 69999999885


Q ss_pred             hh---------hHHHHHHhhhcC-CceEEEecccCC
Q 025101          153 AS---------LVQEAYACCRKG-WGKTIVLGVDQP  178 (258)
Q Consensus       153 ~~---------~~~~~~~~l~~~-~G~~v~~g~~~~  178 (258)
                      ..         .....++.++.. .++++.++....
T Consensus        74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           74 GGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             TTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             CCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence            32         133444444443 158888876543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.25  E-value=0.00059  Score=52.27  Aligned_cols=102  Identities=14%  Similarity=0.165  Sum_probs=67.0

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcC
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      ....++.+||-+|+|. |..+..+++..  +. +|++++.+++..+.+++    .|...-+....   .+..+.+..+..
T Consensus        54 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~  128 (223)
T 3duw_A           54 VQIQGARNILEIGTLG-GYSTIWLARGLSSGG-RVVTLEASEKHADIARSNIERANLNDRVEVRT---GLALDSLQQIEN  128 (223)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTCCSSC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHHH
T ss_pred             HHhhCCCEEEEecCCc-cHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHh
Confidence            3456789999999874 88888888876  45 99999999988877654    45321111111   234343333321


Q ss_pred             ---CCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          141 ---GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ---~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                         +.||+||-....   ...+..+.+.|+|+ |.++.-.
T Consensus       129 ~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~  167 (223)
T 3duw_A          129 EKYEPFDFIFIDADKQNNPAYFEWALKLSRPG-TVIIGDN  167 (223)
T ss_dssp             TTCCCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEES
T ss_pred             cCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCC-cEEEEeC
Confidence               369999943322   34578888999999 9887654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.25  E-value=0.0014  Score=52.13  Aligned_cols=78  Identities=22%  Similarity=0.317  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCC---ce-E--EcCCCCCCcc-HHHHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGV---TE-F--VNSKNCGDKS-VSQIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~---~~-v--i~~~~~~~~~-~~~~i~~~  138 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.+.   .. +  .|-.+   ++ +.+.+.+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~   85 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN---EDETARAVDAV   85 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS---HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC---HHHHHHHHHHH
Confidence            5789999986 8999999998888999 899999998775543    23332   11 1  23332   33 22222222


Q ss_pred             cC--CCCCEEEEecCC
Q 025101          139 TD--GGADYCFECVGL  152 (258)
Q Consensus       139 ~~--~~~d~v~d~~g~  152 (258)
                      ..  +++|+++++.|.
T Consensus        86 ~~~~g~id~lv~nAg~  101 (281)
T 3svt_A           86 TAWHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence            21  279999998884

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.24  E-value=0.0013  Score=51.32  Aligned_cols=76  Identities=14%  Similarity=0.276  Sum_probs=51.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc-eE--EcCCCCCCccHH-HHHHHhcCC--CCC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EF--VNSKNCGDKSVS-QIIIDMTDG--GAD  144 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--i~~~~~~~~~~~-~~i~~~~~~--~~d  144 (258)
                      +++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.. ..  .|..+   ++-. +.+.+....  ++|
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~g~iD   76 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN---RAAIEEMLASLPAEWCNID   76 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC---HHHHHHHHHTSCTTTCCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC---HHHHHHHHHHHHHhCCCCC
Confidence            36889986 8999999998888999 899999998776654 334432 12  23333   3333 333333222  799


Q ss_pred             EEEEecCC
Q 025101          145 YCFECVGL  152 (258)
Q Consensus       145 ~v~d~~g~  152 (258)
                      ++|++.|.
T Consensus        77 ~lvnnAg~   84 (248)
T 3asu_A           77 ILVNNAGL   84 (248)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99998873

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.23  E-value=0.0014  Score=51.08  Aligned_cols=74  Identities=22%  Similarity=0.223  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc-HHHHHHHhcC--CCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS-VSQIIIDMTD--GGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~-~~~~i~~~~~--~~~d~v  146 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.  +  ...|..+   .+ +.+.+.+...  +++|++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~~~---~~~~~~~~~~~~~~~g~id~l   85 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDVTD---SDAVDRAFTAVEEHQGPVEVL   85 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCTTC---HHHHHHHHHHHHHHHSSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccCCC---HHHHHHHHHHHHHHcCCCCEE
Confidence            4788999986 8999999998888999 8999998876543322  1  2234433   32 2222222211  269999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |++.|.
T Consensus        86 v~~Ag~   91 (247)
T 1uzm_A           86 VSNAGL   91 (247)
T ss_dssp             EEECSC
T ss_pred             EECCCC
Confidence            998874

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.22  E-value=0.0004  Score=54.97  Aligned_cols=79  Identities=20%  Similarity=0.194  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHHHHHHhcC--CCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~~~d~v  146 (258)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+...... ...|..+  .+++.+.+.+...  +++|++
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD~l   91 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNTLCAQVDVTD--KYTFDTAITRAEKIYGPADAI   91 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTEEEEECCTTC--HHHHHHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCceEEEecCCC--HHHHHHHHHHHHHHCCCCCEE
Confidence            4689999987 8999999998888999 899999987665443222211 1223333  1222222222211  279999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |++.|.
T Consensus        92 vnnAg~   97 (266)
T 3p19_A           92 VNNAGM   97 (266)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            998884

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.22  E-value=0.0013  Score=49.47  Aligned_cols=96  Identities=15%  Similarity=0.108  Sum_probs=59.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++++.+.....+...+ .|..+   .   +.+.+... ++|+||.+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~~---~---~~~~~~~~-~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVVGDVLQ---A---ADVDKTVA-GQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEESCTTS---H---HHHHHHHT-TCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCceEEEEecCCC---H---HHHHHHHc-CCCEEEECc
Confidence            68999997 9999999999888898 99999998876532211222211 22222   2   22333332 589999998


Q ss_pred             CChh----------hHHHHHHhhhcC-CceEEEeccc
Q 025101          151 GLAS----------LVQEAYACCRKG-WGKTIVLGVD  176 (258)
Q Consensus       151 g~~~----------~~~~~~~~l~~~-~G~~v~~g~~  176 (258)
                      |...          .....++.+... .++++.++..
T Consensus        76 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           76 GTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             CCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             cCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence            7532          133444444332 1578877654

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.22  E-value=0.0039  Score=50.50  Aligned_cols=87  Identities=16%  Similarity=0.266  Sum_probs=61.0

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|.. +.       .+..+.+.     ..|+||.|+..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~~~-----~~DvVi~av~~   96 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGAR-LG-------RTPAEVVS-----TCDITFACVSD   96 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCE-EC-------SCHHHHHH-----HCSEEEECCSS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCE-Ec-------CCHHHHHh-----cCCEEEEeCCC
Confidence            579999999999998888888898 899999999998888777753 21       12323232     47899999886


Q ss_pred             hhhHHHHHH-------hhhcCCceEEEec
Q 025101          153 ASLVQEAYA-------CCRKGWGKTIVLG  174 (258)
Q Consensus       153 ~~~~~~~~~-------~l~~~~G~~v~~g  174 (258)
                      +..+...+.       .+.++ ..++.++
T Consensus        97 ~~~~~~v~~~~~~~~~~l~~~-~~vv~~s  124 (316)
T 2uyy_A           97 PKAAKDLVLGPSGVLQGIRPG-KCYVDMS  124 (316)
T ss_dssp             HHHHHHHHHSTTCGGGGCCTT-CEEEECS
T ss_pred             HHHHHHHHcCchhHhhcCCCC-CEEEECC
Confidence            554555543       34454 5555454

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.22  E-value=0.0011  Score=52.09  Aligned_cols=76  Identities=20%  Similarity=0.381  Sum_probs=48.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce-E--EcCCCCCCccHHHHHHHhc--CCCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-F--VNSKNCGDKSVSQIIIDMT--DGGAD  144 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-v--i~~~~~~~~~~~~~i~~~~--~~~~d  144 (258)
                      +++++||+|+ +++|.++++.+...|+ +|+++++..+  +..++++... .  .|..+   .+-.+.+.+..  -+++|
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~--~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~g~id   81 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGE--DVVADLGDRARFAAADVTD---EAAVASALDLAETMGTLR   81 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCH--HHHHHTCTTEEEEECCTTC---HHHHHHHHHHHHHHSCEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchH--HHHHhcCCceEEEECCCCC---HHHHHHHHHHHHHhCCCC
Confidence            4789999987 8999999988888899 8999988543  3344555332 2  23333   33222222211  13799


Q ss_pred             EEEEecCC
Q 025101          145 YCFECVGL  152 (258)
Q Consensus       145 ~v~d~~g~  152 (258)
                      +++++.|.
T Consensus        82 ~lv~nAg~   89 (257)
T 3tl3_A           82 IVVNCAGT   89 (257)
T ss_dssp             EEEECGGG
T ss_pred             EEEECCCC
Confidence            99999883

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.21  E-value=0.0019  Score=48.93  Aligned_cols=97  Identities=18%  Similarity=0.184  Sum_probs=68.5

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce--EEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      ..+.++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++.+...  ++..+-   .++      ...+.+|
T Consensus        42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~---~~~------~~~~~~D  109 (218)
T 3ou2_A           42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDL---FDW------TPDRQWD  109 (218)
T ss_dssp             TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECCT---TSC------CCSSCEE
T ss_pred             hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEeccc---ccC------CCCCcee
Confidence            3467888999999875 7777788877 77 9999999999999998866322  222211   111      1223899


Q ss_pred             EEEEecCC--------hhhHHHHHHhhhcCCceEEEeccc
Q 025101          145 YCFECVGL--------ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       145 ~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      +|+-...-        ...+..+.+.|+|+ |.++.....
T Consensus       110 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  148 (218)
T 3ou2_A          110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPG-GVVEFVDVT  148 (218)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence            99964322        34578888999999 999877644

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.21  E-value=0.00076  Score=51.69  Aligned_cols=97  Identities=16%  Similarity=0.229  Sum_probs=60.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+. .+. .++.. +..+.+   .+.+... ++|+||.+.|
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~-~~~~~-Dl~d~~---~~~~~~~-~~d~vi~~a~   76 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN-EHL-KVKKA-DVSSLD---EVCEVCK-GADAVISAFN   76 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC-TTE-EEECC-CTTCHH---HHHHHHT-TCSEEEECCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc-Cce-EEEEe-cCCCHH---HHHHHhc-CCCEEEEeCc
Confidence            58999996 9999999999998998 9999999987653221 112 22211 111122   2333333 6999999987


Q ss_pred             Ch-----------hhHHHHHHhhhcC-CceEEEecccC
Q 025101          152 LA-----------SLVQEAYACCRKG-WGKTIVLGVDQ  177 (258)
Q Consensus       152 ~~-----------~~~~~~~~~l~~~-~G~~v~~g~~~  177 (258)
                      ..           ......++.++.. .++++.++...
T Consensus        77 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           77 PGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             C------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence            63           1233455555544 14788887543

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.20  E-value=0.00094  Score=52.05  Aligned_cols=79  Identities=23%  Similarity=0.270  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC--Cc-eEE--cCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG--VT-EFV--NSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g--~~-~vi--~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ +++.  .. .++  |..+  .+++.+.+.+...  +
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   81 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD--EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            4688999987 8999999998888899 899999988766543 3332  11 222  3333  1222222222211  2


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      .+|++|.+.|.
T Consensus        82 ~id~li~~Ag~   92 (251)
T 1zk4_A           82 PVSTLVNNAGI   92 (251)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999998873

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.20  E-value=0.0018  Score=52.05  Aligned_cols=78  Identities=17%  Similarity=0.244  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h--------cCCc-eE--EcCCCCCCccHHHHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R--------FGVT-EF--VNSKNCGDKSVSQIIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~--------~g~~-~v--i~~~~~~~~~~~~~i~~  137 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. +        .+.. .+  .|..+  .+++...+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~   93 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN--EEEVNNLVKS   93 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC--HHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC--HHHHHHHHHH
Confidence            4789999987 8999999998888999 8999999887665432 2        1322 12  23332  1222222222


Q ss_pred             hcC--CCCCEEEEecC
Q 025101          138 MTD--GGADYCFECVG  151 (258)
Q Consensus       138 ~~~--~~~d~v~d~~g  151 (258)
                      ...  +++|++|++.|
T Consensus        94 ~~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            211  26999999887

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.20  E-value=0.0019  Score=51.39  Aligned_cols=80  Identities=25%  Similarity=0.322  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHHHH----hc-CCceEEcCCCCCCccH-HH---HHHHhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGK----RF-GVTEFVNSKNCGDKSV-SQ---IIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~~~----~~-g~~~vi~~~~~~~~~~-~~---~i~~~~  139 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+.    +. +....+-.-+..+.+- .+   .+.+..
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            4689999986 8999999999888999 9999988 444443322    22 3222221222222332 22   222222


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                       +++|++|++.|.
T Consensus       103 -g~iD~lv~nAg~  114 (281)
T 3v2h_A          103 -GGADILVNNAGV  114 (281)
T ss_dssp             -SSCSEEEECCCC
T ss_pred             -CCCCEEEECCCC
Confidence             379999998874

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0022  Score=54.94  Aligned_cols=94  Identities=10%  Similarity=0.135  Sum_probs=61.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh-cCCce-EEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR-FGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~-~g~~~-vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      ++.+|+|+|+|.+|.+++..+... |. +|++++|+.++.+.+.+ .+... .+|..+  .+++.+.+.     ++|+|+
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~~~~~D~~d--~~~l~~~l~-----~~DvVI   93 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSKAISLDVTD--DSALDKVLA-----DNDVVI   93 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCEEEECCTTC--HHHHHHHHH-----TSSEEE
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCcEEEEecCC--HHHHHHHHc-----CCCEEE
Confidence            456899999999999998888877 66 89999999888765543 34322 233332  012222221     699999


Q ss_pred             EecCChhhHHHHHHhhhcCCceEEEe
Q 025101          148 ECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       148 d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      +|++..........++.++ -.++..
T Consensus        94 n~tp~~~~~~v~~a~l~~g-~~vvd~  118 (467)
T 2axq_A           94 SLIPYTFHPNVVKSAIRTK-TDVVTS  118 (467)
T ss_dssp             ECSCGGGHHHHHHHHHHHT-CEEEEC
T ss_pred             ECCchhhhHHHHHHHHhcC-CEEEEe
Confidence            9998754333444566665 555544

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.20  E-value=0.0016  Score=55.87  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=67.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -.|++|.|+|.|.+|..+++.++.+|+ +|+++++++.+.......|.. +        .++.    +... ..|+|+-+
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~-~--------~~l~----ell~-~aDiVi~~  339 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYR-V--------VTME----YAAD-KADIFVTA  339 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCE-E--------CCHH----HHTT-TCSEEEEC
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCE-e--------CCHH----HHHh-cCCEEEEC
Confidence            468999999999999999999999999 999999988765444455653 2        1222    2222 59999998


Q ss_pred             cCChhhH-HHHHHhhhcCCceEEEeccc
Q 025101          150 VGLASLV-QEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       150 ~g~~~~~-~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ++....+ ...+..++++ ..++.+|..
T Consensus       340 ~~t~~lI~~~~l~~MK~g-AilINvgrg  366 (494)
T 3d64_A          340 TGNYHVINHDHMKAMRHN-AIVCNIGHF  366 (494)
T ss_dssp             SSSSCSBCHHHHHHCCTT-EEEEECSSS
T ss_pred             CCcccccCHHHHhhCCCC-cEEEEcCCC
Confidence            8655433 4677888998 888888754

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.20  E-value=0.0039  Score=50.99  Aligned_cols=87  Identities=26%  Similarity=0.427  Sum_probs=62.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|.|+|.|.+|..+++.++..|. +|++.++++++ +.++++|+. .        .++.+.+.     ..|+|+.++
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~-~--------~~l~~~l~-----~aDvVil~v  212 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNAE-F--------KPLEDLLR-----ESDFVVLAV  212 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCCE-E--------CCHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCcc-c--------CCHHHHHh-----hCCEEEECC
Confidence            56799999999999999999999999 99999998877 666666652 1        12333232     478888877


Q ss_pred             CChh----hH-HHHHHhhhcCCceEEEec
Q 025101          151 GLAS----LV-QEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~~~----~~-~~~~~~l~~~~G~~v~~g  174 (258)
                      +...    .+ ......++++ ..++.++
T Consensus       213 p~~~~t~~~i~~~~~~~mk~~-ailIn~s  240 (334)
T 2dbq_A          213 PLTRETYHLINEERLKLMKKT-AILINIA  240 (334)
T ss_dssp             CCCTTTTTCBCHHHHHHSCTT-CEEEECS
T ss_pred             CCChHHHHhhCHHHHhcCCCC-cEEEECC
Confidence            6532    12 3456667776 7776665

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.20  E-value=0.0045  Score=49.93  Aligned_cols=89  Identities=15%  Similarity=0.068  Sum_probs=62.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+. ..       .+..+.+.     ..|+||-++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~-~~-------~~~~e~~~-----~aDvVi~~vp   74 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGAH-LC-------ESVKAALS-----ASPATIFVLL   74 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTCE-EC-------SSHHHHHH-----HSSEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe-ec-------CCHHHHHh-----cCCEEEEEeC
Confidence            4689999999999999988888899 899999999998888777753 11       23333333     3789999888


Q ss_pred             ChhhHHHHHH-----hhhcCCceEEEecc
Q 025101          152 LASLVQEAYA-----CCRKGWGKTIVLGV  175 (258)
Q Consensus       152 ~~~~~~~~~~-----~l~~~~G~~v~~g~  175 (258)
                      .+..+...+.     .+.++ ..++.++.
T Consensus        75 ~~~~~~~v~~~~~l~~~~~g-~ivid~st  102 (306)
T 3l6d_A           75 DNHATHEVLGMPGVARALAH-RTIVDYTT  102 (306)
T ss_dssp             SHHHHHHHHTSTTHHHHTTT-CEEEECCC
T ss_pred             CHHHHHHHhcccchhhccCC-CEEEECCC
Confidence            7654444332     23444 55555543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.19  E-value=0.00076  Score=52.36  Aligned_cols=102  Identities=17%  Similarity=0.191  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc---
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT---  139 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~---  139 (258)
                      ...++++||-+|+|. |..++.+++.++ ..+|++++.+++..+.+++    .|...-+....   .+..+.+..+.   
T Consensus        67 ~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---gda~~~l~~l~~~~  142 (237)
T 3c3y_A           67 KLVNAKKTIEVGVFT-GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIE---SDAMLALDNLLQGQ  142 (237)
T ss_dssp             HHTTCCEEEEECCTT-SHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHST
T ss_pred             HhhCCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHhcc
Confidence            345678999999874 778888888763 2399999999988877754    45431111111   23444443331   


Q ss_pred             --CCCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          140 --DGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 --~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                        .+.||+||-....   ...++.+.+.|+|+ |.++.-.
T Consensus       143 ~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pG-G~lv~d~  181 (237)
T 3c3y_A          143 ESEGSYDFGFVDADKPNYIKYHERLMKLVKVG-GIVAYDN  181 (237)
T ss_dssp             TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCCCcCEEEECCchHHHHHHHHHHHHhcCCC-eEEEEec
Confidence              2479999843322   33478889999999 9887543

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=97.19  E-value=0.0028  Score=51.47  Aligned_cols=89  Identities=18%  Similarity=0.200  Sum_probs=64.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcC-CcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.++ ++++ +.++++|+. ..       .++.+.+.     ..|+|+-+
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~-~~-------~~l~ell~-----~aDvVil~  209 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQAT-FH-------DSLDSLLS-----VSQFFSLN  209 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCE-EC-------SSHHHHHH-----HCSEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcE-Ec-------CCHHHHHh-----hCCEEEEe
Confidence            57899999999999999999999999 9999998 7766 455667763 21       12333332     48999988


Q ss_pred             cCChh----hH-HHHHHhhhcCCceEEEecc
Q 025101          150 VGLAS----LV-QEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       150 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~  175 (258)
                      +....    .+ ...+..++++ ..++.++.
T Consensus       210 ~p~~~~t~~~i~~~~l~~mk~g-ailIn~ar  239 (320)
T 1gdh_A          210 APSTPETRYFFNKATIKSLPQG-AIVVNTAR  239 (320)
T ss_dssp             CCCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             ccCchHHHhhcCHHHHhhCCCC-cEEEECCC
Confidence            77421    12 3456778887 88877764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.18  E-value=0.003  Score=52.00  Aligned_cols=89  Identities=21%  Similarity=0.307  Sum_probs=62.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHH-HcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~-~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      .|.+|.|+|.|.+|..+++.++ ..|. +|++.++++++.+...++|+..+        .++.+.+.     ..|+|+.+
T Consensus       162 ~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~-----~aDvVil~  227 (348)
T 2w2k_A          162 RGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV--------DSLEELAR-----RSDCVSVS  227 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHHH-----HCSEEEEC
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe--------CCHHHHhc-----cCCEEEEe
Confidence            5789999999999999999999 9999 99999998877776666675321        12322232     47888887


Q ss_pred             cCChh----hH-HHHHHhhhcCCceEEEec
Q 025101          150 VGLAS----LV-QEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       150 ~g~~~----~~-~~~~~~l~~~~G~~v~~g  174 (258)
                      +....    .+ ...+..++++ ..++.++
T Consensus       228 vp~~~~t~~li~~~~l~~mk~g-ailin~s  256 (348)
T 2w2k_A          228 VPYMKLTHHLIDEAFFAAMKPG-SRIVNTA  256 (348)
T ss_dssp             CCCSGGGTTCBCHHHHHHSCTT-EEEEECS
T ss_pred             CCCChHHHHHhhHHHHhcCCCC-CEEEECC
Confidence            76421    11 2455667776 6666554

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.18  E-value=0.0016  Score=51.06  Aligned_cols=77  Identities=19%  Similarity=0.262  Sum_probs=49.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch--HHHH-Hh---cCCce-E--EcCCCCCCcc-HHHHHHHhcC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIG-KR---FGVTE-F--VNSKNCGDKS-VSQIIIDMTD  140 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~--~~~~-~~---~g~~~-v--i~~~~~~~~~-~~~~i~~~~~  140 (258)
                      ++++||+|+ |++|.++++.+...|+ +|+++++++++  .+.+ ++   .+... .  .|..+   .+ +.+.+.+...
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~   77 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD---KANFDSAIDEAAE   77 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCC---HHHHHHHHHHHHH
Confidence            578999986 8999999888888899 89999988776  4332 22   24321 2  23333   33 2222222211


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|++|++.|.
T Consensus        78 ~~g~iD~lv~nAg~   91 (258)
T 3a28_C           78 KLGGFDVLVNNAGI   91 (258)
T ss_dssp             HHTCCCEEEECCCC
T ss_pred             HhCCCCEEEECCCC
Confidence              279999998873

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.18  E-value=0.0011  Score=51.75  Aligned_cols=78  Identities=17%  Similarity=0.175  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCccHH-HHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVS-QIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~-~~i~~~~~-  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+... +  .|..+   .+.. +.+.+... 
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS---EQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCC---HHHHHHHHHHHHHh
Confidence            4789999987 8999999998888899 899999988765433    2234321 2  23332   3322 22222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|.+.|.
T Consensus        86 ~~~~d~vi~~Ag~   98 (255)
T 1fmc_A           86 LGKVDILVNNAGG   98 (255)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             279999998873

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.18  E-value=0.0016  Score=51.11  Aligned_cols=41  Identities=20%  Similarity=0.162  Sum_probs=35.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  112 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~  112 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQET   47 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            4689999987 8999999988888899 999999998776544

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=97.17  E-value=0.0023  Score=52.69  Aligned_cols=88  Identities=19%  Similarity=0.177  Sum_probs=63.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.+++. +.+.+.+.|+.. .       .++.+.+.     ..|+|+-++
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~~-~-------~~l~ell~-----~aDiV~l~~  223 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFAV-A-------ESKDALFE-----QSDVLSVHL  223 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCEE-C-------SSHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCceE-e-------CCHHHHHh-----hCCEEEEec
Confidence            47899999999999999999999999 999999875 445566677632 1       23433333     478888877


Q ss_pred             CCh-h----hHHHHHHhhhcCCceEEEec
Q 025101          151 GLA-S----LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~~-~----~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ... .    .-...+..++++ ..++.++
T Consensus       224 Plt~~t~~li~~~~l~~mk~g-ailIN~a  251 (352)
T 3gg9_A          224 RLNDETRSIITVADLTRMKPT-ALFVNTS  251 (352)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred             cCcHHHHHhhCHHHHhhCCCC-cEEEECC
Confidence            532 1    123566778887 8888776

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.17  E-value=0.00061  Score=52.22  Aligned_cols=103  Identities=14%  Similarity=0.139  Sum_probs=67.8

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcC-
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~-  140 (258)
                      ....++.+||-+|+|. |..+..+++.++ ..+|++++.+++..+.+++    .|...-+....   .+..+.+..... 
T Consensus        60 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~  135 (225)
T 3tr6_A           60 VKLMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL---SPAKDTLAELIHA  135 (225)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHHTT
T ss_pred             HHhhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe---CCHHHHHHHhhhc
Confidence            3445788999999875 888888888763 3399999999988877654    35321011111   234444443322 


Q ss_pred             ---CCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          141 ---GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ---~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                         +.||+||-....   ...+..+.+.|+|+ |.++.-.
T Consensus       136 ~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  174 (225)
T 3tr6_A          136 GQAWQYDLIYIDADKANTDLYYEESLKLLREG-GLIAVDN  174 (225)
T ss_dssp             TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cCCCCccEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEeC
Confidence               479999943332   33477888999999 9988654

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.17  E-value=0.0015  Score=50.86  Aligned_cols=77  Identities=19%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----CCc-eE--EcCCCCCCccHHHHHHHhcC--
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVT-EF--VNSKNCGDKSVSQIIIDMTD--  140 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g~~-~v--i~~~~~~~~~~~~~i~~~~~--  140 (258)
                      ++++||+|+ |++|..++..+...|+ +|+++++++++.+.+. ++    +.. .+  .|..+  .+++.+.+.+...  
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   78 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVAD--EGDVNAAIAATMEQF   78 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            578999986 8999999998888999 8999999887765432 22    322 12  23332  1222222222211  


Q ss_pred             CCCCEEEEecC
Q 025101          141 GGADYCFECVG  151 (258)
Q Consensus       141 ~~~d~v~d~~g  151 (258)
                      +++|++|.+.|
T Consensus        79 ~~id~li~~Ag   89 (250)
T 2cfc_A           79 GAIDVLVNNAG   89 (250)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            26999999886

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.16  E-value=0.0019  Score=55.17  Aligned_cols=91  Identities=20%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -.|++|.|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+. +        .++.+    ... ..|+|+-+
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~--------~~l~e----ll~-~aDiVi~~  319 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-V--------VTLDE----IVD-KGDFFITC  319 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-E--------CCHHH----HTT-TCSEEEEC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-e--------cCHHH----HHh-cCCEEEEC
Confidence            468999999999999999999999999 999999998775445556652 2        12222    222 58999988


Q ss_pred             cCChhhH-HHHHHhhhcCCceEEEeccc
Q 025101          150 VGLASLV-QEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       150 ~g~~~~~-~~~~~~l~~~~G~~v~~g~~  176 (258)
                      .+....+ ...+..++++ ..++.+|..
T Consensus       320 ~~t~~lI~~~~l~~MK~g-ailiNvgrg  346 (479)
T 1v8b_A          320 TGNVDVIKLEHLLKMKNN-AVVGNIGHF  346 (479)
T ss_dssp             CSSSSSBCHHHHTTCCTT-CEEEECSST
T ss_pred             CChhhhcCHHHHhhcCCC-cEEEEeCCC
Confidence            7665533 3667788888 888888753

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.16  E-value=0.0013  Score=52.31  Aligned_cols=77  Identities=26%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h---cCC---c-eE--EcCCCCCCccHH-HHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R---FGV---T-EF--VNSKNCGDKSVS-QIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~---~g~---~-~v--i~~~~~~~~~~~-~~i~~~  138 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +   .+.   . .+  .|..+   .+-. +.+.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~   80 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT---EDGQDQIINST   80 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS---HHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC---HHHHHHHHHHH
Confidence            4688999986 8999999998888899 9999999987765432 2   232   2 12  23333   3322 222222


Q ss_pred             cC--CCCCEEEEecC
Q 025101          139 TD--GGADYCFECVG  151 (258)
Q Consensus       139 ~~--~~~d~v~d~~g  151 (258)
                      ..  +++|++|++.|
T Consensus        81 ~~~~g~iD~lv~nAg   95 (280)
T 1xkq_A           81 LKQFGKIDVLVNNAG   95 (280)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHhcCCCCEEEECCC
Confidence            11  26999999887

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.16  E-value=0.0032  Score=51.30  Aligned_cols=129  Identities=16%  Similarity=0.192  Sum_probs=76.2

Q ss_pred             EEEEEccCHHHHHH-HHHHHHcCCCeEE-EEcCCcchHHH-HHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           74 TVVIFGLGSIGLAV-AEGARLCGATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        74 ~vlI~G~g~~G~~a-~~l~~~~g~~~v~-~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      +|.|+|+|.+|... +..++..+. +++ +.++++++.+. .+++|...++       .++.+.+.+   .++|+|+.++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~-~~vav~d~~~~~~~~~~~~~g~~~~~-------~~~~~~l~~---~~~D~V~i~t   70 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGG-EVVSMMSTSAERGAAYATENGIGKSV-------TSVEELVGD---PDVDAVYVST   70 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTC-EEEEEECSCHHHHHHHHHHTTCSCCB-------SCHHHHHTC---TTCCEEEECS
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCC-eEEEEECCCHHHHHHHHHHcCCCccc-------CCHHHHhcC---CCCCEEEEeC
Confidence            58899999999876 544433677 665 45777776654 5567764222       233332221   2799999999


Q ss_pred             CChhhHHHHHHhhhcCCceEEEecccCCCCceeechH---HH----HhcCceEEecccCCCCCCCcHHHHHHHHHcCCC
Q 025101          151 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF---EV----LHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  222 (258)
Q Consensus       151 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  222 (258)
                      ......+.+..++..  |+-+++...     ...+..   .+    -.+++.+.-..  ...+...++.+.+++.+|.+
T Consensus        71 p~~~h~~~~~~al~~--Gk~v~~ekP-----~~~~~~~~~~l~~~a~~~g~~~~~~~--~~r~~p~~~~~~~~i~~g~i  140 (332)
T 2glx_A           71 TNELHREQTLAAIRA--GKHVLCEKP-----LAMTLEDAREMVVAAREAGVVLGTNH--HLRNAAAHRAMRDAIAEGRI  140 (332)
T ss_dssp             CGGGHHHHHHHHHHT--TCEEEECSS-----SCSSHHHHHHHHHHHHHHTCCEEECC--CGGGSHHHHHHHHHHHTTTT
T ss_pred             ChhHhHHHHHHHHHC--CCeEEEeCC-----CcCCHHHHHHHHHHHHHcCCEEEEee--hhhcCHHHHHHHHHHHcCCC
Confidence            987767777777776  555555422     111111   11    22344443221  22234557888888888865

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.15  E-value=0.0032  Score=49.96  Aligned_cols=84  Identities=19%  Similarity=0.209  Sum_probs=58.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +|.|+|+|.+|.+.+..+...|. +|+++++++++.+.+++.|.. .+.+       +.    .+.  .+.|+||-|+..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~-------~~----~~~--~~~D~vi~av~~   67 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQ-------DL----SLL--QTAKIIFLCTPI   67 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEES-------CG----GGG--TTCSEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCccccC-------CH----HHh--CCCCEEEEECCH
Confidence            68899999999999988888898 899999999988888887753 2221       11    112  268999999986


Q ss_pred             hhhHHHHH----HhhhcCCceEEEe
Q 025101          153 ASLVQEAY----ACCRKGWGKTIVL  173 (258)
Q Consensus       153 ~~~~~~~~----~~l~~~~G~~v~~  173 (258)
                      .. ....+    ..++++ ..++.+
T Consensus        68 ~~-~~~~~~~l~~~~~~~-~~vv~~   90 (279)
T 2f1k_A           68 QL-ILPTLEKLIPHLSPT-AIVTDV   90 (279)
T ss_dssp             HH-HHHHHHHHGGGSCTT-CEEEEC
T ss_pred             HH-HHHHHHHHHhhCCCC-CEEEEC
Confidence            54 33333    334444 555544

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.15  E-value=0.0015  Score=52.99  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=30.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|++++++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~   79 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLC   79 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence            5789999986 8999999999988999 89998765

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.15  E-value=0.0013  Score=53.52  Aligned_cols=80  Identities=25%  Similarity=0.302  Sum_probs=50.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC----------cchHHH----HHhcCCceEEcCCCCCCccHH---
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI----------SEKFEI----GKRFGVTEFVNSKNCGDKSVS---  132 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~----------~~~~~~----~~~~g~~~vi~~~~~~~~~~~---  132 (258)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++          .++.+.    +++.|....+..-+.++.+-.   
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            5789999986 8999999998888899 99999876          344332    233453322222222223222   


Q ss_pred             -HHHHHhcCCCCCEEEEecCC
Q 025101          133 -QIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus       133 -~~i~~~~~~~~d~v~d~~g~  152 (258)
                       +.+.+.. +++|++|++.|.
T Consensus       105 ~~~~~~~~-g~iD~lv~nAg~  124 (322)
T 3qlj_A          105 IQTAVETF-GGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHH-SCCCEEECCCCC
T ss_pred             HHHHHHHc-CCCCEEEECCCC
Confidence             2222222 279999998874

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.15  E-value=0.0014  Score=51.63  Aligned_cols=79  Identities=14%  Similarity=0.164  Sum_probs=51.9

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcC---CCeEEEEcCCcchHHHHHhc---CCc-eE--EcCCCCCCccHHH---HHH
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCG---ATRIIGVDVISEKFEIGKRF---GVT-EF--VNSKNCGDKSVSQ---III  136 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g---~~~v~~~~~~~~~~~~~~~~---g~~-~v--i~~~~~~~~~~~~---~i~  136 (258)
                      -+++++||+|+ |++|..+++.+...|   + +|+++++++++.+.++++   +.. .+  .|..+  .+++.+   .+.
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~   95 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN--FDAYDKLVADIE   95 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC--GGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCC--hHHHHHHHHHHH
Confidence            35679999987 899999999888889   7 999999988765544432   322 22  23333  123333   333


Q ss_pred             HhcCC-CCCEEEEecC
Q 025101          137 DMTDG-GADYCFECVG  151 (258)
Q Consensus       137 ~~~~~-~~d~v~d~~g  151 (258)
                      +..+. ++|++|.+.|
T Consensus        96 ~~~g~~~id~li~~Ag  111 (267)
T 1sny_A           96 GVTKDQGLNVLFNNAG  111 (267)
T ss_dssp             HHHGGGCCSEEEECCC
T ss_pred             HhcCCCCccEEEECCC
Confidence            33333 6999999887

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.15  E-value=0.00077  Score=52.49  Aligned_cols=74  Identities=12%  Similarity=0.187  Sum_probs=46.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHH-----HHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQII-----IDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i-----~~~~~--~~  142 (258)
                      .++++||+|+ |++|.++++.+.. |+ +|+++++++++.+.+.+......+..      ++.+..     .+...  ++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~------D~~~~~~~~~~~~~~~~~~~   75 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIES------DIVKEVLEEGGVDKLKNLDH   75 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEEC------CHHHHHHTSSSCGGGTTCSC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCcceec------ccchHHHHHHHHHHHHhcCC
Confidence            4689999987 8999998877765 88 89999999888777666432122211      222211     11111  26


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|++.|.
T Consensus        76 id~lv~~Ag~   85 (245)
T 3e9n_A           76 VDTLVHAAAV   85 (245)
T ss_dssp             CSEEEECC--
T ss_pred             CCEEEECCCc
Confidence            9999998875

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.14  E-value=0.0019  Score=51.68  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=34.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEc-CCcchHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG  112 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~-~~~~~~~~~  112 (258)
                      .++++||+|+ |++|.++++.+...|+ +|++++ +++++.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~   50 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   50 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence            4788999986 8999999999988999 899999 888765543

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.0024  Score=51.09  Aligned_cols=79  Identities=20%  Similarity=0.209  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCC--CeEEEEcCCcchHHHHHh-c-----CCce-E--EcCCCCCCccHHHHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGA--TRIIGVDVISEKFEIGKR-F-----GVTE-F--VNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~--~~v~~~~~~~~~~~~~~~-~-----g~~~-v--i~~~~~~~~~~~~~i~~~  138 (258)
                      .|+++||+|+ |++|.++++.+...|+  .+|+++++++++.+.+.+ +     +... +  .|..+  .+++.+.+.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~  109 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQ--AEKIKPFIENL  109 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTC--GGGHHHHHHTS
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHH
Confidence            4789999987 8999998876665554  289999999887665432 2     3221 1  23333  23344444443


Q ss_pred             cCC--CCCEEEEecC
Q 025101          139 TDG--GADYCFECVG  151 (258)
Q Consensus       139 ~~~--~~d~v~d~~g  151 (258)
                      ...  ++|++|++.|
T Consensus       110 ~~~~g~iD~lVnnAG  124 (287)
T 3rku_A          110 PQEFKDIDILVNNAG  124 (287)
T ss_dssp             CGGGCSCCEEEECCC
T ss_pred             HHhcCCCCEEEECCC
Confidence            322  7999999887

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.14  E-value=0.0014  Score=52.24  Aligned_cols=79  Identities=15%  Similarity=0.221  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCccHHHHHHHhc--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~--~  140 (258)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+... +  .|..+  .+++.+.+.+..  -
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK--KEEISEVINKILTEH  119 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCC--HHHHHHHHHHHHHhc
Confidence            4689999987 8999999988888899 899988887765543    2234332 2  23333  122222232221  1


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|++|.+.|.
T Consensus       120 ~~id~li~~Ag~  131 (285)
T 2c07_A          120 KNVDILVNNAGI  131 (285)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=97.14  E-value=0.0027  Score=47.89  Aligned_cols=99  Identities=15%  Similarity=0.126  Sum_probs=63.8

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CC----------------c-eEEcCCCC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV----------------T-EFVNSKNC  126 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~----------------~-~vi~~~~~  126 (258)
                      ....+.++.+||..|+|. |..+..+++. |+ +|++++.|++..+.+++. +.                . .++..+- 
T Consensus        16 ~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~-   91 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF-   91 (203)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC-
T ss_pred             HhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc-
Confidence            344567889999999974 7788888876 88 999999999988887652 21                1 1221111 


Q ss_pred             CCccHHHHHHHhcCCCCCEEEEecCC--------hhhHHHHHHhhhcCCceEEEec
Q 025101          127 GDKSVSQIIIDMTDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       127 ~~~~~~~~i~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                        .++..  .+  .+.||+|++...-        ...+..+.+.|+|+ |+++++.
T Consensus        92 --~~l~~--~~--~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg-G~~~l~~  140 (203)
T 1pjz_A           92 --FALTA--RD--IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLIT  140 (203)
T ss_dssp             --SSSTH--HH--HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEEE
T ss_pred             --ccCCc--cc--CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence              11110  00  0269999974321        12467888999999 9954443

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.14  E-value=0.002  Score=53.75  Aligned_cols=90  Identities=16%  Similarity=0.106  Sum_probs=63.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.+++.++.+..+++|+...        .++.+.+ +    ..|+|+.++
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~~~--------~~l~ell-~----~aDvV~l~~  255 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH--------ATREDMY-P----VCDVVTLNC  255 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHG-G----GCSEEEECS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCceec--------CCHHHHH-h----cCCEEEEec
Confidence            57899999999999999999999999 99999988777777777776421        1222211 1    478888877


Q ss_pred             CCh-h---hH-HHHHHhhhcCCceEEEecc
Q 025101          151 GLA-S---LV-QEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       151 g~~-~---~~-~~~~~~l~~~~G~~v~~g~  175 (258)
                      ... .   .+ ...+..++++ ..++.++.
T Consensus       256 Plt~~t~~li~~~~l~~mk~g-ailIN~aR  284 (393)
T 2nac_A          256 PLHPETEHMINDETLKLFKRG-AYIVNTAR  284 (393)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             CCchHHHHHhhHHHHhhCCCC-CEEEECCC
Confidence            632 1   12 3556677777 77776663

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.13  E-value=0.0018  Score=52.43  Aligned_cols=101  Identities=18%  Similarity=0.247  Sum_probs=69.5

Q ss_pred             hhcC-CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHH
Q 025101           65 RTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        65 ~~~~-~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~  136 (258)
                      +... +.++++||-+|+|. |..+..+++..|. +|++++.+++..+.+++    .|..   .++..+-   .++     
T Consensus       110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~-----  179 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM---LDT-----  179 (312)
T ss_dssp             TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC-----
T ss_pred             HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hcC-----
Confidence            3444 78899999999875 8888888887788 99999999988877754    4422   2222211   111     


Q ss_pred             HhcCCCCCEEEEec-----CChhhHHHHHHhhhcCCceEEEeccc
Q 025101          137 DMTDGGADYCFECV-----GLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       137 ~~~~~~~d~v~d~~-----g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ....+.||+|+...     +....+..+.+.|+|+ |+++.....
T Consensus       180 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  223 (312)
T 3vc1_A          180 PFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVG-GRYVTITGC  223 (312)
T ss_dssp             CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE-EEEEEEEEE
T ss_pred             CCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCC-cEEEEEEcc
Confidence            01123799998632     2244588999999999 999877643

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.13  E-value=0.0014  Score=52.61  Aligned_cols=77  Identities=25%  Similarity=0.270  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC---c-eE--EcCCCCCCcc-HHHHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV---T-EF--VNSKNCGDKS-VSQIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~---~-~v--i~~~~~~~~~-~~~~i~~~  138 (258)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.+.   . .+  .|..+   .+ +.+.+.+.
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~  100 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE---ASGQDDIINTT  100 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS---HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC---HHHHHHHHHHH
Confidence            5789999986 8999999998888899 8999999987765432    2232   2 12  23333   33 22222222


Q ss_pred             cC--CCCCEEEEecC
Q 025101          139 TD--GGADYCFECVG  151 (258)
Q Consensus       139 ~~--~~~d~v~d~~g  151 (258)
                      ..  +++|++|++.|
T Consensus       101 ~~~~g~iD~lvnnAG  115 (297)
T 1xhl_A          101 LAKFGKIDILVNNAG  115 (297)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHhcCCCCEEEECCC
Confidence            11  27999999887

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.12  E-value=0.0058  Score=50.21  Aligned_cols=135  Identities=9%  Similarity=0.051  Sum_probs=83.2

Q ss_pred             EEEEEccCHHHHH-HHHHHHHc-CCCeEEEE-cCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           74 TVVIFGLGSIGLA-VAEGARLC-GATRIIGV-DVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        74 ~vlI~G~g~~G~~-a~~l~~~~-g~~~v~~~-~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      ++.|+|+|.+|.. .+...+.. ++ +++++ ++++++.+ +++++|...++       .++.+.+.+   ..+|+|+-|
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g~~~~y-------~d~~ell~~---~~iDaV~I~   93 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENC-VVTAIASRDLTRAREMADRFSVPHAF-------GSYEEMLAS---DVIDAVYIP   93 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSE-EEEEEECSSHHHHHHHHHHHTCSEEE-------SSHHHHHHC---SSCSEEEEC
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHcCCCeee-------CCHHHHhcC---CCCCEEEEe
Confidence            7889999999975 45555554 66 67654 55666644 56779977665       334444432   279999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEecccCCCCceeec-hHH-HHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS-SFE-VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      +......+.+..++..  |+-|++..+......... ... .-.+++.+.-.+  ...+...++.+-+++.+|.+-
T Consensus        94 tP~~~H~~~~~~al~a--GkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~--~~R~~p~~~~~k~~i~~G~iG  165 (350)
T 4had_A           94 LPTSQHIEWSIKAADA--GKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAY--MITYSPVWQKVRSLIDEGAIG  165 (350)
T ss_dssp             SCGGGHHHHHHHHHHT--TCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECC--GGGGSHHHHHHHHHHHTTTTS
T ss_pred             CCCchhHHHHHHHHhc--CCEEEEeCCcccchhhHHHHHHHHHHcCCceeEee--eeecCHHHHHhhHhhhcCCCC
Confidence            9988878888888885  666777643221110000 011 122344433222  233345688888899998653

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.12  E-value=0.0016  Score=50.83  Aligned_cols=79  Identities=23%  Similarity=0.273  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC-cchHHHH----HhcCCc-eE--EcCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~-~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|++++++ +++.+.+    ++.+.. .+  .|..+  .+++.+.+.+... 
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLAT--SEACQQLVDEFVAK   82 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4689999986 8999999998888899 89999988 6665433    223432 12  23332  1222222322221 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|.+.|.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             269999998874

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.11  E-value=0.0011  Score=52.67  Aligned_cols=78  Identities=19%  Similarity=0.220  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc---C---Cc-eE--EcCCCCCCcc-HHHHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---G---VT-EF--VNSKNCGDKS-VSQIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~---g---~~-~v--i~~~~~~~~~-~~~~i~~~  138 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++   +   .. .+  .|..+   .+ +.+.+.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~   80 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT---DAGQDEILSTT   80 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS---HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC---HHHHHHHHHHH
Confidence            4688999987 8999999988888899 9999999987765432 23   2   11 12  23333   33 22222222


Q ss_pred             cC--CCCCEEEEecCC
Q 025101          139 TD--GGADYCFECVGL  152 (258)
Q Consensus       139 ~~--~~~d~v~d~~g~  152 (258)
                      ..  +++|++|++.|.
T Consensus        81 ~~~~g~id~lv~~Ag~   96 (278)
T 1spx_A           81 LGKFGKLDILVNNAGA   96 (278)
T ss_dssp             HHHHSCCCEEEECCC-
T ss_pred             HHHcCCCCEEEECCCC
Confidence            11  279999998874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.11  E-value=0.00074  Score=51.94  Aligned_cols=96  Identities=21%  Similarity=0.179  Sum_probs=67.0

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCC------CeEEEEcCCcchHHHHHhc----C-----Cc--eEEcCCCCCCcc
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGA------TRIIGVDVISEKFEIGKRF----G-----VT--EFVNSKNCGDKS  130 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~------~~v~~~~~~~~~~~~~~~~----g-----~~--~vi~~~~~~~~~  130 (258)
                      .++++++||.+|+|. |..+..+++..|.      .+|++++.+++..+.+++.    +     ..  .++..+      
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d------  153 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD------  153 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC------
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECC------
Confidence            478899999999986 8888888887652      3899999999888776542    2     11  222211      


Q ss_pred             HHHHHHHhcC-CCCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          131 VSQIIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       131 ~~~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..+   .... +.||+|+.+.........+.+.|+++ |+++..-
T Consensus       154 ~~~---~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  194 (227)
T 1r18_A          154 GRK---GYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVPV  194 (227)
T ss_dssp             GGG---CCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             ccc---CCCcCCCccEEEECCchHHHHHHHHHHhcCC-CEEEEEE
Confidence            111   1112 37999998776666578899999999 9987653

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.11  E-value=0.0053  Score=51.37  Aligned_cols=109  Identities=16%  Similarity=0.128  Sum_probs=70.4

Q ss_pred             hhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----------cCC--ce--EEcCC
Q 025101           60 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----------FGV--TE--FVNSK  124 (258)
Q Consensus        60 ~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-----------~g~--~~--vi~~~  124 (258)
                      +..+.....+++|++||=+|+|. |..++++++..|+.+|++++.+++..+.+++           +|.  ..  ++..+
T Consensus       162 i~~il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          162 VAQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCTT-SHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            33455677899999999999984 8889999988898679999999865554432           342  22  22222


Q ss_pred             CCCCccHHHHHHHhcCCCCCEEEEecC--C---hhhHHHHHHhhhcCCceEEEeccc
Q 025101          125 NCGDKSVSQIIIDMTDGGADYCFECVG--L---ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       125 ~~~~~~~~~~i~~~~~~~~d~v~d~~g--~---~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      -   .+..  ..+.. ..+|+||-..-  .   ...+....+.|+|| |+++..-..
T Consensus       241 ~---~~lp--~~d~~-~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPG-GrIVssE~f  290 (438)
T 3uwp_A          241 F---LSEE--WRERI-ANTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSKPF  290 (438)
T ss_dssp             T---TSHH--HHHHH-HTCSEEEECCTTCCHHHHHHHHHHHTTSCTT-CEEEESSCS
T ss_pred             c---cCCc--ccccc-CCccEEEEcccccCchHHHHHHHHHHcCCCC-cEEEEeecc
Confidence            1   1211  11111 15999984221  1   22466788899999 999977543

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.11  E-value=0.0032  Score=53.53  Aligned_cols=103  Identities=16%  Similarity=0.211  Sum_probs=71.5

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHH-cCC--CeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcCCCC
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARL-CGA--TRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~-~g~--~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      ++....+|+|+|+|++|..++.++.. .++  ..|++++..+.+.+..+..|...+ ..-..   .+..+.+..+..++ 
T Consensus         9 ~~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vda---dnv~~~l~aLl~~~-   84 (480)
T 2ph5_A            9 KILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITP---QNYLEVIGSTLEEN-   84 (480)
T ss_dssp             CBCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCT---TTHHHHTGGGCCTT-
T ss_pred             eecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccc---hhHHHHHHHHhcCC-
Confidence            44556789999999999999887764 455  368888877766666666775322 22222   55655565555444 


Q ss_pred             CEEEEecCChhhHHHHHHhhhcCCceEEEecc
Q 025101          144 DYCFECVGLASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       144 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      |+|++++-....+..+-.|++.+ -.++....
T Consensus        85 DvVIN~s~~~~~l~Im~acleaG-v~YlDTa~  115 (480)
T 2ph5_A           85 DFLIDVSIGISSLALIILCNQKG-ALYINAAT  115 (480)
T ss_dssp             CEEEECCSSSCHHHHHHHHHHHT-CEEEESSC
T ss_pred             CEEEECCccccCHHHHHHHHHcC-CCEEECCC
Confidence            99999876666577777888887 77777764

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.10  E-value=0.0012  Score=51.90  Aligned_cols=100  Identities=13%  Similarity=0.087  Sum_probs=65.0

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce--EEcCCCCCCccHHHHHHHhcCC
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSVSQIIIDMTDG  141 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~~~i~~~~~~  141 (258)
                      .....+.++.+||-+|+|. |..+..+++. |+ +|++++.+++..+.+++.-...  ..+..+.+.+     ......+
T Consensus        38 l~~l~l~~g~~VLDlGcGt-G~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~-----~~~~~~~  109 (261)
T 3iv6_A           38 IFLENIVPGSTVAVIGAST-RFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAE-----IPKELAG  109 (261)
T ss_dssp             HHTTTCCTTCEEEEECTTC-HHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSC-----CCGGGTT
T ss_pred             HHhcCCCCcCEEEEEeCcc-hHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeeeecccc-----cccccCC
Confidence            3556778999999999984 8888888875 77 9999999999999887633211  1222220000     0001123


Q ss_pred             CCCEEEEecCC--------hhhHHHHHHhhhcCCceEEEe
Q 025101          142 GADYCFECVGL--------ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       142 ~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      .||+|+-+..-        ...+..+.+.+ |+ |++++.
T Consensus       110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG-G~l~lS  147 (261)
T 3iv6_A          110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GS-GTVRAS  147 (261)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred             CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC-cEEEEE
Confidence            79999964321        12466777788 99 998754

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.10  E-value=0.0026  Score=50.85  Aligned_cols=36  Identities=28%  Similarity=0.412  Sum_probs=31.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .+.+|+|+|+|++|..+++.+...|..++.++|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            467999999999999999999889998999988665

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.09  E-value=0.0019  Score=51.15  Aligned_cols=77  Identities=17%  Similarity=0.151  Sum_probs=49.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCce-E--EcCCCCCCccHH-H---HHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVTE-F--VNSKNCGDKSVS-Q---IIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~-~---~i~~  137 (258)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+    ++.+... +  .|..+   .+-. .   .+.+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d---~~~v~~~~~~~~~  102 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQ---ESEVEALFAAVIE  102 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS---HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCC---HHHHHHHHHHHHH
Confidence            5789999986 8999999998888999 8988877 44444332    3344332 2  23333   3322 2   2222


Q ss_pred             hcCCCCCEEEEecCC
Q 025101          138 MTDGGADYCFECVGL  152 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~  152 (258)
                      .. +++|++|++.|.
T Consensus       103 ~~-g~id~lv~nAg~  116 (269)
T 4dmm_A          103 RW-GRLDVLVNNAGI  116 (269)
T ss_dssp             HH-SCCCEEEECCCC
T ss_pred             Hc-CCCCEEEECCCC
Confidence            22 279999998874

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.09  E-value=0.003  Score=49.28  Aligned_cols=100  Identities=22%  Similarity=0.264  Sum_probs=69.2

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  135 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i  135 (258)
                      +.....+.++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++    .|..   .++..+-   .++.   
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~---~~~~---   99 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AGYV---   99 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TTCC---
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh---HhCC---
Confidence            34556788999999999986 8888899988888 99999999988777654    3432   2222211   1110   


Q ss_pred             HHhcCCCCCEEEEec------CChhhHHHHHHhhhcCCceEEEec
Q 025101          136 IDMTDGGADYCFECV------GLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                         ..+.||+|+-..      .....+..+.+.|+|+ |++++..
T Consensus       100 ---~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~  140 (256)
T 1nkv_A          100 ---ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  140 (256)
T ss_dssp             ---CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             ---cCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC-eEEEEec
Confidence               123799998522      2234588899999999 9988754

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.09  E-value=0.0034  Score=51.31  Aligned_cols=88  Identities=31%  Similarity=0.471  Sum_probs=65.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.+++.++ +.+++.|+..         .++.+.+.     ..|+|+.++
T Consensus       164 ~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~---------~~l~ell~-----~aDvV~l~~  227 (335)
T 2g76_A          164 NGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQQ---------LPLEEIWP-----LCDFITVHT  227 (335)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCEE---------CCHHHHGG-----GCSEEEECC
T ss_pred             CcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCcee---------CCHHHHHh-----cCCEEEEec
Confidence            57899999999999999999999999 99999988766 4566777642         12222221     589999887


Q ss_pred             CChh----hH-HHHHHhhhcCCceEEEecc
Q 025101          151 GLAS----LV-QEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       151 g~~~----~~-~~~~~~l~~~~G~~v~~g~  175 (258)
                      +...    .+ ...+..++++ +.++.++.
T Consensus       228 P~t~~t~~li~~~~l~~mk~g-ailIN~ar  256 (335)
T 2g76_A          228 PLLPSTTGLLNDNTFAQCKKG-VRVVNCAR  256 (335)
T ss_dssp             CCCTTTTTSBCHHHHTTSCTT-EEEEECSC
T ss_pred             CCCHHHHHhhCHHHHhhCCCC-cEEEECCC
Confidence            7532    12 3567788888 88888874

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.09  E-value=0.0019  Score=51.13  Aligned_cols=79  Identities=19%  Similarity=0.291  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc-chHHHH----HhcCCce-EE--cCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|++++++. +..+.+    ++.+... ++  |..+  .+++.+.+.+... 
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~  104 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAAS--ESDFIEAIQTIVQS  104 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHh
Confidence            5789999987 8999999988888999 899998844 333332    3344332 22  3222  1222233332221 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|.+.|.
T Consensus       105 ~g~id~li~nAg~  117 (271)
T 4iin_A          105 DGGLSYLVNNAGV  117 (271)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence             279999998874

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.09  E-value=0.0017  Score=51.84  Aligned_cols=40  Identities=25%  Similarity=0.163  Sum_probs=33.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc-chHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEI  111 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~~~  111 (258)
                      +|+++||+|+ |++|.++++.+...|+ +|+++++++ ++.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   63 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVS   63 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHH
Confidence            4788999987 8999999988888899 899999987 65543

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.09  E-value=0.0006  Score=53.13  Aligned_cols=75  Identities=8%  Similarity=-0.052  Sum_probs=51.4

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEE-c--CCcchHHHH-Hhc-CCceEEcCCCCCCccHHHHHHHhcCCCCCE
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-D--VISEKFEIG-KRF-GVTEFVNSKNCGDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~-~--~~~~~~~~~-~~~-g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~  145 (258)
                      |+++||+|+ |++|.++++.+...|+ +|+++ +  +++++.+.+ +++ +. .+.|..+  .+.+.+.+.+.. +++|+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~--v~~~~~~~~~~~-g~iD~   75 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGT-IALAEQK--PERLVDATLQHG-EAIDT   75 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTE-EECCCCC--GGGHHHHHGGGS-SCEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCC-cccCHHH--HHHHHHHHHHHc-CCCCE
Confidence            468999986 8999999999988999 89998 6  888776654 334 33 2333322  234444444433 27999


Q ss_pred             EEEecC
Q 025101          146 CFECVG  151 (258)
Q Consensus       146 v~d~~g  151 (258)
                      +|++.|
T Consensus        76 lv~~Ag   81 (244)
T 1zmo_A           76 IVSNDY   81 (244)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999887

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.09  E-value=0.0012  Score=50.78  Aligned_cols=99  Identities=14%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCceEEcCCCCCCccHHHHHHHhc
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      .....+.++++||.+|+|. |..+..+++.. . +|++++.+++..+.+++.    +...++..+      ..+.+.  .
T Consensus        63 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d------~~~~~~--~  131 (231)
T 1vbf_A           63 LDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILGD------GTLGYE--E  131 (231)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEESC------GGGCCG--G
T ss_pred             HHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEECC------cccccc--c
Confidence            4556778899999999985 88888888764 5 999999999988888763    211222221      111010  1


Q ss_pred             CCCCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          140 DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .+.+|+|+....-......+.+.++|+ |+++..-
T Consensus       132 ~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~l~~~~  165 (231)
T 1vbf_A          132 EKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILPI  165 (231)
T ss_dssp             GCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             CCCccEEEECCcHHHHHHHHHHHcCCC-cEEEEEE
Confidence            237999997665544456888999999 9988664

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.09  E-value=0.0016  Score=51.01  Aligned_cols=79  Identities=20%  Similarity=0.215  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCce-EE--cCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++ ++++.+.+    ++.+... ++  |..+  .+++.+.+.+... 
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV--ESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4689999986 8999999988888899 8999998 66554432    2234321 22  3332  1222222322211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|.+.|.
T Consensus        83 ~g~id~li~~Ag~   95 (261)
T 1gee_A           83 FGKLDVMINNAGL   95 (261)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             269999998873

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.09  E-value=0.0055  Score=50.48  Aligned_cols=135  Identities=13%  Similarity=0.103  Sum_probs=81.4

Q ss_pred             CEEEEEccCHHHHHHHHHHHHc--CCCeEE-EEcCCcchHHH-HHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           73 STVVIFGLGSIGLAVAEGARLC--GATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~--g~~~v~-~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      -+|.|+|+|.+|...+..++..  ++ +++ +.++++++.+. ++++|+ .++       .++.+.+.+   ..+|+|+.
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~~~~~~~~~-~~~-------~~~~~ll~~---~~~D~V~i   81 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRA-ELIDVCDIDPAALKAAVERTGA-RGH-------ASLTDMLAQ---TDADIVIL   81 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHHCC-EEE-------SCHHHHHHH---CCCSEEEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCe-EEEEEEcCCHHHHHHHHHHcCC-cee-------CCHHHHhcC---CCCCEEEE
Confidence            4789999999998877777665  66 655 55777777554 566786 343       334444443   27999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEecccCCCCceee-chHH-HHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFE-VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      |+......+.+..++..  |+-+++........... .... .-.++..+.-.+  ...+...++.+.+++.+|.+-
T Consensus        82 ~tp~~~h~~~~~~al~~--gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~k~~i~~g~iG  154 (354)
T 3q2i_A           82 TTPSGLHPTQSIECSEA--GFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVK--QNRRNATLQLLKRAMQEKRFG  154 (354)
T ss_dssp             CSCGGGHHHHHHHHHHT--TCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC--GGGGSHHHHHHHHHHHTTTTC
T ss_pred             CCCcHHHHHHHHHHHHC--CCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEE--cccCCHHHHHHHHHHhcCCCC
Confidence            99988777788888776  55555653221110000 0011 122344443221  223345688888889888653

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.07  E-value=0.0012  Score=52.18  Aligned_cols=78  Identities=19%  Similarity=0.265  Sum_probs=49.5

Q ss_pred             CCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce-EEcCCCCCCccHHHHHHHhcC--CCC
Q 025101           68 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGA  143 (258)
Q Consensus        68 ~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~~~  143 (258)
                      ...+|+++||+|+ |++|.++++.+...|+ +|+++++++++...    .+.. ..|-.+  .+++.+.+.+...  +++
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~----~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   82 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDVN----VSDHFKIDVTN--EEEVKEAVEKTTKKYGRI   82 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CTT----SSEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhccC----ceeEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            3457899999987 8999999998888999 89999988755411    1111 223333  1222222222221  279


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|++.|.
T Consensus        83 D~lv~nAg~   91 (269)
T 3vtz_A           83 DILVNNAGI   91 (269)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999998874

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.07  E-value=0.0012  Score=48.91  Aligned_cols=101  Identities=16%  Similarity=0.148  Sum_probs=68.0

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-ceEEcCCCCCCccHHHHHHHh
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      .....+.++++||.+|+|. |..+..+++.. . +|++++.+++..+.+++    .+. ..+ ....   .++.+.+...
T Consensus        26 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~---~d~~~~~~~~   98 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNV-TLME---GDAPEALCKI   98 (192)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEE---SCHHHHHTTS
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcce-EEEe---cCHHHhcccC
Confidence            3455678899999999976 88888888765 5 99999999988887765    443 211 1111   2333322211


Q ss_pred             cCCCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          139 TDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                        +.+|+|+.....   ...+..+.+.++++ |.++...
T Consensus        99 --~~~D~v~~~~~~~~~~~~l~~~~~~l~~g-G~l~~~~  134 (192)
T 1l3i_A           99 --PDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA  134 (192)
T ss_dssp             --CCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             --CCCCEEEECCchHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence              379999965431   34477888889999 9988654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.07  E-value=0.0014  Score=52.36  Aligned_cols=94  Identities=16%  Similarity=0.237  Sum_probs=65.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-----CC---------c--eEEcCCCCCCccHHH
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----GV---------T--EFVNSKNCGDKSVSQ  133 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-----g~---------~--~vi~~~~~~~~~~~~  133 (258)
                      .++.+||++|+|. |..+..+++. +..+|++++.+++..+.+++.     +.         .  .++.      .+..+
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~------~D~~~  145 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI------GDGFE  145 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE------SCHHH
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE------CchHH
Confidence            4578999999874 7777788877 766999999999988888763     21         1  1221      33444


Q ss_pred             HHHHhcCCCCCEEE-EecC---------ChhhHHHHHHhhhcCCceEEEec
Q 025101          134 IIIDMTDGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       134 ~i~~~~~~~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .+..  .+.||+|+ |...         ....+..+.+.|+|+ |.++...
T Consensus       146 ~l~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~~  193 (281)
T 1mjf_A          146 FIKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA  193 (281)
T ss_dssp             HHHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             Hhcc--cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            4444  34899998 4431         134478889999999 9988653

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.07  E-value=0.0073  Score=47.24  Aligned_cols=35  Identities=29%  Similarity=0.338  Sum_probs=30.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .+.+|+|+|+|++|..++..+...|..++.+++.+
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            36799999999999999999999999888888654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.07  E-value=0.007  Score=49.93  Aligned_cols=71  Identities=17%  Similarity=0.236  Sum_probs=52.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+.+...  ...|+||-++.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~--------~s~~e~~~~a--~~~DvVi~~vp   90 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAGA--------RSIEEFCAKL--VKPRVVWLMVP   90 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBCC--------SSHHHHHHHS--CSSCEEEECSC
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEEe--------CCHHHHHhcC--CCCCEEEEeCC
Confidence            4689999999999999998888998 99999999999888877765311        2233333321  13578887777


Q ss_pred             Ch
Q 025101          152 LA  153 (258)
Q Consensus       152 ~~  153 (258)
                      ..
T Consensus        91 ~~   92 (358)
T 4e21_A           91 AA   92 (358)
T ss_dssp             GG
T ss_pred             HH
Confidence            65

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.07  E-value=0.00071  Score=52.21  Aligned_cols=102  Identities=12%  Similarity=0.155  Sum_probs=67.6

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC--ce--EEcCCCCCCccHHHHHHHhcC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TE--FVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~--~~--vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      ....+.++++||-+|+|. |..+..+++..|..+|++++.+++..+.+++.-.  .+  ++..+.   .+... .... .
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~---~~~~~-~~~~-~  141 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQE-YANI-V  141 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGGG-GTTT-S
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC---CCccc-cccc-C
Confidence            344577899999999986 8888899988774499999999988877755221  11  221111   11000 0011 1


Q ss_pred             CCCCEEEEecCCh----hhHHHHHHhhhcCCceEEEe
Q 025101          141 GGADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       141 ~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~  173 (258)
                      +.+|+|+.....+    ..+..+.+.|+|+ |.+++.
T Consensus       142 ~~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  177 (230)
T 1fbn_A          142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA  177 (230)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ccEEEEEEecCChhHHHHHHHHHHHhCCCC-cEEEEE
Confidence            3799999655544    2377888899999 998875

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.07  E-value=0.0018  Score=52.70  Aligned_cols=79  Identities=19%  Similarity=0.197  Sum_probs=48.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC-----cchHHHH----HhcCCc-eE--EcCCCCCCccHHHHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-----SEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~-----~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~~i~~  137 (258)
                      +++++||+|+ |++|.++++.+...|+ +|++++++     .++.+.+    ++.+.. .+  .|..+  .+++.+.+.+
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd--~~~v~~~~~~   80 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQS--QVSVDRAIDQ   80 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHH
Confidence            3678999987 8999999999999999 89988765     2333332    233432 12  23333  1223333332


Q ss_pred             hcC--CCCCEEEEecCC
Q 025101          138 MTD--GGADYCFECVGL  152 (258)
Q Consensus       138 ~~~--~~~d~v~d~~g~  152 (258)
                      ...  +++|++|++.|.
T Consensus        81 ~~~~~g~iD~lVnnAG~   97 (324)
T 3u9l_A           81 IIGEDGRIDVLIHNAGH   97 (324)
T ss_dssp             HHHHHSCCSEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCc
Confidence            221  379999999883

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.07  E-value=0.0022  Score=49.83  Aligned_cols=79  Identities=24%  Similarity=0.327  Sum_probs=48.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhcCCce-EE--cCCCCCCccHHHHHHHhcC-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~-~~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~-  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++ .+++++.+.+    ++.+... ++  |..+  .+++.+.+.+... 
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKN--PEDVENMVKTAMDA   80 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTS--HHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHh
Confidence            4689999986 8999999998888999 89988 6666554432    2334322 22  3332  1222222222211 


Q ss_pred             -CCCCEEEEecCC
Q 025101          141 -GGADYCFECVGL  152 (258)
Q Consensus       141 -~~~d~v~d~~g~  152 (258)
                       +++|++|.+.|.
T Consensus        81 ~~~~d~vi~~Ag~   93 (247)
T 2hq1_A           81 FGRIDILVNNAGI   93 (247)
T ss_dssp             HSCCCEEEECC--
T ss_pred             cCCCCEEEECCCC
Confidence             279999998874

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.07  E-value=0.0024  Score=52.09  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=34.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEc-CCcchHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG  112 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~-~~~~~~~~~  112 (258)
                      .++++||+|+ |++|.++++.+...|+ +|++++ +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            4788999986 8999999999988999 899998 888766543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.06  E-value=0.0014  Score=52.00  Aligned_cols=99  Identities=11%  Similarity=0.064  Sum_probs=67.9

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhc-----CCce--EEcCCCCCCccHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRF-----GVTE--FVNSKNCGDKSVSQI  134 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~~-----g~~~--vi~~~~~~~~~~~~~  134 (258)
                      .....+.++++||-.|+| .|..+..+++..  +. +|++++.+++..+.+++.     |.+.  ++.. +     +.+ 
T Consensus       103 ~~~~~~~~~~~VLD~G~G-~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~-d-----~~~-  173 (275)
T 1yb2_A          103 IMRCGLRPGMDILEVGVG-SGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS-D-----IAD-  173 (275)
T ss_dssp             ---CCCCTTCEEEEECCT-TSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS-C-----TTT-
T ss_pred             HHHcCCCCcCEEEEecCC-CCHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC-c-----hhc-
Confidence            455678899999999987 477888888873  45 999999999888877652     5332  2222 1     111 


Q ss_pred             HHHhcCCCCCEEEEecCCh-hhHHHHHHhhhcCCceEEEec
Q 025101          135 IIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       135 i~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g  174 (258)
                        ...++.+|+|+-....+ ..+..+.+.++|+ |+++...
T Consensus       174 --~~~~~~fD~Vi~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  211 (275)
T 1yb2_A          174 --FISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYL  211 (275)
T ss_dssp             --CCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEE
T ss_pred             --cCcCCCccEEEEcCcCHHHHHHHHHHHcCCC-CEEEEEe
Confidence              11123799999755543 4588999999999 9988765

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.06  E-value=0.006  Score=50.75  Aligned_cols=131  Identities=15%  Similarity=0.097  Sum_probs=81.0

Q ss_pred             CEEEEEccCHHHHHHHHHHHH--------cCCCeEEEE-cCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCC
Q 025101           73 STVVIFGLGSIGLAVAEGARL--------CGATRIIGV-DVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~--------~g~~~v~~~-~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      =+|.|+|+|.+|..-+...+.        -++ +++++ ++++++.+ +++++|...++       .++.+.+.+   ..
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g~~~~y-------~d~~ell~~---~~   94 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERP-RLVHLAEANAGLAEARAGEFGFEKAT-------ADWRALIAD---PE   94 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCC-EEEEEECC--TTHHHHHHHHTCSEEE-------SCHHHHHHC---TT
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCc-EEEEEECCCHHHHHHHHHHhCCCeec-------CCHHHHhcC---CC
Confidence            378999999999764443322        145 56665 55666654 56779987665       344444432   27


Q ss_pred             CCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHH---H----HhcCceEEecccCCCCCCCcHHHHHH
Q 025101          143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE---V----LHSGKILMGSLFGGLKAKSDIPILLK  215 (258)
Q Consensus       143 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (258)
                      +|+|+-|+......+.+..+++.  |+-|++-..     +..+...   +    -.+++.+.-.+  +..+...++.+.+
T Consensus        95 iDaV~IatP~~~H~~~a~~al~a--GkhVl~EKP-----la~~~~ea~~l~~~a~~~g~~l~vg~--~~R~~p~~~~~k~  165 (393)
T 4fb5_A           95 VDVVSVTTPNQFHAEMAIAALEA--GKHVWCEKP-----MAPAYADAERMLATAERSGKVAALGY--NYIQNPVMRHIRK  165 (393)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHT--TCEEEECSC-----SCSSHHHHHHHHHHHHHSSSCEEECC--GGGGCHHHHHHHH
T ss_pred             CcEEEECCChHHHHHHHHHHHhc--CCeEEEccC-----CcccHHHHHHhhhhHHhcCCcccccc--ccccChHHHHHHH
Confidence            99999999988888899888886  666777633     2222221   1    22344333222  3334566888889


Q ss_pred             HHHcCCCC
Q 025101          216 RYMDKELE  223 (258)
Q Consensus       216 ~~~~g~~~  223 (258)
                      ++.+|.+-
T Consensus       166 ~i~~G~iG  173 (393)
T 4fb5_A          166 LVGDGVIG  173 (393)
T ss_dssp             HHHTTTTC
T ss_pred             HHHcCCCc
Confidence            99988654

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.05  E-value=0.0039  Score=52.40  Aligned_cols=96  Identities=15%  Similarity=0.129  Sum_probs=63.1

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCC--CeEEEEcCCcchHHHH-HhcC------Cce-EEcCCCCCCccHHHHHHHhcCCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGA--TRIIGVDVISEKFEIG-KRFG------VTE-FVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~--~~v~~~~~~~~~~~~~-~~~g------~~~-vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      .+|+|+|+|.+|..+++.+...|.  .+|++++++.++.+.+ ++++      +.. ..|..+  .+++.+.+.+.   +
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d--~~~l~~~l~~~---~   76 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS--IEELVALINEV---K   76 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTC--HHHHHHHHHHH---C
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCC--HHHHHHHHHhh---C
Confidence            378999999999999998887773  3899999999887654 3332      211 223332  12233333322   6


Q ss_pred             CCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          143 ADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       143 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +|+||+|+|.......+..++..+ -.++.++
T Consensus        77 ~DvVin~ag~~~~~~v~~a~l~~g-~~vvD~a  107 (405)
T 4ina_A           77 PQIVLNIALPYQDLTIMEACLRTG-VPYLDTA  107 (405)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHT-CCEEESS
T ss_pred             CCEEEECCCcccChHHHHHHHHhC-CCEEEec
Confidence            999999998755455666677776 6766553

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.05  E-value=0.0014  Score=52.20  Aligned_cols=41  Identities=22%  Similarity=0.257  Sum_probs=35.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  112 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~  112 (258)
                      +|+++||+|+ |++|..+++.+...|+ +|+++++++++.+.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKV   68 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4789999987 8999999998888899 899999998876544

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.05  E-value=0.0046  Score=50.73  Aligned_cols=135  Identities=18%  Similarity=0.275  Sum_probs=80.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHc-CCCeEEE-EcCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           74 TVVIFGLGSIGLAVAEGARLC-GATRIIG-VDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~-g~~~v~~-~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      +|.|+|+|.+|...+..++.. ++ ++++ .++++++.+ +++++|...++       .++.+.+.+   ..+|+|+.|+
T Consensus         4 rvgiIG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~---~~~D~V~i~t   72 (344)
T 3ezy_A            4 RIGVIGLGRIGTIHAENLKMIDDA-ILYAISDVREDRLREMKEKLGVEKAY-------KDPHELIED---PNVDAVLVCS   72 (344)
T ss_dssp             EEEEECCSHHHHHHHHHGGGSTTE-EEEEEECSCHHHHHHHHHHHTCSEEE-------SSHHHHHHC---TTCCEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHhCCCcee-------CCHHHHhcC---CCCCEEEEcC
Confidence            688999999998877666554 56 6664 577777755 45667865554       334443432   2799999999


Q ss_pred             CChhhHHHHHHhhhcCCceEEEecccCCCCceee-chHHH-HhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC
Q 025101          151 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFEV-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       151 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      ......+.+..++..  |+-+++........... ..... -.++..+.-..  ...+...++.+.+++.+|.+-
T Consensus        73 p~~~h~~~~~~al~~--gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~--~~R~~p~~~~~k~~i~~G~iG  143 (344)
T 3ezy_A           73 STNTHSELVIACAKA--KKHVFCEKPLSLNLADVDRMIEETKKADVILFTGF--NRRFDRNFKKLKEAVENGTIG  143 (344)
T ss_dssp             CGGGHHHHHHHHHHT--TCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEEC--GGGGCHHHHHHHHHHHTTTTS
T ss_pred             CCcchHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEee--cccCCHHHHHHHHHHHcCCCC
Confidence            988877778777776  55555653221110000 01111 22344433222  233346688888899988653

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.04  E-value=0.00093  Score=52.32  Aligned_cols=95  Identities=22%  Similarity=0.332  Sum_probs=57.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      +++||+|+ |++|..+++.+...|+ +|+++++++++.+.  .+.    .|..+   .+..+.+.+...+++|++|++.|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~--~~~----~Dl~~---~~~v~~~~~~~~~~id~lv~~Ag   71 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA--DLS----TAEGR---KQAIADVLAKCSKGMDGLVLCAG   71 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC--CTT----SHHHH---HHHHHHHHTTCTTCCSEEEECCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc--ccc----cCCCC---HHHHHHHHHHhCCCCCEEEECCC
Confidence            46899987 8999999998888999 89999988765321  000    11111   11122222222247899999887


Q ss_pred             Chh------------------hHHHHHHhhhcC-CceEEEecccC
Q 025101          152 LAS------------------LVQEAYACCRKG-WGKTIVLGVDQ  177 (258)
Q Consensus       152 ~~~------------------~~~~~~~~l~~~-~G~~v~~g~~~  177 (258)
                      ...                  ..+.++..+... .|+++.+++..
T Consensus        72 ~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           72 LGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             CCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             CCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence            422                  133344444332 27899887543

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.04  E-value=0.0017  Score=50.65  Aligned_cols=75  Identities=20%  Similarity=0.310  Sum_probs=49.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce-EEcCCCCCCccHHHHHHHhc--CCCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMT--DGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~--~~~~d~v  146 (258)
                      +++++||+|+ |++|.++++.+...|+ +|++++++++.    ++.++.. ..|..+  .+++.+.+.+..  -+++|++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~g~id~l   78 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPFATEVMDVAD--AAQVAQVCQRLLAETERLDAL   78 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSSEEEECCTTC--HHHHHHHHHHHHHHCSCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCceEEEcCCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4689999987 8999999999988999 99999988753    2234321 223333  122322233221  1379999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |++.|.
T Consensus        79 v~~Ag~   84 (250)
T 2fwm_X           79 VNAAGI   84 (250)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            998874

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.04  E-value=0.0023  Score=50.93  Aligned_cols=90  Identities=10%  Similarity=-0.030  Sum_probs=59.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC---ceEEcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV---TEFVNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~---~~vi~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      .+++++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+ ++++.   ..+.+..+     +       . .++|+|
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~-----l-------~-~~aDiI  191 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQ-----L-------K-QSYDVI  191 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG-----C-------C-SCEEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHH-----h-------c-CCCCEE
Confidence            688999999999999999888889977899999998886544 44442   12333222     1       1 279999


Q ss_pred             EEecCChhhHHH---HHHhhhcCCceEEEec
Q 025101          147 FECVGLASLVQE---AYACCRKGWGKTIVLG  174 (258)
Q Consensus       147 ~d~~g~~~~~~~---~~~~l~~~~G~~v~~g  174 (258)
                      |+|++....-+.   ....++++ ..++.+.
T Consensus       192 InaTp~gm~~~~~~l~~~~l~~~-~~V~Dlv  221 (281)
T 3o8q_A          192 INSTSASLDGELPAIDPVIFSSR-SVCYDMM  221 (281)
T ss_dssp             EECSCCCC----CSCCGGGEEEE-EEEEESC
T ss_pred             EEcCcCCCCCCCCCCCHHHhCcC-CEEEEec
Confidence            999976531111   12345555 5556554

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.03  E-value=0.0012  Score=52.00  Aligned_cols=71  Identities=15%  Similarity=0.089  Sum_probs=47.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--eEEcCCCCCCccHH----HHHHHhcCCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNCGDKSVS----QIIIDMTDGGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~----~~i~~~~~~~~  143 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.     ....  ...|-.+   ++-.    +.+.+.. |++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~-----~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~-G~i   79 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPEG-----LPEELFVEADLTT---KEGCAIVAEATRQRL-GGV   79 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCTT-----SCTTTEEECCTTS---HHHHHHHHHHHHHHT-SSC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchhC-----CCcEEEEEcCCCC---HHHHHHHHHHHHHHc-CCC
Confidence            6899999987 8999999999999999 999999875431     1111  1223333   3322    2333333 379


Q ss_pred             CEEEEecC
Q 025101          144 DYCFECVG  151 (258)
Q Consensus       144 d~v~d~~g  151 (258)
                      |+++++.|
T Consensus        80 DilVnnAG   87 (261)
T 4h15_A           80 DVIVHMLG   87 (261)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999876

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.03  E-value=0.0027  Score=49.26  Aligned_cols=72  Identities=15%  Similarity=-0.014  Sum_probs=48.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhcCCce-EEcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      .+.+|||+|+ |.+|..+++.+...  |+ +|+++++++++.+.+ ..++.. ..|..+   .   +.+.+... ++|+|
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~D~~d---~---~~~~~~~~-~~d~v   73 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADVFIGDITD---A---DSINPAFQ-GIDAL   73 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTEEECCTTS---H---HHHHHHHT-TCSEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeEEEecCCC---H---HHHHHHHc-CCCEE
Confidence            4678999986 99999999988888  78 999999987665433 112222 223332   2   23333332 59999


Q ss_pred             EEecC
Q 025101          147 FECVG  151 (258)
Q Consensus       147 ~d~~g  151 (258)
                      |.+.|
T Consensus        74 i~~a~   78 (253)
T 1xq6_A           74 VILTS   78 (253)
T ss_dssp             EECCC
T ss_pred             EEecc
Confidence            99876

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.03  E-value=0.0045  Score=48.29  Aligned_cols=39  Identities=26%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEE-cCCcchHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFE  110 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~-~~~~~~~~  110 (258)
                      +++++||+|+ +++|.++++.+...|+ +|+++ .++.++.+
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~   46 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAE   46 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHH
Confidence            5789999986 8999999999888999 88775 55555443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.02  E-value=0.0068  Score=48.39  Aligned_cols=75  Identities=16%  Similarity=0.241  Sum_probs=51.8

Q ss_pred             CCCCEEEEEc-cCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc----CCc-eEEcCCCCCCccHHHHHHHhcCCC
Q 025101           70 EVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF----GVT-EFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        70 ~~g~~vlI~G-~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~----g~~-~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      -+|+++||+| +|++|.+++..+...|+ +|+++++++++.+.+ +++    ++. ...|..+   .+   .+.+... .
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~---~~---~~~~~~~-~  188 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD---DA---SRAEAVK-G  188 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS---HH---HHHHHTT-T
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC---HH---HHHHHHH-h
Confidence            3678999999 69999999999998999 799999988776543 222    322 2234433   22   2333322 5


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++++++|.
T Consensus       189 ~DvlVn~ag~  198 (287)
T 1lu9_A          189 AHFVFTAGAI  198 (287)
T ss_dssp             CSEEEECCCT
T ss_pred             CCEEEECCCc
Confidence            8999999973

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.02  E-value=0.0017  Score=53.62  Aligned_cols=48  Identities=23%  Similarity=0.285  Sum_probs=40.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhcCCc
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVT  118 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~~~g~~  118 (258)
                      -+|++|+|+|.|.+|..+++.+...|+ +|++.+++.++.+ +++++|+.
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            478999999999999999999999999 8999998888766 45556653

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.01  E-value=0.0069  Score=48.58  Aligned_cols=87  Identities=16%  Similarity=0.301  Sum_probs=59.6

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|.. +.       .+..+.+.     ..|+||-|++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~~~-----~~D~vi~~vp~   70 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQGAQ-AC-------ENNQKVAA-----ASDIIFTSLPN   70 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTTTCE-EC-------SSHHHHHH-----HCSEEEECCSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe-ec-------CCHHHHHh-----CCCEEEEECCC
Confidence            579999999999998888888898 899999999888877766642 21       22333332     47899998876


Q ss_pred             hhhHHHHH-------HhhhcCCceEEEec
Q 025101          153 ASLVQEAY-------ACCRKGWGKTIVLG  174 (258)
Q Consensus       153 ~~~~~~~~-------~~l~~~~G~~v~~g  174 (258)
                      +..+...+       ..+.++ ..++.++
T Consensus        71 ~~~~~~v~~~~~~l~~~l~~~-~~vv~~~   98 (301)
T 3cky_A           71 AGIVETVMNGPGGVLSACKAG-TVIVDMS   98 (301)
T ss_dssp             HHHHHHHHHSTTCHHHHSCTT-CEEEECC
T ss_pred             HHHHHHHHcCcchHhhcCCCC-CEEEECC
Confidence            55454444       234454 5555443

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.01  E-value=0.0022  Score=50.52  Aligned_cols=74  Identities=19%  Similarity=0.220  Sum_probs=48.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce-EEcCCCCCCccHHHHHHHhcC--CCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~~~d~v  146 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++     ...+.. ..|..+  .+++.+.+.+...  +++|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g~iD~l   78 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----EAKYDHIECDVTN--PDQVKASIDHIFKEYGSISVL   78 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----SCSSEEEECCTTC--HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----CCceEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4689999987 8999999999988999 89999988765     111211 223333  1222222222211  269999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |++.|.
T Consensus        79 v~~Ag~   84 (264)
T 2dtx_A           79 VNNAGI   84 (264)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            998873

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.01  E-value=0.0027  Score=50.23  Aligned_cols=78  Identities=23%  Similarity=0.337  Sum_probs=50.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC--c-eE--EcCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--T-EF--VNSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~--~-~v--i~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++.  . .+  .|..+  .+++.+.+.+...  +
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   91 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK--DEDVRNLVDTTIAKHG   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            5789999987 8999999998888899 899999887765443 33432  1 12  23333  1222222222211  2


Q ss_pred             CCCEEEEecC
Q 025101          142 GADYCFECVG  151 (258)
Q Consensus       142 ~~d~v~d~~g  151 (258)
                      ++|++|++.|
T Consensus        92 ~id~li~~Ag  101 (278)
T 2bgk_A           92 KLDIMFGNVG  101 (278)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6999999887

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.01  E-value=0.0091  Score=42.71  Aligned_cols=94  Identities=5%  Similarity=0.020  Sum_probs=58.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHh---cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-EKFEIGKR---FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~~~~~~---~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      ..+++|.|+|.+|..+++.+...|. +|+++++++ ++.+.+++   .|.. ++.-+-    .-.+.+.+..-.++|.|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~-~i~gd~----~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNAD-VIPGDS----NDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCE-EEESCT----TSHHHHHHHTTTTCSEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCe-EEEcCC----CCHHHHHHcChhhCCEEE
Confidence            4678999999999999999998998 899999874 55544432   2443 332221    112233332112799999


Q ss_pred             EecCChhhHH----HHHHhhhcCCceEEEe
Q 025101          148 ECVGLASLVQ----EAYACCRKGWGKTIVL  173 (258)
Q Consensus       148 d~~g~~~~~~----~~~~~l~~~~G~~v~~  173 (258)
                      -++++.. .+    ...+.+.+. .+++..
T Consensus        77 ~~~~~d~-~n~~~~~~a~~~~~~-~~ii~~  104 (153)
T 1id1_A           77 ALSDNDA-DNAFVVLSAKDMSSD-VKTVLA  104 (153)
T ss_dssp             ECSSCHH-HHHHHHHHHHHHTSS-SCEEEE
T ss_pred             EecCChH-HHHHHHHHHHHHCCC-CEEEEE
Confidence            9998765 22    223334344 566543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.01  E-value=0.002  Score=49.40  Aligned_cols=97  Identities=21%  Similarity=0.221  Sum_probs=66.6

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cC-----Cc--eEEcCCCCCCccHHHHH
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FG-----VT--EFVNSKNCGDKSVSQII  135 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g-----~~--~vi~~~~~~~~~~~~~i  135 (258)
                      .++++++||.+|+|. |..+..+++..|. .+|++++.+++..+.+++    .|     ..  .++.. +     .....
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d-----~~~~~  146 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG-D-----GRMGY  146 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES-C-----GGGCC
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC-C-----cccCc
Confidence            377899999999985 8888888887763 289999999988877754    22     11  22221 1     11000


Q ss_pred             HHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          136 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                        ...+.||+|+........+..+.+.|+|+ |+++..-
T Consensus       147 --~~~~~fD~i~~~~~~~~~~~~~~~~Lkpg-G~lv~~~  182 (226)
T 1i1n_A          147 --AEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILPV  182 (226)
T ss_dssp             --GGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             --ccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEE
Confidence              01237999997666555578899999999 9987653

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.01  E-value=0.0036  Score=49.51  Aligned_cols=95  Identities=18%  Similarity=0.254  Sum_probs=64.0

Q ss_pred             hcchhhhhhhhhhhhhcCC-CCCCEEEEEccC-HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCC
Q 025101           51 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  128 (258)
Q Consensus        51 ~~~~~~~ta~~~l~~~~~~-~~g~~vlI~G~g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  128 (258)
                      .+||....++..| +...+ -.|++++|+|.| .+|..+++++...|+ .|++..+.                   .   
T Consensus       140 ~~PcTp~gv~~lL-~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~-------------------t---  195 (285)
T 3l07_A          140 LESCTPKGIMTML-REYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRF-------------------T---  195 (285)
T ss_dssp             CCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C---
T ss_pred             CCCCCHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC-------------------c---
Confidence            3444444444433 33333 479999999985 589999999999999 78776432                   1   


Q ss_pred             ccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          129 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       129 ~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      .++.+.++     .+|+||.++|.+..+  --+.++++ ..++.+|...
T Consensus       196 ~~L~~~~~-----~ADIVI~Avg~p~~I--~~~~vk~G-avVIDvgi~~  236 (285)
T 3l07_A          196 TDLKSHTT-----KADILIVAVGKPNFI--TADMVKEG-AVVIDVGINH  236 (285)
T ss_dssp             SSHHHHHT-----TCSEEEECCCCTTCB--CGGGSCTT-CEEEECCCEE
T ss_pred             hhHHHhcc-----cCCEEEECCCCCCCC--CHHHcCCC-cEEEEecccC
Confidence            23433332     599999999987633  33567888 8889888543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.00  E-value=0.0012  Score=54.10  Aligned_cols=97  Identities=20%  Similarity=0.260  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc------CC--c--eEEcCCCCCCccHHHHHHHh
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF------GV--T--EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~------g~--~--~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ..++.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.      |.  .  .++.      .+..+.+...
T Consensus       118 ~~~~~~VLdIG~G~-G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~------~D~~~~l~~~  190 (334)
T 1xj5_A          118 IPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI------GDGVAFLKNA  190 (334)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE------SCHHHHHHTS
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE------CCHHHHHHhc
Confidence            45678999999874 77788888876544999999999988887652      11  1  1221      3454444443


Q ss_pred             cCCCCCEEEE-ec---C------ChhhHHHHHHhhhcCCceEEEe
Q 025101          139 TDGGADYCFE-CV---G------LASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       139 ~~~~~d~v~d-~~---g------~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      ..+.||+|+- ..   +      ....+..+.+.|+++ |.++.-
T Consensus       191 ~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~  234 (334)
T 1xj5_A          191 AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQ  234 (334)
T ss_dssp             CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEE
T ss_pred             cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence            3347999984 32   1      234578899999999 999875

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.99  E-value=0.0023  Score=50.86  Aligned_cols=95  Identities=15%  Similarity=0.080  Sum_probs=61.3

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           74 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +|||+|+ |.+|..+++.+...  |+ +|+++++++++.+.+...++..+ .|..+   .   +.+.+... ++|+||.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~D~~d---~---~~l~~~~~-~~d~vi~~   73 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVEVRHGDYNQ---P---ESLQKAFA-GVSKLLFI   73 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCEEEECCTTC---H---HHHHHHTT-TCSEEEEC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCeEEEeccCC---H---HHHHHHHh-cCCEEEEc
Confidence            6899987 99999999888777  88 89999998877665555454322 23332   2   23344333 69999998


Q ss_pred             cCCh-------hhHHHHHHhhhcC-CceEEEeccc
Q 025101          150 VGLA-------SLVQEAYACCRKG-WGKTIVLGVD  176 (258)
Q Consensus       150 ~g~~-------~~~~~~~~~l~~~-~G~~v~~g~~  176 (258)
                      .+..       ......++.+... -++++.+++.
T Consensus        74 a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~  108 (287)
T 2jl1_A           74 SGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYA  108 (287)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred             CCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            8741       1223444444443 1478877754

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.99  E-value=0.0017  Score=50.98  Aligned_cols=94  Identities=14%  Similarity=0.058  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCC---------------------c-eEEcCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV---------------------T-EFVNSKN  125 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~---------------------~-~vi~~~~  125 (258)
                      ..++.+||..|+|. |..+..+++. |+ +|++++.|+...+.+++ .+.                     . .++..+-
T Consensus        66 ~~~~~~vLD~GCG~-G~~~~~La~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~  142 (252)
T 2gb4_A           66 GQSGLRVFFPLCGK-AIEMKWFADR-GH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI  142 (252)
T ss_dssp             TCCSCEEEETTCTT-CTHHHHHHHT-TC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred             CCCCCeEEEeCCCC-cHHHHHHHHC-CC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence            45788999999975 7788888875 98 99999999998888754 321                     1 1111111


Q ss_pred             CCCccHHHHHHHhcC-CCCCEEEEecCC--------hhhHHHHHHhhhcCCceEEEec
Q 025101          126 CGDKSVSQIIIDMTD-GGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       126 ~~~~~~~~~i~~~~~-~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                         .++     .... +.||+|++...-        ...+..+.+.|+|+ |+++++.
T Consensus       143 ---~~l-----~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG-G~l~l~~  191 (252)
T 2gb4_A          143 ---FDL-----PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE-FQYLVAV  191 (252)
T ss_dssp             ---TTG-----GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             ---ccC-----CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC-eEEEEEE
Confidence               111     1111 479999974321        12467888999999 9987554

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.99  E-value=0.011  Score=48.96  Aligned_cols=91  Identities=18%  Similarity=0.195  Sum_probs=63.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC----cch---------HHHHHhcCCceEEcCCCCCCccHHHHHHH
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI----SEK---------FEIGKRFGVTEFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~----~~~---------~~~~~~~g~~~vi~~~~~~~~~~~~~i~~  137 (258)
                      ++.+|+|+|+|..|..+++++...|.++|++++++    .+|         .+++++...    ....   .++.+.++ 
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~----~~~~---~~L~eav~-  262 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP----ERLS---GDLETALE-  262 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----TCCC---SCHHHHHT-
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc----cCch---hhHHHHHc-
Confidence            56799999999999999999999999899999988    544         333443221    0011   45665554 


Q ss_pred             hcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          138 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                          ++|++|-+++....-++.++.++++ -.++.+.
T Consensus       263 ----~ADVlIG~Sap~l~t~emVk~Ma~~-pIIfalS  294 (388)
T 1vl6_A          263 ----GADFFIGVSRGNILKPEWIKKMSRK-PVIFALA  294 (388)
T ss_dssp             ----TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECC
T ss_pred             ----cCCEEEEeCCCCccCHHHHHhcCCC-CEEEEcC
Confidence                4899998887433345677778776 6555554

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=96.99  E-value=0.004  Score=52.28  Aligned_cols=83  Identities=19%  Similarity=0.213  Sum_probs=54.0

Q ss_pred             hcCC-CCCCEEEEEcc-CHHHHHHHHHHHH-cCCCeEEEEcCCcchH----------------HHHHhcCCce-EE--cC
Q 025101           66 TANV-EVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKF----------------EIGKRFGVTE-FV--NS  123 (258)
Q Consensus        66 ~~~~-~~g~~vlI~G~-g~~G~~a~~l~~~-~g~~~v~~~~~~~~~~----------------~~~~~~g~~~-vi--~~  123 (258)
                      ..++ +.++++||+|+ +++|++.+..+.. .|+ +|++++++.+..                +.+++.|... .+  |-
T Consensus        54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dv  132 (422)
T 3s8m_A           54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDA  132 (422)
T ss_dssp             TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             ccccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecC
Confidence            3445 35788999987 7999998877777 899 899888765431                3445566432 22  33


Q ss_pred             CCCCCcc----HHHHHHHhcCCCCCEEEEecCC
Q 025101          124 KNCGDKS----VSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus       124 ~~~~~~~----~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      .+   ++    +.+.+.+..+|++|+++++.|.
T Consensus       133 td---~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          133 FS---DAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             TS---HHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             CC---HHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence            33   33    3334444443579999998875

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.99  E-value=0.0087  Score=48.75  Aligned_cols=133  Identities=17%  Similarity=0.194  Sum_probs=80.4

Q ss_pred             EEEEEccCHHHHHHHHHHHHc-CCCeEE-EEcCCcchHHH-HHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           74 TVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~-g~~~v~-~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      +|.|+|+|.+|...+..++.. ++ +++ +.++++++.+. ++++|+.  +       .++.+.+.+   ..+|+|+.|+
T Consensus         5 ~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~--~-------~~~~~~l~~---~~~D~V~i~t   71 (331)
T 4hkt_A            5 RFGLLGAGRIGKVHAKAVSGNADA-RLVAVADAFPAAAEAIAGAYGCE--V-------RTIDAIEAA---ADIDAVVICT   71 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCE--E-------CCHHHHHHC---TTCCEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCc-EEEEEECCCHHHHHHHHHHhCCC--c-------CCHHHHhcC---CCCCEEEEeC
Confidence            688999999999887777665 66 666 46777777554 4567764  2       234444432   2799999999


Q ss_pred             CChhhHHHHHHhhhcCCceEEEecccCCCCceee-chHHH-HhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC
Q 025101          151 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFEV-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       151 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      ......+.+..++..  |+-+++........... ..... -.++..+.-.+  ...+...++.+.+++.+|.+-
T Consensus        72 p~~~h~~~~~~al~~--gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~~~~i~~g~iG  142 (331)
T 4hkt_A           72 PTDTHADLIERFARA--GKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGF--NRRFDPHFMAVRKAIDDGRIG  142 (331)
T ss_dssp             CGGGHHHHHHHHHHT--TCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECC--GGGGCHHHHHHHHHHHTTTTC
T ss_pred             CchhHHHHHHHHHHc--CCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcc--cccCCHHHHHHHHHHHcCCCC
Confidence            988878888887776  55555653221110000 01111 22344443222  223345688888899988653

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=96.98  E-value=0.002  Score=50.46  Aligned_cols=100  Identities=12%  Similarity=0.086  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHH-hcCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID-MTDGGA  143 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~-~~~~~~  143 (258)
                      ..++.+||-+|+|+ |..++.+++..+..+|++++.+++..+++++    +|..++ ....   .+..+.... ...+.|
T Consensus        78 ~~~~~~vLDiG~G~-G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v-~~~~---~d~~~~~~~~~~~~~f  152 (249)
T 3g89_A           78 WQGPLRVLDLGTGA-GFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGA-RALW---GRAEVLAREAGHREAY  152 (249)
T ss_dssp             CCSSCEEEEETCTT-TTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSE-EEEE---CCHHHHTTSTTTTTCE
T ss_pred             cCCCCEEEEEcCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCce-EEEE---CcHHHhhcccccCCCc
Confidence            45788999999874 6677777777643399999999998887754    564322 1111   222221111 112379


Q ss_pred             CEEEEec-CC-hhhHHHHHHhhhcCCceEEEec
Q 025101          144 DYCFECV-GL-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       144 d~v~d~~-g~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      |+|+... .. ...++.+.+.++++ |+++.+-
T Consensus       153 D~I~s~a~~~~~~ll~~~~~~Lkpg-G~l~~~~  184 (249)
T 3g89_A          153 ARAVARAVAPLCVLSELLLPFLEVG-GAAVAMK  184 (249)
T ss_dssp             EEEEEESSCCHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             eEEEECCcCCHHHHHHHHHHHcCCC-eEEEEEe
Confidence            9999643 32 34467788899999 9988763

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.98  E-value=0.0044  Score=49.08  Aligned_cols=90  Identities=11%  Similarity=0.135  Sum_probs=61.6

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      ...+.+++|+|+|+.|.+++..+...|+.+|+++.|+.+|.+ ++++++.+ . +. +   ..         ...+|+||
T Consensus       116 ~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~-~~-~---~~---------~~~~DivI  180 (271)
T 1npy_A          116 LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-Y-IN-S---LE---------NQQADILV  180 (271)
T ss_dssp             CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-E-ES-C---CT---------TCCCSEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-c-ch-h---hh---------cccCCEEE
Confidence            346789999999999999998888899878999999988755 44556642 1 11 1   00         02699999


Q ss_pred             EecCChhh-------HHHHHHhhhcCCceEEEec
Q 025101          148 ECVGLASL-------VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       148 d~~g~~~~-------~~~~~~~l~~~~G~~v~~g  174 (258)
                      +|++....       .......+.++ ..++.+.
T Consensus       181 naTp~gm~~~~~~~~~~~~~~~l~~~-~~v~Dlv  213 (271)
T 1npy_A          181 NVTSIGMKGGKEEMDLAFPKAFIDNA-SVAFDVV  213 (271)
T ss_dssp             ECSSTTCTTSTTTTSCSSCHHHHHHC-SEEEECC
T ss_pred             ECCCCCccCccccCCCCCCHHHcCCC-CEEEEee
Confidence            99986431       11113456666 7677665

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.98  E-value=0.0062  Score=50.12  Aligned_cols=135  Identities=10%  Similarity=0.071  Sum_probs=80.3

Q ss_pred             CEEEEEccCHHHH-HHHHHHHHc-CCCeEE-EEcCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           73 STVVIFGLGSIGL-AVAEGARLC-GATRII-GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        73 ~~vlI~G~g~~G~-~a~~l~~~~-g~~~v~-~~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      -+|.|+|+|.+|. ..+..++.. ++ +++ +.++++++.+ +++++|+..+        .++.+.+.   ...+|+|+.
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~g~~~~--------~~~~~ll~---~~~~D~V~i   95 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLT-EVTAIASRRWDRAKRFTERFGGEPV--------EGYPALLE---RDDVDAVYV   95 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTE-EEEEEEESSHHHHHHHHHHHCSEEE--------ESHHHHHT---CTTCSEEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCe-EEEEEEcCCHHHHHHHHHHcCCCCc--------CCHHHHhc---CCCCCEEEE
Confidence            4789999999998 566666655 67 666 4567766655 4566887543        12333222   127999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEecccCCCCceee-chHH-HHhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFE-VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      |+......+.+..++..  |+-+++........... .... .-.+++.+.-.+  ...+...++.+-+++.+|.+-
T Consensus        96 ~tp~~~h~~~~~~al~a--Gk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~--~~R~~p~~~~~k~~i~~G~iG  168 (350)
T 3rc1_A           96 PLPAVLHAEWIDRALRA--GKHVLAEKPLTTDRPQAERLFAVARERGLLLMENF--MFLHHPQHRQVADMLDEGVIG  168 (350)
T ss_dssp             CCCGGGHHHHHHHHHHT--TCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEEC--GGGGCTHHHHHHHHHHTTTTC
T ss_pred             CCCcHHHHHHHHHHHHC--CCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEe--cccCCHHHHHHHHHHhcCCCC
Confidence            99988878888888876  55566653321110000 0011 123344443222  223346688888899988653

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.98  E-value=0.0032  Score=51.33  Aligned_cols=89  Identities=24%  Similarity=0.324  Sum_probs=62.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.++++++.+..+++|+..         .++.+.+.     ..|+|+-++
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~---------~~l~ell~-----~aDvV~l~~  208 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGLRQ---------VACSELFA-----SSDFILLAL  208 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTEEE---------CCHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCcee---------CCHHHHHh-----hCCEEEEcC
Confidence            47899999999999999999999999 9999999886666666677521         12333232     377888776


Q ss_pred             CCh-h---h-HHHHHHhhhcCCceEEEecc
Q 025101          151 GLA-S---L-VQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       151 g~~-~---~-~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ... .   . -...+..++++ ..++.++.
T Consensus       209 P~t~~t~~li~~~~l~~mk~g-ailIN~ar  237 (330)
T 4e5n_A          209 PLNADTLHLVNAELLALVRPG-ALLVNPCR  237 (330)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             CCCHHHHHHhCHHHHhhCCCC-cEEEECCC
Confidence            531 1   1 13566677777 77776663

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.97  E-value=0.0058  Score=49.89  Aligned_cols=88  Identities=20%  Similarity=0.255  Sum_probs=62.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|.|+|.|.+|..+++.++..|. +|++.+++.++.+.+.++|....    +     +.+.+.     ..|+|+.++
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~-----l~e~l~-----~aDvVi~~v  218 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQAEFV----S-----TPELAA-----QSDFIVVAC  218 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTCEEC----C-----HHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCceeC----C-----HHHHHh-----hCCEEEEeC
Confidence            47799999999999999999999999 89999988877766666665321    1     222232     489999888


Q ss_pred             CChh----hH-HHHHHhhhcCCceEEEec
Q 025101          151 GLAS----LV-QEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~~~----~~-~~~~~~l~~~~G~~v~~g  174 (258)
                      ....    .+ ...+..++++ ..++.++
T Consensus       219 p~~~~t~~~i~~~~~~~mk~g-ailIn~s  246 (330)
T 2gcg_A          219 SLTPATEGLCNKDFFQKMKET-AVFINIS  246 (330)
T ss_dssp             CCCTTTTTCBSHHHHHHSCTT-CEEEECS
T ss_pred             CCChHHHHhhCHHHHhcCCCC-cEEEECC
Confidence            6431    12 3456677776 7666555

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.96  E-value=0.0041  Score=49.21  Aligned_cols=95  Identities=19%  Similarity=0.196  Sum_probs=64.0

Q ss_pred             cchhhhhhhhhhhhhcCCCCCCEEEEEccC-HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc
Q 025101           52 LSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS  130 (258)
Q Consensus        52 ~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  130 (258)
                      +||....++..|.+....-.|++++|+|.| .+|..++.++...|+ .|++..+..                      .+
T Consensus       140 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t----------------------~~  196 (285)
T 3p2o_A          140 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKT----------------------KD  196 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC----------------------SC
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCc----------------------hh
Confidence            444433334333222223479999999975 589999999999999 788775321                      23


Q ss_pred             HHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          131 VSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       131 ~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      +.+.++     .+|+||.++|.+..+  --+.++++ ..++.+|...
T Consensus       197 L~~~~~-----~ADIVI~Avg~p~~I--~~~~vk~G-avVIDVgi~~  235 (285)
T 3p2o_A          197 LSLYTR-----QADLIIVAAGCVNLL--RSDMVKEG-VIVVDVGINR  235 (285)
T ss_dssp             HHHHHT-----TCSEEEECSSCTTCB--CGGGSCTT-EEEEECCCEE
T ss_pred             HHHHhh-----cCCEEEECCCCCCcC--CHHHcCCC-eEEEEeccCc
Confidence            333332     599999999987633  33567888 8889998653

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.96  E-value=0.0024  Score=50.76  Aligned_cols=79  Identities=19%  Similarity=0.303  Sum_probs=49.8

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCeEEEEcCCc--chHHHHHh-cCCceE--EcCCCCCCccHHHHHHHhc--C
Q 025101           71 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKR-FGVTEF--VNSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        71 ~g~~vlI~G~-g--~~G~~a~~l~~~~g~~~v~~~~~~~--~~~~~~~~-~g~~~v--i~~~~~~~~~~~~~i~~~~--~  140 (258)
                      +++++||+|+ |  ++|.++++.+...|+ +|++++++.  ++.+.+.+ .+...+  .|..+  .+++.+.+.+..  -
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVIS--DQEIKDLFVELGKVW  101 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCC--HHHHHHHHHHHHHHc
Confidence            5789999984 4  499999888888999 899999887  44444433 332222  23333  122222222221  1


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +.+|++|++.|.
T Consensus       102 g~id~li~nAg~  113 (280)
T 3nrc_A          102 DGLDAIVHSIAF  113 (280)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            379999998874

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.96  E-value=0.0017  Score=50.90  Aligned_cols=74  Identities=19%  Similarity=0.208  Sum_probs=48.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHHHHHHhc--CCCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMT--DGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~--~~~~d~v  146 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.     +. ...|..+  .+++.+.+.+..  -+.+|++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~~Dl~d--~~~v~~~~~~~~~~~g~iD~l   91 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEG-----FLAVKCDITD--TEQVEQAYKEIEETHGPVEVL   91 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT-----SEEEECCTTS--HHHHHHHHHHHHHHTCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhcc-----ceEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4689999987 8999999998888999 99999988765432     11 1123333  122222222221  1369999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |++.|.
T Consensus        92 v~nAg~   97 (253)
T 2nm0_A           92 IANAGV   97 (253)
T ss_dssp             EEECSC
T ss_pred             EECCCC
Confidence            998874

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.95  E-value=0.0015  Score=51.15  Aligned_cols=89  Identities=13%  Similarity=0.076  Sum_probs=57.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +| +++|+|+|++|.+++..+...|+++|+++.|+.++.+.+.+ ++.   ...     ++..+.+.     ++|+||+|
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~-----~~~~~~~~-----~aDiVIna  173 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSL-----DQLDEVVK-----KAKSLFNT  173 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEG-----GGHHHHHH-----TCSEEEEC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCH-----HHHHhhhc-----CCCEEEEC
Confidence            46 99999999999999999988998789999999877654432 321   222     22333222     69999998


Q ss_pred             cCChh---hHHHHHHhhhcCCceEEEec
Q 025101          150 VGLAS---LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       150 ~g~~~---~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ++...   ........++++ ..++.+.
T Consensus       174 tp~gm~p~~~~i~~~~l~~~-~~V~Div  200 (253)
T 3u62_A          174 TSVGMKGEELPVSDDSLKNL-SLVYDVI  200 (253)
T ss_dssp             SSTTTTSCCCSCCHHHHTTC-SEEEECS
T ss_pred             CCCCCCCCCCCCCHHHhCcC-CEEEEee
Confidence            86321   000112346666 6666654

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.95  E-value=0.0032  Score=49.35  Aligned_cols=41  Identities=15%  Similarity=0.049  Sum_probs=33.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHH---cCCCeEEEEcCCcchHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARL---CGATRIIGVDVISEKFEIG  112 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~---~g~~~v~~~~~~~~~~~~~  112 (258)
                      +++++||+|+ |++|.++++.+..   .|+ +|+++++++++.+.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~   49 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHH
Confidence            4678999986 8999998888776   799 999999998776543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.95  E-value=0.0057  Score=48.46  Aligned_cols=102  Identities=16%  Similarity=0.184  Sum_probs=65.6

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh----cCCce--EEcCCCCCCccHHHHHHH
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~~  137 (258)
                      ....+++|++||-.|+|+ |..+..+++.. |..+|++++.++++.+.+++    +|...  ++..      +..+....
T Consensus        77 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~------D~~~~~~~  149 (274)
T 3ajd_A           77 IVLNPREDDFILDMCAAP-GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINA------DMRKYKDY  149 (274)
T ss_dssp             HHHCCCTTCEEEETTCTT-CHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES------CHHHHHHH
T ss_pred             HHhCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeC------ChHhcchh
Confidence            345678899999888764 66666777754 43499999999998877654    46432  3322      22222111


Q ss_pred             h--cCCCCCEEE-E--ecCC---------------------hhhHHHHHHhhhcCCceEEEec
Q 025101          138 M--TDGGADYCF-E--CVGL---------------------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~--~~~~~d~v~-d--~~g~---------------------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .  ..+.||.|+ |  |+|.                     ...+..+++.++|+ |+++...
T Consensus       150 ~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~st  211 (274)
T 3ajd_A          150 LLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD-GELVYST  211 (274)
T ss_dssp             HHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEEE
Confidence            1  133799998 5  4432                     23477888899999 9988654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.95  E-value=0.0097  Score=47.37  Aligned_cols=41  Identities=20%  Similarity=0.444  Sum_probs=36.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  114 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~  114 (258)
                      ++|.|+|+|.+|...++.+...|+ +|++.++++++.+.+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~   45 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKK   45 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Confidence            589999999999999999999999 99999999988776654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.95  E-value=0.0043  Score=50.18  Aligned_cols=93  Identities=11%  Similarity=0.089  Sum_probs=64.6

Q ss_pred             CEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhc-CC---c--eEEcCCCCCCccHHHHHHHhcCCCCCE
Q 025101           73 STVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRF-GV---T--EFVNSKNCGDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~-g~---~--~vi~~~~~~~~~~~~~i~~~~~~~~d~  145 (258)
                      .+||++|+|. |..+..+++.. +. +|++++.+++-.+.+++. +.   .  .++.      .+..+.+.+..++.||+
T Consensus        91 ~rVLdIG~G~-G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~------~Da~~~l~~~~~~~fDv  162 (317)
T 3gjy_A           91 LRITHLGGGA-CTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPRAPRVKIRV------DDARMVAESFTPASRDV  162 (317)
T ss_dssp             CEEEEESCGG-GHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCCTTTEEEEE------SCHHHHHHTCCTTCEEE
T ss_pred             CEEEEEECCc-CHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccCCCceEEEE------CcHHHHHhhccCCCCCE
Confidence            3999999874 77888888865 66 899999999999988873 31   1  1221      34555555443448999


Q ss_pred             EEE-ecCC---------hhhHHHHHHhhhcCCceEEEec
Q 025101          146 CFE-CVGL---------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       146 v~d-~~g~---------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ||- ....         ...+..+.+.|+++ |.++...
T Consensus       163 Ii~D~~~~~~~~~~L~t~efl~~~~r~Lkpg-Gvlv~~~  200 (317)
T 3gjy_A          163 IIRDVFAGAITPQNFTTVEFFEHCHRGLAPG-GLYVANC  200 (317)
T ss_dssp             EEECCSTTSCCCGGGSBHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEEe
Confidence            984 3211         23478889999999 9887654

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.95  E-value=0.0042  Score=51.20  Aligned_cols=134  Identities=15%  Similarity=0.177  Sum_probs=80.9

Q ss_pred             CEEEEEccCHHHHHHHHHHHHc-CCCeEE-EEcCCcchHHH-HHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           73 STVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~-g~~~v~-~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -+|.|+|+|.+|...+..++.. ++ +++ +.++++++.+. ++++|+..   +     .++.+.+.+   ..+|+|+.|
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~lvav~d~~~~~~~~~~~~~g~~~---~-----~~~~~~l~~---~~~D~V~i~   73 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKL-KLVTCYSRTEDKREKFGKRYNCAG---D-----ATMEALLAR---EDVEMVIIT   73 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSE-EEEEEECSSHHHHHHHHHHHTCCC---C-----SSHHHHHHC---SSCCEEEEC
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHcCCCC---c-----CCHHHHhcC---CCCCEEEEe
Confidence            4789999999998877777765 66 655 45777776654 45677643   2     234443432   279999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEecccCCCCceee-chHH-HHhcCceEEecccCCCCCCCcHHHHHHHHHcCCC
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFE-VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  222 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  222 (258)
                      +......+.+..++..  |+-+++........... .... .-.++..+.-.+  ...+...++.+.+++.+|.+
T Consensus        74 tp~~~h~~~~~~al~~--gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~--~~R~~p~~~~~k~~i~~g~i  144 (354)
T 3db2_A           74 VPNDKHAEVIEQCARS--GKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGH--SSRRLGALRKMKEMIDTKEI  144 (354)
T ss_dssp             SCTTSHHHHHHHHHHT--TCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEEC--GGGGSHHHHHHHHHHHTTTT
T ss_pred             CChHHHHHHHHHHHHc--CCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEee--chhcCHHHHHHHHHHhcCCC
Confidence            9988778888888876  55555653221110000 0011 122344433222  23334668888889998865

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.94  E-value=0.0038  Score=50.36  Aligned_cols=98  Identities=16%  Similarity=0.057  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC---------Cc-eEEcCCCCCCccHHHHHHHh
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG---------VT-EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g---------~~-~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ..++.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.-         .. .++.      .+..+.+...
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~~~~~  165 (304)
T 3bwc_A           93 HPKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV------GDGLAFVRQT  165 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHSS
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE------CcHHHHHHhc
Confidence            35678999999874 777778887655449999999998888876632         11 1221      3344444322


Q ss_pred             cCCCCCEEEEecCC----------hhhHHHHHHhhhcCCceEEEec
Q 025101          139 TDGGADYCFECVGL----------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ~~~~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .++.||+|+-....          ...+..+.+.|+|+ |.++...
T Consensus       166 ~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  210 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD-GICCNQG  210 (304)
T ss_dssp             CTTCEEEEEEECC---------CCHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEec
Confidence            23479999843311          24478889999999 9998764

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.94  E-value=0.0041  Score=48.95  Aligned_cols=94  Identities=21%  Similarity=0.297  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHc---CCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHh
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLC---GATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~---g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~  138 (258)
                      +++|.+||-+|+|. |..+..+++..   |+ +|++++.+++..+.+++    .+..   .++..+          +.++
T Consensus        68 ~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D----------~~~~  135 (261)
T 4gek_A           68 VQPGTQVYDLGCSL-GAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD----------IRDI  135 (261)
T ss_dssp             CCTTCEEEEETCTT-THHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC----------TTTC
T ss_pred             CCCCCEEEEEeCCC-CHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEeecc----------cccc
Confidence            68999999999974 77888888864   56 89999999998887765    3322   122211          1122


Q ss_pred             cCCCCCEEEEecCC--------hhhHHHHHHhhhcCCceEEEecc
Q 025101          139 TDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       139 ~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ..+.+|+|+-...-        ...+..+.+.|+|+ |.+++.-.
T Consensus       136 ~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG-G~lii~e~  179 (261)
T 4gek_A          136 AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG-GALVLSEK  179 (261)
T ss_dssp             CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cccccccceeeeeeeecCchhHhHHHHHHHHHcCCC-cEEEEEec
Confidence            22368888754321        12478899999999 99987643

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.93  E-value=0.002  Score=51.04  Aligned_cols=76  Identities=14%  Similarity=0.174  Sum_probs=50.9

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCC--c-eE--EcCCCCCCccHHH-HHHHhcC--CC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV--T-EF--VNSKNCGDKSVSQ-IIIDMTD--GG  142 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~--~-~v--i~~~~~~~~~~~~-~i~~~~~--~~  142 (258)
                      +++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++..  . ..  .|..+   .+-.+ .+.+...  +.
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~~g~   97 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAKTRVLPLTLDVRD---RAAMSAAVDNLPEEFAT   97 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC---HHHHHHHHHTCCGGGSS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCC---HHHHHHHHHHHHHHhCC
Confidence            78999986 8999999998888999 9999999987766543 3321  1 12  23333   33333 3333222  26


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|++.|.
T Consensus        98 iD~lvnnAG~  107 (272)
T 2nwq_A           98 LRGLINNAGL  107 (272)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999998873

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.93  E-value=0.002  Score=50.87  Aligned_cols=78  Identities=22%  Similarity=0.267  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCce-E--EcCCCCCCcc-HHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVTE-F--VNSKNCGDKS-VSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~-v--i~~~~~~~~~-~~~~i~~~~~  140 (258)
                      +++++||+|+ |++|..+++.+...|+ +|+++++ ++++.+.+    ++.+... +  .|..+   .+ +.+.+.+...
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~   95 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK---PSEVVALFDKAVS   95 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS---HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCC---HHHHHHHHHHHHH
Confidence            4789999986 8999999998888899 8999988 65554432    3335432 2  23333   33 2222322211


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|++|.+.|.
T Consensus        96 ~~~~~d~vi~~Ag~  109 (274)
T 1ja9_A           96 HFGGLDFVMSNSGM  109 (274)
T ss_dssp             HHSCEEEEECCCCC
T ss_pred             HcCCCCEEEECCCC
Confidence              269999998873

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.92  E-value=0.0036  Score=48.68  Aligned_cols=81  Identities=23%  Similarity=0.269  Sum_probs=48.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHH----HHhcCCceEEcCCCCCCcc-HHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVTEFVNSKNCGDKS-VSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~----~~~~g~~~vi~~~~~~~~~-~~~~i~~~~~--~  141 (258)
                      .++++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.    +++.|....+-.-+.++.+ +...+.+...  +
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   81 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG   81 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4678999986 8999999998888999 8888766 4344433    2334543221111211132 2222222211  2


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|+++++.|.
T Consensus        82 ~id~lv~nAg~   92 (246)
T 3osu_A           82 SLDVLVNNAGI   92 (246)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.92  E-value=0.0057  Score=48.89  Aligned_cols=97  Identities=13%  Similarity=0.124  Sum_probs=67.1

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHhcC
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      .+.++.+||-+|+| .|..+..+++..|. +|++++.+++..+.+++    .|..   .++..+-   .++     ...+
T Consensus        79 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~-----~~~~  148 (297)
T 2o57_A           79 VLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEI-----PCED  148 (297)
T ss_dssp             CCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSC-----SSCT
T ss_pred             CCCCCCEEEEeCCC-CCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc---ccC-----CCCC
Confidence            77889999999997 48888888887788 99999999988777654    3321   2222211   111     1112


Q ss_pred             CCCCEEEEecCC------hhhHHHHHHhhhcCCceEEEecc
Q 025101          141 GGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       141 ~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      +.+|+|+....-      ...+..+.+.|+|+ |++++...
T Consensus       149 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  188 (297)
T 2o57_A          149 NSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP  188 (297)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCEeEEEecchhhhcCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence            379999864332      34588999999999 99987753

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.92  E-value=0.005  Score=48.44  Aligned_cols=93  Identities=11%  Similarity=0.084  Sum_probs=65.2

Q ss_pred             cchhhhhhhhhhhhhcCCCCCCEEEEEccC-HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc
Q 025101           52 LSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS  130 (258)
Q Consensus        52 ~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  130 (258)
                      +||.....+..| +..+ -.|++++|+|.| .+|..+++++...|+ .|++..+.                   .   .+
T Consensus       132 ~PcTp~gv~~lL-~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~-------------------t---~~  186 (276)
T 3ngx_A          132 VPATPRAVIDIM-DYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSK-------------------T---KD  186 (276)
T ss_dssp             CCHHHHHHHHHH-HHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C---SC
T ss_pred             CCCcHHHHHHHH-HHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCC-------------------c---cc
Confidence            454444444433 3334 689999999985 689999999999999 88877532                   1   34


Q ss_pred             HHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          131 VSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       131 ~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      +.+.++     .+|+||.++|.+..+.  -+.++++ ..++.+|...
T Consensus       187 L~~~~~-----~ADIVI~Avg~p~~I~--~~~vk~G-avVIDvgi~~  225 (276)
T 3ngx_A          187 IGSMTR-----SSKIVVVAVGRPGFLN--REMVTPG-SVVIDVGINY  225 (276)
T ss_dssp             HHHHHH-----HSSEEEECSSCTTCBC--GGGCCTT-CEEEECCCEE
T ss_pred             HHHhhc-----cCCEEEECCCCCcccc--HhhccCC-cEEEEeccCc
Confidence            554454     4899999999876333  3457888 8889888653

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.92  E-value=0.0036  Score=49.30  Aligned_cols=77  Identities=14%  Similarity=0.219  Sum_probs=49.3

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHHH-hcCCceEE--cCCCCCCcc-HHHHHHHhcC
Q 025101           71 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIGK-RFGVTEFV--NSKNCGDKS-VSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~~~---~~~~~~-~~g~~~vi--~~~~~~~~~-~~~~i~~~~~  140 (258)
                      +++++||+|+   |++|.++++.+...|+ +|++++++++   ..+.+. +.+...++  |..+   .+ +.+.+.+...
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~   83 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE---DASIDTMFAELGK   83 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC---HHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCC---HHHHHHHHHHHHH
Confidence            4788999974   6999999998888999 8999998872   222222 23422232  3333   33 3333333322


Q ss_pred             C--CCCEEEEecC
Q 025101          141 G--GADYCFECVG  151 (258)
Q Consensus       141 ~--~~d~v~d~~g  151 (258)
                      .  ++|++|++.|
T Consensus        84 ~~g~iD~lv~~Ag   96 (265)
T 1qsg_A           84 VWPKFDGFVHSIG   96 (265)
T ss_dssp             TCSSEEEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            2  7999999887

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=96.91  E-value=0.0042  Score=49.73  Aligned_cols=44  Identities=23%  Similarity=0.300  Sum_probs=36.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  114 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~  114 (258)
                      .++.+||-+|+|. |..++.+++..+..+|++++.++...+.+++
T Consensus        45 ~~~~~VLDiGCG~-G~~~~~la~~~~~~~v~gvDis~~~i~~A~~   88 (292)
T 3g07_A           45 FRGRDVLDLGCNV-GHLTLSIACKWGPSRMVGLDIDSRLIHSARQ   88 (292)
T ss_dssp             TTTSEEEEESCTT-CHHHHHHHHHTCCSEEEEEESCHHHHHHHHH
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            3688999999974 8888999998765599999999988887765

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.90  E-value=0.0025  Score=50.26  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=51.8

Q ss_pred             CCCCCEEEEEc-c--CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCceE--EcCCCCCCcc-HHHHHHHh
Q 025101           69 VEVGSTVVIFG-L--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF--VNSKNCGDKS-VSQIIIDM  138 (258)
Q Consensus        69 ~~~g~~vlI~G-~--g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v--i~~~~~~~~~-~~~~i~~~  138 (258)
                      ..+++++||+| +  +++|..+++.+...|+ +|++++++++..+.++    +.+...+  .|..+   .+ +...+.+.
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~   86 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVAD---DAQIDALFASL   86 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC---HHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCC---HHHHHHHHHHH
Confidence            45689999997 4  6999999998888999 9999988865544443    3342222  23333   33 22222222


Q ss_pred             c--CCCCCEEEEecCC
Q 025101          139 T--DGGADYCFECVGL  152 (258)
Q Consensus       139 ~--~~~~d~v~d~~g~  152 (258)
                      .  -+++|++|++.|.
T Consensus        87 ~~~~g~id~lv~nAg~  102 (271)
T 3ek2_A           87 KTHWDSLDGLVHSIGF  102 (271)
T ss_dssp             HHHCSCEEEEEECCCC
T ss_pred             HHHcCCCCEEEECCcc
Confidence            1  1379999998873

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=96.90  E-value=0.0075  Score=49.44  Aligned_cols=134  Identities=14%  Similarity=0.089  Sum_probs=79.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHHc-CCCeEE-EEcCCcchHHH-HHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEE
Q 025101           73 STVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFE  148 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~-g~~~v~-~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d  148 (258)
                      -+|.|+|+|.+|...+..++.. ++ +++ +.++++++.+. ++++|+ .++       .++.    ++... .+|+|+.
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~g~-~~~-------~~~~----~~l~~~~~D~V~i   71 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDL-ELVVIADPFIEGAQRLAEANGA-EAV-------ASPD----EVFARDDIDGIVI   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHTTTC-EEE-------SSHH----HHTTCSCCCEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHcCC-cee-------CCHH----HHhcCCCCCEEEE
Confidence            3789999999999888777765 66 666 46777777554 566774 333       2233    23233 7999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEecccCCCCceee-chHHH-HhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFEV-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      |+......+.+..++..+  +-+++........... ..... -.++..+.-.+  ...+...++.+.+++.+|.+-
T Consensus        72 ~tp~~~h~~~~~~al~~g--k~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~k~~i~~g~iG  144 (344)
T 3euw_A           72 GSPTSTHVDLITRAVERG--IPALCEKPIDLDIEMVRACKEKIGDGASKVMLGF--NRRFDPSFAAINARVANQEIG  144 (344)
T ss_dssp             CSCGGGHHHHHHHHHHTT--CCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECC--GGGGCHHHHHHHHHHHTTTTS
T ss_pred             eCCchhhHHHHHHHHHcC--CcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecc--hhhcCHHHHHHHHHHhcCCCC
Confidence            999888788888887764  4455543211110000 00111 12233332221  233345688888899988653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.90  E-value=0.0038  Score=48.86  Aligned_cols=101  Identities=20%  Similarity=0.299  Sum_probs=67.4

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc--eEEcCCCCCCccHHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~  136 (258)
                      +.......++.+||-+|+| .|..+..+++. +. +|++++.+++..+.+++    .|..  .++..+-   .++     
T Consensus        29 l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~l-----   97 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQM-----   97 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CC-----
T ss_pred             HHHHhCCCCCCEEEEEeCC-CCHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH---HhC-----
Confidence            3445567789999999997 47777777775 44 89999999988877755    2322  2222111   111     


Q ss_pred             HhcCCCCCEEEEecCC------hhhHHHHHHhhhcCCceEEEecc
Q 025101          137 DMTDGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ...++.||+|+....-      ...+..+.+.|+|+ |.++....
T Consensus        98 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~~~~~  141 (260)
T 1vl5_A           98 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVDN  141 (260)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC-CEEEEEEc
Confidence            1112379999976432      34588999999999 99987643

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.90  E-value=0.0057  Score=50.08  Aligned_cols=90  Identities=11%  Similarity=0.105  Sum_probs=62.5

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      .+|.|+|.|.+|...+..++..|. +|++.++++++.+.++++|+...        .+..+.+.+. ..+.|+||-|+..
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~~--------~~~~e~~~~a-~~~aDlVilavP~   78 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDVS--------ADLEATLQRA-AAEDALIVLAVPM   78 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCEE--------SCHHHHHHHH-HHTTCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeee--------CCHHHHHHhc-ccCCCEEEEeCCH
Confidence            579999999999999999998998 89999999999999989987422        2233333321 0157899998885


Q ss_pred             hhhHHHHHHh---hhcCCceEEEec
Q 025101          153 ASLVQEAYAC---CRKGWGKTIVLG  174 (258)
Q Consensus       153 ~~~~~~~~~~---l~~~~G~~v~~g  174 (258)
                      .. +...+..   ++++ ..++.++
T Consensus        79 ~~-~~~vl~~l~~~~~~-~iv~Dv~  101 (341)
T 3ktd_A           79 TA-IDSLLDAVHTHAPN-NGFTDVV  101 (341)
T ss_dssp             HH-HHHHHHHHHHHCTT-CCEEECC
T ss_pred             HH-HHHHHHHHHccCCC-CEEEEcC
Confidence            43 3333322   2444 5555555

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.90  E-value=0.0058  Score=48.35  Aligned_cols=94  Identities=17%  Similarity=0.248  Sum_probs=64.5

Q ss_pred             cchhhhhhhhhhhhhcCC-CCCCEEEEEccC-HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCc
Q 025101           52 LSCGVSTGVGAAWRTANV-EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  129 (258)
Q Consensus        52 ~~~~~~ta~~~l~~~~~~-~~g~~vlI~G~g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~  129 (258)
                      +||.....+..| +...+ -.|++++|+|.| .+|..+++++...|+ .|++..+..                      .
T Consensus       141 ~PcTp~gv~~lL-~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T----------------------~  196 (286)
T 4a5o_A          141 RPCTPKGIMTLL-ASTGADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFT----------------------R  196 (286)
T ss_dssp             CCHHHHHHHHHH-HHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTC----------------------S
T ss_pred             CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCC----------------------c
Confidence            444434344433 33333 479999999975 689999999999999 788765321                      2


Q ss_pred             cHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          130 SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       130 ~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      ++.+.++     .+|+||.++|.+..+  --+.++++ ..++.+|...
T Consensus       197 ~L~~~~~-----~ADIVI~Avg~p~~I--~~~~vk~G-avVIDvgi~~  236 (286)
T 4a5o_A          197 DLADHVS-----RADLVVVAAGKPGLV--KGEWIKEG-AIVIDVGINR  236 (286)
T ss_dssp             CHHHHHH-----TCSEEEECCCCTTCB--CGGGSCTT-CEEEECCSCS
T ss_pred             CHHHHhc-----cCCEEEECCCCCCCC--CHHHcCCC-eEEEEecccc
Confidence            3444443     599999999987633  33567888 8999998654

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.89  E-value=0.0059  Score=50.11  Aligned_cols=89  Identities=22%  Similarity=0.316  Sum_probs=60.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.+++.++. ..+++|+..+        .++.+.+.     ..|+|+-++
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~~--------~~l~ell~-----~aDvV~l~~  231 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRV--------STLQDLLF-----HSDCVTLHC  231 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEEC--------SSHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcchh-hHhhcCCeec--------CCHHHHHh-----cCCEEEEcC
Confidence            57899999999999999999999999 899998876543 3455665321        12333232     478888876


Q ss_pred             CCh-h---hH-HHHHHhhhcCCceEEEecc
Q 025101          151 GLA-S---LV-QEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       151 g~~-~---~~-~~~~~~l~~~~G~~v~~g~  175 (258)
                      ... .   .+ ...+..++++ ..++.++.
T Consensus       232 P~t~~t~~li~~~~l~~mk~g-ailIN~ar  260 (347)
T 1mx3_A          232 GLNEHNHHLINDFTVKQMRQG-AFLVNTAR  260 (347)
T ss_dssp             CCCTTCTTSBSHHHHTTSCTT-EEEEECSC
T ss_pred             CCCHHHHHHhHHHHHhcCCCC-CEEEECCC
Confidence            542 1   12 4556677777 77776663

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.89  E-value=0.0064  Score=51.83  Aligned_cols=93  Identities=8%  Similarity=0.022  Sum_probs=57.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceE--EcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF--VNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v--i~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      +.+|+|+|+|.+|..+++.+...|. +|+++++++++.+.+. +++....  .|..+   .   +.+.+... ++|+|++
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d---~---~~l~~~l~-~~DvVIn   74 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVND---D---AALDAEVA-KHDLVIS   74 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTTC---H---HHHHHHHT-TSSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecCC---H---HHHHHHHc-CCcEEEE
Confidence            5789999999999999888888898 8999999887765543 2432112  23322   1   12222222 6999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEe
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      |++..........++.++ ..++..
T Consensus        75 ~a~~~~~~~i~~a~l~~g-~~vvd~   98 (450)
T 1ff9_A           75 LIPYTFHATVIKSAIRQK-KHVVTT   98 (450)
T ss_dssp             CCC--CHHHHHHHHHHHT-CEEEES
T ss_pred             CCccccchHHHHHHHhCC-CeEEEe
Confidence            998643233344555654 454433

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.89  E-value=0.0076  Score=52.23  Aligned_cols=79  Identities=19%  Similarity=0.229  Sum_probs=52.1

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch---H----HHHHhcCCceE---EcCCCCCCccHHHHHHH
Q 025101           69 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK---F----EIGKRFGVTEF---VNSKNCGDKSVSQIIID  137 (258)
Q Consensus        69 ~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~---~----~~~~~~g~~~v---i~~~~~~~~~~~~~i~~  137 (258)
                      +++++++||+|+ |++|..+++.+...|+.+|+.+.++...   .    +.+++.|....   .|..+   .+-.+.+.+
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd---~~~v~~~~~  332 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAE---RDALAALVT  332 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSC---HHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCC---HHHHHHHHh
Confidence            467899999986 9999999888888898668888887632   1    22344564322   23333   333333322


Q ss_pred             hcCCCCCEEEEecCC
Q 025101          138 MTDGGADYCFECVGL  152 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~  152 (258)
                      .  +.+|.||.+.|.
T Consensus       333 ~--~~ld~VVh~AGv  345 (511)
T 2z5l_A          333 A--YPPNAVFHTAGI  345 (511)
T ss_dssp             H--SCCSEEEECCCC
T ss_pred             c--CCCcEEEECCcc
Confidence            2  479999998874

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=96.89  E-value=0.006  Score=49.73  Aligned_cols=136  Identities=15%  Similarity=0.068  Sum_probs=80.6

Q ss_pred             CEEEEEccCHHHHHHHHHHHHc-CCCeEEE-EcCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           73 STVVIFGLGSIGLAVAEGARLC-GATRIIG-VDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~-~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -+|.|+|+|.+|...+..++.. ++ ++++ .++++++.+ +++++|...++       .++.+.+.+   ..+|+|+.|
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~---~~~D~V~i~   74 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQA-EVRGIASRRLENAQKMAKELAIPVAY-------GSYEELCKD---ETIDIIYIP   74 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSE-EEEEEBCSSSHHHHHHHHHTTCCCCB-------SSHHHHHHC---TTCSEEEEC
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCc-EEEEEEeCCHHHHHHHHHHcCCCcee-------CCHHHHhcC---CCCCEEEEc
Confidence            3788999999998887777765 56 6664 466666654 45667764332       234443332   279999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEecccCCCCceee-chHHH-HhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFEV-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      +......+.+..++..+  +-+++........... ..... -.+++.+.-..  ...+...++.+.+++.+|.+-
T Consensus        75 tp~~~h~~~~~~al~~g--k~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~k~~i~~g~iG  146 (330)
T 3e9m_A           75 TYNQGHYSAAKLALSQG--KPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQ--KSVFLPITQKVKATIQEGGLG  146 (330)
T ss_dssp             CCGGGHHHHHHHHHHTT--CCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECC--SGGGCHHHHHHHHHHHTTTTC
T ss_pred             CCCHHHHHHHHHHHHCC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEE--hhhhCHHHHHHHHHHhCCCCC
Confidence            99888788888888764  4455543211110000 00111 22344433222  223345688888899988653

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.89  E-value=0.0037  Score=50.75  Aligned_cols=77  Identities=23%  Similarity=0.233  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC---------CcchHHH----HHhcCCceEEcCCCCCCccH---HH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV---------ISEKFEI----GKRFGVTEFVNSKNCGDKSV---SQ  133 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~---------~~~~~~~----~~~~g~~~vi~~~~~~~~~~---~~  133 (258)
                      .|+++||+|+ |++|..+++.+...|+ +|+++++         +.++.+.    +++.+...+.|..+  .+++   .+
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~--~~~~~~~~~   84 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS--VEAGEKLVK   84 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC--GGGHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCC--HHHHHHHHH
Confidence            5789999987 8999999998888999 8998754         4444432    23344434556554  1222   23


Q ss_pred             HHHHhcCCCCCEEEEecC
Q 025101          134 IIIDMTDGGADYCFECVG  151 (258)
Q Consensus       134 ~i~~~~~~~~d~v~d~~g  151 (258)
                      .+.+.. +++|++|++.|
T Consensus        85 ~~~~~~-g~iD~lVnnAG  101 (319)
T 1gz6_A           85 TALDTF-GRIDVVVNNAG  101 (319)
T ss_dssp             HHHHHT-SCCCEEEECCC
T ss_pred             HHHHHc-CCCCEEEECCC
Confidence            333332 37999999887

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=96.89  E-value=0.0091  Score=45.59  Aligned_cols=98  Identities=12%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc-CCCCCE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT-DGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~-~~~~d~  145 (258)
                      ++..||-+|+|. |..++.+++...-.+|++++.+++..+.+++    .|..++ ....   .+..+.+.... .+.+|.
T Consensus        34 ~~~~vLDiGcG~-G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv-~~~~---~Da~~~l~~~~~~~~~d~  108 (218)
T 3dxy_A           34 EAPVTLEIGFGM-GASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNL-RVMC---HDAVEVLHKMIPDNSLRM  108 (218)
T ss_dssp             CCCEEEEESCTT-CHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSE-EEEC---SCHHHHHHHHSCTTCEEE
T ss_pred             CCCeEEEEeeeC-hHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcE-EEEE---CCHHHHHHHHcCCCChhe
Confidence            678899999874 8888888887643389999999988776543    454332 1111   34444444433 337898


Q ss_pred             EEEecCCh--------------hhHHHHHHhhhcCCceEEEec
Q 025101          146 CFECVGLA--------------SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       146 v~d~~g~~--------------~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      |+-....+              ..+..+.+.|+|+ |.+++..
T Consensus       109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpG-G~l~i~t  150 (218)
T 3dxy_A          109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLG-GVFHMAT  150 (218)
T ss_dssp             EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCC-cEEEEEe
Confidence            88653322              2588899999999 9987654

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.89  E-value=0.0029  Score=49.58  Aligned_cols=78  Identities=22%  Similarity=0.323  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHh----cCCce-E--EcCCCCCCcc-HHHHHHHhc-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKR----FGVTE-F--VNSKNCGDKS-VSQIIIDMT-  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~~----~g~~~-v--i~~~~~~~~~-~~~~i~~~~-  139 (258)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+ .+++    .+... +  .|..+   .+ +.+.+.+.. 
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~---~~~~~~~~~~~~~   88 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN---TDIVTKTIQQIDA   88 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCC---HHHHHHHHHHHHH
Confidence            4678999987 8999999998888899 9999998655432 2222    24321 2  23333   33 222233221 


Q ss_pred             -CCCCCEEEEecCC
Q 025101          140 -DGGADYCFECVGL  152 (258)
Q Consensus       140 -~~~~d~v~d~~g~  152 (258)
                       -+.+|++|.+.|.
T Consensus        89 ~~~~id~li~~Ag~  102 (265)
T 1h5q_A           89 DLGPISGLIANAGV  102 (265)
T ss_dssp             HSCSEEEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence             1369999998874

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.89  E-value=0.0034  Score=49.59  Aligned_cols=80  Identities=19%  Similarity=0.147  Sum_probs=50.0

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhcCCce-EE--cCCCCCCccHHHHHHHhcC
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~-~~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~  140 (258)
                      .+++++||+|+ |++|.++++.+...|+ +|+++ .+++++.+.+    ++.+... ++  |..+  .+++.+.+.+...
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  100 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGN--AADIAAMFSAVDR  100 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHH
Confidence            45789999987 8999999999988999 88776 6666655443    2334322 22  3332  1222222222211


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|++|.+.|.
T Consensus       101 ~~g~id~li~nAg~  114 (272)
T 4e3z_A          101 QFGRLDGLVNNAGI  114 (272)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             hCCCCCEEEECCCC
Confidence              279999998873

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.88  E-value=0.0032  Score=48.73  Aligned_cols=78  Identities=18%  Similarity=0.224  Sum_probs=49.0

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhcCCce-E--EcCCCCCCccHHHHHHHhc--C
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~-~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~--~  140 (258)
                      |+++||+|+ |++|..+++.+...|+ +|+++ .+++++.+.+    ++.+... +  .|..+  .+++.+.+.+..  -
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK--EADVEAMMKTAIDAW   77 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS--HHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCC--HHHHHHHHHHHHHHc
Confidence            568999986 8999999999988999 88884 7877665433    2234321 2  23332  122222222221  1


Q ss_pred             CCCCEEEEecCC
Q 025101          141 GGADYCFECVGL  152 (258)
Q Consensus       141 ~~~d~v~d~~g~  152 (258)
                      +++|++|.+.|.
T Consensus        78 g~id~li~~Ag~   89 (244)
T 1edo_A           78 GTIDVVVNNAGI   89 (244)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998873

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.88  E-value=0.0031  Score=50.02  Aligned_cols=96  Identities=11%  Similarity=0.091  Sum_probs=60.1

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           74 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +|||+|+ |.+|..+++.+...  |+ +|+++++++++.+.+...++..+ .|..+   .   +.+.+... ++|+||.+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d---~---~~~~~~~~-~~d~vi~~   72 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGITVRQADYGD---E---AALTSALQ-GVEKLLLI   72 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTCEEEECCTTC---H---HHHHHHTT-TCSEEEEC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCCeEEEcCCCC---H---HHHHHHHh-CCCEEEEe
Confidence            4899997 99999999888777  88 89999998877665555554322 23332   2   23334333 68999998


Q ss_pred             cCCh-----hhHHHHHHhhhcC-CceEEEecccC
Q 025101          150 VGLA-----SLVQEAYACCRKG-WGKTIVLGVDQ  177 (258)
Q Consensus       150 ~g~~-----~~~~~~~~~l~~~-~G~~v~~g~~~  177 (258)
                      .+..     ......++.+... .++++.+++..
T Consensus        73 a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           73 SSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             C--------CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            8742     1233444444432 15788777543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.88  E-value=0.0026  Score=49.64  Aligned_cols=100  Identities=15%  Similarity=0.062  Sum_probs=68.3

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCC-ceEEcCCCCCCccHHHHHHHhcC
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      +.......++.+||-+|+|. |..+..+++.. +. +|++++.+++..+.+++... ..++..+-   .++.      ..
T Consensus        25 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~---~~~~------~~   93 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGP-GNSTELLTDRYGVN-VITGIDSDDDMLEKAADRLPNTNFGKADL---ATWK------PA   93 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTT-THHHHHHHHHHCTT-SEEEEESCHHHHHHHHHHSTTSEEEECCT---TTCC------CS
T ss_pred             HHHhcCCCCCCEEEEecCcC-CHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhCCCcEEEECCh---hhcC------cc
Confidence            34555677889999999874 77888888865 55 89999999998888876432 12322211   1110      12


Q ss_pred             CCCCEEEEecCC------hhhHHHHHHhhhcCCceEEEec
Q 025101          141 GGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.+|+|+....-      ...+..+.+.|+|+ |.++...
T Consensus        94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~  132 (259)
T 2p35_A           94 QKADLLYANAVFQWVPDHLAVLSQLMDQLESG-GVLAVQM  132 (259)
T ss_dssp             SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCC-eEEEEEe
Confidence            379999975421      33477888999999 9988764

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.87  E-value=0.0025  Score=51.63  Aligned_cols=98  Identities=12%  Similarity=0.099  Sum_probs=64.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-C-----C--ceEEcCCCCCCccHHHHHHHhcCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-G-----V--TEFVNSKNCGDKSVSQIIIDMTDG  141 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g-----~--~~vi~~~~~~~~~~~~~i~~~~~~  141 (258)
                      ..+.+||++|+|. |..+..+++..+..+|++++.+++..+.+++. .     .  ..+ ....   .+..+.+.. ..+
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv-~~~~---~D~~~~l~~-~~~  180 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL-DLFC---GDGFEFLKN-HKN  180 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTE-EEEC---SCHHHHHHH-CTT
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCE-EEEE---ChHHHHHHh-cCC
Confidence            4568999999874 77777888765544999999999988888763 1     1  111 1111   345444443 334


Q ss_pred             CCCEEEEecCC----------hhhHHHHHHhhhcCCceEEEec
Q 025101          142 GADYCFECVGL----------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       142 ~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .||+|+-....          ...+..+.+.|+|+ |.++.-.
T Consensus       181 ~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg-G~lv~~~  222 (314)
T 2b2c_A          181 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQG  222 (314)
T ss_dssp             CEEEEEECCC-------------HHHHHHHHEEEE-EEEEEEC
T ss_pred             CceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC-eEEEEEC
Confidence            79999843311          34477889999999 9988654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.87  E-value=0.0054  Score=48.87  Aligned_cols=94  Identities=17%  Similarity=0.183  Sum_probs=63.4

Q ss_pred             cchhhhhhhhhhhhhcCCCCCCEEEEEccC-HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc
Q 025101           52 LSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS  130 (258)
Q Consensus        52 ~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  130 (258)
                      +||....++..|.+..-.-.|++++|+|.| .+|..+++++...|+ .|++..+...                      +
T Consensus       145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~----------------------~  201 (300)
T 4a26_A          145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTS----------------------T  201 (300)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSC----------------------H
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCC----------------------C
Confidence            444444444433333233479999999975 589999999999999 7888765322                      2


Q ss_pred             HH--HHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          131 VS--QIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       131 ~~--~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      +.  +.++     .+|+||.++|.+..+.  -+.++++ ..++.+|..
T Consensus       202 l~l~~~~~-----~ADIVI~Avg~p~~I~--~~~vk~G-avVIDvgi~  241 (300)
T 4a26_A          202 EDMIDYLR-----TADIVIAAMGQPGYVK--GEWIKEG-AAVVDVGTT  241 (300)
T ss_dssp             HHHHHHHH-----TCSEEEECSCCTTCBC--GGGSCTT-CEEEECCCE
T ss_pred             chhhhhhc-----cCCEEEECCCCCCCCc--HHhcCCC-cEEEEEecc
Confidence            22  2222     5899999999876332  3457888 889999854

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.87  E-value=0.0097  Score=47.57  Aligned_cols=74  Identities=24%  Similarity=0.252  Sum_probs=52.6

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCCh
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      +|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|.. +.       .+..+.+.     ..|+||-|+..+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~~~-----~~Dvvi~~vp~~   67 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDAGEQ-VV-------SSPADVAE-----KADRIITMLPTS   67 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTTTCE-EC-------SSHHHHHH-----HCSEEEECCSSH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCe-ec-------CCHHHHHh-----cCCEEEEeCCCH
Confidence            58899999999998888888898 899999999988888776643 21       12222222     378888888665


Q ss_pred             hhHHHHHH
Q 025101          154 SLVQEAYA  161 (258)
Q Consensus       154 ~~~~~~~~  161 (258)
                      ..+...+.
T Consensus        68 ~~~~~v~~   75 (296)
T 2gf2_A           68 INAIEAYS   75 (296)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            43555443

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.87  E-value=0.0006  Score=54.19  Aligned_cols=92  Identities=8%  Similarity=-0.026  Sum_probs=58.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .+++++|+|+|++|.+++..+...|+++|+++.|+.++.+.+.+- . ..+        .+ +.+.+... .+|+||+|+
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~-~-~~~--------~~-~~~~~~~~-~aDiVInaT  183 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLN-I-NKI--------NL-SHAESHLD-EFDIIINTT  183 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSC-C-EEE--------CH-HHHHHTGG-GCSEEEECC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHh-c-ccc--------cH-hhHHHHhc-CCCEEEECc
Confidence            578999999999999999999999987899999998876543321 1 111        11 12222211 699999998


Q ss_pred             CChhh--HH--HHHHhhhcCCceEEEecc
Q 025101          151 GLASL--VQ--EAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       151 g~~~~--~~--~~~~~l~~~~G~~v~~g~  175 (258)
                      +....  ..  .....++++ ..++.+..
T Consensus       184 p~Gm~~~~~~~l~~~~l~~~-~~V~D~vY  211 (277)
T 3don_A          184 PAGMNGNTDSVISLNRLASH-TLVSDIVY  211 (277)
T ss_dssp             C-------CCSSCCTTCCSS-CEEEESCC
T ss_pred             cCCCCCCCcCCCCHHHcCCC-CEEEEecC
Confidence            75321  10  123445666 66666653

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.87  E-value=0.0045  Score=47.46  Aligned_cols=98  Identities=19%  Similarity=0.332  Sum_probs=65.9

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-ceEEcCCCCCCccHHHHHHHhcCC
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCGDKSVSQIIIDMTDG  141 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~~i~~~~~~  141 (258)
                      ..++++++||-+|+|..|..++.+++..+. +|++++.+++..+.+++    .|. ..++..+-   ..+    ....++
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~---~~~----~~~~~~  122 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG---GII----KGVVEG  122 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS---CSS----TTTCCS
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc---hhh----hhcccC
Confidence            346789999999998558888888887666 99999999988877754    343 12332221   001    111223


Q ss_pred             CCCEEEEecCC-------------------------hhhHHHHHHhhhcCCceEEEe
Q 025101          142 GADYCFECVGL-------------------------ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       142 ~~d~v~d~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      .||+|+-....                         ...+..+.+.|+|+ |+++++
T Consensus       123 ~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  178 (230)
T 3evz_A          123 TFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG-GKVALY  178 (230)
T ss_dssp             CEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE-EEEEEE
T ss_pred             ceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC-eEEEEE
Confidence            79999944221                         33477888899999 998875

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=96.86  E-value=0.00088  Score=51.78  Aligned_cols=99  Identities=9%  Similarity=0.078  Sum_probs=65.0

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHH-
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIII-  136 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~-  136 (258)
                      .....++.+||-+|+|. |..+..+++.. +. +|++++.+++..+.+++    .|..   .++..+      ..+.+. 
T Consensus        66 ~~~~~~~~~vLDiG~G~-G~~~~~la~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~~~~  137 (232)
T 3ntv_A           66 LIRMNNVKNILEIGTAI-GYSSMQFASISDDI-HVTTIERNETMIQYAKQNLATYHFENQVRIIEGN------ALEQFEN  137 (232)
T ss_dssp             HHHHHTCCEEEEECCSS-SHHHHHHHTTCTTC-EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC------GGGCHHH
T ss_pred             HHhhcCCCEEEEEeCch-hHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC------HHHHHHh
Confidence            33456789999999874 77778888854 45 99999999988877754    4432   233222      222222 


Q ss_pred             HhcCCCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          137 DMTDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .. .+.||+||-....   ...++.+.+.|+|+ |.++.-.
T Consensus       138 ~~-~~~fD~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~d~  176 (232)
T 3ntv_A          138 VN-DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQ-GLVITDN  176 (232)
T ss_dssp             HT-TSCEEEEEEETTSSSHHHHHHHHGGGEEEE-EEEEEEC
T ss_pred             hc-cCCccEEEEcCcHHHHHHHHHHHHHhcCCC-eEEEEee
Confidence            22 3479999843322   33467888999999 9987643

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.86  E-value=0.0052  Score=52.37  Aligned_cols=103  Identities=17%  Similarity=0.264  Sum_probs=65.7

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHH----hcCCceEEcCCCCCCccHHHHHHHhc
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ....+++|++||=.|+|+ |..+++++..+ +..+|++++.++++.+.++    .+|...+.-..    .+..+ +....
T Consensus        99 ~~L~~~~g~~VLDlcaGp-Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~----~Da~~-l~~~~  172 (456)
T 3m4x_A           99 TAAAAKPGEKVLDLCAAP-GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN----HAPAE-LVPHF  172 (456)
T ss_dssp             HHHCCCTTCEEEESSCTT-CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEEC----CCHHH-HHHHH
T ss_pred             HHcCCCCCCEEEEECCCc-CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe----CCHHH-hhhhc
Confidence            345678999999888754 54555666654 3238999999999987765    36765332111    12222 22222


Q ss_pred             CCCCCEEE-E--ecCCh-------------------------hhHHHHHHhhhcCCceEEEec
Q 025101          140 DGGADYCF-E--CVGLA-------------------------SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~~~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ++.||.|+ |  |+|..                         ..+..+++.|+|+ |+++...
T Consensus       173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYsT  234 (456)
T 3m4x_A          173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK-GQLIYST  234 (456)
T ss_dssp             TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence            34799998 5  54432                         3477888899999 9987544

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.86  E-value=0.0035  Score=49.25  Aligned_cols=78  Identities=18%  Similarity=0.362  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHHHh-cCCceEE--cCCCCCCcc-HHHHHHHhcC
Q 025101           71 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIGKR-FGVTEFV--NSKNCGDKS-VSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~~~---~~~~~~~-~g~~~vi--~~~~~~~~~-~~~~i~~~~~  140 (258)
                      +++++||+|+   |++|.++++.+...|+ +|++++++++   ..+.+.+ .+...++  |..+   .+ +.+.+.+...
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~   82 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQ---DEELDALFAGVKE   82 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCC---HHHHHHHHHHHHH
Confidence            4789999984   6999999888888899 8999998875   2222322 3422222  3333   33 2222222211


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|++|++.|.
T Consensus        83 ~~g~iD~lv~~Ag~   96 (261)
T 2wyu_A           83 AFGGLDYLVHAIAF   96 (261)
T ss_dssp             HHSSEEEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence              279999998873

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.86  E-value=0.0038  Score=48.36  Aligned_cols=78  Identities=15%  Similarity=0.158  Sum_probs=49.7

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCC------eEEEEcCCcchHHHHHh----cCCc-eE--EcCCCCCCcc-HHHHHH
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGAT------RIIGVDVISEKFEIGKR----FGVT-EF--VNSKNCGDKS-VSQIII  136 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~------~v~~~~~~~~~~~~~~~----~g~~-~v--i~~~~~~~~~-~~~~i~  136 (258)
                      ++++||+|+ |++|..+++.+...|+.      +|+++++++++.+.+.+    .+.. .+  .|..+   .+ +.+.+.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~   78 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD---MADVRRLTT   78 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS---HHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCC---HHHHHHHHH
Confidence            568999986 89999998888878874      68999998877654432    2432 12  23332   32 222222


Q ss_pred             Hhc--CCCCCEEEEecCC
Q 025101          137 DMT--DGGADYCFECVGL  152 (258)
Q Consensus       137 ~~~--~~~~d~v~d~~g~  152 (258)
                      +..  -+++|++|.+.|.
T Consensus        79 ~~~~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           79 HIVERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHHHHTSCCSEEEECCCC
T ss_pred             HHHHhCCCCCEEEEcCCc
Confidence            221  1379999998873

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.85  E-value=0.01  Score=45.15  Aligned_cols=75  Identities=15%  Similarity=0.081  Sum_probs=54.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +|+|+|+|.+|..+++.+...|. .|+++++++++.+.+. +.|.. ++..+-    .-.+.+.+..-.++|.++-+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~-~i~gd~----~~~~~l~~a~i~~ad~vi~~~~~   75 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKAT-IIHGDG----SHKEILRDAEVSKNDVVVILTPR   75 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSE-EEESCT----TSHHHHHHHTCCTTCEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCe-EEEcCC----CCHHHHHhcCcccCCEEEEecCC
Confidence            58899999999999999998999 8999999999887754 46654 332221    11223333322279999999998


Q ss_pred             hh
Q 025101          153 AS  154 (258)
Q Consensus       153 ~~  154 (258)
                      ..
T Consensus        76 d~   77 (218)
T 3l4b_C           76 DE   77 (218)
T ss_dssp             HH
T ss_pred             cH
Confidence            76

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.85  E-value=0.0078  Score=50.66  Aligned_cols=130  Identities=13%  Similarity=0.086  Sum_probs=82.4

Q ss_pred             CEEEEEccCHHHHHHHHHHHHc---------CCCeEEEE-cCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLC---------GATRIIGV-DVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG  141 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~---------g~~~v~~~-~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~  141 (258)
                      =+|.|+|+|.+|..-+...+..         ++ +++++ ++++++.+ +++++|...++       .++.+.+.+   .
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~-elvav~d~~~~~a~~~a~~~~~~~~y-------~d~~~ll~~---~   95 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRP-HLYALADQDQAMAERHAAKLGAEKAY-------GDWRELVND---P   95 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEE-EEEEEECSSHHHHHHHHHHHTCSEEE-------SSHHHHHHC---T
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCe-EEEEEEcCCHHHHHHHHHHcCCCeEE-------CCHHHHhcC---C
Confidence            3789999999998766555533         34 56654 55666654 45778887665       344444432   2


Q ss_pred             CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHH---H----HhcCceEEecccCCCCCCCcHHHHH
Q 025101          142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE---V----LHSGKILMGSLFGGLKAKSDIPILL  214 (258)
Q Consensus       142 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~  214 (258)
                      .+|+|+-|+......+.+..+++.  |+-+++-...     ..+...   +    -.++..+.-.+  +..+...++.+.
T Consensus        96 ~vD~V~I~tp~~~H~~~~~~al~a--GkhVl~EKP~-----a~~~~ea~~l~~~a~~~g~~~~v~~--~~R~~p~~~~~k  166 (412)
T 4gqa_A           96 QVDVVDITSPNHLHYTMAMAAIAA--GKHVYCEKPL-----AVNEQQAQEMAQAARRAGVKTMVAF--NNIKTPAALLAK  166 (412)
T ss_dssp             TCCEEEECSCGGGHHHHHHHHHHT--TCEEEEESCS-----CSSHHHHHHHHHHHHHHTCCEEEEC--GGGTSHHHHHHH
T ss_pred             CCCEEEECCCcHHHHHHHHHHHHc--CCCeEeecCC-----cCCHHHHHHHHHHHHHhCCeeeecc--ceecCHHHHHHH
Confidence            799999999988878889988886  6666676332     222211   1    22344333222  233356688888


Q ss_pred             HHHHcCCC
Q 025101          215 KRYMDKEL  222 (258)
Q Consensus       215 ~~~~~g~~  222 (258)
                      +++.+|.+
T Consensus       167 ~~i~~G~i  174 (412)
T 4gqa_A          167 QIIARGDI  174 (412)
T ss_dssp             HHHHHTTT
T ss_pred             HHHhcCCc
Confidence            89998865

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=96.84  E-value=0.00064  Score=52.28  Aligned_cols=95  Identities=14%  Similarity=0.119  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC-ceEEcCCCCCCccHHHHHHHhc-CCCCCEE
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMT-DGGADYC  146 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~~i~~~~-~~~~d~v  146 (258)
                      +.++.+||-+|+|. |..+..+++. |. +|++++.++...+.+++... ..++..+-   .+.   + ... .+.||+|
T Consensus        46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~---~-~~~~~~~fD~v  115 (226)
T 3m33_A           46 LTPQTRVLEAGCGH-GPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEWNG---KGE---L-PAGLGAPFGLI  115 (226)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEECCS---CSS---C-CTTCCCCEEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEcch---hhc---c-CCcCCCCEEEE
Confidence            36789999999874 7777777776 77 99999999999888877532 12322211   000   0 111 2379999


Q ss_pred             EEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          147 FECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       147 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +........+..+.+.|+|+ |+++..+
T Consensus       116 ~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  142 (226)
T 3m33_A          116 VSRRGPTSVILRLPELAAPD-AHFLYVG  142 (226)
T ss_dssp             EEESCCSGGGGGHHHHEEEE-EEEEEEE
T ss_pred             EeCCCHHHHHHHHHHHcCCC-cEEEEeC
Confidence            98766666688999999999 9998444

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.84  E-value=0.0021  Score=50.74  Aligned_cols=77  Identities=16%  Similarity=0.222  Sum_probs=50.6

Q ss_pred             CCCEEEEEc---cCHHHHHHHHHHHHcCCCeEEEEcCCcch-HHH-HHhcCCc-eE--EcCCCCCCccHH----HHHHHh
Q 025101           71 VGSTVVIFG---LGSIGLAVAEGARLCGATRIIGVDVISEK-FEI-GKRFGVT-EF--VNSKNCGDKSVS----QIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G---~g~~G~~a~~l~~~~g~~~v~~~~~~~~~-~~~-~~~~g~~-~v--i~~~~~~~~~~~----~~i~~~  138 (258)
                      +++++||+|   +|++|.++++.+...|+ +|+++++++++ .+. .++++.. .+  .|..+   ++..    +.+.+.
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~   81 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN---EEHLASLAGRVTEA   81 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCC---HHHHHHHHHHHHHH
Confidence            478999998   47999999998888999 89999988765 233 3445432 12  23333   3322    233333


Q ss_pred             cC--CCCCEEEEecC
Q 025101          139 TD--GGADYCFECVG  151 (258)
Q Consensus       139 ~~--~~~d~v~d~~g  151 (258)
                      .+  +++|++|++.|
T Consensus        82 ~g~~~~iD~lv~nAg   96 (269)
T 2h7i_A           82 IGAGNKLDGVVHSIG   96 (269)
T ss_dssp             HCTTCCEEEEEECCC
T ss_pred             hCCCCCceEEEECCc
Confidence            33  16999999887

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.84  E-value=0.0031  Score=48.84  Aligned_cols=77  Identities=22%  Similarity=0.195  Sum_probs=49.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhcCCc-eE-E--cCCCCCCccHH-HHHHHhcC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVT-EF-V--NSKNCGDKSVS-QIIIDMTD  140 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~-~~~~~~~~~~----~~~g~~-~v-i--~~~~~~~~~~~-~~i~~~~~  140 (258)
                      ++++||+|+ |++|..+++.+...|+ +|+++ ++++++.+.+    ++.+.. .. +  |..+   .+.. +.+.+...
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~   76 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE---AEAATALVHQAAE   76 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTS---HHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCC---HHHHHHHHHHHHH
Confidence            367999987 8999999998888999 89888 7887765543    223432 12 2  3333   3322 22222211


Q ss_pred             --CCCCEEEEecCC
Q 025101          141 --GGADYCFECVGL  152 (258)
Q Consensus       141 --~~~d~v~d~~g~  152 (258)
                        +++|++|.+.|.
T Consensus        77 ~~~~~d~li~~Ag~   90 (245)
T 2ph3_A           77 VLGGLDTLVNNAGI   90 (245)
T ss_dssp             HHTCCCEEEECCCC
T ss_pred             hcCCCCEEEECCCC
Confidence              379999998873

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.83  E-value=0.0097  Score=48.61  Aligned_cols=87  Identities=17%  Similarity=0.106  Sum_probs=61.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.+++.++.  +++. +.    +.    .++.+.+.     ..|+|+.++
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~--~~~~-~~----~~----~~l~ell~-----~aDvV~l~~  207 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE--LEKK-GY----YV----DSLDDLYK-----QADVISLHV  207 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH--HHHT-TC----BC----SCHHHHHH-----HCSEEEECS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh--HHhh-Ce----ec----CCHHHHHh-----hCCEEEEcC
Confidence            47899999999999999999999999 999999887665  2332 22    11    12333332     488999887


Q ss_pred             CChh-h---H-HHHHHhhhcCCceEEEecc
Q 025101          151 GLAS-L---V-QEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       151 g~~~-~---~-~~~~~~l~~~~G~~v~~g~  175 (258)
                      .... +   + ...+..++++ +.++.++.
T Consensus       208 p~~~~t~~li~~~~l~~mk~g-a~lIn~ar  236 (333)
T 1j4a_A          208 PDVPANVHMINDESIAKMKQD-VVIVNVSR  236 (333)
T ss_dssp             CCCGGGTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred             CCcHHHHHHHhHHHHhhCCCC-cEEEECCC
Confidence            7432 1   1 3466778887 88887764

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.83  E-value=0.0081  Score=47.26  Aligned_cols=102  Identities=17%  Similarity=0.241  Sum_probs=69.3

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  135 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i  135 (258)
                      +.+...+.++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++    .|..   .++..+-   .++    
T Consensus        53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~----  123 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADA---MDL----  123 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC----
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc---ccC----
Confidence            34566778999999999975 8888888887787 99999999988777654    2421   2222211   111    


Q ss_pred             HHhcCCCCCEEEEecC-----C-hhhHHHHHHhhhcCCceEEEecc
Q 025101          136 IDMTDGGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                       ...++.+|+|+....     . ...+..+.+.|+|+ |++++...
T Consensus       124 -~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~  167 (273)
T 3bus_A          124 -PFEDASFDAVWALESLHHMPDRGRALREMARVLRPG-GTVAIADF  167 (273)
T ss_dssp             -CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE-EEEEEEEE
T ss_pred             -CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence             011237999985321     1 33578889999999 99887653

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.82  E-value=0.0041  Score=46.66  Aligned_cols=61  Identities=23%  Similarity=0.339  Sum_probs=42.9

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc-HHHHHHHhcCCCCCEEEEecC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS-VSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~-~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      ++||+|+ |.+|..+++.+. .|+ +|++++++++          ....|..+   .+ +.+.+.+.  +++|++|.+.|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~----------~~~~D~~~---~~~~~~~~~~~--~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG----------DVTVDITN---IDSIKKMYEQV--GKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS----------SEECCTTC---HHHHHHHHHHH--CCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc----------ceeeecCC---HHHHHHHHHHh--CCCCEEEECCC
Confidence            7999986 999999998888 898 8999998764          12234433   33 22233332  36899999887

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.82  E-value=0.011  Score=48.43  Aligned_cols=131  Identities=13%  Similarity=0.002  Sum_probs=80.7

Q ss_pred             CEEEEEccC-HHHHHHHHHHHHc--CCCeEEE-EcCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           73 STVVIFGLG-SIGLAVAEGARLC--GATRIIG-VDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        73 ~~vlI~G~g-~~G~~a~~l~~~~--g~~~v~~-~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      -+|.|+|+| .+|...+..++..  ++ ++++ .++++++.+ +++++|...++       .++.+.+.+   ..+|+|+
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~~~a~~~~~~~~~-------~~~~~ll~~---~~vD~V~   87 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLF-EITAVTSRTRSHAEEFAKMVGNPAVF-------DSYEELLES---GLVDAVD   87 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTE-EEEEEECSSHHHHHHHHHHHSSCEEE-------SCHHHHHHS---SCCSEEE
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCce-EEEEEEcCCHHHHHHHHHHhCCCccc-------CCHHHHhcC---CCCCEEE
Confidence            478899999 7898777766655  45 5544 566666654 45668864444       334444432   2799999


Q ss_pred             EecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHH---H----HhcCceEEecccCCCCCCCcHHHHHHHHHcC
Q 025101          148 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE---V----LHSGKILMGSLFGGLKAKSDIPILLKRYMDK  220 (258)
Q Consensus       148 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  220 (258)
                      .|++.....+.+..+++.  |+-+++....     ..+...   +    -.++..+.-..  ...+...++.+.+++.+|
T Consensus        88 i~tp~~~H~~~~~~al~a--GkhVl~EKPl-----a~~~~ea~~l~~~a~~~g~~~~v~~--~~R~~p~~~~~k~~i~~g  158 (340)
T 1zh8_A           88 LTLPVELNLPFIEKALRK--GVHVICEKPI-----STDVETGKKVVELSEKSEKTVYIAE--NFRHVPAFWKAKELVESG  158 (340)
T ss_dssp             ECCCGGGHHHHHHHHHHT--TCEEEEESSS-----SSSHHHHHHHHHHHHHCSSCEEEEC--GGGGCHHHHHHHHHHHTT
T ss_pred             EeCCchHHHHHHHHHHHC--CCcEEEeCCC-----CCCHHHHHHHHHHHHHcCCeEEEEe--cccCCHHHHHHHHHHhcC
Confidence            999988778888888876  5666665322     122211   1    22344333221  233345688888889888


Q ss_pred             CCC
Q 025101          221 ELE  223 (258)
Q Consensus       221 ~~~  223 (258)
                      .+-
T Consensus       159 ~iG  161 (340)
T 1zh8_A          159 AIG  161 (340)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            653

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.82  E-value=0.0033  Score=51.71  Aligned_cols=129  Identities=9%  Similarity=0.071  Sum_probs=77.0

Q ss_pred             EEEEEccCHHHH-HHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCC--ceEEcCCCCCCccHHHHHHHhcCC-CCCEEEE
Q 025101           74 TVVIFGLGSIGL-AVAEGARLC-GATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFE  148 (258)
Q Consensus        74 ~vlI~G~g~~G~-~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d  148 (258)
                      +|.|+|+|.+|. ..+..++.. ++ +++++.......+++++++.  ..+++       ++.+.+    .. .+|+|+.
T Consensus         4 rvgiiG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~a~~~~~~~~~~~~-------~~~~ll----~~~~~D~V~i   71 (349)
T 3i23_A            4 KMGFIGFGKSANRYHLPYVMIRETL-EVKTIFDLHVNEKAAAPFKEKGVNFTA-------DLNELL----TDPEIELITI   71 (349)
T ss_dssp             EEEEECCSHHHHHTTHHHHTTCTTE-EEEEEECTTCCHHHHHHHHTTTCEEES-------CTHHHH----SCTTCCEEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhhCCCe-EEEEEECCCHHHHHHHhhCCCCCeEEC-------CHHHHh----cCCCCCEEEE
Confidence            688999999998 567766544 66 77766544444555566432  13331       222222    23 7999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHH------H-HhcCceEEecccCCCCCCCcHHHHHHHHHcCC
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------V-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKE  221 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  221 (258)
                      |++.....+.+..+++.  |+-+++...     +..+...      . -.++..+.-.+  +..+...++.+.+++.+|.
T Consensus        72 ~tp~~~h~~~~~~al~a--Gk~Vl~EKP-----~a~~~~e~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~~~~i~~g~  142 (349)
T 3i23_A           72 CTPAHTHYDLAKQAILA--GKSVIVEKP-----FCDTLEHAEELFALGQEKGVVVMPYQ--NRRFDGDYLAMKQVVEQGF  142 (349)
T ss_dssp             CSCGGGHHHHHHHHHHT--TCEEEECSC-----SCSSHHHHHHHHHHHHHTTCCEEECC--GGGGCHHHHHHHHHHHHTT
T ss_pred             eCCcHHHHHHHHHHHHc--CCEEEEECC-----CcCCHHHHHHHHHHHHHcCCeEEEEe--cccCCHHHHHHHHHHhcCC
Confidence            99988878888888886  555666422     2222211      1 23344443322  2233456788888888886


Q ss_pred             CC
Q 025101          222 LE  223 (258)
Q Consensus       222 ~~  223 (258)
                      +.
T Consensus       143 iG  144 (349)
T 3i23_A          143 LG  144 (349)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.80  E-value=0.0031  Score=47.63  Aligned_cols=96  Identities=15%  Similarity=0.145  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC----ceEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV----TEFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~----~~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      +.++.+||.+|+|. |..+..+++. |..+|++++.++...+.+++...    -.++..+-   .++     ....+.+|
T Consensus        40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~---~~~-----~~~~~~fD  109 (215)
T 2pxx_A           40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV---RKL-----DFPSASFD  109 (215)
T ss_dssp             CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT---TSC-----CSCSSCEE
T ss_pred             cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch---hcC-----CCCCCccc
Confidence            47789999999875 7777777776 54489999999998888876421    12222211   111     11223799


Q ss_pred             EEEEecC---------------------ChhhHHHHHHhhhcCCceEEEecc
Q 025101          145 YCFECVG---------------------LASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       145 ~v~d~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      +|+....                     ....+..+.+.|+|+ |++++...
T Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~  160 (215)
T 2pxx_A          110 VVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG-GRFISMTS  160 (215)
T ss_dssp             EEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             EEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC-CEEEEEeC
Confidence            9996321                     134577888999999 99987753

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.80  E-value=0.014  Score=48.19  Aligned_cols=129  Identities=17%  Similarity=0.122  Sum_probs=77.7

Q ss_pred             CEEEEEccCHHHHH-HHHHHHHc-CCCeEEEE-cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           73 STVVIFGLGSIGLA-VAEGARLC-GATRIIGV-DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        73 ~~vlI~G~g~~G~~-a~~l~~~~-g~~~v~~~-~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -+|.|+|+|.+|.. .+..++.. ++ +++++ ++++++.+  ++++...++       .++.+.+.+   ..+|+|+.|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~--~~~~~~~~~-------~~~~~ll~~---~~~D~V~i~   74 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGL-NLAFVASRDEEKVK--RDLPDVTVI-------ASPEAAVQH---PDVDLVVIA   74 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTE-EEEEEECSCHHHHH--HHCTTSEEE-------SCHHHHHTC---TTCSEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCe-EEEEEEcCCHHHHH--hhCCCCcEE-------CCHHHHhcC---CCCCEEEEe
Confidence            37899999999985 66666655 66 66654 55554433  445433444       233333321   279999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHH------H-HhcCceEEecccCCCCCCCcHHHHHHHHHcCCC
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------V-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  222 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  222 (258)
                      +......+.+..++..  |+-+++...     +..+...      . -.++..+.-..  ...+...++.+.+++.+|.+
T Consensus        75 tp~~~H~~~~~~al~a--Gk~Vl~EKP-----la~~~~e~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~~~~i~~g~i  145 (364)
T 3e82_A           75 SPNATHAPLARLALNA--GKHVVVDKP-----FTLDMQEARELIALAEEKQRLLSVFH--NRRWDSDYLGIRQVIEQGTL  145 (364)
T ss_dssp             SCGGGHHHHHHHHHHT--TCEEEECSC-----SCSSHHHHHHHHHHHHHTTCCEEECC--CCTTCHHHHHHHHHHHHTTT
T ss_pred             CChHHHHHHHHHHHHC--CCcEEEeCC-----CcCCHHHHHHHHHHHHHhCCeEEEEe--ecccCHHHHHHHHHHHcCCC
Confidence            9988878888888876  565666532     2222211      1 23344443322  23334568888889988865


Q ss_pred             C
Q 025101          223 E  223 (258)
Q Consensus       223 ~  223 (258)
                      -
T Consensus       146 G  146 (364)
T 3e82_A          146 G  146 (364)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.80  E-value=0.0041  Score=49.53  Aligned_cols=77  Identities=16%  Similarity=0.139  Sum_probs=48.8

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCCcch---HHHHHh-cCCceE--EcCCCCCCccHH-HHHHHhc-
Q 025101           71 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEK---FEIGKR-FGVTEF--VNSKNCGDKSVS-QIIIDMT-  139 (258)
Q Consensus        71 ~g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~~~~---~~~~~~-~g~~~v--i~~~~~~~~~~~-~~i~~~~-  139 (258)
                      .|+++||+|+   |++|.++++.+...|+ +|++++++++.   .+.+.+ .+...+  .|..+   .+-. +.+.+.. 
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~---~~~v~~~~~~~~~   95 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSL---DEDIKNLKKFLEE   95 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCC---HHHHHHHHHHHHH
Confidence            5789999985   6999999998888899 89999988752   222222 342222  23333   3322 2222221 


Q ss_pred             -CCCCCEEEEecC
Q 025101          140 -DGGADYCFECVG  151 (258)
Q Consensus       140 -~~~~d~v~d~~g  151 (258)
                       -+++|++|++.|
T Consensus        96 ~~g~iD~lv~~Ag  108 (285)
T 2p91_A           96 NWGSLDIIVHSIA  108 (285)
T ss_dssp             HTSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence             137999999887

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.80  E-value=0.0075  Score=49.11  Aligned_cols=136  Identities=12%  Similarity=0.112  Sum_probs=78.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHHc-CCCeEEE-EcCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           73 STVVIFGLGSIGLAVAEGARLC-GATRIIG-VDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~-~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -+|.|+|+|.+|...+..++.. ++ ++++ .++++++.+ +++++|...++       .++.+.+.+   ..+|+|+.|
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~-~~~av~d~~~~~~~~~a~~~~~~~~~-------~~~~~ll~~---~~~D~V~i~   74 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNG-EVVAVSSRTLESAQAFANKYHLPKAY-------DKLEDMLAD---ESIDVIYVA   74 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSE-EEEEEECSCSSTTCC---CCCCSCEE-------SCHHHHHTC---TTCCEEEEC
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHHHcCCCccc-------CCHHHHhcC---CCCCEEEEC
Confidence            3788999999998777766654 45 5554 466766654 45567765443       233333321   279999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEecccCCCCceee-chHHH-HhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFEV-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      +......+.+..++..  |+-+++........... ..... -.++..+.-..  ...+...++.+.+++.+|.+.
T Consensus        75 tp~~~h~~~~~~al~a--Gk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~--~~r~~p~~~~~~~~i~~g~iG  146 (329)
T 3evn_A           75 TINQDHYKVAKAALLA--GKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQ--KSVFIPMTQVIKKLLASGEIG  146 (329)
T ss_dssp             SCGGGHHHHHHHHHHT--TCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEEC--SSCSSHHHHHHHHHHHTTTTC
T ss_pred             CCcHHHHHHHHHHHHC--CCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEE--cccCCHHHHHHHHHHhCCCCC
Confidence            9988878888888776  55555653221110000 01111 23344443222  233345678888899888653

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.80  E-value=0.0058  Score=48.70  Aligned_cols=77  Identities=14%  Similarity=0.178  Sum_probs=58.2

Q ss_pred             CCCCEEEEEccC-HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           70 EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        70 ~~g~~vlI~G~g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      -.|.+++|+|.| .+|.-+++++...|+ +|++..+.                   .   .++.+.++     .+|+||.
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~-------------------t---~~L~~~~~-----~ADIVI~  214 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSK-------------------T---AHLDEEVN-----KGDILVV  214 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C---SSHHHHHT-----TCSEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECC-------------------c---ccHHHHhc-----cCCEEEE
Confidence            479999999987 689999999999999 78877522                   1   34444443     5999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      ++|.+..+  --+.++++ ..++.+|...
T Consensus       215 Avg~p~~I--~~~~vk~G-avVIDVgi~~  240 (301)
T 1a4i_A          215 ATGQPEMV--KGEWIKPG-AIVIDCGINY  240 (301)
T ss_dssp             CCCCTTCB--CGGGSCTT-CEEEECCCBC
T ss_pred             CCCCcccC--CHHHcCCC-cEEEEccCCC
Confidence            99998632  33457888 9999998653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.80  E-value=0.0052  Score=50.03  Aligned_cols=76  Identities=22%  Similarity=0.254  Sum_probs=48.8

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHhcCC--c-eEEcCCCCCCccHHHHHHHhcCC-CCC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF--EIGKRFGV--T-EFVNSKNCGDKSVSQIIIDMTDG-GAD  144 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~--~~~~~~g~--~-~vi~~~~~~~~~~~~~i~~~~~~-~~d  144 (258)
                      +++|||+|+ |.+|..+++.+...|+ +|+++++++++.  +.+++++.  . .++ .-+..+.+   .+.+...+ ++|
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~---~~~~~~~~~~~d   77 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELGIENDVKII-HMDLLEFS---NIIRTIEKVQPD   77 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTTCTTTEEEC-CCCTTCHH---HHHHHHHHHCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccccccHhhccccCceeEE-ECCCCCHH---HHHHHHHhcCCC
Confidence            678999987 9999999988888898 999999987653  24444421  1 122 11111122   22222222 689


Q ss_pred             EEEEecCC
Q 025101          145 YCFECVGL  152 (258)
Q Consensus       145 ~v~d~~g~  152 (258)
                      +||.+.+.
T Consensus        78 ~vih~A~~   85 (345)
T 2z1m_A           78 EVYNLAAQ   85 (345)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998874

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.79  E-value=0.014  Score=46.36  Aligned_cols=89  Identities=17%  Similarity=0.308  Sum_probs=60.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCCce-EEcCCCCCCccHHHHHHHhcCC-CCCEEEEe
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTDG-GADYCFEC  149 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~  149 (258)
                      .+|.|+|+|.+|.+.++.++..|.. +|++.++++++.+.+++.|... ..+  +     ..+.+     . +.|+||.|
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~--~-----~~~~~-----~~~aDvVila   69 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTT--S-----IAKVE-----DFSPDFVMLS   69 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEES--C-----GGGGG-----GTCCSEEEEC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccC--C-----HHHHh-----cCCCCEEEEc
Confidence            3689999999999999988888752 6999999999988888888642 221  1     11111     2 58999999


Q ss_pred             cCChhh---HHHHHHhhhcCCceEEEec
Q 025101          150 VGLASL---VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       150 ~g~~~~---~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.....   +......++++ ..++.++
T Consensus        70 vp~~~~~~v~~~l~~~l~~~-~iv~~~~   96 (281)
T 2g5c_A           70 SPVRTFREIAKKLSYILSED-ATVTDQG   96 (281)
T ss_dssp             SCHHHHHHHHHHHHHHSCTT-CEEEECC
T ss_pred             CCHHHHHHHHHHHHhhCCCC-cEEEECC
Confidence            987552   22333445555 6555554

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.78  E-value=0.0015  Score=51.45  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=48.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce-EEcCCCCCCcc-HHHHHHHhcC--CCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKS-VSQIIIDMTD--GGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~-~~~~i~~~~~--~~~d~  145 (258)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++.+..   .+.. ..|-.+   ++ +.+.+.+...  +++|+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~---~~~~~~~Dv~d---~~~v~~~~~~~~~~~g~iD~   99 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSADP---DIHTVAGDISK---PETADRIVREGIERFGRIDS   99 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSST---TEEEEESCTTS---HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccC---ceEEEEccCCC---HHHHHHHHHHHHHHCCCCCE
Confidence            5789999986 8999999998888999 999999887653211   1111 123333   33 2222222211  27999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      +|++.|.
T Consensus       100 lv~nAg~  106 (260)
T 3un1_A          100 LVNNAGV  106 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9998874

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.78  E-value=0.01  Score=48.40  Aligned_cols=130  Identities=11%  Similarity=0.096  Sum_probs=80.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC---CCeEEE-EcCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           74 TVVIFGLGSIGLAVAEGARLCG---ATRIIG-VDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g---~~~v~~-~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      ++.|+|+|.+|...+..++..+   + ++++ .++++++.+ +++++|...++       .++.+.+.+   ..+|+|+-
T Consensus         4 rigiiG~G~ig~~~~~~l~~~~~~~~-~l~av~d~~~~~a~~~a~~~~~~~~~-------~~~~~ll~~---~~vD~V~i   72 (334)
T 3ohs_X            4 RWGIVSVGLISSDFTAVLQTLPRSEH-QVVAVAARDLSRAKEFAQKHDIPKAY-------GSYEELAKD---PNVEVAYV   72 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSCTTTE-EEEEEECSSHHHHHHHHHHHTCSCEE-------SSHHHHHHC---TTCCEEEE
T ss_pred             EEEEECchHHHHHHHHHHHhCCCCCe-EEEEEEcCCHHHHHHHHHHcCCCccc-------CCHHHHhcC---CCCCEEEE
Confidence            6889999999988777666553   3 4555 466666654 45668875454       334443332   27999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHH------H-HhcCceEEecccCCCCCCCcHHHHHHHHHcCC
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------V-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKE  221 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  221 (258)
                      |+......+.+..++..  |+-+++....     ..+...      . -.++..+.-..  ...+...++.+.+++.+|.
T Consensus        73 ~tp~~~H~~~~~~al~~--GkhVl~EKP~-----a~~~~e~~~l~~~a~~~~~~~~v~~--~~r~~p~~~~~k~~i~~g~  143 (334)
T 3ohs_X           73 GTQHPQHKAAVMLCLAA--GKAVLCEKPM-----GVNAAEVREMVTEARSRGLFLMEAI--WTRFFPASEALRSVLAQGT  143 (334)
T ss_dssp             CCCGGGHHHHHHHHHHT--TCEEEEESSS-----SSSHHHHHHHHHHHHHTTCCEEEEC--GGGGSHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHhc--CCEEEEECCC-----CCCHHHHHHHHHHHHHhCCEEEEEE--hHhcCHHHHHHHHHHhcCC
Confidence            99988878888888876  5556665322     222211      1 22344433222  2223456788888888886


Q ss_pred             CC
Q 025101          222 LE  223 (258)
Q Consensus       222 ~~  223 (258)
                      +-
T Consensus       144 iG  145 (334)
T 3ohs_X          144 LG  145 (334)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.78  E-value=0.004  Score=50.63  Aligned_cols=78  Identities=10%  Similarity=0.080  Sum_probs=47.7

Q ss_pred             CCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHhcC--Cc-eEE--cCCCCCCccHHHHHHHhc
Q 025101           68 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF--EIGKRFG--VT-EFV--NSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        68 ~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~--~~~~~~g--~~-~vi--~~~~~~~~~~~~~i~~~~  139 (258)
                      ..+++.+|||+|+ |.+|..+++.+...|+ +|+++++++++.  +.++.+.  .. .++  |..+   .+   .+.+..
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~---~~~~~~   82 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD---AC---SVQRAV   82 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTC---HH---HHHHHH
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCccccccchhhccccCceEEEECCCCC---HH---HHHHHH
Confidence            3467899999986 9999999998888898 999999876542  2333331  11 122  3222   22   222222


Q ss_pred             CC-CCCEEEEecCC
Q 025101          140 DG-GADYCFECVGL  152 (258)
Q Consensus       140 ~~-~~d~v~d~~g~  152 (258)
                      .+ ++|+||.+.+.
T Consensus        83 ~~~~~d~Vih~A~~   96 (335)
T 1rpn_A           83 IKAQPQEVYNLAAQ   96 (335)
T ss_dssp             HHHCCSEEEECCSC
T ss_pred             HHcCCCEEEECccc
Confidence            23 68999998874

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=96.77  E-value=0.0094  Score=43.21  Aligned_cols=100  Identities=19%  Similarity=0.184  Sum_probs=62.7

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcC-CCCCE
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD-GGADY  145 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~-~~~d~  145 (258)
                      .+.++++||.+|+|. |..+..+++..|. .++++++.++ ..+.    ....++..+- ...+..+.+....+ +.+|+
T Consensus        19 ~~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----~~~~~~~~d~-~~~~~~~~~~~~~~~~~~D~   91 (180)
T 1ej0_A           19 LFKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI----VGVDFLQGDF-RDELVMKALLERVGDSKVQV   91 (180)
T ss_dssp             CCCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC----TTEEEEESCT-TSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc----CcEEEEEccc-ccchhhhhhhccCCCCceeE
Confidence            367889999999976 8888888887642 3899999887 3322    2112222221 01222222333233 37999


Q ss_pred             EEEe-----cCC------------hhhHHHHHHhhhcCCceEEEecc
Q 025101          146 CFEC-----VGL------------ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       146 v~d~-----~g~------------~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      |+..     .+.            ...+..+.+.++++ |.++....
T Consensus        92 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  137 (180)
T 1ej0_A           92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVKVF  137 (180)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             EEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            9972     232            24577888999999 99987653

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.77  E-value=0.0037  Score=49.53  Aligned_cols=77  Identities=14%  Similarity=0.185  Sum_probs=49.2

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHHHh-cCCceE--EcCCCCCCcc-HHHHHHHhc-
Q 025101           71 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIGKR-FGVTEF--VNSKNCGDKS-VSQIIIDMT-  139 (258)
Q Consensus        71 ~g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~~~---~~~~~~~-~g~~~v--i~~~~~~~~~-~~~~i~~~~-  139 (258)
                      +|+++||+|+   |++|.++++.+...|+ +|++++++++   ..+.+++ .+...+  .|..+   .+ +.+.+.+.. 
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~   80 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK---EEHFKSLYNSVKK   80 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCC---HHHHHHHHHHHHH
Confidence            4789999984   7999999998888899 8999998875   2333322 342222  23333   33 222222221 


Q ss_pred             -CCCCCEEEEecC
Q 025101          140 -DGGADYCFECVG  151 (258)
Q Consensus       140 -~~~~d~v~d~~g  151 (258)
                       -+++|++|++.|
T Consensus        81 ~~g~id~lv~nAg   93 (275)
T 2pd4_A           81 DLGSLDFIVHSVA   93 (275)
T ss_dssp             HTSCEEEEEECCC
T ss_pred             HcCCCCEEEECCc
Confidence             137999999887

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.77  E-value=0.0092  Score=48.89  Aligned_cols=87  Identities=22%  Similarity=0.263  Sum_probs=60.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.+++..+.+...  |+.. .       .++.+.+.     ..|+|+-++
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~--g~~~-~-------~~l~ell~-----~sDvV~l~~  235 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHALEE--GAIY-H-------DTLDSLLG-----ASDIFLIAA  235 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHT--TCEE-C-------SSHHHHHH-----TCSEEEECS
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcchhhhc--CCeE-e-------CCHHHHHh-----hCCEEEEec
Confidence            47899999999999999999999999 9999998875554432  4321 1       12333332     578888877


Q ss_pred             CC-hhh----HHHHHHhhhcCCceEEEec
Q 025101          151 GL-ASL----VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~-~~~----~~~~~~~l~~~~G~~v~~g  174 (258)
                      .. +.+    -...+..++++ ..++.++
T Consensus       236 Plt~~T~~li~~~~l~~mk~g-ailIN~a  263 (345)
T 4g2n_A          236 PGRPELKGFLDHDRIAKIPEG-AVVINIS  263 (345)
T ss_dssp             CCCGGGTTCBCHHHHHHSCTT-EEEEECS
T ss_pred             CCCHHHHHHhCHHHHhhCCCC-cEEEECC
Confidence            63 221    14566778887 7777776

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.76  E-value=0.004  Score=50.65  Aligned_cols=76  Identities=17%  Similarity=0.150  Sum_probs=50.4

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-----CCc-eEE---cCCCCCCccHHHHHHHh
Q 025101           69 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----GVT-EFV---NSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        69 ~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-----g~~-~vi---~~~~~~~~~~~~~i~~~  138 (258)
                      .-++.+|||+|+ |.+|..+++.+...|+ +|++++++.++.+.+.+.     +.. .++   |..+   .+.   +.+.
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d---~~~---~~~~   80 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK---QGA---YDEV   80 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS---TTT---TTTT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC---hHH---HHHH
Confidence            346789999987 9999999988888899 999999988765544321     211 222   3322   221   1222


Q ss_pred             cCCCCCEEEEecCC
Q 025101          139 TDGGADYCFECVGL  152 (258)
Q Consensus       139 ~~~~~d~v~d~~g~  152 (258)
                      .. ++|+||.+.+.
T Consensus        81 ~~-~~d~vih~A~~   93 (342)
T 1y1p_A           81 IK-GAAGVAHIASV   93 (342)
T ss_dssp             TT-TCSEEEECCCC
T ss_pred             Hc-CCCEEEEeCCC
Confidence            22 69999998864

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.76  E-value=0.0089  Score=51.49  Aligned_cols=84  Identities=18%  Similarity=0.181  Sum_probs=52.8

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch---H----HHHHhcCCceEEcCCCCCCcc-HHHHHHHhc
Q 025101           69 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK---F----EIGKRFGVTEFVNSKNCGDKS-VSQIIIDMT  139 (258)
Q Consensus        69 ~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~---~----~~~~~~g~~~vi~~~~~~~~~-~~~~i~~~~  139 (258)
                      ++++.++||+|+ |++|..+++.+...|+.+|+.+++++..   .    +.+++.|....+-.-+..+.+ +...+.+..
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~  302 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIG  302 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence            467899999986 9999999888877898568989888642   1    223445653222111211133 333333332


Q ss_pred             C-CCCCEEEEecCC
Q 025101          140 D-GGADYCFECVGL  152 (258)
Q Consensus       140 ~-~~~d~v~d~~g~  152 (258)
                      . +.+|.||.+.|.
T Consensus       303 ~~g~ld~VIh~AG~  316 (486)
T 2fr1_A          303 DDVPLSAVFHAAAT  316 (486)
T ss_dssp             TTSCEEEEEECCCC
T ss_pred             hcCCCcEEEECCcc
Confidence            2 268999998873

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=96.75  E-value=0.016  Score=42.94  Aligned_cols=96  Identities=18%  Similarity=0.195  Sum_probs=61.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc--eEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      .++.+||-+|+|. |..++.+++ .|..+|++++.+++..+.+++    .+.+  .++.      .+..+.......+.+
T Consensus        43 ~~~~~vLDlgcG~-G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~------~d~~~~~~~~~~~~f  114 (189)
T 3p9n_A           43 LTGLAVLDLYAGS-GALGLEALS-RGAASVLFVESDQRSAAVIARNIEALGLSGATLRR------GAVAAVVAAGTTSPV  114 (189)
T ss_dssp             CTTCEEEEETCTT-CHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEE------SCHHHHHHHCCSSCC
T ss_pred             CCCCEEEEeCCCc-CHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEE------ccHHHHHhhccCCCc
Confidence            5788999998763 555555555 466589999999988877754    3432  2222      344444433323489


Q ss_pred             CEEEEecC--C-----hhhHHHHHH--hhhcCCceEEEec
Q 025101          144 DYCFECVG--L-----ASLVQEAYA--CCRKGWGKTIVLG  174 (258)
Q Consensus       144 d~v~d~~g--~-----~~~~~~~~~--~l~~~~G~~v~~g  174 (258)
                      |+|+-...  .     ...+..+.+  .|+|+ |.++.-.
T Consensus       115 D~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pg-G~l~~~~  153 (189)
T 3p9n_A          115 DLVLADPPYNVDSADVDAILAALGTNGWTREG-TVAVVER  153 (189)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHHHSSSCCTT-CEEEEEE
T ss_pred             cEEEECCCCCcchhhHHHHHHHHHhcCccCCC-eEEEEEe
Confidence            99985422  1     123556666  88998 9987654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.75  E-value=0.0046  Score=49.23  Aligned_cols=69  Identities=19%  Similarity=0.105  Sum_probs=47.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCCh
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      +|.|+|+|.+|...+..+.. |. +|+++++++++.+.+.+.|.. +.+ .    .+.   +     ...|+||.|+..+
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~g~~-~~~-~----~~~---~-----~~~D~vi~~v~~~   66 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEEFGS-EAV-P----LER---V-----AEARVIFTCLPTT   66 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHHHCC-EEC-C----GGG---G-----GGCSEEEECCSSH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHCCCc-ccC-H----HHH---H-----hCCCEEEEeCCCh
Confidence            58899999999988887777 98 899999999888877665543 222 1    111   0     1477777777765


Q ss_pred             hhHHH
Q 025101          154 SLVQE  158 (258)
Q Consensus       154 ~~~~~  158 (258)
                      ..+..
T Consensus        67 ~~~~~   71 (289)
T 2cvz_A           67 REVYE   71 (289)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            43333

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.75  E-value=0.034  Score=45.34  Aligned_cols=74  Identities=20%  Similarity=0.213  Sum_probs=49.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch----HHHHHhc-------CCceE-EcCCCCCCccHHHHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK----FEIGKRF-------GVTEF-VNSKNCGDKSVSQIIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~----~~~~~~~-------g~~~v-i~~~~~~~~~~~~~i~~  137 (258)
                      .+.+|||+|+ |.+|..+++.+...|. +|++++++...    .+.++..       ++..+ .|..+   .   +.+.+
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~---~~~~~   96 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRD---L---TTCEQ   96 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTC---H---HHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCC---H---HHHHH
Confidence            4689999997 9999999999988898 99999986543    2223322       22211 23322   2   23444


Q ss_pred             hcCCCCCEEEEecCC
Q 025101          138 MTDGGADYCFECVGL  152 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~  152 (258)
                      ... ++|+||.+.+.
T Consensus        97 ~~~-~~d~Vih~A~~  110 (351)
T 3ruf_A           97 VMK-GVDHVLHQAAL  110 (351)
T ss_dssp             HTT-TCSEEEECCCC
T ss_pred             Hhc-CCCEEEECCcc
Confidence            333 79999999874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.74  E-value=0.0064  Score=48.20  Aligned_cols=90  Identities=16%  Similarity=0.133  Sum_probs=62.2

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      .+|||+|+|.+|..+++.+...|+ +|+++++++++.+.+...++..+ .|..+   .+         -.++|+||.+.+
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d---~~---------~~~~d~vi~~a~   72 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLWPGEE---PS---------LDGVTHLLISTA   72 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEEESSSSC---CC---------CTTCCEEEECCC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEEEecccc---cc---------cCCCCEEEECCC
Confidence            589999999999999999988899 99999999988887777665433 22222   11         127999999886


Q ss_pred             Ch----hhHHHHHHhhhc--C-CceEEEecc
Q 025101          152 LA----SLVQEAYACCRK--G-WGKTIVLGV  175 (258)
Q Consensus       152 ~~----~~~~~~~~~l~~--~-~G~~v~~g~  175 (258)
                      ..    ......++.++.  . ..+++.++.
T Consensus        73 ~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           73 PDSGGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             CBTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             ccccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence            42    113344444433  1 157777764

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.74  E-value=0.0073  Score=49.49  Aligned_cols=75  Identities=20%  Similarity=0.193  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh-cC---Cce-EEcCCCCCCccHHHHHHHhcCCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR-FG---VTE-FVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~-~g---~~~-vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      ++++|||+|+ |.+|..+++.+... |..+|+++++++++.+.+.+ +.   +.. ..|..+   .   +.+.+... ++
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d---~---~~l~~~~~-~~   92 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRD---L---ERLNYALE-GV   92 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTC---H---HHHHHHTT-TC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCC---H---HHHHHHHh-cC
Confidence            5789999986 99999998888777 86589999999877665433 32   221 123333   2   23444333 69


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |+||.+.+.
T Consensus        93 D~Vih~Aa~  101 (344)
T 2gn4_A           93 DICIHAAAL  101 (344)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998874

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.74  E-value=0.018  Score=46.51  Aligned_cols=69  Identities=23%  Similarity=0.291  Sum_probs=50.0

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC--cchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVI--SEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~--~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .+|.|+|.|.+|...++.+...|..+|++.+++  +++.+.+++.|+.. .       .+..+.+.     ..|+||-|+
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~-~-------~~~~e~~~-----~aDvVi~~v   91 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSC-K-------ASVAEVAG-----ECDVIFSLV   91 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEE-C-------SCHHHHHH-----HCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEE-e-------CCHHHHHh-----cCCEEEEec
Confidence            589999999999998888887887579999986  57778888877532 1       12333232     367888877


Q ss_pred             CChh
Q 025101          151 GLAS  154 (258)
Q Consensus       151 g~~~  154 (258)
                      ....
T Consensus        92 p~~~   95 (312)
T 3qsg_A           92 TAQA   95 (312)
T ss_dssp             CTTT
T ss_pred             Cchh
Confidence            7654

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.74  E-value=0.0029  Score=49.51  Aligned_cols=80  Identities=20%  Similarity=0.156  Sum_probs=48.2

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEc-CCcchHHH----HHhcCCc-eE--EcCCCCCCccHHH---HHH
Q 025101           69 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEI----GKRFGVT-EF--VNSKNCGDKSVSQ---III  136 (258)
Q Consensus        69 ~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~-~~~~~~~~----~~~~g~~-~v--i~~~~~~~~~~~~---~i~  136 (258)
                      ..+++++||+|+ |++|..+++.+...|+ +|++++ ++.++.+.    +++.+.. .+  .|..+  .+++.+   .+.
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   86 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGD--WDSTKQAFDKVK   86 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCC--HHHHHHHHHHHH
Confidence            456889999986 8999999988888899 888876 45444332    2334433 22  23322  122222   232


Q ss_pred             HhcCCCCCEEEEecCC
Q 025101          137 DMTDGGADYCFECVGL  152 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~  152 (258)
                      +.. +++|++|.+.|.
T Consensus        87 ~~~-g~id~lv~~Ag~  101 (256)
T 3ezl_A           87 AEV-GEIDVLVNNAGI  101 (256)
T ss_dssp             HHT-CCEEEEEECCCC
T ss_pred             Hhc-CCCCEEEECCCC
Confidence            322 279999998873

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.74  E-value=0.0072  Score=48.47  Aligned_cols=67  Identities=22%  Similarity=0.177  Sum_probs=49.8

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+.. .       .+..    +...  .|+||-|+..
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~-------~~~~----~~~~--aDvvi~~vp~   80 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEAGATL-A-------DSVA----DVAA--ADLIHITVLD   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHTTCEE-C-------SSHH----HHTT--SSEEEECCSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCEE-c-------CCHH----HHHh--CCEEEEECCC
Confidence            579999999999999888888898 8999999999998888777531 1       1121    2221  6777777775


Q ss_pred             hh
Q 025101          153 AS  154 (258)
Q Consensus       153 ~~  154 (258)
                      +.
T Consensus        81 ~~   82 (296)
T 3qha_A           81 DA   82 (296)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.73  E-value=0.0013  Score=53.20  Aligned_cols=115  Identities=15%  Similarity=0.147  Sum_probs=70.9

Q ss_pred             hhcchhhhhhhhhhhhh--------cC-CCCCCEEEEEccC-HHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHhcCCc
Q 025101           50 CLLSCGVSTGVGAAWRT--------AN-VEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKF-EIGKRFGVT  118 (258)
Q Consensus        50 a~~~~~~~ta~~~l~~~--------~~-~~~g~~vlI~G~g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~-~~~~~~g~~  118 (258)
                      ..+||....+...+.+.        .+ --.|.+++|+|+| .+|..+++++...|+ +|++++++..+. +...+++..
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~~  224 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKLN  224 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSCC
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhhh
Confidence            45565555554433331        23 2378999999998 569999999999998 899988874432 222223321


Q ss_pred             -eEE---c-CCCCCCccHHHHHHHhcCCCCCEEEEecCChhh-HHHHHHhhhcCCceEEEeccc
Q 025101          119 -EFV---N-SKNCGDKSVSQIIIDMTDGGADYCFECVGLASL-VQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       119 -~vi---~-~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~  176 (258)
                       +..   . .+.   .++.+.++     .+|+||.++|.+.. +.  -+.++++ ..++.+|..
T Consensus       225 ~~~~t~~~~t~~---~~L~e~l~-----~ADIVIsAtg~p~~vI~--~e~vk~G-avVIDVgi~  277 (320)
T 1edz_A          225 KHHVEDLGEYSE---DLLKKCSL-----DSDVVITGVPSENYKFP--TEYIKEG-AVCINFACT  277 (320)
T ss_dssp             CCEEEEEEECCH---HHHHHHHH-----HCSEEEECCCCTTCCBC--TTTSCTT-EEEEECSSS
T ss_pred             cccccccccccH---hHHHHHhc-----cCCEEEECCCCCcceeC--HHHcCCC-eEEEEcCCC
Confidence             110   0 101   23444444     49999999998762 22  2336787 888888864

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=96.72  E-value=0.0038  Score=50.75  Aligned_cols=133  Identities=12%  Similarity=0.091  Sum_probs=76.0

Q ss_pred             EEEEEccCHHHH-HHHHHHHHc-CCCeEEEEcCCcchHHH-HHhcCCce-EEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           74 TVVIFGLGSIGL-AVAEGARLC-GATRIIGVDVISEKFEI-GKRFGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        74 ~vlI~G~g~~G~-~a~~l~~~~-g~~~v~~~~~~~~~~~~-~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +|.|+|+|.+|. ..+..++.. +. ++++.++++++.+. ++++|+.. ..+..        +.+    ...+|+|+.|
T Consensus         4 ~igiIG~G~ig~~~~~~~l~~~~~~-~l~v~d~~~~~~~~~a~~~g~~~~~~~~~--------~~l----~~~~D~V~i~   70 (323)
T 1xea_A            4 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCTDYR--------DVL----QYGVDAVMIH   70 (323)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCSSTT--------GGG----GGCCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHcCCCccccCHH--------HHh----hcCCCEEEEE
Confidence            688999999997 466655543 66 66677888877654 45678643 22211        112    1279999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEecccCCCCceee-chHHH-HhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFEV-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      +......+.+..+++.  |+-+++........... ....+ -.++..+.-..  ...+...++.+.+++.+|.+-
T Consensus        71 tp~~~h~~~~~~al~~--Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~~~~i~~g~iG  142 (323)
T 1xea_A           71 AATDVHSTLAAFFLHL--GIPTFVDKPLAASAQECENLYELAEKHHQPLYVGF--NRRHIPLYNQHLSELAQQECG  142 (323)
T ss_dssp             SCGGGHHHHHHHHHHT--TCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEEC--GGGCCHHHHHHCHHHHHTSCT
T ss_pred             CCchhHHHHHHHHHHC--CCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEee--ccccCHHHHHHHHHHhcCCcC
Confidence            9987767777777775  55444542211000000 01111 22344443222  222345677788888888653

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.72  E-value=0.0053  Score=49.30  Aligned_cols=96  Identities=16%  Similarity=0.145  Sum_probs=63.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC--------Cc--eEEcCCCCCCccHHHHHHHhc
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--------VT--EFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g--------~~--~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ..+.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.-        ..  .++.      .+..+.+.. .
T Consensus        89 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~l~~-~  160 (296)
T 1inl_A           89 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI------ANGAEYVRK-F  160 (296)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHGGG-C
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE------CcHHHHHhh-C
Confidence            3568999999874 667778887766559999999998888876521        11  1221      233333322 2


Q ss_pred             CCCCCEEE-EecCC----------hhhHHHHHHhhhcCCceEEEec
Q 025101          140 DGGADYCF-ECVGL----------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~~~d~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .+.||+|+ |....          ...+..+.+.|+|+ |.++...
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  205 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAET  205 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            33799998 43211          34478889999999 9988763

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.71  E-value=0.0079  Score=47.61  Aligned_cols=95  Identities=19%  Similarity=0.268  Sum_probs=64.9

Q ss_pred             hcchhhhhhhhhhhhhcC-CCCCCEEEEEccC-HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCC
Q 025101           51 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  128 (258)
Q Consensus        51 ~~~~~~~ta~~~l~~~~~-~~~g~~vlI~G~g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  128 (258)
                      .+||........| +... --.|.+++|+|.| .+|.-+++++...|+ +|++..+..                      
T Consensus       138 ~~PcTp~gi~~ll-~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t----------------------  193 (288)
T 1b0a_A          138 LRPCTPRGIVTLL-ERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT----------------------  193 (288)
T ss_dssp             SCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC----------------------
T ss_pred             CCCCcHHHHHHHH-HHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCCc----------------------
Confidence            3454433333333 3333 3479999999987 579999999999999 788774222                      


Q ss_pred             ccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          129 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       129 ~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      .++.+.++     .+|+||.++|.+..+  --+.++++ ..++.+|...
T Consensus       194 ~~L~~~~~-----~ADIVI~Avg~p~lI--~~~~vk~G-avVIDVgi~r  234 (288)
T 1b0a_A          194 KNLRHHVE-----NADLLIVAVGKPGFI--PGDWIKEG-AIVIDVGINR  234 (288)
T ss_dssp             SCHHHHHH-----HCSEEEECSCCTTCB--CTTTSCTT-CEEEECCCEE
T ss_pred             hhHHHHhc-----cCCEEEECCCCcCcC--CHHHcCCC-cEEEEccCCc
Confidence            34555554     499999999988632  22346888 8999998653

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.71  E-value=0.0025  Score=49.49  Aligned_cols=74  Identities=18%  Similarity=0.096  Sum_probs=45.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHH-cCCCeEEEEcCCcc-hHHHHHhcCCceEEcCCCCCCccHH-HHHHHhcCCCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSVS-QIIIDMTDGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~-~g~~~v~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~-~~i~~~~~~~~d~v  146 (258)
                      +++++||+|+ |++|.++++.+.. .|+ +|+.++++++ ..+.+.    ....|-.+   .+-. +.+.....+++|++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~-~v~~~~~~~~~~~~~~~----~~~~Dv~~---~~~v~~~~~~~~~~~id~l   74 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH-TVINIDIQQSFSAENLK----FIKADLTK---QQDITNVLDIIKNVSFDGI   74 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE-EEEEEESSCCCCCTTEE----EEECCTTC---HHHHHHHHHHTTTCCEEEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc-EEEEeccccccccccce----EEecCcCC---HHHHHHHHHHHHhCCCCEE
Confidence            4678999987 8999998877765 677 8888887765 221110    01123333   3333 33322332389999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      +++.|.
T Consensus        75 v~nAg~   80 (244)
T 4e4y_A           75 FLNAGI   80 (244)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            998885

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.71  E-value=0.0048  Score=50.24  Aligned_cols=78  Identities=21%  Similarity=0.194  Sum_probs=48.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHh----cCCc-eEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKR----FGVT-EFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~-~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      .+.+|||+|+ |.+|..+++.+...|+ +|++++++.++.+. .++    .+.. .++. -+..+.+..+.+.+.  +++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~--~~~   79 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSKREAIARIEKITGKTPAFHE-TDVSDERALARIFDA--HPI   79 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSCTHHHHHHHHHHSCCCEEEC-CCTTCHHHHHHHHHH--SCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcchHHHHHHHHhhcCCCceEEE-eecCCHHHHHHHHhc--cCC
Confidence            4679999986 9999999999988899 89999887654322 221    1221 2221 121113322222221  379


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |+||.+.+.
T Consensus        80 d~vih~A~~   88 (341)
T 3enk_A           80 TAAIHFAAL   88 (341)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECccc
Confidence            999998874

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=96.71  E-value=0.0084  Score=45.48  Aligned_cols=100  Identities=14%  Similarity=0.157  Sum_probs=62.2

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHH----HHHhcCCceEEcCCCCCCccHHHHHHHhcCCC
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE----IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~----~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      ..+++|++||=+|+|+ |..+..+++..|..+|++++.+++..+    .+++...-..+..+.   .+... .... .+.
T Consensus        53 ~~~~~g~~VLDlGcGt-G~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~---~~~~~-~~~~-~~~  126 (210)
T 1nt2_A           53 LKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPWK-YSGI-VEK  126 (210)
T ss_dssp             CCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGGG-TTTT-CCC
T ss_pred             cCCCCCCEEEEECCcC-CHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCC---CCchh-hccc-ccc
Confidence            4578899999999974 778888888775338999999987543    333332111221111   11100 0011 137


Q ss_pred             CCEEEEecCChh----hHHHHHHhhhcCCceEEEe
Q 025101          143 ADYCFECVGLAS----LVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       143 ~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~  173 (258)
                      +|+|+-....+.    .+..+.+.|+|+ |+++..
T Consensus       127 fD~V~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~i~  160 (210)
T 1nt2_A          127 VDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIM  160 (210)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             eeEEEEeccChhHHHHHHHHHHHHhCCC-CEEEEE
Confidence            999986554332    257788999999 999876

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=96.71  E-value=0.0029  Score=48.32  Aligned_cols=100  Identities=21%  Similarity=0.235  Sum_probs=62.1

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcC-
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD-  140 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~-  140 (258)
                      ...++.+||-+|+|. |..++.+++.+  +. +|++++.+++..+.+++    .|...-+....   .+..+.+..... 
T Consensus        55 ~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~l~~~~~~  129 (221)
T 3u81_A           55 REYSPSLVLELGAYC-GYSAVRMARLLQPGA-RLLTMEINPDCAAITQQMLNFAGLQDKVTILN---GASQDLIPQLKKK  129 (221)
T ss_dssp             HHHCCSEEEEECCTT-SHHHHHHHTTSCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHGGGTTTT
T ss_pred             HhcCCCEEEEECCCC-CHHHHHHHHhCCCCC-EEEEEeCChHHHHHHHHHHHHcCCCCceEEEE---CCHHHHHHHHHHh
Confidence            345788999999874 77888888865  55 99999999988877765    45321011111   334443433331 


Q ss_pred             ---CCCCEEEEecCChh------hHHHHHHhhhcCCceEEEec
Q 025101          141 ---GGADYCFECVGLAS------LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ---~~~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g  174 (258)
                         +.||+||-......      .+... +.|+|+ |.++.-.
T Consensus       130 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lkpg-G~lv~~~  170 (221)
T 3u81_A          130 YDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKG-TVLLADN  170 (221)
T ss_dssp             SCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTT-CEEEESC
T ss_pred             cCCCceEEEEEcCCcccchHHHHHHHhc-cccCCC-eEEEEeC
Confidence               37999984332221      12222 789999 9887544

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.71  E-value=0.0057  Score=48.56  Aligned_cols=95  Identities=14%  Similarity=0.105  Sum_probs=65.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc------CC--c--eEEcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF------GV--T--EFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~------g~--~--~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      .+.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.      +.  .  .++.      .+..+.+.. .+
T Consensus        75 ~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~------~D~~~~l~~-~~  146 (275)
T 1iy9_A           75 NPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV------DDGFMHIAK-SE  146 (275)
T ss_dssp             SCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE------SCSHHHHHT-CC
T ss_pred             CCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE------CcHHHHHhh-CC
Confidence            568999999874 66777888776656999999999888888762      11  1  2222      233333433 23


Q ss_pred             CCCCEEEEecCC----------hhhHHHHHHhhhcCCceEEEec
Q 025101          141 GGADYCFECVGL----------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.||+|+-....          ...+..+.+.|+|+ |.++.-.
T Consensus       147 ~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pg-G~lv~~~  189 (275)
T 1iy9_A          147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT  189 (275)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            479999843322          34588999999999 9988763

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=96.71  E-value=0.0061  Score=46.34  Aligned_cols=98  Identities=18%  Similarity=0.199  Sum_probs=66.9

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHh--cCC-CC
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM--TDG-GA  143 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~--~~~-~~  143 (258)
                      ....++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++.+...++..      ++.+ +...  ..+ .|
T Consensus        48 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~~~~~f  117 (227)
T 3e8s_A           48 ILGRQPERVLDLGCGE-GWLLRALADR-GI-EAVGVDGDRTLVDAARAAGAGEVHLA------SYAQ-LAEAKVPVGKDY  117 (227)
T ss_dssp             HHHTCCSEEEEETCTT-CHHHHHHHTT-TC-EEEEEESCHHHHHHHHHTCSSCEEEC------CHHH-HHTTCSCCCCCE
T ss_pred             hhcCCCCEEEEeCCCC-CHHHHHHHHC-CC-EEEEEcCCHHHHHHHHHhcccccchh------hHHh-hcccccccCCCc
Confidence            3445679999999874 6777777766 87 89999999999998888753333321      2222 2111  223 59


Q ss_pred             CEEEEecC-----ChhhHHHHHHhhhcCCceEEEecc
Q 025101          144 DYCFECVG-----LASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       144 d~v~d~~g-----~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      |+|+....     ....+..+.+.|+|+ |.++....
T Consensus       118 D~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~~  153 (227)
T 3e8s_A          118 DLICANFALLHQDIIELLSAMRTLLVPG-GALVIQTL  153 (227)
T ss_dssp             EEEEEESCCCSSCCHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             cEEEECchhhhhhHHHHHHHHHHHhCCC-eEEEEEec
Confidence            99986432     234588999999999 99987653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=96.70  E-value=0.0077  Score=45.71  Aligned_cols=97  Identities=16%  Similarity=0.146  Sum_probs=64.9

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC--ceEEcCCCCCCccHHHHHHHhcCCC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      ......++.+||-+|+|. |..+..+++. |. ++++++.+++..+.+++.-.  ..++..+-   .++.     . .+.
T Consensus        39 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~---~~~~-----~-~~~  106 (220)
T 3hnr_A           39 EDVVNKSFGNVLEFGVGT-GNLTNKLLLA-GR-TVYGIEPSREMRMIAKEKLPKEFSITEGDF---LSFE-----V-PTS  106 (220)
T ss_dssp             HHHHHTCCSEEEEECCTT-SHHHHHHHHT-TC-EEEEECSCHHHHHHHHHHSCTTCCEESCCS---SSCC-----C-CSC
T ss_pred             HHhhccCCCeEEEeCCCC-CHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHhCCCceEEEeCCh---hhcC-----C-CCC
Confidence            334455889999999874 7777777775 77 99999999998888876421  12322221   1110     0 137


Q ss_pred             CCEEEEecCC-----hh---hHHHHHHhhhcCCceEEEec
Q 025101          143 ADYCFECVGL-----AS---LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       143 ~d~v~d~~g~-----~~---~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +|+|+-...-     +.   .+..+.+.|+|+ |.+++..
T Consensus       107 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  145 (220)
T 3hnr_A          107 IDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG-GKIVFAD  145 (220)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             eEEEEECcchhcCChHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            9999864322     11   578899999999 9988764

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.70  E-value=0.0035  Score=48.41  Aligned_cols=101  Identities=16%  Similarity=0.272  Sum_probs=66.7

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc---eEEcCCCCCCccHHHHHHHhc
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT---EFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~---~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      +.......++.+||-+|+|. |..+..+++. |..+|++++.+++..+.+++....   .++.. +     ..+ + ...
T Consensus        35 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-d-----~~~-~-~~~  104 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERA-D-----LDK-L-HLP  104 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEEC-C-----GGG-C-CCC
T ss_pred             HHHhccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEc-C-----hhh-c-cCC
Confidence            34455566889999999874 7777777775 655899999999988888775421   12211 1     111 0 011


Q ss_pred             CCCCCEEEEecCC------hhhHHHHHHhhhcCCceEEEec
Q 025101          140 DGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .+.+|+|+....-      ...+..+.+.|+|+ |++++..
T Consensus       105 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~  144 (243)
T 3bkw_A          105 QDSFDLAYSSLALHYVEDVARLFRTVHQALSPG-GHFVFST  144 (243)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CCCceEEEEeccccccchHHHHHHHHHHhcCcC-cEEEEEe
Confidence            2379999864332      33578888999999 9988654

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.69  E-value=0.014  Score=47.55  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=31.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .+.+|+|+|+|++|..+++.+...|..+++.++...
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            478999999999999999999999998999887643

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.69  E-value=0.012  Score=48.63  Aligned_cols=87  Identities=26%  Similarity=0.372  Sum_probs=58.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.+++. +.+.+.+.|+..         .++.+.+.     ..|+|+-++
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~~~---------~~l~ell~-----~aDvV~l~~  238 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGVEP---------ASLEDVLT-----KSDFIFVVA  238 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTCEE---------CCHHHHHH-----SCSEEEECS
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCeee---------CCHHHHHh-----cCCEEEEcC
Confidence            37899999999999999999999999 999999875 445555666531         12322222     477777665


Q ss_pred             CCh-h----hHHHHHHhhhcCCceEEEec
Q 025101          151 GLA-S----LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~~-~----~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ... .    .-...+..++++ +.++.++
T Consensus       239 Plt~~T~~li~~~~l~~mk~g-ailIN~a  266 (365)
T 4hy3_A          239 AVTSENKRFLGAEAFSSMRRG-AAFILLS  266 (365)
T ss_dssp             CSSCC---CCCHHHHHTSCTT-CEEEECS
T ss_pred             cCCHHHHhhcCHHHHhcCCCC-cEEEECc
Confidence            532 1    113555667776 7776665

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=96.68  E-value=0.0072  Score=50.89  Aligned_cols=101  Identities=17%  Similarity=0.173  Sum_probs=69.7

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      ....+.++.+||-+|+|. |..+..+++ .|. +|++++.+++..+.+++.+.......-.   .+..+.+. ...+.||
T Consensus       101 ~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~---~~~~~~l~-~~~~~fD  173 (416)
T 4e2x_A          101 ATELTGPDPFIVEIGCND-GIMLRTIQE-AGV-RHLGFEPSSGVAAKAREKGIRVRTDFFE---KATADDVR-RTEGPAN  173 (416)
T ss_dssp             HTTTCSSSCEEEEETCTT-TTTHHHHHH-TTC-EEEEECCCHHHHHHHHTTTCCEECSCCS---HHHHHHHH-HHHCCEE
T ss_pred             HHhCCCCCCEEEEecCCC-CHHHHHHHH-cCC-cEEEECCCHHHHHHHHHcCCCcceeeec---hhhHhhcc-cCCCCEE
Confidence            445667899999999874 666666666 477 9999999999999998887654432222   22222222 1234799


Q ss_pred             EEEEecCC------hhhHHHHHHhhhcCCceEEEe
Q 025101          145 YCFECVGL------ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       145 ~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      +|+-...-      ...+..+.+.|+|+ |.+++.
T Consensus       174 ~I~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~  207 (416)
T 4e2x_A          174 VIYAANTLCHIPYVQSVLEGVDALLAPD-GVFVFE  207 (416)
T ss_dssp             EEEEESCGGGCTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEECChHHhcCCHHHHHHHHHHHcCCC-eEEEEE
Confidence            99864432      23578899999999 998864

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=96.68  E-value=0.012  Score=50.85  Aligned_cols=80  Identities=18%  Similarity=0.267  Sum_probs=50.8

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch-------HHHHHhcCCceEEcCCCCCCccHHH-HHHHhcCC-C
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FEIGKRFGVTEFVNSKNCGDKSVSQ-IIIDMTDG-G  142 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~-------~~~~~~~g~~~vi~~~~~~~~~~~~-~i~~~~~~-~  142 (258)
                      +++||+|+ |++|..+++.+...|+.+|+.+.++...       .+.+++.|....+-.-+.++.+-.+ .+.+.... +
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g~  319 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDAP  319 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTSC
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            89999986 9999999888888898778888876422       1234456754322222222233333 33333332 7


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|.||.+.|.
T Consensus       320 ld~vVh~AGv  329 (496)
T 3mje_A          320 LTAVFHSAGV  329 (496)
T ss_dssp             EEEEEECCCC
T ss_pred             CeEEEECCcc
Confidence            9999998874

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.68  E-value=0.0043  Score=49.50  Aligned_cols=97  Identities=12%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CC-------c--eEEcCCCCCCccHHHHHHHh
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV-------T--EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~-------~--~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ..++++||++|+|. |..+..+++..+..+|++++.+++..+.+++. ..       .  .++.      .+..+.+...
T Consensus        76 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~l~~~  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI------EDASKFLENV  148 (283)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE------SCHHHHHHHC
T ss_pred             CCCCCeEEEEeCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEE------CChHHHHHhC
Confidence            34678999999864 66777777765545999999999988888763 21       1  1221      3344444432


Q ss_pred             cCCCCCEEEE-ecC---C------hhhHHHHHHhhhcCCceEEEec
Q 025101          139 TDGGADYCFE-CVG---L------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ~~~~~d~v~d-~~g---~------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                       .+.+|+|+- ...   .      ...+..+.+.|+|+ |.++...
T Consensus       149 -~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~~  192 (283)
T 2i7c_A          149 -TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN-GYCVAQC  192 (283)
T ss_dssp             -CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             -CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEC
Confidence             347999984 321   1      24577889999999 9998664

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.67  E-value=0.018  Score=46.60  Aligned_cols=134  Identities=17%  Similarity=0.205  Sum_probs=79.9

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEE-EcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHh--cCCCCCEEEE
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM--TDGGADYCFE  148 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~-~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~--~~~~~d~v~d  148 (258)
                      -++.|+|+ |.+|...+..++..+. ++++ .++++++....+.++...++..-    +++.+.+.++  ....+|+|+.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~-~lvav~d~~~~~~~~~~~~~~~~~~~~~----~~ll~~~~~l~~~~~~vD~V~I   78 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGG-VLVASLDPATNVGLVDSFFPEAEFFTEP----EAFEAYLEDLRDRGEGVDYLSI   78 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTC-EEEEEECSSCCCGGGGGTCTTCEEESCH----HHHHHHHHHHHHTTCCCSEEEE
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCC-EEEEEEcCCHHHHHHHhhCCCCceeCCH----HHHHHHhhhhcccCCCCcEEEE
Confidence            37899998 6789888888887787 5555 45666664444445544444211    2222211222  2338999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHH---H----HhcCceEEecccCCCCCCCcHHHHHHHHHcC
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE---V----LHSGKILMGSLFGGLKAKSDIPILLKRYMDK  220 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  220 (258)
                      |+......+.+..+++.  |+-+++...     +..+...   +    -.++..+.-..  +..+...++.+.+++.+|
T Consensus        79 ~tP~~~H~~~~~~al~a--GkhVl~EKP-----la~~~~ea~~l~~~a~~~g~~~~v~~--~~R~~p~~~~~k~~i~~g  148 (312)
T 3o9z_A           79 ASPNHLHYPQIRMALRL--GANALSEKP-----LVLWPEEIARLKELEARTGRRVYTVL--QLRVHPSLLALKERLGQE  148 (312)
T ss_dssp             CSCGGGHHHHHHHHHHT--TCEEEECSS-----SCSCHHHHHHHHHHHHHHCCCEEECC--GGGGCHHHHHHHHHHHTC
T ss_pred             CCCchhhHHHHHHHHHC--CCeEEEECC-----CCCCHHHHHHHHHHHHHcCCEEEEEe--ehhcCHHHHHHHHHHHcC
Confidence            99988878888888886  555667532     2222221   1    22344443222  223345677888888887

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.67  E-value=0.006  Score=48.85  Aligned_cols=92  Identities=14%  Similarity=0.172  Sum_probs=57.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc-------chHHHHH---hcCCceE-EcCCCCCCccHHHHHHHhc
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-------EKFEIGK---RFGVTEF-VNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~-------~~~~~~~---~~g~~~v-i~~~~~~~~~~~~~i~~~~  139 (258)
                      +.+|||+|+ |.+|..+++.+...|. +|++++|++       ++.+.++   ..|+..+ .|..+   .   +.+.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~---~~l~~~~   74 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND---H---ETLVKAI   74 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTC---H---HHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCC---H---HHHHHHH
Confidence            467999997 9999999988887898 899999886       4444333   3455322 23333   2   2233333


Q ss_pred             CCCCCEEEEecCCh--hhHHHHHHhhhcC--CceEE
Q 025101          140 DGGADYCFECVGLA--SLVQEAYACCRKG--WGKTI  171 (258)
Q Consensus       140 ~~~~d~v~d~~g~~--~~~~~~~~~l~~~--~G~~v  171 (258)
                      . ++|+||.+.+..  .....+++.+...  -++++
T Consensus        75 ~-~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           75 K-QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             T-TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             h-CCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence            3 699999998853  2234455555443  14665

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.67  E-value=0.011  Score=48.34  Aligned_cols=68  Identities=21%  Similarity=0.180  Sum_probs=51.2

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~-~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      +.+|.|+|+|.+|.+.++.++..|. +|++.++++++ .+.+++.|.. +.   +     ..+.+.     ..|+|+-|+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~~-~~---~-----~~e~~~-----~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGLK-VA---D-----VKTAVA-----AADVVMILT   80 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTCE-EE---C-----HHHHHH-----TCSEEEECS
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCCE-Ec---c-----HHHHHh-----cCCEEEEeC
Confidence            4689999999999999999998998 89998888766 6777778863 22   1     222222     588898888


Q ss_pred             CChh
Q 025101          151 GLAS  154 (258)
Q Consensus       151 g~~~  154 (258)
                      ....
T Consensus        81 p~~~   84 (338)
T 1np3_A           81 PDEF   84 (338)
T ss_dssp             CHHH
T ss_pred             CcHH
Confidence            8655

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.66  E-value=0.012  Score=45.97  Aligned_cols=85  Identities=13%  Similarity=0.097  Sum_probs=60.0

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      .+|.|+|+|.+|...+..+...|. .|.+.++++++.+.+. ++|...   .     .+..+.+.     ..|+||.|+.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~g~~~---~-----~~~~~~~~-----~~D~Vi~~v~   69 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPY---A-----MSHQDLID-----QVDLVILGIK   69 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCB---C-----SSHHHHHH-----TCSEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHHcCCEe---e-----CCHHHHHh-----cCCEEEEEeC
Confidence            478999999999998888877887 8999999988877665 457531   1     22333332     5899999998


Q ss_pred             ChhhHHHHHHhhhcCCceEEEe
Q 025101          152 LASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       152 ~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      ... ....+..++++ ..++..
T Consensus        70 ~~~-~~~v~~~l~~~-~~vv~~   89 (259)
T 2ahr_A           70 PQL-FETVLKPLHFK-QPIISM   89 (259)
T ss_dssp             GGG-HHHHHTTSCCC-SCEEEC
T ss_pred             cHh-HHHHHHHhccC-CEEEEe
Confidence            544 66677667655 544444

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.65  E-value=0.0058  Score=47.60  Aligned_cols=97  Identities=16%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHhc
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ..+.++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++    .|..   .++..+-   .++     ...
T Consensus        42 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~-----~~~  111 (257)
T 3f4k_A           42 NELTDDAKIADIGCGT-GGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM---DNL-----PFQ  111 (257)
T ss_dssp             CCCCTTCEEEEETCTT-SHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC-----SSC
T ss_pred             hcCCCCCeEEEeCCCC-CHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhC-----CCC
Confidence            4677899999999985 8889999998877 99999999988877654    3422   2222111   111     011


Q ss_pred             CCCCCEEEEec-----CChhhHHHHHHhhhcCCceEEEec
Q 025101          140 DGGADYCFECV-----GLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~~~d~v~d~~-----g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .+.||+|+-..     +....+..+.+.|+|+ |+++...
T Consensus       112 ~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~  150 (257)
T 3f4k_A          112 NEELDLIWSEGAIYNIGFERGMNEWSKYLKKG-GFIAVSE  150 (257)
T ss_dssp             TTCEEEEEEESCSCCCCHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred             CCCEEEEEecChHhhcCHHHHHHHHHHHcCCC-cEEEEEE
Confidence            23799997532     2244588899999999 9988775

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.65  E-value=0.0098  Score=47.92  Aligned_cols=97  Identities=13%  Similarity=0.159  Sum_probs=64.9

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC------C--c--eEEcCCCCCCccHHHHHHHh
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG------V--T--EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g------~--~--~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ...+.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.-      .  .  .++.      .+..+.+.. 
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~------~Da~~~l~~-  164 (304)
T 2o07_A           93 HPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV------GDGFEFMKQ-  164 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHT-
T ss_pred             CCCCCEEEEECCCc-hHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE------CcHHHHHhh-
Confidence            35678999999874 777778887655459999999998888877631      1  1  2221      334443433 


Q ss_pred             cCCCCCEEE-EecC---------ChhhHHHHHHhhhcCCceEEEec
Q 025101          139 TDGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ~~~~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..+.||+|| |...         ....+..+.+.|+|+ |.++.-.
T Consensus       165 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  209 (304)
T 2o07_A          165 NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQG  209 (304)
T ss_dssp             CSSCEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCC-eEEEEec
Confidence            234799998 4332         123478899999999 9988654

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=96.65  E-value=0.0069  Score=50.46  Aligned_cols=81  Identities=19%  Similarity=0.272  Sum_probs=50.7

Q ss_pred             cCC-CCCCEEEEEcc-CHHHHHHHHHHHH-cCCCeEEEEcCCcch----------------HHHHHhcCCce-EE--cCC
Q 025101           67 ANV-EVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEK----------------FEIGKRFGVTE-FV--NSK  124 (258)
Q Consensus        67 ~~~-~~g~~vlI~G~-g~~G~~a~~l~~~-~g~~~v~~~~~~~~~----------------~~~~~~~g~~~-vi--~~~  124 (258)
                      ..+ ..++++||+|+ +++|++.+..+.. .|+ +|++++++.+.                .+.+++.|... .+  |-.
T Consensus        41 ~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvt  119 (405)
T 3zu3_A           41 GPIANGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAF  119 (405)
T ss_dssp             CCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred             CCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCC
Confidence            344 45678899986 7999998877777 899 89988765433                12344556432 22  332


Q ss_pred             CCCCccHH----HHHHHhcCCCCCEEEEecCC
Q 025101          125 NCGDKSVS----QIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus       125 ~~~~~~~~----~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +   ++-.    +.+.+.. |.+|+++++.|.
T Consensus       120 d---~~~v~~~v~~i~~~~-G~IDiLVNNAG~  147 (405)
T 3zu3_A          120 S---DEIKQLTIDAIKQDL-GQVDQVIYSLAS  147 (405)
T ss_dssp             S---HHHHHHHHHHHHHHT-SCEEEEEECCCC
T ss_pred             C---HHHHHHHHHHHHHHc-CCCCEEEEcCcc
Confidence            2   3322    3333333 379999998875

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.65  E-value=0.0022  Score=50.61  Aligned_cols=70  Identities=13%  Similarity=0.086  Sum_probs=47.2

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce-EEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +++|||+|+ |.+|..+++.+...|+ +|+++++++.+.+   ..++.. ..|-.+   .+   .+.+... ++|+||.+
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~~~~~---~~~~~~~~~Dl~d---~~---~~~~~~~-~~D~vi~~   71 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPLDPA---GPNEECVQCDLAD---AN---AVNAMVA-GCDGIVHL   71 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSCCCCC---CTTEEEEECCTTC---HH---HHHHHHT-TCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCCcccc---CCCCEEEEcCCCC---HH---HHHHHHc-CCCEEEEC
Confidence            468999986 9999999988888898 9999999876543   111211 123322   33   2333332 69999998


Q ss_pred             cCC
Q 025101          150 VGL  152 (258)
Q Consensus       150 ~g~  152 (258)
                      .|.
T Consensus        72 Ag~   74 (267)
T 3rft_A           72 GGI   74 (267)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	1e-39
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	1e-37
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	4e-35
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	1e-32
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	3e-32
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	7e-32
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	1e-30
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	3e-18
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	1e-13
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	6e-13
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	9e-12
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	3e-11
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	1e-09
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	3e-09
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	4e-09
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	9e-09
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	2e-07
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	3e-07
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	4e-07
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	6e-07
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	8e-07
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	3e-06
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	3e-05
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	4e-04
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	0.002
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	0.003

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  133 bits (335), Expect = 1e-39
 Identities = 68/177 (38%), Positives = 106/177 (59%), Gaps = 2/177 (1%)

Query: 44  VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 103
            PP + CL+ CG STG GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D
Sbjct: 2   APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61

Query: 104 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 163
           +  +KFE     G TE ++ K+   K +S+++ +MT     Y FE +G    + +A A C
Sbjct: 62  LNKDKFEKAMAVGATECISPKD-STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASC 120

Query: 164 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK 220
              +G ++V+GV      L+     +L +G+   G +FGGLK++ D+P L+  ++ K
Sbjct: 121 HMNYGTSVVVGVPPSAKMLTYDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAK 176

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  128 bits (323), Expect = 1e-37
 Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 3/176 (1%)

Query: 46  PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 105
           P  +CL+ CG +TG GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV   
Sbjct: 2   PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH 61

Query: 106 SEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK 165
            +KF      G TE +N K+  DK + ++I + T+GG DY  EC G    +  A      
Sbjct: 62  KDKFPKAIELGATECLNPKD-YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC 120

Query: 166 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 221
           G G T+VLG+  P  +L L    +L +G+ L GS+FGG K + ++  L+  YM K+
Sbjct: 121 GSGVTVVLGLASPNERLPLDPL-LLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKK 174

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  122 bits (305), Expect = 4e-35
 Identities = 68/177 (38%), Positives = 108/177 (61%), Gaps = 2/177 (1%)

Query: 45  PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 104
           P  + CL+ CG STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+
Sbjct: 2   PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI 61

Query: 105 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 164
             +KF   K  G TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC+
Sbjct: 62  NKDKFAKAKEVGATECVNPQD-YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQ 120

Query: 165 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 221
           + +G ++++G   P SQ    +  +L SG+   G++FGG K+K  +P L+  +M K+
Sbjct: 121 EAYGVSVIVG-VPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKK 176

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  115 bits (288), Expect = 1e-32
 Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 4/177 (2%)

Query: 45  PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 104
              R CL+ CG S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI 61

Query: 105 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 164
             EKF   K  G T+ +N +   DK V  +I ++T GG DY  +C G A  ++ A  C  
Sbjct: 62  NGEKFPKAKALGATDCLNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTV 120

Query: 165 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 221
            GWG   V+G      ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+
Sbjct: 121 LGWGSCTVVGA--KVDEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKK 174

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  114 bits (286), Expect = 3e-32
 Identities = 78/177 (44%), Positives = 114/177 (64%), Gaps = 2/177 (1%)

Query: 45  PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 104
           P ++ CLL CG+STG GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+
Sbjct: 2   PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI 61

Query: 105 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 164
             +KF   K FG TE +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C 
Sbjct: 62  NKDKFARAKEFGATECINPQD-FSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH 120

Query: 165 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 221
           KGWG ++V+GV   G +++   F  L +G+   G+ FGG K+   +P L+  YM K+
Sbjct: 121 KGWGVSVVVGVAASGEEIATRPF-QLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKK 176

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score =  113 bits (283), Expect = 7e-32
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 44  VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 103
           VP      L CG+ TG GA      V   S+ V +G G++GL+    A++CGA+ II VD
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD 60

Query: 104 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 163
           ++  + E+ K+ G T  +NSK    +     I ++TDGG ++  E  G   ++++     
Sbjct: 61  IVESRLELAKQLGATHVINSK---TQDPVAAIKEITDGGVNFALESTGSPEILKQGVDAL 117

Query: 164 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 221
               GK  V+G  Q G+       ++L  GK ++G + G    K  IP L++ Y   +
Sbjct: 118 GI-LGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGK 174

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  110 bits (274), Expect = 1e-30
 Identities = 77/177 (43%), Positives = 107/177 (60%), Gaps = 3/177 (1%)

Query: 45  PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 104
           P +  CLL CGVSTG GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+
Sbjct: 2   PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL 61

Query: 105 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 164
             +KFE  K FG T+FVN  +   + +SQ++  MT+GG D+  ECVG   +++ A   C 
Sbjct: 62  NPDKFEKAKVFGATDFVNPND-HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCL 120

Query: 165 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 221
           KGWG ++++G          +    L +G+   GS+FGG K K  +P ++K Y+DK+
Sbjct: 121 KGWGVSVLVGW--TDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKK 175

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 77.7 bits (190), Expect = 3e-18
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 44  VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 103
           +P   A +++  ++TG   A   A++E+GS+VV+ G+G++GL    GA+L GA RIIGV 
Sbjct: 1   MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 59

Query: 104 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 163
                 E  K +G T+ +N          Q++      G D      G +  + +A    
Sbjct: 60  SRPICVEAAKFYGATDILN--YKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMV 117

Query: 164 RKGWGKTIVLGVDQPGSQLSLS--SFEVLHSGKILMGSLFGGLKAKSDIPILL 214
           + G G    +     G  L +    +    + K + G L  G + +++    +
Sbjct: 118 KPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAERLRDM 169

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 65.6 bits (159), Expect = 1e-13
 Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 21/192 (10%)

Query: 49  ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 108
              LS  + TG   A   A V  GSTV + G G +GLA A  ARL GA  +I  D+   +
Sbjct: 4   LTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR 62

Query: 109 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL--------------- 152
               K  G      S    D  + + I  +      D   + VG                
Sbjct: 63  LAHAKAQGFEIADLSL---DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAP 119

Query: 153 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPI 212
           A+++       R   GK  + G+       ++ +   + S  I  G  +    +      
Sbjct: 120 ATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQT 178

Query: 213 LLKRYMDKELEL 224
            + +Y    ++ 
Sbjct: 179 PVMKYNRALMQA 190

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.4 bits (153), Expect = 6e-13
 Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 3/173 (1%)

Query: 49  ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 108
             +  C  +T   A         G TVVI G G +GL     AR  GA  +I +     +
Sbjct: 6   LAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR 65

Query: 109 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGW 167
            ++ +  G    +N +    +   + I+D+T G GAD+  E  G +  + E     R+G 
Sbjct: 66  LKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG- 124

Query: 168 GKTIVLGVDQPGSQLSLSSFEVLHS-GKILMGSLFGGLKAKSDIPILLKRYMD 219
           G   V GV  P   +    +E L        G              +  R   
Sbjct: 125 GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQ 177

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 9e-12
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 8/148 (5%)

Query: 52  LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 111
           LS G+      A R   V +G  V++ G G IG+     A+  GA +++  D+ + +   
Sbjct: 12  LSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 66

Query: 112 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI 171
            K  G    +       + +++ +        +   EC G  + +Q      R G     
Sbjct: 67  AKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG---GT 123

Query: 172 VLGVDQPGSQLSLSSFEVLHSGKILMGS 199
           ++ V       ++           + G 
Sbjct: 124 LVLVGLGSEMTTVPLLHAAIREVDIKGV 151

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+V  +        + +  
Sbjct: 123 VMSPKETRF-TCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVN 181

Query: 61  GAAWRTANVEVGSTVVIF 78
            A     + +   TV+  
Sbjct: 182 DAIDLMKHGKCIRTVLSL 199

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 53.8 bits (128), Expect = 1e-09
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 11/172 (6%)

Query: 49  ACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 107
              L+    T   A  + A  +  G+ V I G+G +G    +  ++     +I +DV  E
Sbjct: 9   MAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE 68

Query: 108 KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW 167
           K ++ +R G    V+++      V Q++      G +   + VG  + V        +  
Sbjct: 69  KLKLAERLGADHVVDAR---RDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM- 124

Query: 168 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD 219
           G+ I++G           +  V+ S     GSL G      ++  L+   + 
Sbjct: 125 GRLIIVGYGGELRF---PTIRVISSEVSFEGSLVGNYV---ELHELVTLALQ 170

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 15  ETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGST 74
           +TI H++  S+FSEYTV+    V K+DP +  +     +        A     + +   T
Sbjct: 134 KTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRT 193

Query: 75  VVI 77
           VV 
Sbjct: 194 VVK 196

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 52.7 bits (125), Expect = 4e-09
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 11/151 (7%)

Query: 52  LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 111
           LS GV      A R A V++G+TV++ G G IGL     A+  GA  +        + E+
Sbjct: 12  LSVGV-----HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP-RRLEV 65

Query: 112 GKRFGVTEFVN--SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK 169
            K  G    +        + S+ + I        +   +C G    +       R   G 
Sbjct: 66  AKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRT-GGT 124

Query: 170 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSL 200
            +++G       +++           +    
Sbjct: 125 LMLVG--MGSQMVTVPLVNACAREIDIKSVF 153

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 51.8 bits (123), Expect = 9e-09
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP +  N            V
Sbjct: 122 LMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFL----------V 170

Query: 61  GAAWRTANVEVGSTVVIFGLGSIGLAV 87
                   +     ++  G G   + +
Sbjct: 171 STKLTLDQINKAFELLSSGQGVRSIMI 197

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 11/164 (6%)

Query: 42  PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG 101
           P         L C   T      R      G  V + G+G +G    + A       ++ 
Sbjct: 2   PQEQLAAVAPLLCAGITTYSP-LRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVA 59

Query: 102 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYA 161
                 K E  K  G  E VNS+N  +               D+    V     + +   
Sbjct: 60  FTTSEAKREAAKALGADEVVNSRNADEM-------AAHLKSFDFILNTVAAPHNLDDFTT 112

Query: 162 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 205
             ++  G   ++G        S   F ++   + + GS+ GG+ 
Sbjct: 113 LLKRD-GTMTLVGA-PATPHKSPEVFNLIMKRRAIAGSMIGGIP 154

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 8   RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 67
                RG+ IHHF+  S+FS+YTV+D   V K+D          L   V           
Sbjct: 128 SRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFA---LDPLITHVLPFEKINEGFD 184

Query: 68  NVEVGSTVVIFG 79
            +  G ++    
Sbjct: 185 LLRSGESIRTIL 196

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (111), Expect = 4e-07
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 18  HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI 77
             +VS   ++ Y  +    VV +   +      +   GV           +V    T+V 
Sbjct: 127 DGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAF-ERMEKGDVRYRFTLVG 185

Query: 78  FG 79
           + 
Sbjct: 186 YD 187

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 46.4 bits (109), Expect = 6e-07
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 25  SFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS 82
             +EY ++  A  +++K+           ++  V   V +    A    G     F  G 
Sbjct: 133 GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDD-APRGYG----EFDAGV 187

Query: 83  IGLAVAEGARLCGA 96
               V +  +   A
Sbjct: 188 PKKFVIDPHKTFSA 201

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 46.0 bits (108), Expect = 8e-07
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
           +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD     +     +    +  
Sbjct: 126 LMEDRTSRF-TCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESIN 184

Query: 61  GAAWRTANVEVGSTVVI 77
            A      ++ G ++  
Sbjct: 185 DAI---DLMKEGKSIRT 198

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 11/163 (6%)

Query: 44  VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 103
           +P + A  L CG  T V +         G  V I GLG IG      ++         + 
Sbjct: 1   IPSHLAAPLLCGGLT-VYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISK-AMGAETYVIS 58

Query: 104 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS-LVQEAYAC 162
             S K E   + G   ++ +   GD        +      D    C    + +       
Sbjct: 59  RSSRKREDAMKMGADHYIATLEEGD------WGEKYFDTFDLIVVCASSLTDIDFNIMPK 112

Query: 163 CRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 205
             K  G+ + + + +    LSL           +  S  G +K
Sbjct: 113 AMKVGGRIVSISIPEQHEMLSL--KPYGLKAVSISYSALGSIK 153

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 13/77 (16%), Positives = 24/77 (31%)

Query: 1   MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 60
                 +     +G    HF + SSF+ Y +    + VKV    P ++            
Sbjct: 117 DSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQ 176

Query: 61  GAAWRTANVEVGSTVVI 77
            A      + +   + I
Sbjct: 177 AAIDSRKGITLKPIIKI 193

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 25  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI 77
           +   +   + A   K+   V P          +     A+ T    +G  +++
Sbjct: 127 NLCRFYKHNAAFCYKLPDNVKPLVTHRFPLEKAL---EAFETFKKGLGLKIML 176

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 8/55 (14%)

Query: 25  SFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF 78
            +S + VLD    V+KV   +       L          A           V+++
Sbjct: 135 CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN-----KALELMESREALKVILY 182

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 1/62 (1%)

Query: 18  HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI 77
                  + + Y V       K+       +    S  +   V A +  A  +  +T+ +
Sbjct: 114 ATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDA-FEAARKKADNTIKV 172

Query: 78  FG 79
             
Sbjct: 173 MI 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.97
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.97
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.97
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.97
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.97
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.97
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.97
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.97
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.97
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.96
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.96
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.96
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.96
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.96
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.96
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.96
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.96
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.95
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.95
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.95
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.95
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.94
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.94
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.92
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.91
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.67
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.31
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.3
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.28
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.18
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.16
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.12
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.09
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.01
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	98.98
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	98.95
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.86
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	98.86
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	98.82
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	98.76
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	98.75
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	98.68
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.67
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	98.65
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	98.57
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.48
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.42
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	98.24
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	98.24
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.22
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	98.22
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	98.18
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	98.14
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.14
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.09
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.09
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	98.08
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.08
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.08
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.07
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.07
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	98.04
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	98.04
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	98.02
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	98.01
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	98.0
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.99
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.98
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.97
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.95
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.94
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.93
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.93
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.9
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.87
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.87
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.86
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.85
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.85
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.84
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.84
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.83
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.83
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.82
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.82
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.81
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.8
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.79
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.79
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.79
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.79
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.79
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.79
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.78
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.78
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.76
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.76
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.74
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.74
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.73
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.73
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.71
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.71
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.71
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.71
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.7
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.69
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.67
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.66
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.66
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.65
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.63
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.63
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.63
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.61
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.6
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.59
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.58
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.57
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.56
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.55
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.54
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.53
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.5
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.48
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	97.48
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.48
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.47
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.45
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.44
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.44
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.43
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.43
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.42
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.42
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.41
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.41
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.4
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.4
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.39
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.37
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.33
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.32
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.31
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.31
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.25
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.25
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.25
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.2
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.17
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.17
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.12
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.12
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.07
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.05
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.03
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.0
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.98
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	96.98
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.95
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	96.94
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.93
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.93
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.92
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	96.9
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.82
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	96.79
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.75
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.73
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	96.71
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.67
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.64
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.61
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	96.58
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.53
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.52
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.52
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.51
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.5
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.49
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.49
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.46
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	96.46
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.41
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.4
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.4
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.39
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.34
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.33
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.32
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.31
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.29
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.28
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.27
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.27
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.24
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	96.23
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.23
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.22
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.22
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	96.22
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	96.2
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	96.2
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	96.15
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.14
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.13
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.13
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.1
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.09
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.08
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.04
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	96.01
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.0
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.0
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.99
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.96
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	95.94
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.94
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.93
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.91
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.89
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	95.88
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	95.83
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	95.81
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.8
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.77
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.77
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.74
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	95.74
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.71
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.71
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.7
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	95.69
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.68
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.67
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	95.63
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.62
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	95.62
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	95.6
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.59
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	95.58
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.57
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	95.57
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	95.55
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.54
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	95.54
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	95.51
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	95.48
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.45
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.42
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	95.41
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.41
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.4
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	95.38
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	95.37
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	95.31
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	95.26
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	95.26
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.25
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.25
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.23
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	95.2
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.19
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.17
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.17
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.15
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.12
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.1
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	95.08
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.08
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.03
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.02
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.02
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.01
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.01
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	95.0
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	95.0
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.98
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.98
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	94.96
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.92
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.89
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	94.87
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	94.86
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	94.84
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.78
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.68
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.67
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	94.65
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	94.65
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	94.64
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.58
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	94.47
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.41
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	94.4
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.34
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	94.29
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.22
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	94.21
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	94.19
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.18
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	94.09
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.08
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.04
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.99
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.99
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.99
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	93.93
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.88
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.86
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	93.85
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.84
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.83
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	93.81
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.8
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.78
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.77
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	93.75
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.71
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	93.71
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.71
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	93.68
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.68
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	93.66
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.66
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.58
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	93.48
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	93.48
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.37
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	93.36
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.33
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.29
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.19
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	93.17
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	93.16
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	93.16
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.12
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.1
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.03
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	93.02
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.91
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	92.87
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.86
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	92.85
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	92.84
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.82
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	92.79
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	92.78
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.73
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	92.72
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.64
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.62
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	92.6
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	92.55
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.4
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	92.27
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.22
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	92.22
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.13
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	92.1
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	92.05
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.05
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	92.04
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	92.03
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.98
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.97
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	91.91
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.88
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	91.82
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.69
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	91.63
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	91.63
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.49
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	91.49
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	91.48
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.38
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	91.3
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	91.24
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	91.14
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	90.91
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	90.87
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.86
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	90.75
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	90.71
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	90.7
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.58
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	90.47
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	90.37
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	90.33
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	90.15
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	90.11
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	89.97
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	89.96
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	89.87
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	89.77
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	89.67
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	89.46
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	89.24
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	89.2
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	89.19
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	89.08
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	88.94
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.57
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	88.56
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	88.54
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	88.14
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	88.07
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	88.06
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	88.02
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	88.02
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	87.79
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.76
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	87.59
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	87.5
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.45
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	87.2
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	87.09
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	86.89
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	86.85
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	86.67
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	86.54
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	86.28
d1jzta_	243	Hypothetical protein YNL200c (YNU0_YEAST) {Baker's	85.87
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	85.76
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	85.59
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	85.57
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	85.49
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.48
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	85.19
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	85.06
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	84.95
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.87
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	84.84
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	84.77
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	84.72
d1ve1a1	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	84.54
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	84.46
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	84.36
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.31
d1qopb_	390	Tryptophan synthase, beta-subunit {Salmonella typh	84.26
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	83.98
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	83.94
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	83.58
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	83.4
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	83.35
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	83.27
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	83.04
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	82.53
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	82.31
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	82.16
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.13
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	81.87
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	81.75
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	81.21
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	80.98
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	80.65
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	80.61
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	80.6
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	80.57

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=4.1e-33  Score=207.98  Aligned_cols=173  Identities=31%  Similarity=0.553  Sum_probs=158.6

Q ss_pred             CccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCC
Q 025101           45 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  124 (258)
Q Consensus        45 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~  124 (258)
                      +++.++.++|++.|||+++.+..++++|++|+|+|+|++|++++|+++.+|+.+|++++++++|+++++++|+++++|++
T Consensus         2 P~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~   81 (174)
T d1f8fa2           2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSK   81 (174)
T ss_dssp             CGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETT
T ss_pred             CHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCC
Confidence            56889999999999999988999999999999999999999999999999997788889999999999999999999999


Q ss_pred             CCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC
Q 025101          125 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  204 (258)
Q Consensus       125 ~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (258)
                      +   +++.+++++++++++|+||||+|++.+++.+++.++++ |+++.+|........+++...++.+++++.|++.++.
T Consensus        82 ~---~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~  157 (174)
T d1f8fa2          82 T---QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSG  157 (174)
T ss_dssp             T---SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGS
T ss_pred             C---cCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCc-eEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCC
Confidence            8   89999999999889999999999988899999999999 9999999766556677888889999999999987776


Q ss_pred             CCCCcHHHHHHHHHcCC
Q 025101          205 KAKSDIPILLKRYMDKE  221 (258)
Q Consensus       205 ~~~~~~~~~~~~~~~g~  221 (258)
                      ..+++++++++++++|+
T Consensus       158 ~~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         158 SPKKFIPELVRLYQQGK  174 (174)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHHHHHHHHcCC
Confidence            66678999999999984

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-31  Score=199.63  Aligned_cols=167  Identities=19%  Similarity=0.275  Sum_probs=148.8

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEc
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  122 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~  122 (258)
                      +|+++||++++++.|||++|.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++.++++++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence            5889999999999999999988899999999999996 9999999999999999 8999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEeccc
Q 025101          123 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  201 (258)
Q Consensus       123 ~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (258)
                      +++   +++.+.+++.+++ ++|+||||+|++. ++.++++++++ |+++.+|...   ..++++..++.|++++.|+..
T Consensus        80 ~~~---~~~~~~i~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~-G~iv~~G~~~---~~~~~~~~~~~k~~~i~g~~~  151 (174)
T d1yb5a2          80 HRE---VNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSLLSHG-GRVIVVGSRG---TIEINPRDTMAKESSIIGVTL  151 (174)
T ss_dssp             TTS---TTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHEEEE-EEEEECCCCS---CEEECTHHHHTTTCEEEECCG
T ss_pred             ccc---ccHHHHhhhhhccCCceEEeecccHHH-HHHHHhccCCC-CEEEEEecCC---CCCCCHHHHHHCCCEEEEEEe
Confidence            998   8999999999988 9999999999765 99999999999 9999998542   456777888899999999875


Q ss_pred             CCCCCCCcHHHHHHHHHcC
Q 025101          202 GGLKAKSDIPILLKRYMDK  220 (258)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~g  220 (258)
                      ... .++++++++++++++
T Consensus       152 ~~~-~~~~~~~~~~~l~~g  169 (174)
T d1yb5a2         152 FSS-TKEEFQQYAAALQAG  169 (174)
T ss_dssp             GGC-CHHHHHHHHHHHHHH
T ss_pred             cCC-CHHHHHHHHHHHHHH
Confidence            442 245678888877665

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.97  E-value=3.4e-30  Score=191.68  Aligned_cols=173  Identities=40%  Similarity=0.735  Sum_probs=145.2

Q ss_pred             ccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCC
Q 025101           46 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  125 (258)
Q Consensus        46 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~  125 (258)
                      +.+||++.|++.|||+++.+.+++++|++|+|+|+|++|++++|++|.+|+.+|++++++++|+++++++|+++++|+++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~   81 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD   81 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence            56799999999999999888999999999999999999999999999999889999999999999999999999999876


Q ss_pred             CCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCC
Q 025101          126 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  205 (258)
Q Consensus       126 ~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (258)
                       .+....+..+..+++++|++||++|++.+++.++..+++++|+++++|.......+++++..++ ++++++|+..+...
T Consensus        82 -~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~~~  159 (174)
T d1p0fa2          82 -YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLL-TGRSLKGSVFGGFK  159 (174)
T ss_dssp             -CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHH-TTCEEEECSGGGCC
T ss_pred             -chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHh-CCCEEEEEEeCCCC
Confidence             1122444444444559999999999998888898888663389999998766667777665554 58899999877653


Q ss_pred             CCCcHHHHHHHHHcCC
Q 025101          206 AKSDIPILLKRYMDKE  221 (258)
Q Consensus       206 ~~~~~~~~~~~~~~g~  221 (258)
                       .++++++++++.+|+
T Consensus       160 -~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         160 -GEEVSRLVDDYMKKK  174 (174)
T ss_dssp             -GGGHHHHHHHHHTTS
T ss_pred             -HHHHHHHHHHHHcCC
Confidence             458999999999884

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=6.5e-31  Score=197.52  Aligned_cols=171  Identities=23%  Similarity=0.307  Sum_probs=148.1

Q ss_pred             ccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCC
Q 025101           46 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  125 (258)
Q Consensus        46 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~  125 (258)
                      ++.+|.+.|+++|||+++.+..++++|++|||+|+|++|++++|+++.+|+.+|++++++++|.++++++|+++++|+++
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~   82 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE   82 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc
Confidence            46688899999999999988889999999999999999999999999999878999999999999999999999999988


Q ss_pred             CCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHH-HHhcCceEEecccCC
Q 025101          126 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE-VLHSGKILMGSLFGG  203 (258)
Q Consensus       126 ~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  203 (258)
                      .+..+..+.+.+.+++ ++|+||||+|++.+++.++++++++ |+++.+|...+..+.+++... ++.|++++.|++.++
T Consensus        83 ~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~  161 (182)
T d1vj0a2          83 TSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD  161 (182)
T ss_dssp             SCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC
T ss_pred             cchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCC-CEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCC
Confidence            2223345567788877 9999999999988799999999999 999999977666667776554 678899999997554


Q ss_pred             CCCCCcHHHHHHHHHcC
Q 025101          204 LKAKSDIPILLKRYMDK  220 (258)
Q Consensus       204 ~~~~~~~~~~~~~~~~g  220 (258)
                         .+++++++++++++
T Consensus       162 ---~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         162 ---TSHFVKTVSITSRN  175 (182)
T ss_dssp             ---HHHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHHHC
Confidence               56788999988876

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.97  E-value=5e-31  Score=196.07  Aligned_cols=171  Identities=28%  Similarity=0.421  Sum_probs=148.4

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcC
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  123 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~  123 (258)
                      +++|+|+.++++++|||+++ +.+++++|++|+|+|+|++|++++|++|.+|+++|++++++++|.+.++++|+++++|+
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence            57899999999999999985 77899999999999999999999999999999789999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHH--HHhcCceEEecc
Q 025101          124 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE--VLHSGKILMGSL  200 (258)
Q Consensus       124 ~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~  200 (258)
                      ++   +++.+.+++++++ ++|+||||+|++.+++.++++++++ |+++.+|........+++...  ...+++++.++.
T Consensus        80 ~~---~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~  155 (174)
T d1jqba2          80 KN---GHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGL  155 (174)
T ss_dssp             GG---SCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBC
T ss_pred             cc---hhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcC-CEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEec
Confidence            98   8999999999988 9999999999988899999999999 999999987665555554433  345688888886


Q ss_pred             cCCCCCCCcHHHHHHHHHcCC
Q 025101          201 FGGLKAKSDIPILLKRYMDKE  221 (258)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~g~  221 (258)
                      .+..  +...+++++++.+|+
T Consensus       156 ~~~~--r~~~e~l~~li~~gk  174 (174)
T d1jqba2         156 CPGG--RLRAERLRDMVVYNR  174 (174)
T ss_dssp             CCCH--HHHHHHHHHHHHTTS
T ss_pred             CCCC--cccHHHHHHHHHcCC
Confidence            4432  345677888888774

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.97  E-value=4.4e-30  Score=190.75  Aligned_cols=172  Identities=37%  Similarity=0.729  Sum_probs=146.0

Q ss_pred             CccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCC
Q 025101           45 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  124 (258)
Q Consensus        45 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~  124 (258)
                      +++++|.++|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++.+|+++|++++.+++|+++++++|+++++|++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            46889999999999999988899999999999999999999999999999998899999999999999999999999876


Q ss_pred             CCCCccHHHHHHHhc-CCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCC
Q 025101          125 NCGDKSVSQIIIDMT-DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  203 (258)
Q Consensus       125 ~~~~~~~~~~i~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (258)
                      + . ++..+.+.+.+ ++++|+||||+|.+.+++.+++++++++|+++.+|...+  ..+++...++. +.++.|+..++
T Consensus        82 ~-~-~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~--~~~i~~~~~~~-~k~i~Gs~~Gs  156 (174)
T d1e3ia2          82 E-L-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVD--EMTIPTVDVIL-GRSINGTFFGG  156 (174)
T ss_dssp             G-C-SSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSS--EEEEEHHHHHT-TCEEEECSGGG
T ss_pred             c-c-hhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCC--ccccchHHHhc-cCEEEEEEeeC
Confidence            5 1 33444444444 449999999999999899999999983399999997643  45666666554 67899998887


Q ss_pred             CCCCCcHHHHHHHHHcCC
Q 025101          204 LKAKSDIPILLKRYMDKE  221 (258)
Q Consensus       204 ~~~~~~~~~~~~~~~~g~  221 (258)
                      +..+++++++++++.+|+
T Consensus       157 ~~~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         157 WKSVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             CCHHHHHHHHHHHHHTTS
T ss_pred             CChHHHHHHHHHHHHCcC
Confidence            777788999999998884

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.97  E-value=5.3e-30  Score=191.65  Aligned_cols=175  Identities=41%  Similarity=0.743  Sum_probs=145.4

Q ss_pred             CccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCC
Q 025101           45 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  124 (258)
Q Consensus        45 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~  124 (258)
                      ++++||.++|++.|||+++.+.+++++|++|||+|+|++|++++|+++.+|+.+|++++++++|.+.++++|+++++|++
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            46889999999999999998889999999999999999999999999999987899999999999999999999999886


Q ss_pred             CCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC
Q 025101          125 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  204 (258)
Q Consensus       125 ~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (258)
                      + +.++..+.+++.+++++|+|||++|.+..++.+...++++ |.++.++..........+....+.++.++.|+..++.
T Consensus        82 ~-~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~  159 (176)
T d2fzwa2          82 D-FSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG-WGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGW  159 (176)
T ss_dssp             G-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGC
T ss_pred             c-hhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCC-ceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCC
Confidence            5 2244555666666669999999999998888999999988 8877665444333333333444556899999988776


Q ss_pred             CCCCcHHHHHHHHHcCC
Q 025101          205 KAKSDIPILLKRYMDKE  221 (258)
Q Consensus       205 ~~~~~~~~~~~~~~~g~  221 (258)
                      ..+++++++++++.+|+
T Consensus       160 ~~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         160 KSVESVPKLVSEYMSKK  176 (176)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHcCC
Confidence            66778999999999884

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1e-30  Score=196.77  Aligned_cols=173  Identities=23%  Similarity=0.267  Sum_probs=146.9

Q ss_pred             cchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCC
Q 025101           47 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  125 (258)
Q Consensus        47 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~  125 (258)
                      +|||+++++++|||+++.+..++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|+++++|+++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence            5899999999999999999999999999999986 9999999999999999 9999999999999999999999999998


Q ss_pred             CCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC
Q 025101          126 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  204 (258)
Q Consensus       126 ~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (258)
                         +++.+++++.+++ ++|++|||+|++. ++.++++++++ |+++.+|............. .+.++.++.++.....
T Consensus        80 ---~~~~~~v~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  153 (183)
T d1pqwa_          80 ---VDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPG-GRFIELGKKDVYADASLGLA-ALAKSASFSVVDLDLN  153 (183)
T ss_dssp             ---STHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEE-EEEEECSCGGGTTTCEEEGG-GGTTTCEEEECCHHHH
T ss_pred             ---cCHHHHHHHHhCCCCEEEEEecccchH-HHHHHHHhcCC-CEEEEEccCCCCCCcccchH-HHhCCcEEEEEEccce
Confidence               8999999999988 9999999999866 99999999999 99999996654333333333 3456888887753321


Q ss_pred             C------CCCcHHHHHHHHHcCCCCCCc
Q 025101          205 K------AKSDIPILLKRYMDKELELDK  226 (258)
Q Consensus       205 ~------~~~~~~~~~~~~~~g~~~~~~  226 (258)
                      .      .++.++++++++++|++++.|
T Consensus       154 ~~~~~~~~~~~~~~v~~~i~~G~i~p~P  181 (183)
T d1pqwa_         154 LKLQPARYRQLLQHILQHVADGKLEVLP  181 (183)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             eccCHHHHHHHHHHHHHHHHCCCCceeC
Confidence            1      135578888999999887654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-29  Score=188.00  Aligned_cols=168  Identities=19%  Similarity=0.331  Sum_probs=144.5

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcC
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  123 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~  123 (258)
                      +|+++||.+. ++++||+++ ++.++++|++|+|+|+|++|++++|+++.+|+.+|++++++++|+++++++|+++++++
T Consensus         1 vS~e~Aal~e-pla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI   78 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence            5788998775 899999985 67899999999999999999999999999999889999999999999999999999998


Q ss_pred             CCCCCccHHHHH---HHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecc
Q 025101          124 KNCGDKSVSQII---IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  200 (258)
Q Consensus       124 ~~~~~~~~~~~i---~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (258)
                      .+   ++..+..   ....+.++|+||||+|++.+++.++++++++ |+++.+|....  ..+++...++.|++++.|++
T Consensus        79 ~~---~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~g-G~iv~~G~~~~--~~~~~~~~~~~k~l~i~Gs~  152 (171)
T d1pl8a2          79 SK---ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSE--MTTVPLLHAAIREVDIKGVF  152 (171)
T ss_dssp             SS---CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCCS--CCCCCHHHHHHTTCEEEECC
T ss_pred             cc---cccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCC-CEEEEEecCCC--CCccCHHHHHHCCcEEEEEe
Confidence            87   5544433   3333448999999999998899999999999 99999997654  45677888889999999985


Q ss_pred             cCCCCCCCcHHHHHHHHHcCCCC
Q 025101          201 FGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      .    +.++++++++++++|+++
T Consensus       153 ~----~~~~~~~al~li~~gkid  171 (171)
T d1pl8a2         153 R----YCNTWPVAISMLASKSVN  171 (171)
T ss_dssp             S----CSSCHHHHHHHHHTTSCC
T ss_pred             C----CHhHHHHHHHHHHcCCCC
Confidence            2    246799999999999763

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=5.3e-30  Score=190.51  Aligned_cols=168  Identities=24%  Similarity=0.298  Sum_probs=152.0

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEc
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  122 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~  122 (258)
                      +++.|||.++|++.|||+++ +..++++|++|+|+|+ |++|++++|+++..|+.+|++++++++|.++++++|+++++|
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence            47889999999999999997 6789999999999995 999999999999999779999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEeccc
Q 025101          123 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  201 (258)
Q Consensus       123 ~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (258)
                      +++   +++.+.+++.+.+ ++|++|||+|++.+++.++++++++ |+++.+|....  +.+++...++.|++++.|++.
T Consensus        80 ~~~---~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~k~i~i~Gs~~  153 (170)
T d1jvba2          80 ASM---QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGA--DLHYHAPLITLSEIQFVGSLV  153 (170)
T ss_dssp             TTT---SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCC--CCCCCHHHHHHHTCEEEECCS
T ss_pred             cCC---cCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccC-CEEEEeccccC--ccccCHHHHHhCCcEEEEEec
Confidence            988   8999999999877 8999999999998899999999999 99999997644  456777788889999999976


Q ss_pred             CCCCCCCcHHHHHHHHHcCC
Q 025101          202 GGLKAKSDIPILLKRYMDKE  221 (258)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~g~  221 (258)
                      ++   +++++++++++++|+
T Consensus       154 ~~---~~d~~~~l~lv~~GK  170 (170)
T d1jvba2         154 GN---QSDFLGIMRLAEAGK  170 (170)
T ss_dssp             CC---HHHHHHHHHHHHTTS
T ss_pred             CC---HHHHHHHHHHHHcCC
Confidence            54   578999999999884

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.97  E-value=2.3e-29  Score=187.38  Aligned_cols=172  Identities=37%  Similarity=0.743  Sum_probs=146.7

Q ss_pred             CccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCC
Q 025101           45 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  124 (258)
Q Consensus        45 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~  124 (258)
                      ++++||.++|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++..|+.+|++++.+++|++.++++|++++||++
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~   82 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK   82 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence            47899999999999999988889999999999999999999999999999987999999999999999999999999988


Q ss_pred             CCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCC
Q 025101          125 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  203 (258)
Q Consensus       125 ~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (258)
                      +  .+...+.+.+.+.+ ++|++||++|.+.++..++..+.+++|+++.+|.........+++..++ ++.+++|+..+.
T Consensus        83 ~--~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~  159 (176)
T d1d1ta2          83 D--STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLF-TGRTWKGCVFGG  159 (176)
T ss_dssp             G--CSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGG
T ss_pred             c--cchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHh-CCCEEEEEEEeC
Confidence            6  12345566666656 9999999999998788888877654499999998766666666665555 488999998887


Q ss_pred             CCCCCcHHHHHHHHHc
Q 025101          204 LKAKSDIPILLKRYMD  219 (258)
Q Consensus       204 ~~~~~~~~~~~~~~~~  219 (258)
                      ...+++++++++++.+
T Consensus       160 ~~~~~dip~li~~~~~  175 (176)
T d1d1ta2         160 LKSRDDVPKLVTEFLA  175 (176)
T ss_dssp             CCHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhC
Confidence            7777889998888754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=2.7e-29  Score=185.93  Aligned_cols=165  Identities=22%  Similarity=0.334  Sum_probs=146.9

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcC
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  123 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~  123 (258)
                      ++++++|.++|++.|||+++ +..++++|++|+|+|+|++|++++|++|.+|+ +|++++++++|+++++++|+++++|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence            57899999999999999997 56899999999999999999999999999998 99999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCC
Q 025101          124 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  203 (258)
Q Consensus       124 ~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (258)
                      ++   ++..+.+++.+. +.+.++++++++..++.++++++++ |+++.+|...  ...+++...++.|++++.|++.++
T Consensus        79 ~~---~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~~~i~Gs~~~~  151 (166)
T d1llua2          79 RQ---EDPVEAIQRDIG-GAHGVLVTAVSNSAFGQAIGMARRG-GTIALVGLPP--GDFPTPIFDVVLKGLHIAGSIVGT  151 (166)
T ss_dssp             TT---SCHHHHHHHHHS-SEEEEEECCSCHHHHHHHHTTEEEE-EEEEECCCCS--SEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             cc---hhHHHHHHHhhc-CCcccccccccchHHHHHHHHhcCC-cEEEEEEecC--CCccCCHHHHHhCCcEEEEEeecC
Confidence            98   888888887765 4677777777777799999999999 9999999654  356788888999999999987554


Q ss_pred             CCCCCcHHHHHHHHHcC
Q 025101          204 LKAKSDIPILLKRYMDK  220 (258)
Q Consensus       204 ~~~~~~~~~~~~~~~~g  220 (258)
                         +++++++++++++|
T Consensus       152 ---~~d~~e~l~l~~~G  165 (166)
T d1llua2         152 ---RADLQEALDFAGEG  165 (166)
T ss_dssp             ---HHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHCc
Confidence               57899999999887

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.96  E-value=8.2e-29  Score=184.99  Aligned_cols=175  Identities=38%  Similarity=0.706  Sum_probs=142.6

Q ss_pred             CccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCC
Q 025101           45 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  124 (258)
Q Consensus        45 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~  124 (258)
                      ++++||.++|++.|||+++.+..++++|++|||+|+|++|++++++++..|+.+|++++++++|.+.++++|+++++++.
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            46889999999999999998999999999999999999999999999999988999999999999999999999998876


Q ss_pred             CCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCC
Q 025101          125 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  204 (258)
Q Consensus       125 ~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (258)
                      + .++...+.++...++++|++||++|.+.+++.++..++++ |..+.++.........+....++.+++++.|+..++.
T Consensus        82 ~-~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~  159 (176)
T d2jhfa2          82 D-YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEA-YGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGF  159 (176)
T ss_dssp             G-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGC
T ss_pred             C-chhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcC-CcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCC
Confidence            5 1123444444444459999999999998889999999987 5554454443333333333445667999999988877


Q ss_pred             CCCCcHHHHHHHHHcCC
Q 025101          205 KAKSDIPILLKRYMDKE  221 (258)
Q Consensus       205 ~~~~~~~~~~~~~~~g~  221 (258)
                      ..+++++++++++.+|+
T Consensus       160 ~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         160 KSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHCcC
Confidence            77788999999998874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=9.2e-30  Score=190.82  Aligned_cols=141  Identities=15%  Similarity=0.220  Sum_probs=126.3

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEc
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  122 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~  122 (258)
                      +|+++||+++++++|||++|.+..++++|++|||+|+ |++|++++|+|+..|+ +|++++++++|.++++++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence            5899999999999999999988889999999999976 7899999999999999 9999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHh
Q 025101          123 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH  191 (258)
Q Consensus       123 ~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~  191 (258)
                      +++   +++.+++++++++ ++|+|+|++|++. +..++++++++ |+++.+|.... ....++...+..
T Consensus        80 ~~~---~d~~~~v~~~t~g~g~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~  143 (179)
T d1qora2          80 YRE---EDLVERLKEITGGKKVRVVYDSVGRDT-WERSLDCLQRR-GLMVSFGNSSG-AVTGVNLGILNQ  143 (179)
T ss_dssp             TTT---SCHHHHHHHHTTTCCEEEEEECSCGGG-HHHHHHTEEEE-EEEEECCCTTC-CCCCBCTHHHHH
T ss_pred             CCC---CCHHHHHHHHhCCCCeEEEEeCccHHH-HHHHHHHHhcC-CeeeecccccC-Cccccchhhhhc
Confidence            999   9999999999988 9999999999776 99999999999 99999986654 333444444433

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=1.3e-29  Score=187.64  Aligned_cols=171  Identities=13%  Similarity=0.094  Sum_probs=135.4

Q ss_pred             CCccchhhcchhhhhhhhhh---hhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce
Q 025101           44 VPPNRACLLSCGVSTGVGAA---WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  119 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l---~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~  119 (258)
                      +|++|||++++++.|||+++   .+....++|++|||+|+ |++|.+++|++|.+|+ +|++++++++|.++++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            58999999999999999764   35678889999999986 9999999999999999 9999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEec
Q 025101          120 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  199 (258)
Q Consensus       120 vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  199 (258)
                      ++|+++    .+.+.++...++++|+|||++|+.. ++.++++++++ |+++.+|...+ ...+++...++.|++++.|.
T Consensus        80 vi~~~~----~~~~~~~~~~~~gvD~vid~vgg~~-~~~~l~~l~~~-Griv~~G~~~g-~~~~~~~~~~~~k~~~i~Gv  152 (176)
T d1xa0a2          80 VLARED----VMAERIRPLDKQRWAAAVDPVGGRT-LATVLSRMRYG-GAVAVSGLTGG-AEVPTTVHPFILRGVSLLGI  152 (176)
T ss_dssp             EEECC-------------CCSCCEEEEEECSTTTT-HHHHHHTEEEE-EEEEECSCCSS-SCCCCCSHHHHHTTCEEEEC
T ss_pred             eeecch----hHHHHHHHhhccCcCEEEEcCCchh-HHHHHHHhCCC-ceEEEeecccC-cccCCCHHHHHHCCcEEEEE
Confidence            999865    3344444444449999999999887 99999999999 99999997654 45677888889999999997


Q ss_pred             ccCCCCCCCcHHHHHHHHHcCCCCC
Q 025101          200 LFGGLKAKSDIPILLKRYMDKELEL  224 (258)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~g~~~~  224 (258)
                      .... ...+...++++.+. +.+++
T Consensus       153 ~~~~-~~~~~~~~~~~~la-g~lkP  175 (176)
T d1xa0a2         153 DSVY-CPMDLRLRIWERLA-GDLKP  175 (176)
T ss_dssp             CSSS-CCHHHHHHHHHHHH-TTTCC
T ss_pred             eCCc-CCHHHHHHHHHHHh-cccCC
Confidence            4322 22344555565553 65543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.96  E-value=3.6e-29  Score=186.16  Aligned_cols=166  Identities=21%  Similarity=0.344  Sum_probs=145.2

Q ss_pred             Cccchhhcchhhhhhhhhhhhhc-CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcC
Q 025101           45 PPNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  123 (258)
Q Consensus        45 ~~~~aa~~~~~~~ta~~~l~~~~-~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~  123 (258)
                      .+.++|+++++++|||+++.+.. .+++|++|+|+|+|++|++++|+++.+|+.+|++++++++|+++++++|+++++|+
T Consensus         5 ~l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~   84 (172)
T d1h2ba2           5 KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDA   84 (172)
T ss_dssp             HHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEET
T ss_pred             hHHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecC
Confidence            35678999999999999987655 57999999999999999999999999998788999999999999999999999998


Q ss_pred             CCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccC
Q 025101          124 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  202 (258)
Q Consensus       124 ~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (258)
                      ++    +..+.+.+.+.+ ++|+||||+|+..+++.++++++++ |+++.+|...   ..+++...++.|++++.|++.+
T Consensus        85 ~~----~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~---~~~~~~~~l~~k~~~i~Gs~~~  156 (172)
T d1h2ba2          85 RR----DPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYGG---ELRFPTIRVISSEVSFEGSLVG  156 (172)
T ss_dssp             TS----CHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEE-EEEEECCCSS---CCCCCHHHHHHTTCEEEECCSC
T ss_pred             cc----cHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCC-CEEEEEeCcc---cccCCHHHHHhCCcEEEEEEec
Confidence            76    455666677777 9999999999988899999999999 9999999532   3567788889999999999765


Q ss_pred             CCCCCCcHHHHHHHHHcCC
Q 025101          203 GLKAKSDIPILLKRYMDKE  221 (258)
Q Consensus       203 ~~~~~~~~~~~~~~~~~g~  221 (258)
                      +   +++++++++++.+|+
T Consensus       157 ~---~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         157 N---YVELHELVTLALQGK  172 (172)
T ss_dssp             C---HHHHHHHHHHHHTTS
T ss_pred             C---HHHHHHHHHHHHcCC
Confidence            5   568999999999884

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.96  E-value=2e-28  Score=181.87  Aligned_cols=168  Identities=21%  Similarity=0.326  Sum_probs=140.9

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcC
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  123 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~  123 (258)
                      +|+++||++. ++++||+++ +..++++|++|+|+|+|++|++++|++|..|+ +|++++++++|+++++++|++.+++.
T Consensus         1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence            5789998875 889999986 67889999999999999999999999999999 99999999999999999999876654


Q ss_pred             CCC--CCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEeccc
Q 025101          124 KNC--GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  201 (258)
Q Consensus       124 ~~~--~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (258)
                      +..  +..+..+.+++..++++|+||||+|++.+++.++++++++ |+++.+|....  +.+++...++.|++++.|++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~--~~~~~~~~~~~k~i~i~gs~~  154 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQ--MVTVPLVNACAREIDIKSVFR  154 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCSS--CCCCCHHHHHTTTCEEEECCS
T ss_pred             cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcC-CceEEEecCCC--CCCcCHHHHHHCCCEEEEEEC
Confidence            431  1123445555555559999999999998899999999999 99999997643  456777888999999999853


Q ss_pred             CCCCCCCcHHHHHHHHHcCC
Q 025101          202 GGLKAKSDIPILLKRYMDKE  221 (258)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~g~  221 (258)
                          +..+++++++++++|+
T Consensus       155 ----~~~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         155 ----YCNDYPIALEMVASGR  170 (170)
T ss_dssp             ----CSSCHHHHHHHHHTTS
T ss_pred             ----CHHHHHHHHHHHHcCC
Confidence                2457999999999984

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=1.6e-28  Score=182.14  Aligned_cols=168  Identities=21%  Similarity=0.411  Sum_probs=148.6

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcC
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  123 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~  123 (258)
                      +|+++||++++++.|||+++ +..++++|++|||+|+|++|++++|+++..|+ +|++++++++|.++++++|++.++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence            58999999999999999997 57889999999999999999999999999999 89999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCC
Q 025101          124 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  203 (258)
Q Consensus       124 ~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (258)
                      ++   +++.+.+++.+.+ .+.++++++++..++.++++++++ |+++.+|...  .+.+++...++.+++++.|+..+.
T Consensus        79 ~~---~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~a~~~l~~~-G~i~~~g~~~--~~~~~~~~~~~~~~~~i~gs~~~~  151 (168)
T d1rjwa2          79 LK---EDAAKFMKEKVGG-VHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPP--EEMPIPIFDTVLNGIKIIGSIVGT  151 (168)
T ss_dssp             TT---SCHHHHHHHHHSS-EEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCS--SEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             cc---chhhhhcccccCC-CceEEeecCCHHHHHHHHHHhccC-CceEeccccc--CCCCCCHHHHHHCCcEEEEEeeCC
Confidence            98   8899999988875 455556667777799999999999 9999999654  456778888899999999987543


Q ss_pred             CCCCCcHHHHHHHHHcCCCC
Q 025101          204 LKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       204 ~~~~~~~~~~~~~~~~g~~~  223 (258)
                         +++++++++++++|+++
T Consensus       152 ---~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         152 ---RKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             ---HHHHHHHHHHHHTTSCC
T ss_pred             ---HHHHHHHHHHHHhCCCC
Confidence               67899999999999764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.96  E-value=1.1e-28  Score=185.27  Aligned_cols=165  Identities=18%  Similarity=0.187  Sum_probs=140.0

Q ss_pred             hhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCC
Q 025101           50 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  128 (258)
Q Consensus        50 a~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  128 (258)
                      ++++++++|||++|.+..++++|++|||+|+ |++|++++|++|..|+ +|+++++++++.++++++|+++++++++   
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~---   83 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT---   83 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS---
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccc---
Confidence            5678899999999999999999999999987 8999999999999999 9999999999999999999999999998   


Q ss_pred             ccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCC-----CCceeechHHHHhcCceEEecccC
Q 025101          129 KSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP-----GSQLSLSSFEVLHSGKILMGSLFG  202 (258)
Q Consensus       129 ~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  202 (258)
                      +++.+.+.+.+.+ ++|+|||++|.+. ++.++++++++ |+++.+|....     ..+..+....++.|++++.|++..
T Consensus        84 ~~~~~~~~~~~~~~Gvd~v~D~vG~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~  161 (182)
T d1v3va2          84 VNSLEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVY  161 (182)
T ss_dssp             CSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHGGGEEEE-EEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGG
T ss_pred             ccHHHHHHHHhhcCCCceeEEecCchh-hhhhhhhccCC-CeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEe
Confidence            8888888877766 9999999999765 99999999999 99999995432     123345566788999999998766


Q ss_pred             CCCC---CCcHHHHHHHHHcC
Q 025101          203 GLKA---KSDIPILLKRYMDK  220 (258)
Q Consensus       203 ~~~~---~~~~~~~~~~~~~g  220 (258)
                      .+..   ++.++++++++.+|
T Consensus       162 ~~~~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         162 RWQGDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             GCCHHHHHHHHHHHHHHHHTT
T ss_pred             ccChHHHHHHHHHHHHHHhCc
Confidence            5432   23466777777765

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.96  E-value=3.6e-28  Score=181.34  Aligned_cols=173  Identities=42%  Similarity=0.763  Sum_probs=143.2

Q ss_pred             CccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCC
Q 025101           45 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  124 (258)
Q Consensus        45 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~  124 (258)
                      ++++||+++|++.|+|+++.+.+++++|++|+|+|+|++|++++++++..|..+|++++++++|++.++++|++++||+.
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            46889999999999999998889999999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCC
Q 025101          125 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  203 (258)
Q Consensus       125 ~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (258)
                      +  ..+..+.+.+.+.+ ++|++||++|...++..++..++++++.++..|....  ....+....+.++.++.|+..+.
T Consensus        82 ~--~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~--~~~~~~~~~~~~~~~i~Gs~~G~  157 (175)
T d1cdoa2          82 D--HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL--HDVATRPIQLIAGRTWKGSMFGG  157 (175)
T ss_dssp             G--CSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSS--SCEEECHHHHHTTCEEEECSGGG
T ss_pred             C--cchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCC--cccCccHHHHHCCcEEEEEEEeC
Confidence            6  13445566666555 9999999999988788888888876244444554432  23334445566789999998887


Q ss_pred             CCCCCcHHHHHHHHHcCC
Q 025101          204 LKAKSDIPILLKRYMDKE  221 (258)
Q Consensus       204 ~~~~~~~~~~~~~~~~g~  221 (258)
                      +.++++++++++++.+|+
T Consensus       158 ~~~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         158 FKGKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             CCHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHHHHHcCC
Confidence            777789999999999884

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.6e-28  Score=181.85  Aligned_cols=165  Identities=19%  Similarity=0.188  Sum_probs=137.7

Q ss_pred             CccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCC
Q 025101           45 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  124 (258)
Q Consensus        45 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~  124 (258)
                      +.+.||.+.|++.|||+++ +..++++|++|+|+|+|++|++++|++|.+|+ +|++++++++|.+.++++|+++++++.
T Consensus         2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeecc
Confidence            3477889999999999997 56899999999999999999999999999999 899999999999999999999999887


Q ss_pred             CCCCccHHHHHHHhcCCCCCEEEEecCChh--hHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccC
Q 025101          125 NCGDKSVSQIIIDMTDGGADYCFECVGLAS--LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  202 (258)
Q Consensus       125 ~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (258)
                      +.  .++.+    ...+++|.++||++...  .++.++++++++ |+++.+|.....  .+++...++.|++++.|+..+
T Consensus        80 ~~--~~~~~----~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~~--~~~~~~~~~~k~~~i~Gs~~g  150 (168)
T d1piwa2          80 EE--GDWGE----KYFDTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQH--EMLSLKPYGLKAVSISYSALG  150 (168)
T ss_dssp             GT--SCHHH----HSCSCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCSS--CCEEECGGGCBSCEEEECCCC
T ss_pred             ch--HHHHH----hhhcccceEEEEecCCccchHHHHHHHhhcc-ceEEEecccccc--ccccHHHHHhCCcEEEEEeeC
Confidence            61  33332    22337999999987643  467899999999 999999976543  345555678889999999766


Q ss_pred             CCCCCCcHHHHHHHHHcCCCC
Q 025101          203 GLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       203 ~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      +   +++++++++++++|+++
T Consensus       151 ~---~~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         151 S---IKELNQLLKLVSEKDIK  168 (168)
T ss_dssp             C---HHHHHHHHHHHHHTTCC
T ss_pred             C---HHHHHHHHHHHHhCCCC
Confidence            5   57899999999999764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.7e-28  Score=180.71  Aligned_cols=164  Identities=20%  Similarity=0.280  Sum_probs=136.2

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcC
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  123 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~  123 (258)
                      .++.++|.+.|+..|+|+++ +..++++|++|+|+|+|++|++++|++|.+|+ +++++++++++.++++++|+++++|+
T Consensus         4 ~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~   81 (168)
T d1uufa2           4 EQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNS   81 (168)
T ss_dssp             GGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEET
T ss_pred             ccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEEC
Confidence            45677888899999999997 67899999999999999999999999999999 88899999999999999999999998


Q ss_pred             CCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCC
Q 025101          124 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  203 (258)
Q Consensus       124 ~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (258)
                      .+   ++....    ..+++|++||++|.+.+++.+++.++++ |+++.+|.... ....++...++.|++++.|+..++
T Consensus        82 ~~---~~~~~~----~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~l~~k~~~i~Gs~~~~  152 (168)
T d1uufa2          82 RN---ADEMAA----HLKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPAT-PHKSPEVFNLIMKRRAIAGSMIGG  152 (168)
T ss_dssp             TC---HHHHHT----TTTCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCEEEECCSCC
T ss_pred             ch---hhHHHH----hcCCCceeeeeeecchhHHHHHHHHhcC-CEEEEeccCCC-CcccccHHHHHHCCcEEEEEeecC
Confidence            87   433221    1128999999999987799999999999 99999996543 334566777888999999997654


Q ss_pred             CCCCCcHHHHHHHHHcCC
Q 025101          204 LKAKSDIPILLKRYMDKE  221 (258)
Q Consensus       204 ~~~~~~~~~~~~~~~~g~  221 (258)
                         +++++++++++++++
T Consensus       153 ---~~d~~e~l~l~a~~~  167 (168)
T d1uufa2         153 ---IPETQEMLDFCAEHG  167 (168)
T ss_dssp             ---HHHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHHHHcC
Confidence               578999999988764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=2e-28  Score=181.69  Aligned_cols=146  Identities=20%  Similarity=0.309  Sum_probs=122.0

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEc
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  122 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~  122 (258)
                      ++++|||++++++.|||+++. ..++++|++|||+|+ |++|++++|++|..|+ +|+++++++++.++++++|+++++|
T Consensus         1 ls~eeAA~l~~~~~TA~~al~-~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALK-RAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHH-HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence            578999999999999999984 589999999999986 9999999999999999 9999999999999999999999998


Q ss_pred             CCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEeccc
Q 025101          123 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  201 (258)
Q Consensus       123 ~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (258)
                      +.+     ..   .+.+.+ ++|+|||++|. . ++.++++++++ |+++.+|...+ ...+++...++.|++++.|+..
T Consensus        79 ~~~-----~~---~~~~~~~g~D~v~d~~G~-~-~~~~~~~l~~~-G~~v~~G~~~g-~~~~~~~~~~~~k~~~i~g~~~  146 (171)
T d1iz0a2          79 YAE-----VP---ERAKAWGGLDLVLEVRGK-E-VEESLGLLAHG-GRLVYIGAAEG-EVAPIPPLRLMRRNLAVLGFWL  146 (171)
T ss_dssp             GGG-----HH---HHHHHTTSEEEEEECSCT-T-HHHHHTTEEEE-EEEEEC--------CCCCTTHHHHTTCEEEECCH
T ss_pred             hhh-----hh---hhhhccccccccccccch-h-HHHHHHHHhcC-CcEEEEeCCCC-CCCCccHHHHHHCCcEEEEEeC
Confidence            865     33   333344 89999999883 4 89999999999 99999996543 3456777788899999999875


Q ss_pred             CC
Q 025101          202 GG  203 (258)
Q Consensus       202 ~~  203 (258)
                      ..
T Consensus       147 ~~  148 (171)
T d1iz0a2         147 TP  148 (171)
T ss_dssp             HH
T ss_pred             cC
Confidence            54

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.95  E-value=3.3e-28  Score=183.55  Aligned_cols=174  Identities=15%  Similarity=0.137  Sum_probs=140.0

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE-cc-CHHHHHHHHHHHHcCCCeEEEEcCCcc----hHHHHHhcCC
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-GL-GSIGLAVAEGARLCGATRIIGVDVISE----KFEIGKRFGV  117 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~-G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~----~~~~~~~~g~  117 (258)
                      +|+++||+++++++|||++|.+..++++|++++|+ |+ |++|++++|+||.+|+ +|++++++++    +.+.++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            58899999999999999999888999999999887 54 8999999999999999 8998876654    3456789999


Q ss_pred             ceEEcCCCCCCccHHHHHHHhc---CCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCc
Q 025101          118 TEFVNSKNCGDKSVSQIIIDMT---DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  194 (258)
Q Consensus       118 ~~vi~~~~~~~~~~~~~i~~~~---~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  194 (258)
                      ++++++++....++.+.+++.+   ++++|++||++|++. +..++++++++ |+++.+|...+ .+.+++...++.|++
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~-~~~~~~~l~~~-G~~v~~G~~~~-~~~~~~~~~l~~k~~  156 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNN-GLMLTYGGMSF-QPVTIPTSLYIFKNF  156 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTT-CEEEECCCCSS-CCEEECHHHHHHSCC
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcch-hhhhhhhhcCC-cEEEEECCccC-CCccCcHHHHHHCCc
Confidence            9999886522345556666553   338999999999877 89999999999 99999996543 466788888888999


Q ss_pred             eEEecccCCCCC------CCcHHHHHHHHHcCC
Q 025101          195 ILMGSLFGGLKA------KSDIPILLKRYMDKE  221 (258)
Q Consensus       195 ~~~~~~~~~~~~------~~~~~~~~~~~~~g~  221 (258)
                      ++.|++.+.+..      ++.+.++++++++|+
T Consensus       157 ~i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         157 TSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             EEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            999986543211      234667777777763

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=6.5e-27  Score=176.03  Aligned_cols=172  Identities=17%  Similarity=0.179  Sum_probs=131.4

Q ss_pred             CCccchhhcchhhhhhhhhhhhhcCCCCC--CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhcCCce
Q 025101           44 VPPNRACLLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTE  119 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g--~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~~~g~~~  119 (258)
                      +|+.+.+ +++++.|||++|.+..++++|  ++|||+|+ |++|++++|+||.+|+++|+++++++++.. ..+++|+++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            5666654 677899999999999899887  88999985 999999999999999966777777766655 456799999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCC-C----ceee---chHHHHh
Q 025101          120 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG-S----QLSL---SSFEVLH  191 (258)
Q Consensus       120 vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-~----~~~~---~~~~~~~  191 (258)
                      ++|+++   +++.+.+++.++.++|+|||++|++. ++.++++++++ |+++.+|..++. .    ..+.   ....+..
T Consensus        81 vi~~~~---~~~~~~~~~~~~~GvDvv~D~vGg~~-~~~~~~~l~~~-G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~  155 (187)
T d1vj1a2          81 AVNYKT---GNVAEQLREACPGGVDVYFDNVGGDI-SNTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPPAVEAIRKE  155 (187)
T ss_dssp             EEETTS---SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEE-EEEEEC------------CCCCCHHHHHHHHH
T ss_pred             Eeeccc---hhHHHHHHHHhccCceEEEecCCchh-HHHHhhhcccc-ccEEEeccccccccccccCCchHHHHHHHHHh
Confidence            999999   99999999998779999999999876 99999999999 999999964431 0    1111   1223467


Q ss_pred             cCceEEecccCCCCC--CCcHHHHHHHHHcCC
Q 025101          192 SGKILMGSLFGGLKA--KSDIPILLKRYMDKE  221 (258)
Q Consensus       192 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~  221 (258)
                      |++++.++....+..  .+.++++.+++.+|+
T Consensus       156 k~i~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         156 RNITRERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             TTCEEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             cceEEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            899998876544322  234666777777763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=4.8e-26  Score=171.86  Aligned_cols=166  Identities=25%  Similarity=0.226  Sum_probs=139.2

Q ss_pred             cchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCC
Q 025101           47 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  126 (258)
Q Consensus        47 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~  126 (258)
                      ++.+.++.+++|||+++ +.+++++|++|||+|+|++|++++++++..|+.+|++++.+++|++.++++|+++++++.+ 
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-
Confidence            45677888999999996 6899999999999999999999999999999989999999999999999999999999988 


Q ss_pred             CCccHHHHHHHhcCC-CCCEEEEecCC---------------hhhHHHHHHhhhcCCceEEEecccCCCC----------
Q 025101          127 GDKSVSQIIIDMTDG-GADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGVDQPGS----------  180 (258)
Q Consensus       127 ~~~~~~~~i~~~~~~-~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~~~~~----------  180 (258)
                        +++.+.+.+++++ ++|++||++|.               +.+++.++++++++ |+++.+|.+.+..          
T Consensus        80 --~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g-G~v~~~G~~~~~~~~~~~~~~~~  156 (195)
T d1kola2          80 --TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKI  156 (195)
T ss_dssp             --SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCSCCTTCSSHHHHT
T ss_pred             --cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC-CEEEEeeecCCCcccchhhhhhc
Confidence              8999999999988 99999999984               35699999999999 9999999765322          


Q ss_pred             -ceeechHHHHhcCceEEecccCCCCCCCcHHHHHHHHHcC
Q 025101          181 -QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK  220 (258)
Q Consensus       181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  220 (258)
                       ..+++...++.|++++.+-   ....+..++++++++.++
T Consensus       157 ~~~~~~~~~~~~k~~~i~~g---~~~v~~~~~~Ll~~I~~~  194 (195)
T d1kola2         157 GSLSIRFGLGWAKSHSFHTG---QTPVMKYNRALMQAIMWD  194 (195)
T ss_dssp             TCCCCCHHHHHHTTCEEEES---SCCHHHHHHHHHHHHHTT
T ss_pred             CceeeeHHHHHhhcceeccC---CCchHHHHHHHHHHHHcC
Confidence             1234445567788887542   222245578888888776

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=8.5e-26  Score=167.45  Aligned_cols=149  Identities=14%  Similarity=0.126  Sum_probs=124.2

Q ss_pred             CCccchhhcchhhhhhhhhhh---hhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce
Q 025101           44 VPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  119 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~  119 (258)
                      +++.+|+.+++++.|||++++   +.....++++|||+|+ |++|++++|+||.+|+ +|++++++++|.+.++++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            578999999999999998764   3344455679999986 9999999999999999 8999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEec
Q 025101          120 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  199 (258)
Q Consensus       120 vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  199 (258)
                      ++|+++   .++.+   .+.+...|.++|++|++. +...+++++++ |+++.+|...+ ...+++...++.|++++.|+
T Consensus        80 vi~~~~---~~~~~---~l~~~~~~~vvD~Vgg~~-~~~~l~~l~~~-Griv~~G~~~~-~~~~~~~~~~~~k~~~i~G~  150 (177)
T d1o89a2          80 VLPRDE---FAESR---PLEKQVWAGAIDTVGDKV-LAKVLAQMNYG-GCVAACGLAGG-FTLPTTVMPFILRNVRLQGV  150 (177)
T ss_dssp             EEEGGG---SSSCC---SSCCCCEEEEEESSCHHH-HHHHHHTEEEE-EEEEECCCTTC-SCCCCCSHHHHHHCCEEEEC
T ss_pred             cccccc---HHHHH---HHHhhcCCeeEEEcchHH-HHHHHHHhccc-cceEeecccCC-ccccccHHHHHHCCCeEEEE
Confidence            999987   44432   222336899999999887 99999999999 99999996654 45566777888899999998


Q ss_pred             ccC
Q 025101          200 LFG  202 (258)
Q Consensus       200 ~~~  202 (258)
                      .+.
T Consensus       151 ~~~  153 (177)
T d1o89a2         151 DSV  153 (177)
T ss_dssp             CSS
T ss_pred             ecc
Confidence            643

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=1.2e-24  Score=159.71  Aligned_cols=154  Identities=14%  Similarity=0.108  Sum_probs=120.3

Q ss_pred             hhhhhhhhh---hhhhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCc
Q 025101           54 CGVSTGVGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  129 (258)
Q Consensus        54 ~~~~ta~~~---l~~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~  129 (258)
                      +++.|||.+   |.+....+++++|||+|+ |++|++++|+||.+|+ +|++++++++|.++++++|++.++++++    
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~----   77 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED----   77 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH----
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccc----
Confidence            456677754   444556677889999986 9999999999999999 9999999999999999999999998754    


Q ss_pred             cHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEecccCCCCceeechHHHHhcCceEEecccCCCCCCC
Q 025101          130 SVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS  208 (258)
Q Consensus       130 ~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (258)
                       ......+.+.+ ++|+|||++|++. ++.++++++++ |+++.+|...+ ...+++...++.|++++.|+..... ..+
T Consensus        78 -~~~~~~~~~~~~gvd~vid~vgg~~-~~~~~~~l~~~-G~iv~~G~~~g-~~~~~~~~~l~~k~~~i~G~~~~~~-~~~  152 (167)
T d1tt7a2          78 -VYDGTLKALSKQQWQGAVDPVGGKQ-LASLLSKIQYG-GSVAVSGLTGG-GEVPATVYPFILRGVSLLGIDSVYC-PMD  152 (167)
T ss_dssp             -HCSSCCCSSCCCCEEEEEESCCTHH-HHHHHTTEEEE-EEEEECCCSSC-SCEEECSHHHHTSCCEEEECCSSSC-CHH
T ss_pred             -hhchhhhcccCCCceEEEecCcHHH-HHHHHHHhccC-ceEEEeeccCC-CcccCCHHHHHHCCcEEEEEecCCC-CHH
Confidence             11122233334 8999999999888 99999999999 99999997664 5677888889999999999753321 123


Q ss_pred             cHHHHHHHH
Q 025101          209 DIPILLKRY  217 (258)
Q Consensus       209 ~~~~~~~~~  217 (258)
                      ...++.+.+
T Consensus       153 ~~~~~~~~l  161 (167)
T d1tt7a2         153 VRAAVWERM  161 (167)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            344455544

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=5.6e-17  Score=101.42  Aligned_cols=73  Identities=15%  Similarity=0.192  Sum_probs=66.1

Q ss_pred             CCccchhhcchhhhhhhhhhh---hhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025101           44 VPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  117 (258)
Q Consensus        44 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~  117 (258)
                      +|++||+.+++++.|||.+++   +....+++++|||+|+ |++|.+++|+++.+|+ +|+++++++++.++++++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            578999999999999998765   3456689999999986 9999999999999999 89999999999999999985

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=7.2e-13  Score=92.20  Aligned_cols=72  Identities=11%  Similarity=0.105  Sum_probs=62.2

Q ss_pred             CCCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE
Q 025101            3 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF   78 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~   78 (258)
                      |...+..-  +||+|+++..+|+|+||++++++.++++|+++++++|+++++++.|||++|.+.+  +.|++||++
T Consensus        60 G~E~~G~V--vGd~V~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1          60 GMEVVGVV--EGRRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             CCEEEEEE--TTEEEEEECSSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             eeeeEEee--ccceEEEEeccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            44444454  7999999988999999999999999999999999999999999999999987665  458888863

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2e-12  Score=92.36  Aligned_cols=74  Identities=15%  Similarity=0.234  Sum_probs=66.9

Q ss_pred             CCCCccccCCCCceeeeec-cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE
Q 025101            3 RDQTSRFKDLRGETIHHFV-SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF   78 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~   78 (258)
                      |+++.+|+  +||+|++.. .+|+|+||+.+|++.++++|+++++++|+++++...|+++++........|+++||+
T Consensus        76 G~~v~~~~--vGdrV~~~~~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1          76 GDNASAFK--KGDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             CTTCTTCC--TTCEEEESCCSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             cceeeccc--cCccccccccccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            56788898  999998654 459999999999999999999999999999999999999998888888999999874

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.28  E-value=1.1e-12  Score=96.57  Aligned_cols=57  Identities=14%  Similarity=0.097  Sum_probs=53.2

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL   80 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~   80 (258)
                      +|+|+||+++|++.++++|+++++++++++++++.|||+++ +.+++++|++|+|+|+
T Consensus       119 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         119 DGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             CCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             ccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            48999999999999999999999999999999999999986 6889999999999974

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.18  E-value=8.8e-12  Score=93.24  Aligned_cols=57  Identities=25%  Similarity=0.237  Sum_probs=52.8

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF   78 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~   78 (258)
                      +.|+|+||++++++.++++|+++++++++++.+++.|+++++......+.|++|||+
T Consensus       143 ~~Ggfaey~~v~~~~~~~iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         143 GTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             GTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             ccCCceEEEEEchHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            358999999999999999999999999999999999999998877888899999984

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.16  E-value=7.6e-12  Score=89.53  Aligned_cols=72  Identities=21%  Similarity=0.241  Sum_probs=60.3

Q ss_pred             CCCccccCCCCceeeee------ccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEE
Q 025101            4 DQTSRFKDLRGETIHHF------VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI   77 (258)
Q Consensus         4 ~~~~~~~~~~G~~v~~~------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI   77 (258)
                      ++...|+  .||+|+..      ..+|+|+||+.+|++.++++|++++ ++|++++++..||+.++....+++ |++|||
T Consensus        75 ~~~~~~~--~g~~v~~~~~~~~~~~~G~~aEy~~v~~~~~~~iP~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~  150 (152)
T d1xa0a1          75 SQHPRFR--EGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLE-RIAQEISLAELPQALKRILRGELR-GRTVVR  150 (152)
T ss_dssp             CCSSSCC--TTCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEE
T ss_pred             cCCCccc--cCCEEEEecCccccccCCCcceeeeehhhccccCCCCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEE
Confidence            4556677  99999743      2348999999999999999999998 578889889999988888888875 999999


Q ss_pred             Ec
Q 025101           78 FG   79 (258)
Q Consensus        78 ~G   79 (258)
                      +|
T Consensus       151 l~  152 (152)
T d1xa0a1         151 LA  152 (152)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.12  E-value=4.6e-11  Score=87.06  Aligned_cols=53  Identities=17%  Similarity=0.189  Sum_probs=48.3

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI   77 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI   77 (258)
                      .|+|+||+++|++.++++|++++++.++++.+++.|||+++ +...+ .|++|||
T Consensus       118 ~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         118 DGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             ccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            48999999999999999999999998988888999999997 56777 8999998

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.1e-10  Score=82.94  Aligned_cols=72  Identities=10%  Similarity=0.114  Sum_probs=58.3

Q ss_pred             CCCCccccCCCCceee-eeccccceeeeEEEecceEEEcCCCCCccchh--hcchhhhhhhhhhhhhcCCCCCCEEEE
Q 025101            3 RDQTSRFKDLRGETIH-HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC--LLSCGVSTGVGAAWRTANVEVGSTVVI   77 (258)
Q Consensus         3 ~~~~~~~~~~~G~~v~-~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa--~~~~~~~ta~~~l~~~~~~~~g~~vlI   77 (258)
                      |.++..|+  +||+|+ .....|+|+||++++++.++++|+++++++++  +++....++++++.+ .++++|++|||
T Consensus        72 G~~v~~~~--vGdrV~~~~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1          72 GSGVKHIK--AGDRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             CTTCCSCC--TTCEEEESCCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             eeeccccc--ccceeeeeccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence            56777888  999997 34467999999999999999999999887554  456666777777654 67899999998

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=7.5e-11  Score=87.36  Aligned_cols=55  Identities=15%  Similarity=0.176  Sum_probs=49.1

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF   78 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~   78 (258)
                      +|+|+||+++|++.++++|+++++++|+.+.+.+.|||+++ +.++++.|++|||.
T Consensus       132 ~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         132 QGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             CCSSBSEEEEEGGGEEECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             ccceeeEEEeehHHeEECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            48999999999999999999999998887765678999986 68899999999975

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=98.98  E-value=3e-12  Score=92.65  Aligned_cols=73  Identities=11%  Similarity=0.090  Sum_probs=59.4

Q ss_pred             CCccccCCCCceeeee------ccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE
Q 025101            5 QTSRFKDLRGETIHHF------VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF   78 (258)
Q Consensus         5 ~~~~~~~~~G~~v~~~------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~   78 (258)
                      +...++  .|++|+..      ..+|+|+||+++|++.++++|+++++++|+++++.++|||.++. ...+..+++|||.
T Consensus        76 ~~~~~~--~g~~v~~~~~~~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~  152 (162)
T d1tt7a1          76 NDPRFA--EGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQN  152 (162)
T ss_dssp             SSTTCC--TTCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTT
T ss_pred             cccccc--cceeeEeeeccceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEE
Confidence            445566  89999743      23589999999999999999999999999999999999998754 3345556778887


Q ss_pred             cc
Q 025101           79 GL   80 (258)
Q Consensus        79 G~   80 (258)
                      |+
T Consensus       153 ga  154 (162)
T d1tt7a1         153 RI  154 (162)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2e-10  Score=84.70  Aligned_cols=56  Identities=13%  Similarity=0.160  Sum_probs=46.4

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCH
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS   82 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~   82 (258)
                      +|+|+||+++++++++++|++++++++++++  +.+|++++ +..++++|++||| |+|+
T Consensus       125 ~G~~aey~~~~~~~~~~lP~~~~~~~aa~~p--l~~a~~a~-~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         125 DGNLCRFYKHNAAFCYKLPDNVKPLVTHRFP--LEKALEAF-ETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             CCSCBSEEEEEGGGEEECCTTCGGGEEEEEE--GGGHHHHH-HHHHTTCCSEEEE-ECCT
T ss_pred             cccceEEEEEchHHEEECCCCCCHHHHHHHH--HHHHHHHH-HHhCCCCCCEEEE-EeCC
Confidence            3789999999999999999999999987654  56677764 6678899999998 5554

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.86  E-value=7.1e-10  Score=82.41  Aligned_cols=62  Identities=27%  Similarity=0.253  Sum_probs=52.0

Q ss_pred             eeeeccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE
Q 025101           17 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF   78 (258)
Q Consensus        17 v~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~   78 (258)
                      ++++.+.|+|+||+++|+..++++|+++++++++++++++.|++.++.....-+.+++|||+
T Consensus       136 v~~~~g~GgfAey~vvp~~~~~~vp~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         136 ILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             EBCCTTTCCSBSEEEEEGGGEEECCTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             eecccccccceeEEEechHHEEECCCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            34444568999999999999999999999999999999999999987554445678888874

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=98.86  E-value=5.2e-12  Score=92.67  Aligned_cols=82  Identities=9%  Similarity=-0.002  Sum_probs=64.2

Q ss_pred             CCCccccCCCCceeeee-ccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhh-hcCCCCCCEEEEEc-c
Q 025101            4 DQTSRFKDLRGETIHHF-VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFG-L   80 (258)
Q Consensus         4 ~~~~~~~~~~G~~v~~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~g~~vlI~G-~   80 (258)
                      .+++.++  .||+|+.. ...|+|+||+++|++.++++|++++.+.+  +.+...|||+++.. ..++++|++|||+| +
T Consensus        89 ~~~~~~~--~g~~v~~~~~~~g~~aey~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa  164 (175)
T d1gu7a1          89 SNVSSLE--AGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVA  164 (175)
T ss_dssp             TTCCSCC--TTCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHH
T ss_pred             ccccccc--cccceeccccccccccceeeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECcc
Confidence            4566677  99999854 34589999999999999999997654333  44577889988754 46799999999997 4


Q ss_pred             -CHHHHHHHH
Q 025101           81 -GSIGLAVAE   89 (258)
Q Consensus        81 -g~~G~~a~~   89 (258)
                       |++|++++|
T Consensus       165 ~~gvG~~~iQ  174 (175)
T d1gu7a1         165 NSKDGKQLIT  174 (175)
T ss_dssp             TGGGSCEEEE
T ss_pred             chhhhheEEe
Confidence             679988766

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.82  E-value=2e-09  Score=78.48  Aligned_cols=54  Identities=15%  Similarity=0.070  Sum_probs=46.2

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEE
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF   78 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~   78 (258)
                      +|+|+||+.++++.++++|++++++.++++.+++.|+++.+ +. ...+|++|||+
T Consensus       122 ~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~t~~~~~-~~-g~~~G~~VLVl  175 (175)
T d1llua1         122 NGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQM-RA-GQIEGRIVLEM  175 (175)
T ss_dssp             CCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHHHHHHHH-HT-TCCSSEEEEEC
T ss_pred             ccccceEEEechHHEEECCCCCChhHHHHHHhHHHHHHHHH-Hh-CCCCCCEEEeC
Confidence            37899999999999999999999998888888999998875 33 34479999984

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=2.8e-09  Score=75.14  Aligned_cols=57  Identities=11%  Similarity=0.058  Sum_probs=47.5

Q ss_pred             CCccccCCCCceeeee------ccccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhh
Q 025101            5 QTSRFKDLRGETIHHF------VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA   63 (258)
Q Consensus         5 ~~~~~~~~~G~~v~~~------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l   63 (258)
                      +...+.  .||+++..      ..+|+|+||+++|++.++++|+++|+++||++++++.||+.++
T Consensus        73 ~~~~~~--~g~~v~~~~~~~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~  135 (146)
T d1o89a1          73 EDPRFH--AGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN  135 (146)
T ss_dssp             CSTTCC--TTCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHT
T ss_pred             ccCCcc--ceeeEEeecccceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            344565  89999732      2359999999999999999999999999999999988886653

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.75  E-value=5.8e-09  Score=75.70  Aligned_cols=54  Identities=15%  Similarity=0.145  Sum_probs=42.5

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEcc
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL   80 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~   80 (258)
                      +|+|+||+++|+++++++|++++++.|++ . +..++++.+. ...+ +|++|||+|.
T Consensus       117 ~G~~aey~~v~~~~~~~iP~~~~~e~A~l-~-~~~~~~~~~~-~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         117 DGGYAEYCRAAADYVVKIPDNTIIEVQPL-E-KINEVFDRML-KGQI-NGRVVLTLED  170 (171)
T ss_dssp             CCSSBSEEEEEGGGCEECCTTCCEEEEEG-G-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred             cCccccceEecHHHEEECCCCCCHHHHHH-H-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence            38999999999999999999999876654 4 4566776653 3444 5999999984

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.68  E-value=1.8e-08  Score=74.48  Aligned_cols=54  Identities=24%  Similarity=0.346  Sum_probs=45.0

Q ss_pred             cceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           24 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        24 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      |+|+||+++++..++++|++++++++                         +++.|+|++|++++|+++.+|+.+|+++
T Consensus       140 g~fae~~~v~~~~~~~ip~~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         140 SSFATYALSRENNTVKVTKDFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             CCSBSEEEEEGGGEEEECTTCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             cccceeEEEehHHEEECCCCCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            68999999999999999998876543                         3456789999999999999999556554

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.67  E-value=8.7e-12  Score=93.18  Aligned_cols=69  Identities=16%  Similarity=0.110  Sum_probs=54.0

Q ss_pred             ccceeeeEEEec--ceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 025101           23 VSSFSEYTVLDI--AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA   96 (258)
Q Consensus        23 ~g~~~~~~~v~~--~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~   96 (258)
                      .|+|+||+++|.  .+++++|++.+..+++++..++.++++++ ...+.+.++    +|+|++|++++|+||.+|+
T Consensus       131 ~Gg~aeyv~vp~~~~~l~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g~----~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         131 TGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYGE----FDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             CCCSBSEEEESSHHHHCEECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHHH----HHHTCSCEEEECTTCSSCC
T ss_pred             ccccccEEEeehHHCeEEECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCeE----EeeCHHHHHHHHHHHHcCC
Confidence            379999999985  36999999877677777777888888875 344444443    5899999999999998885

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.65  E-value=5.9e-09  Score=76.30  Aligned_cols=68  Identities=13%  Similarity=0.111  Sum_probs=52.0

Q ss_pred             CCCCccccCCCCce--------eeeec--------cccceeeeEEEe-cceEEEcCCCCCccchhhcchhhhhhhhhhhh
Q 025101            3 RDQTSRFKDLRGET--------IHHFV--------SVSSFSEYTVLD-IAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR   65 (258)
Q Consensus         3 ~~~~~~~~~~~G~~--------v~~~~--------~~g~~~~~~~v~-~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~   65 (258)
                      +|+.|.+| +.|..        .+++.        .+|+|+||++++ ++.++++|++++.++      ++.+|++++ +
T Consensus        98 ~Cg~C~~C-~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l~~~~------pl~~A~~a~-~  169 (184)
T d1vj0a1          98 TCGECYWC-KVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHRL------PLKEANKAL-E  169 (184)
T ss_dssp             CCSSSHHH-HTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTCCEEE------EGGGHHHHH-H
T ss_pred             ccccChhH-hCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCCCHHH------HHHHHHHHH-H
Confidence            57888887 77763        22322        158999999995 678999999998753      355678875 7


Q ss_pred             hcCCCCCCEEEEE
Q 025101           66 TANVEVGSTVVIF   78 (258)
Q Consensus        66 ~~~~~~g~~vlI~   78 (258)
                      .+++++|++|||+
T Consensus       170 ~~~~~~G~~VlI~  182 (184)
T d1vj0a1         170 LMESREALKVILY  182 (184)
T ss_dssp             HHHHTSCSCEEEE
T ss_pred             HhCCCcCCEEEEe
Confidence            7899999999997

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=98.57  E-value=2.6e-08  Score=74.18  Aligned_cols=54  Identities=24%  Similarity=0.206  Sum_probs=45.9

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEc
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG   79 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G   79 (258)
                      .|+|+||+++|+..++++|++++++.++++.+++.++++++.   .+++|++|.|+.
T Consensus       147 ~G~faey~~v~~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~---~~k~G~~V~vi~  200 (202)
T d1e3ia1         147 VSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESINDAID---LMKEGKSIRTIL  200 (202)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCGGGGEEEEEEGGGHHHHHH---HHHTTCCSEEEE
T ss_pred             cCCceEEEEEehhhEEECCCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEEE
Confidence            389999999999999999999999998888888888887753   246899888764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.48  E-value=4.7e-07  Score=63.98  Aligned_cols=98  Identities=22%  Similarity=0.227  Sum_probs=74.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--eEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      +..+|+|+|+|..|+.+++.|+.+|+ +|.+++.+.++++.++.....  ......+   +.+.+.++     ..|+||.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~---~~l~~~~~-----~aDivI~  101 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVA-----EADLLIG  101 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHH-----TCSEEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhhh---hhHHHhhc-----cCcEEEE
Confidence            46799999999999999999999999 999999999999988875422  2222222   34444443     5999999


Q ss_pred             ecCCh------hhHHHHHHhhhcCCceEEEecccCC
Q 025101          149 CVGLA------SLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       149 ~~g~~------~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      ++--+      ..-..+++.++|+ ..++.+...++
T Consensus       102 aalipG~~aP~lIt~~mv~~Mk~G-SVIVDvaidqG  136 (168)
T d1pjca1         102 AVLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQG  136 (168)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTC
T ss_pred             eeecCCcccCeeecHHHHhhcCCC-cEEEEeecCCC
Confidence            77321      1356889999999 99999986554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.42  E-value=1.5e-06  Score=62.21  Aligned_cols=104  Identities=20%  Similarity=0.286  Sum_probs=75.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCC-----C----------C---CccHH
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN-----C----------G---DKSVS  132 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~-----~----------~---~~~~~  132 (258)
                      +..+|+|+|+|..|+.+++.|+.+|+ +|.++|.+.++++.+++++...+ +...     .          +   -....
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i-~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFI-TVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEEC-CC-----------------------CCHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceE-EEeccccccccccccchhhcCHHHHHHHH
Confidence            46799999999999999999999999 99999999999999999886432 1110     0          0   01122


Q ss_pred             HHHHHhcCCCCCEEEEecCC---h---hhHHHHHHhhhcCCceEEEecccCC
Q 025101          133 QIIIDMTDGGADYCFECVGL---A---SLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       133 ~~i~~~~~~~~d~v~d~~g~---~---~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      +.+.+... ..|+||-++--   +   ..-+.+++.++|+ ..++.+...++
T Consensus       106 ~~l~~~l~-~aDlVI~talipG~~aP~lit~~mv~~Mk~G-SVIVDvaidqG  155 (183)
T d1l7da1         106 EAVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAG  155 (183)
T ss_dssp             HHHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGT
T ss_pred             HHHHHHHH-hhhhheeeeecCCcccceeehHHHHHhcCCC-cEEEEEeecCC
Confidence            23333222 69999987632   1   1356899999999 99999986554

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.24  E-value=6.1e-06  Score=63.16  Aligned_cols=106  Identities=14%  Similarity=0.121  Sum_probs=71.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceEEcCCCCCCccHHH----HHHHhcCCCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQ----IIIDMTDGGAD  144 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~----~i~~~~~~~~d  144 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++...++-.-+..+++-.+    .+.+.. +.+|
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~-g~iD   82 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRL-GTLN   82 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHH-CSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHh-CCCC
Confidence            6889999986 8999999999999999 999999998887654 557754333222222233222    332222 3799


Q ss_pred             EEEEecCChh-------------------------hHHHHHHhhhcCCceEEEecccCC
Q 025101          145 YCFECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       145 ~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      +++++.|...                         ..+.++..++..+|+++.+++...
T Consensus        83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~  141 (253)
T d1hxha_          83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSS  141 (253)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhh
Confidence            9999888521                         344566666543399999986543

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.24  E-value=1.1e-06  Score=63.74  Aligned_cols=52  Identities=13%  Similarity=0.255  Sum_probs=37.3

Q ss_pred             cceeeeEEEecce-EEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEE
Q 025101           24 SSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI   77 (258)
Q Consensus        24 g~~~~~~~v~~~~-~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI   77 (258)
                      |+|+||+++++.. ++++|+..+.+.++....++.+|++++ ...++ .|++|||
T Consensus       124 G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         124 GAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             CSSBSEEEESCGGGEEECSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             cccccEEEEEhHHeEEECCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            8999999997654 667666554444444456888999886 55565 5889987

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.22  E-value=6.2e-07  Score=66.87  Aligned_cols=111  Identities=20%  Similarity=0.228  Sum_probs=77.2

Q ss_pred             hcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceEEcCCCC
Q 025101           51 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNC  126 (258)
Q Consensus        51 ~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~  126 (258)
                      ++..+...|..  .+.+.+++|++||.+|+|. |..++-+++..|. +|++++.+++-.+.+    +++|.+++..... 
T Consensus        60 ~is~P~~~a~m--l~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g-  134 (215)
T d1jg1a_          60 TVSAPHMVAIM--LEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILG-  134 (215)
T ss_dssp             EECCHHHHHHH--HHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-
T ss_pred             hhhhhhhHHHH--HHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEEC-
Confidence            34445555543  4778999999999999974 8888899988886 899999998766655    4467654432222 


Q ss_pred             CCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEe
Q 025101          127 GDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       127 ~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                         +...   .+... .||.|+-+.+-...-+..++.|+++ |+++..
T Consensus       135 ---d~~~---g~~~~~pfD~Iiv~~a~~~ip~~l~~qL~~g-GrLv~p  175 (215)
T d1jg1a_         135 ---DGSK---GFPPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIP  175 (215)
T ss_dssp             ---CGGG---CCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             ---cccc---CCcccCcceeEEeecccccCCHHHHHhcCCC-CEEEEE
Confidence               1111   11122 7999997666555457788999999 998864

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=98.22  E-value=8.3e-06  Score=62.17  Aligned_cols=104  Identities=23%  Similarity=0.187  Sum_probs=73.1

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccH----HHHHHHhcCCCC
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSV----SQIIIDMTDGGA  143 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~----~~~i~~~~~~~~  143 (258)
                      -+|+++||+|+ +++|.+.++.+...|+ +|++.++++++.+.+++.+...+ .|-.+   ++-    .+.+.+.. |++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~-G~i   77 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLED---ERERVRFVEEAAYAL-GRV   77 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTC---HHHHHHHHHHHHHHH-SCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHHHHHhc-CCC
Confidence            36899999986 8999999999999999 99999999998888888776422 33333   332    22333333 379


Q ss_pred             CEEEEecCChh-------------------------hHHHHHHhhhcC-CceEEEecccCC
Q 025101          144 DYCFECVGLAS-------------------------LVQEAYACCRKG-WGKTIVLGVDQP  178 (258)
Q Consensus       144 d~v~d~~g~~~-------------------------~~~~~~~~l~~~-~G~~v~~g~~~~  178 (258)
                      |+++++.|...                         ..+.++..+... +|+++.++....
T Consensus        78 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~  138 (248)
T d2d1ya1          78 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQG  138 (248)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             CeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccc
Confidence            99999887511                         344556666542 289998876543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=6.7e-06  Score=62.78  Aligned_cols=101  Identities=21%  Similarity=0.196  Sum_probs=68.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceE--EcCCCCCCccHHH----HHHHhcCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEF--VNSKNCGDKSVSQ----IIIDMTDGG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v--i~~~~~~~~~~~~----~i~~~~~~~  142 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.+ ++....  .|-.+   ++-.+    .+.+.. ++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~---~~~v~~~~~~~~~~~-g~   79 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ---EDDVKTLVSETIRRF-GR   79 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS---HHHHHHHHHHHHHHH-SC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCC---HHHHHHHHHHHHHhc-CC
Confidence            6899999987 8999999999999999 99999999988877655 442222  23333   33222    222322 37


Q ss_pred             CCEEEEecCChh--------------------------hHHHHHHhhhcCCceEEEeccc
Q 025101          143 ADYCFECVGLAS--------------------------LVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       143 ~d~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      +|+++++.|...                          ..+.++..++.++|+++.++..
T Consensus        80 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~  139 (250)
T d1ydea1          80 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSL  139 (250)
T ss_dssp             CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCH
T ss_pred             CCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccc
Confidence            999999887410                          3445566665433899888754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.14  E-value=6.5e-06  Score=58.82  Aligned_cols=73  Identities=15%  Similarity=0.169  Sum_probs=56.3

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCC
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      .+..++.++++|||+|+|+.+.+++..++..|++++.++.|+.++.+.+.+ ++... ++...              ...
T Consensus         9 l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~-~~~~~--------------~~~   73 (167)
T d1npya1           9 IEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY-INSLE--------------NQQ   73 (167)
T ss_dssp             HHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE-ESCCT--------------TCC
T ss_pred             HHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhh-hhccc--------------ccc
Confidence            355666788999999999999999999999998889999999998776644 55433 22221              126


Q ss_pred             CCEEEEecC
Q 025101          143 ADYCFECVG  151 (258)
Q Consensus       143 ~d~v~d~~g  151 (258)
                      +|+|++|++
T Consensus        74 ~DliINaTp   82 (167)
T d1npya1          74 ADILVNVTS   82 (167)
T ss_dssp             CSEEEECSS
T ss_pred             hhhheeccc
Confidence            899999876

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=1.1e-05  Score=61.36  Aligned_cols=101  Identities=22%  Similarity=0.319  Sum_probs=68.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc---eEEcCCCCCCccHH---HHHHHhcCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT---EFVNSKNCGDKSVS---QIIIDMTDGG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~---~vi~~~~~~~~~~~---~~i~~~~~~~  142 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++++..   ...|-.+  .++..   +.+.+.. ++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~-g~   78 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTD--PASIESVLEKIRAEF-GE   78 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHT-CS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC--HHHhhhhhhhhhccc-CC
Confidence            5889999987 8999999999999999 999999999887655 445533   2233333  12222   2333332 37


Q ss_pred             CCEEEEecCChh-------------------------hHHHHHHhhh--cCCceEEEeccc
Q 025101          143 ADYCFECVGLAS-------------------------LVQEAYACCR--KGWGKTIVLGVD  176 (258)
Q Consensus       143 ~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~~G~~v~~g~~  176 (258)
                      +|+++++.|...                         ..+.++..+.  .+ |+++.+++.
T Consensus        79 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~II~isS~  138 (243)
T d1q7ba_          79 VDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRH-GRIITIGSV  138 (243)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCH
T ss_pred             cceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCC-CEeeeecch
Confidence            999999887521                         3455666663  45 999999854

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.2e-05  Score=58.69  Aligned_cols=77  Identities=17%  Similarity=0.258  Sum_probs=56.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce--EEcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE--FVNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~--vi~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++++...  ..|-.+   ++-.+.+.+.. +.+|++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~-g~iDil   80 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD---WEATERALGSV-GPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTC-CCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHh-CCceEE
Confidence            6899999987 8999999999999999 999999999887755 4454322  334444   44444444333 279999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      +++.|.
T Consensus        81 VnnAg~   86 (244)
T d1pr9a_          81 VNNAAV   86 (244)
T ss_dssp             EECCCC
T ss_pred             Eecccc
Confidence            998875

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=98.08  E-value=4.3e-05  Score=58.45  Aligned_cols=106  Identities=15%  Similarity=0.171  Sum_probs=68.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceEEcCCCCCCccHHH----HHHHhcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQ----IIIDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~----~i~~~~~~  141 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+    ++.|.......-+.++++-.+    .+.+..++
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            6899999987 8999999999988999 999999998887544    234433222122222233322    33333334


Q ss_pred             CCCEEEEecCChh-------------------------hHHHHHHhhh--cCCceEEEecccCC
Q 025101          142 GADYCFECVGLAS-------------------------LVQEAYACCR--KGWGKTIVLGVDQP  178 (258)
Q Consensus       142 ~~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~~G~~v~~g~~~~  178 (258)
                      .+|+++++.|...                         ..+.++..+.  .+ |+++.+++...
T Consensus        86 ~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~Ii~isS~~~  148 (259)
T d2ae2a_          86 KLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASER-GNVVFISSVSG  148 (259)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSS-EEEEEECCGGG
T ss_pred             CceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcc-ccccccccccc
Confidence            6999999988521                         2334455553  34 89998886543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.08  E-value=1.2e-05  Score=56.74  Aligned_cols=79  Identities=18%  Similarity=0.232  Sum_probs=60.3

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      +...--++.+|||+|+|.+|.++++.+...|+++++++.|+.+|.+ +++++|. .+++.     +++.+.+.     .+
T Consensus        17 ~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~-~~~~~-----~~~~~~l~-----~~   85 (159)
T d1gpja2          17 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-EAVRF-----DELVDHLA-----RS   85 (159)
T ss_dssp             HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-EECCG-----GGHHHHHH-----TC
T ss_pred             HHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-ccccc-----hhHHHHhc-----cC
Confidence            3333347889999999999999999999899978999999987765 6677885 34444     34555554     59


Q ss_pred             CEEEEecCChh
Q 025101          144 DYCFECVGLAS  154 (258)
Q Consensus       144 d~v~d~~g~~~  154 (258)
                      |+||.|++.+.
T Consensus        86 Divi~atss~~   96 (159)
T d1gpja2          86 DVVVSATAAPH   96 (159)
T ss_dssp             SEEEECCSSSS
T ss_pred             CEEEEecCCCC
Confidence            99999998753

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.08  E-value=3.5e-06  Score=64.14  Aligned_cols=101  Identities=13%  Similarity=0.110  Sum_probs=69.5

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cC-CceEEcCCCCCCccHHHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FG-VTEFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~~i~~  137 (258)
                      ...+++++|++||-.|+|+ |.++..+|+..|. .+|++++.+++..+.+++    ++ ..++-...    .++.    +
T Consensus        78 i~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~----~Di~----~  148 (250)
T d1yb2a1          78 IMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR----SDIA----D  148 (250)
T ss_dssp             ---CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC----SCTT----T
T ss_pred             HHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEE----eeee----c
Confidence            4678899999999999875 7888888887653 389999999998888765    33 23221111    1221    2


Q ss_pred             hcCC-CCCEEE-EecCChhhHHHHHHhhhcCCceEEEec
Q 025101          138 MTDG-GADYCF-ECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~-~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ...+ .||.|| |.......+..+.+.|+|+ |+++.+.
T Consensus       149 ~~~~~~fD~V~ld~p~p~~~l~~~~~~LKpG-G~lv~~~  186 (250)
T d1yb2a1         149 FISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYL  186 (250)
T ss_dssp             CCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEE
T ss_pred             ccccceeeeeeecCCchHHHHHHHHHhcCCC-ceEEEEe
Confidence            2223 799998 4434445689999999999 9998764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=2.7e-06  Score=63.41  Aligned_cols=108  Identities=20%  Similarity=0.283  Sum_probs=74.2

Q ss_pred             hhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCc
Q 025101           55 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDK  129 (258)
Q Consensus        55 ~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~  129 (258)
                      +...|.  +.+.+++++|++||-+|+|. |..++.+++..|. .+|++++.+++..+.+++    .+..++.-...    
T Consensus        61 P~~~a~--~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~----  133 (213)
T d1dl5a1          61 PSLMAL--FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG----  133 (213)
T ss_dssp             HHHHHH--HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES----
T ss_pred             chhhHH--HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccC----
Confidence            444444  34778899999999999986 8888899998763 289999999988777654    44433221111    


Q ss_pred             cHHHHHHHhc-CCCCCEEEEecCChhhHHHHHHhhhcCCceEEEe
Q 025101          130 SVSQIIIDMT-DGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       130 ~~~~~i~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      +..+   ... .+.||+|+.+.+-....+..++.|+|+ |+++..
T Consensus       134 d~~~---~~~~~~~fD~I~~~~~~~~~p~~l~~~LkpG-G~lv~p  174 (213)
T d1dl5a1         134 DGYY---GVPEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP  174 (213)
T ss_dssp             CGGG---CCGGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEE
T ss_pred             chHH---ccccccchhhhhhhccHHHhHHHHHHhcCCC-cEEEEE
Confidence            1110   111 126999998776655457788999999 998763

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.07  E-value=2e-06  Score=60.04  Aligned_cols=67  Identities=15%  Similarity=0.117  Sum_probs=49.0

Q ss_pred             CCCccccCCCCceeeeeccccceeeeEEEecceEEEcCCCCC-----ccchhhcchhhhh-hhhhhhhhcCCCCCCEEEE
Q 025101            4 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP-----PNRACLLSCGVST-GVGAAWRTANVEVGSTVVI   77 (258)
Q Consensus         4 ~~~~~~~~~~G~~v~~~~~~g~~~~~~~v~~~~~~~~p~~~~-----~~~aa~~~~~~~t-a~~~l~~~~~~~~g~~vlI   77 (258)
                      ++...|+  +||+|+++   ++|+||.+++++.+.++|+..+     ....+++....+| ||..+.  ...+.|++||+
T Consensus        74 S~~~~f~--~GD~V~g~---~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~--~~~k~Getvv~  146 (147)
T d1v3va1          74 SKNSAFP--AGSIVLAQ---SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEML--NGANLGKAVVT  146 (147)
T ss_dssp             ESCTTSC--TTCEEEEC---CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHH--TTCCSSEEEEE
T ss_pred             eCCCccc--CCCEEEEc---cCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhh--CCCCCCCEEEe
Confidence            4566788  99999964   5799999999999999987543     3344556666666 554554  44567999986

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=3e-05  Score=58.78  Aligned_cols=77  Identities=13%  Similarity=0.240  Sum_probs=55.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce-E--EcCCCCCCccH-H---HHHHHhcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSV-S---QIIIDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v--i~~~~~~~~~~-~---~~i~~~~~~  141 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++++... .  .|-.+   ++- .   +.+.+.. +
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~-g   79 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ---PAQWKAAVDTAVTAF-G   79 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC---HHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCC---HHHHHHHHHHHHHHh-C
Confidence            6899999987 8999999999999999 999999999887655 4455322 2  23333   332 2   3333333 2


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|+++++.|.
T Consensus        80 ~idilinnAG~   90 (244)
T d1nffa_          80 GLHVLVNNAGI   90 (244)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCeEEEECCcc
Confidence            79999998886

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.04  E-value=3.7e-08  Score=71.52  Aligned_cols=54  Identities=11%  Similarity=0.097  Sum_probs=37.2

Q ss_pred             ccceeeeEEEec--ceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHH
Q 025101           23 VSSFSEYTVLDI--AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV   87 (258)
Q Consensus        23 ~g~~~~~~~v~~--~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a   87 (258)
                      .|+|+||+++|.  .+++++|++++.++++...   .+++..+        ++.++|+|+|++|+++
T Consensus       117 ~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~---~~~~~~~--------~~~vlv~g~gp~gl~a  172 (177)
T d1jqba1         117 DGVFGEYFHVNDADMNLAILPKDVDLSKLVTHV---YHGFDHI--------EEALLLMKDKPKDLIK  172 (177)
T ss_dssp             CCSSBSSEEESSHHHHCEECCTTSCGGGGEEEE---EESGGGH--------HHHHHHHHHCCTTCSE
T ss_pred             ChhcCeeEEEEhhhCeEEECCCCcchHHHHHHH---HHHHHHh--------cCceEEECCCHHHhhe
Confidence            389999999986  4689999999987765432   2223222        3447777888777654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=98.02  E-value=3e-05  Score=59.17  Aligned_cols=103  Identities=19%  Similarity=0.291  Sum_probs=68.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce---EEcCCCCCCccHH---HHHHHhcCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE---FVNSKNCGDKSVS---QIIIDMTDGG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~---~~i~~~~~~~  142 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++...   ..|-.+  .++..   +.+.+.. ++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~-g~   79 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI--EEDWQRVVAYAREEF-GS   79 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC--HHHHHHHHHHHHHHH-SC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCC--HHHHHHHHHHHHHHc-CC
Confidence            6899999987 8999999999888999 999999998887654 5566332   223333  12222   2333333 27


Q ss_pred             CCEEEEecCChh-------------------------hHHHHHHhhh--cCCceEEEecccCC
Q 025101          143 ADYCFECVGLAS-------------------------LVQEAYACCR--KGWGKTIVLGVDQP  178 (258)
Q Consensus       143 ~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~~G~~v~~g~~~~  178 (258)
                      +|+++++.|...                         ..+.++..+.  .+ |+++.+++...
T Consensus        80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~-G~II~isS~~~  141 (254)
T d1hdca_          80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGG-GSIVNISSAAG  141 (254)
T ss_dssp             CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGG
T ss_pred             ccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCC-Ceecccccchh
Confidence            999999887521                         2334444443  35 99999986543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.01  E-value=3.2e-05  Score=58.88  Aligned_cols=101  Identities=18%  Similarity=0.305  Sum_probs=68.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----HhcCCceE---EcCCCCCCccH----HHHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-----KRFGVTEF---VNSKNCGDKSV----SQIIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-----~~~g~~~v---i~~~~~~~~~~----~~~i~~  137 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+     ++.|....   .|-.+   ++-    .+.+.+
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~---~~~v~~~~~~~~~   79 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN---YEEVKKLLEAVKE   79 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCC---HHHHHHHHHHHHH
Confidence            5899999987 8999999999999999 999999998775432     34564322   23333   332    233333


Q ss_pred             hcCCCCCEEEEecCChh-------------------------hHHHHHHhhhcC-CceEEEeccc
Q 025101          138 MTDGGADYCFECVGLAS-------------------------LVQEAYACCRKG-WGKTIVLGVD  176 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~-~G~~v~~g~~  176 (258)
                      .. +++|+++++.|...                         ..+.++..+... +|+++.++..
T Consensus        80 ~~-g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~  143 (251)
T d1vl8a_          80 KF-GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL  143 (251)
T ss_dssp             HH-SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred             Hc-CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence            33 27999999987521                         345566777532 2799888753

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=98.00  E-value=3.7e-05  Score=58.88  Aligned_cols=78  Identities=26%  Similarity=0.386  Sum_probs=53.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce---EEcCCCCCCccHH---HHHHHhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE---FVNSKNCGDKSVS---QIIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~---~~i~~~~  139 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+    ++.|...   ..|-.+  .+++.   +.+.+..
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS--EEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            6899999987 8999999999988999 999999998877654    3345432   223333  12222   3333333


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                       |.+|+++++.|.
T Consensus        81 -g~iDilVnnaG~   92 (260)
T d1zema1          81 -GKIDFLFNNAGY   92 (260)
T ss_dssp             -SCCCEEEECCCC
T ss_pred             -CCCCeehhhhcc
Confidence             379999998774

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=4.4e-05  Score=57.84  Aligned_cols=106  Identities=16%  Similarity=0.195  Sum_probs=69.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-e--EEcCCCCCCccHHHHHHHhc--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-E--FVNSKNCGDKSVSQIIIDMT--D  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~--vi~~~~~~~~~~~~~i~~~~--~  140 (258)
                      .|+.+||+|+ +++|...+..+...|+ +|+++++++++.+.+    ++.|.. .  ..|..+  .++....++...  -
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN--REDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHc
Confidence            6899999987 7999998888888999 999999999887654    334433 1  233333  122222333222  2


Q ss_pred             CCCCEEEEecCChh-------------------------hHHHHHHhhhcC-CceEEEecccCCC
Q 025101          141 GGADYCFECVGLAS-------------------------LVQEAYACCRKG-WGKTIVLGVDQPG  179 (258)
Q Consensus       141 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~-~G~~v~~g~~~~~  179 (258)
                      +.+|+++++.|...                         ..+..+..+... +|+++.+++..+.
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~  147 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGH  147 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-C
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhc
Confidence            37999999988621                         234555555432 3889988866543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.98  E-value=6.8e-05  Score=57.32  Aligned_cols=103  Identities=20%  Similarity=0.160  Sum_probs=66.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc---eEEcCCCCCCccH----HHHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT---EFVNSKNCGDKSV----SQIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~vi~~~~~~~~~~----~~~i~~~  138 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+..   ...|..+   ++-    .+.+.+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL---RPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC---HHHHHHHHHHHHHH
Confidence            5899999987 8999999999999999 9999999988766542    23322   1233333   332    2333334


Q ss_pred             cCCCCCEEEEecCChh-------------------------hHHHHHHhhh--cCCceEEEecccCC
Q 025101          139 TDGGADYCFECVGLAS-------------------------LVQEAYACCR--KGWGKTIVLGVDQP  178 (258)
Q Consensus       139 ~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~~G~~v~~g~~~~  178 (258)
                      .++.+|+++++.|...                         ..+.++..+.  .+ |+++.++....
T Consensus        83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Iv~isS~~~  148 (259)
T d1xq1a_          83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGC-GNIIFMSSIAG  148 (259)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CEEEEEC----
T ss_pred             hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccc-ccccccccccc
Confidence            4457999999988521                         2344455553  34 89998876543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.97  E-value=2e-05  Score=60.50  Aligned_cols=101  Identities=18%  Similarity=0.285  Sum_probs=73.4

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCC-ceE-EcCCCCCCccHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGV-TEF-VNSKNCGDKSVSQII  135 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~-~~v-i~~~~~~~~~~~~~i  135 (258)
                      +...+++++|++||-.|+|+ |.++..+|+..|. .+|++++.+++..+.+++    +|. +.+ +...+     .    
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d-----~----  164 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD-----I----  164 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC-----G----
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc-----c----
Confidence            45788999999999999985 8888899998753 289999999998887754    553 222 22222     1    


Q ss_pred             HHhcCC-CCCEEEEecCC-hhhHHHHHHhhhcCCceEEEec
Q 025101          136 IDMTDG-GADYCFECVGL-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       136 ~~~~~~-~~d~v~d~~g~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ...... .+|.||--.+. ...++.+.+.|+|+ |+++.+.
T Consensus       165 ~~~~~~~~~D~V~~d~p~p~~~l~~~~~~LKpG-G~lv~~~  204 (266)
T d1o54a_         165 SEGFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVC  204 (266)
T ss_dssp             GGCCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEE
T ss_pred             cccccccceeeeEecCCCHHHHHHHHHhhcCCC-CEEEEEe
Confidence            122233 68888754554 45689999999999 9998764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.95  E-value=3.5e-05  Score=58.90  Aligned_cols=78  Identities=24%  Similarity=0.308  Sum_probs=55.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhcCCceE---EcCCCCCCccHHH-HHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEF---VNSKNCGDKSVSQ-IIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~-~~~~g~~~v---i~~~~~~~~~~~~-~i~~~~~--~~  142 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+. ++++|....   .|-.+   ++-.+ .+.+...  ++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~---~~~v~~~~~~~~~~~g~   79 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTD---QASIDRCVAELLDRWGS   79 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC---HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCC---HHHHHHHHHHHHHHhCC
Confidence            5889999987 8999999999999999 99999999888764 456775432   23333   33333 2222221  37


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|+++++.|.
T Consensus        80 iDilVnnAg~   89 (256)
T d1k2wa_          80 IDILVNNAAL   89 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             ccEEEeeccc
Confidence            9999998885

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3e-05  Score=59.68  Aligned_cols=107  Identities=16%  Similarity=0.132  Sum_probs=66.4

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----cCCceEEcCCCCCCccHHHHHHHh-c--C
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVTEFVNSKNCGDKSVSQIIIDM-T--D  140 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-----~g~~~vi~~~~~~~~~~~~~i~~~-~--~  140 (258)
                      -+|+++||+|+ +++|+++++.+...|+ +|+.++|++++.+.+.+     .+........+.......+.+.+. .  .
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            36899999987 8999999999988999 99999999988776532     333221111111112322222221 1  2


Q ss_pred             CCCCEEEEecCChh-------------------------hHHHHHHhhh-cCCceEEEecccCC
Q 025101          141 GGADYCFECVGLAS-------------------------LVQEAYACCR-KGWGKTIVLGVDQP  178 (258)
Q Consensus       141 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l~-~~~G~~v~~g~~~~  178 (258)
                      +..|+++++.|...                         .....+..++ .+ |+++.++...+
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~-G~ii~isS~~~  153 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-GSIVVVSSLAG  153 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEGGG
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC-CcceEeccchh
Confidence            36899888766411                         2334444554 35 89888876544

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=2.8e-05  Score=58.96  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=55.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce--EEcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE--FVNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~--vi~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++++...  ..|-.+   ++..+.+.+.. +++|++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~-g~iDil   78 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD---WDATEKALGGI-GPVDLL   78 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTC-CCCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHc-CCCeEE
Confidence            6899999987 8999999999999999 999999998887655 4454222  234433   44444443333 379999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      +++.|.
T Consensus        79 VnnAg~   84 (242)
T d1cyda_          79 VNNAAL   84 (242)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            998874

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.93  E-value=4e-05  Score=58.61  Aligned_cols=78  Identities=19%  Similarity=0.259  Sum_probs=56.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce-E--EcCCCCCCccH----HHHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSV----SQIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~----~~~i~~~  138 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+    ++.+... .  .|-.+   ++-    .+.+.+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~---~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS---RTERDKLMQTVAHV   80 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC---HHHHHHHHHHHHHH
Confidence            6899999986 8999999999988999 999999998776543    3455433 2  23333   333    3344455


Q ss_pred             cCCCCCEEEEecCC
Q 025101          139 TDGGADYCFECVGL  152 (258)
Q Consensus       139 ~~~~~d~v~d~~g~  152 (258)
                      .++.+|+++++.|.
T Consensus        81 ~~g~idilinnag~   94 (258)
T d1ae1a_          81 FDGKLNILVNNAGV   94 (258)
T ss_dssp             TTSCCCEEEECCCC
T ss_pred             hCCCcEEEeccccc
Confidence            55579999998876

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.90  E-value=0.0001  Score=55.93  Aligned_cols=102  Identities=20%  Similarity=0.201  Sum_probs=67.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHhcCCceE---EcCCCCCCccHHH----HHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF--EIGKRFGVTEF---VNSKNCGDKSVSQ----IIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~--~~~~~~g~~~v---i~~~~~~~~~~~~----~i~~~~~  140 (258)
                      +|+.+||+|+ +++|.+.++.+...|+ +|+++++++++.  +.+++.|....   .|-.+   ++-.+    .+.+.. 
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~---~~~v~~~~~~~~~~~-   78 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ---PGDVEAFGKQVISTF-   78 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCC---HHHHHHHHHHHHHHc-
Confidence            5889999987 8999999999999999 999999876543  34566774322   23333   33332    233333 


Q ss_pred             CCCCEEEEecCChh-------------------------hHHHHHHhhh--cCCceEEEecccCC
Q 025101          141 GGADYCFECVGLAS-------------------------LVQEAYACCR--KGWGKTIVLGVDQP  178 (258)
Q Consensus       141 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~~G~~v~~g~~~~  178 (258)
                      |++|+++++.|...                         ..+..+..+.  .+ |+++.+++...
T Consensus        79 G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~Iv~isS~~~  142 (247)
T d2ew8a1          79 GRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGW-GRIINLTSTTY  142 (247)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGG
T ss_pred             CCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCC-CCccccccchh
Confidence            37999999887521                         2334555554  34 89998886543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.87  E-value=2.9e-05  Score=58.84  Aligned_cols=78  Identities=22%  Similarity=0.261  Sum_probs=55.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCce-EEcCCCCCCccHH---HHHHHhcCCCCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-FVNSKNCGDKSVS---QIIIDMTDGGAD  144 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~-vi~~~~~~~~~~~---~~i~~~~~~~~d  144 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. ++++.. ..|-.+  .+++.   +.+.+.. +.+|
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~-g~iD   79 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD--PASVERGFAEALAHL-GRLD   79 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC--HHHHHHHHHHHHHHH-SSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCC--HHHHHHHHHHHHHhc-CCce
Confidence            5899999987 8999999999999999 9999999998877654 456532 234333  12222   2333333 2699


Q ss_pred             EEEEecCC
Q 025101          145 YCFECVGL  152 (258)
Q Consensus       145 ~v~d~~g~  152 (258)
                      +++++.|.
T Consensus        80 ilVnnAG~   87 (242)
T d1ulsa_          80 GVVHYAGI   87 (242)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99998875

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.87  E-value=0.0002  Score=47.22  Aligned_cols=93  Identities=11%  Similarity=-0.035  Sum_probs=63.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~--~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      .|.+|||+|+|.+|..-++.+...|+ +|++++.....  .+++++-+.. .+...- +++++         .++++|+-
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i~-~~~~~~-~~~dl---------~~~~lv~~   78 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGMLT-LVEGPF-DETLL---------DSCWLAIA   78 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSCE-EEESSC-CGGGG---------TTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCce-eeccCC-CHHHh---------CCCcEEee
Confidence            58999999999999999999999999 88887654432  2233222232 222111 11221         16999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      +++....-.......++. |..+-+...
T Consensus        79 at~d~~~n~~i~~~a~~~-~ilVNv~D~  105 (113)
T d1pjqa1          79 ATDDDTVNQRVSDAAESR-RIFCNVVDA  105 (113)
T ss_dssp             CCSCHHHHHHHHHHHHHT-TCEEEETTC
T ss_pred             cCCCHHHHHHHHHHHHHc-CCEEEeCCC
Confidence            999988445777778887 888877644

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.86  E-value=6.7e-05  Score=57.09  Aligned_cols=77  Identities=16%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceE---EcCCCCCCccHH----HHHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSVS----QIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v---i~~~~~~~~~~~----~~i~~~  138 (258)
                      +|+.+||+|+ +++|.+.++.+...|+ +|+++++++++.+.+    ++.|....   .|-.+   ++-.    +.+.+.
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~---~~~v~~~~~~~~~~   84 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK---KEEISEVINKILTE   84 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC---HHHHHHHHHHHHHh
Confidence            5789999987 8999999998888999 999999998876544    34553322   23333   3322    233333


Q ss_pred             cCCCCCEEEEecCC
Q 025101          139 TDGGADYCFECVGL  152 (258)
Q Consensus       139 ~~~~~d~v~d~~g~  152 (258)
                      . |.+|+++++.|.
T Consensus        85 ~-g~iDilvnnag~   97 (251)
T d2c07a1          85 H-KNVDILVNNAGI   97 (251)
T ss_dssp             C-SCCCEEEECCCC
T ss_pred             c-CCceeeeecccc
Confidence            2 379999998875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.85  E-value=9.4e-05  Score=53.77  Aligned_cols=75  Identities=16%  Similarity=0.215  Sum_probs=54.6

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-c----CC-ceEEcCCCCCCccHHHHHHHhcCCC
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GV-TEFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~----g~-~~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      -+|++++|+|+ |++|..+++.+...|+ +|++++|++++.+.+.+ +    .. ....|..+      .+.+.+..+ +
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~-~   92 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD------DASRAEAVK-G   92 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS------HHHHHHHTT-T
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhccc------HHHHHHHhc-C
Confidence            47999999986 8999999999999999 99999999988765533 2    22 22344433      223444333 6


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|++|++.|.
T Consensus        93 iDilin~Ag~  102 (191)
T d1luaa1          93 AHFVFTAGAI  102 (191)
T ss_dssp             CSEEEECCCT
T ss_pred             cCeeeecCcc
Confidence            9999999874

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=5.2e-06  Score=62.87  Aligned_cols=100  Identities=15%  Similarity=0.198  Sum_probs=64.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCC---CCccHHHHHHHhcCC-CCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC---GDKSVSQIIIDMTDG-GADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~---~~~~~~~~i~~~~~~-~~d~  145 (258)
                      +|++|||+|+ +++|.++++.+...|+ +|+.+++++++...     ....+.....   ..+.+...+.+..+. ++|+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~   74 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEAS-----ASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   74 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTSS-----EEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----ccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence            4899999987 8999999999999999 99998876654211     1111111110   001223334444444 7999


Q ss_pred             EEEecCChh--------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          146 CFECVGLAS--------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       146 v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      ++++.|...                          ..+.++..++++ |+++.++...
T Consensus        75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-G~Iv~isS~~  131 (236)
T d1dhra_          75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAKA  131 (236)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGG
T ss_pred             EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc-cceeEEccHH
Confidence            999887310                          344566677888 9999998654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=8.8e-05  Score=56.60  Aligned_cols=78  Identities=24%  Similarity=0.366  Sum_probs=53.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCC-ceE----EcCCCCCCcc---HHHHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGV-TEF----VNSKNCGDKS---VSQIIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~-~~v----i~~~~~~~~~---~~~~i~~  137 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.+. ..+    .|-.+  +++   +.+.+.+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~--~~~v~~~v~~~~~   85 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN--EEDILSMFSAIRS   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            5899999987 8999999999988999 999999998886654    33332 122    23333  122   2333333


Q ss_pred             hcCCCCCEEEEecCC
Q 025101          138 MTDGGADYCFECVGL  152 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~  152 (258)
                      .. +++|+++++.|.
T Consensus        86 ~~-g~iD~lVnnAg~   99 (257)
T d1xg5a_          86 QH-SGVDICINNAGL   99 (257)
T ss_dssp             HH-CCCSEEEECCCC
T ss_pred             hc-CCCCEEEecccc
Confidence            33 379999998876

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=9.2e-05  Score=56.37  Aligned_cols=103  Identities=21%  Similarity=0.198  Sum_probs=65.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----C-Cce---EEcCCCCCCccHHHHHHHhcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----G-VTE---FVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g-~~~---vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. ++    + ...   ..|-.+  .+++.+.+.+...
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   78 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD--QQQLRDTFRKVVD   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC--HHHHHHHHHHHHH
Confidence            5899999987 8999999999999999 9999999988866542 22    2 121   123333  1222222322222


Q ss_pred             --CCCCEEEEecCChh-----------------hHHHHHHhhhc-----CCceEEEecccC
Q 025101          141 --GGADYCFECVGLAS-----------------LVQEAYACCRK-----GWGKTIVLGVDQ  177 (258)
Q Consensus       141 --~~~d~v~d~~g~~~-----------------~~~~~~~~l~~-----~~G~~v~~g~~~  177 (258)
                        |++|+++++.|...                 ....++..+.+     + |+++.+++..
T Consensus        79 ~~G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~-g~Iv~isS~~  138 (254)
T d2gdza1          79 HFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEG-GIIINMSSLA  138 (254)
T ss_dssp             HHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC-EEEEEECCGG
T ss_pred             HcCCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCC-cEEEeeccHh
Confidence              27999999988621                 22344444432     3 7898887654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.83  E-value=2.3e-05  Score=58.54  Aligned_cols=104  Identities=13%  Similarity=0.174  Sum_probs=71.2

Q ss_pred             hhhhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC--Cc--eEEcCCCCCCcc
Q 025101           55 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VT--EFVNSKNCGDKS  130 (258)
Q Consensus        55 ~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g--~~--~vi~~~~~~~~~  130 (258)
                      +...|.  +.+...+++|++||-+|+|. |..++.+++. +. +|++++.+++..+.+++.-  ..  .++..+      
T Consensus        56 p~~~a~--ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l-~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d------  124 (224)
T d1vbfa_          56 LNLGIF--MLDELDLHKGQKVLEIGTGI-GYYTALIAEI-VD-KVVSVEINEKMYNYASKLLSYYNNIKLILGD------  124 (224)
T ss_dssp             HHHHHH--HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESC------
T ss_pred             hhhHHH--HHHHhhhcccceEEEecCCC-CHHHHHHHHH-hc-ccccccccHHHHHHHHHHHhcccccccccCc------
Confidence            444444  34678899999999999984 8888878876 44 8999999998888876631  11  222211      


Q ss_pred             HHHHHHHhc-CCCCCEEEEecCChhhHHHHHHhhhcCCceEEEe
Q 025101          131 VSQIIIDMT-DGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       131 ~~~~i~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      ...   ... .+.||.|+-+.+-+...+..++.|+++ |+++..
T Consensus       125 ~~~---g~~~~~pfD~Iiv~~a~~~ip~~l~~qLk~G-GrLV~p  164 (224)
T d1vbfa_         125 GTL---GYEEEKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILP  164 (224)
T ss_dssp             GGG---CCGGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             hhh---cchhhhhHHHHHhhcchhhhhHHHHHhcCCC-CEEEEE
Confidence            110   111 126999987665555566788999999 998875

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.83  E-value=0.00013  Score=55.04  Aligned_cols=81  Identities=17%  Similarity=0.241  Sum_probs=55.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceEEcCCCCCCcc-HHHHHHHhcC--CCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKS-VSQIIIDMTD--GGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~-~~~~i~~~~~--~~~d~  145 (258)
                      +|+++||+|+ +++|.+.++-+...|+ +|+++.+++++.+.+ ++++....+-.-+++.++ +.+.+.+...  +++|+
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDi   82 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   82 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccE
Confidence            6899999987 8999999999999999 999999999887654 557754322112221133 3222333222  37999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      ++++.|.
T Consensus        83 LinnAg~   89 (241)
T d2a4ka1          83 VAHFAGV   89 (241)
T ss_dssp             EEEGGGG
T ss_pred             ecccccc
Confidence            9998775

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=3.8e-05  Score=54.84  Aligned_cols=79  Identities=10%  Similarity=0.080  Sum_probs=54.8

Q ss_pred             hhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cC---CceEEcCCCCCCccHHHHHHH
Q 025101           62 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG---VTEFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        62 ~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g---~~~vi~~~~~~~~~~~~~i~~  137 (258)
                      +|.+..-..+|++|||+|+|+.+.+++..+...|. +++++.|+.+|.+.+.+ +.   ....++..+            
T Consensus         8 ~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~------------   74 (170)
T d1nyta1           8 DLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMDE------------   74 (170)
T ss_dssp             HHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECCSGG------------
T ss_pred             HHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhccccccccccc------------
Confidence            34333334578999999999999999998888999 89999999988776543 32   212222111            


Q ss_pred             hcCCCCCEEEEecCCh
Q 025101          138 MTDGGADYCFECVGLA  153 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~~  153 (258)
                      .....+|++++|+...
T Consensus        75 ~~~~~~dliIN~Tp~G   90 (170)
T d1nyta1          75 LEGHEFDLIINATSSG   90 (170)
T ss_dssp             GTTCCCSEEEECCSCG
T ss_pred             ccccccceeecccccC
Confidence            1112799999998653

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.82  E-value=0.00018  Score=54.91  Aligned_cols=78  Identities=26%  Similarity=0.313  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----c--CCceE---EcCCCCCCccHHH-HHHHhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F--GVTEF---VNSKNCGDKSVSQ-IIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~--g~~~v---i~~~~~~~~~~~~-~i~~~~  139 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.+    .  +...+   .|-.+   ++-.+ .+.+..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~---~~~v~~~~~~~~   78 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD---EAQVEAYVTATT   78 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS---HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCC---HHHHHHHHHHHH
Confidence            5889999987 8999999999999999 99999999988665422    2  22211   24333   33322 222222


Q ss_pred             C--CCCCEEEEecCC
Q 025101          140 D--GGADYCFECVGL  152 (258)
Q Consensus       140 ~--~~~d~v~d~~g~  152 (258)
                      .  |++|+++++.|.
T Consensus        79 ~~~G~iDiLVnnAG~   93 (258)
T d1iy8a_          79 ERFGRIDGFFNNAGI   93 (258)
T ss_dssp             HHHSCCSEEEECCCC
T ss_pred             HHhCCCCEEEECCcc
Confidence            1  279999998873

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=2.5e-05  Score=58.46  Aligned_cols=109  Identities=19%  Similarity=0.223  Sum_probs=72.3

Q ss_pred             cchhhhhhhhhhhhhc--CCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCC-----c-
Q 025101           52 LSCGVSTGVGAAWRTA--NVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGV-----T-  118 (258)
Q Consensus        52 ~~~~~~ta~~~l~~~~--~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~-----~-  118 (258)
                      +..+...|..  .+..  .+++|++||.+|+|. |..++.+++..|. .+|++++.+++-.+.+++    .+.     . 
T Consensus        57 is~P~~~a~~--le~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~  133 (224)
T d1i1na_          57 ISAPHMHAYA--LELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR  133 (224)
T ss_dssp             ECCHHHHHHH--HHHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSS
T ss_pred             hhhhHHHHHH--HHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccc
Confidence            3334555543  3444  789999999999985 8888889987763 389999999987776643    222     1 


Q ss_pred             -eEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEe
Q 025101          119 -EFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       119 -~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                       .++.. +     ..   ...... .||.|+-+.......+..++.|+|+ |+++..
T Consensus       134 ~~~~~g-D-----~~---~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpG-G~LV~p  180 (224)
T d1i1na_         134 VQLVVG-D-----GR---MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILP  180 (224)
T ss_dssp             EEEEES-C-----GG---GCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             eEEEEe-e-----cc---cccchhhhhhhhhhhcchhhcCHHHHhhcCCC-cEEEEE
Confidence             11111 1     10   011112 7999997766656567889999999 999874

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.80  E-value=9.3e-05  Score=56.94  Aligned_cols=104  Identities=23%  Similarity=0.297  Sum_probs=68.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcc-hHH----HHHhcCCceEEcCCCCCC-ccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFE----IGKRFGVTEFVNSKNCGD-KSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~-~~~----~~~~~g~~~vi~~~~~~~-~~~~~~i~~~~~--~  141 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|++++++.+ ..+    .+++.|.+.....-+..+ +++.+.+.+...  +
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            5899999986 8999999999999999 8998877643 333    334566543322222222 333333333322  3


Q ss_pred             CCCEEEEecCChh-------------------------hHHHHHHhhhcCCceEEEeccc
Q 025101          142 GADYCFECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       142 ~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ++|+++.+.|...                         ..+..+..+... |+++.++..
T Consensus        96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-g~~i~i~s~  154 (272)
T d1g0oa_          96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI  154 (272)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred             CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc-ccccccccc
Confidence            7999999887521                         355667777877 888878654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.79  E-value=0.00012  Score=52.33  Aligned_cols=96  Identities=8%  Similarity=0.012  Sum_probs=63.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      +++|+|+|+|.+|..+++.+...|+ +|++++++.++.+.+.+ ++...+. ...   ........... ...|.++.+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~-~~~---~~~~~~~~~~i-~~~~~~i~~~   75 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPI-SLD---VNDDAALDAEV-AKHDLVISLI   75 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEE-ECC---TTCHHHHHHHH-TTSSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhcccccccc-ccc---ccchhhhHhhh-hccceeEeec
Confidence            6899999999999999999988899 89999999999887655 4432222 222   11111111111 1578888888


Q ss_pred             CChhhHHHHHHhhhcCCceEEEec
Q 025101          151 GLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ...........+...+ ..++...
T Consensus        76 ~~~~~~~~~~~~~~~~-~~~~~~~   98 (182)
T d1e5qa1          76 PYTFHATVIKSAIRQK-KHVVTTS   98 (182)
T ss_dssp             CGGGHHHHHHHHHHHT-CEEECSS
T ss_pred             cchhhhHHHHHHHhhc-cceeecc
Confidence            7666455555555655 5655443

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.79  E-value=3.2e-05  Score=59.82  Aligned_cols=77  Identities=19%  Similarity=0.195  Sum_probs=54.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCce---EEcCCCCCCccHH-HHHHHhcC--CC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE---FVNSKNCGDKSVS-QIIIDMTD--GG  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~-~~i~~~~~--~~  142 (258)
                      +|+++||+|+ +++|.++++.+...|+ +|+++++++++.+.+ +++|...   ..|..+   ++.. +.+.+...  +.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~---~~~~~~~~~~~~~~~g~   79 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRS---LEDQKQAASRCVARFGK   79 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC---HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEeccccc---HHHHHHHHHHHHHHhCC
Confidence            6899999987 8999999999999999 999999999887654 4566432   223333   3322 22222221  27


Q ss_pred             CCEEEEecC
Q 025101          143 ADYCFECVG  151 (258)
Q Consensus       143 ~d~v~d~~g  151 (258)
                      +|+++++.|
T Consensus        80 idilvnnAG   88 (276)
T d1bdba_          80 IDTLIPNAG   88 (276)
T ss_dssp             CCEEECCCC
T ss_pred             ccccccccc
Confidence            999999887

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.2e-05  Score=61.04  Aligned_cols=101  Identities=22%  Similarity=0.274  Sum_probs=71.0

Q ss_pred             hhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHH
Q 025101           61 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQ  133 (258)
Q Consensus        61 ~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~  133 (258)
                      ..+....++.+|++||=+|+|. |..+..+++..|+ +|++++.+++..+.+++    .|..   .++.. +     .  
T Consensus        23 ~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~-d-----~--   92 (245)
T d1nkva_          23 ATLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN-D-----A--   92 (245)
T ss_dssp             HHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-C-----C--
T ss_pred             HHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhh-H-----H--
Confidence            3456788999999999999874 6677788888898 99999999988776654    4532   22221 1     1  


Q ss_pred             HHHHhc-CCCCCEEEEec-----C-ChhhHHHHHHhhhcCCceEEEec
Q 025101          134 IIIDMT-DGGADYCFECV-----G-LASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       134 ~i~~~~-~~~~d~v~d~~-----g-~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                        .++. .+.||.|+-.-     . -...+..+.+.|+|+ |+++...
T Consensus        93 --~~~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG-G~l~i~~  137 (245)
T d1nkva_          93 --AGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  137 (245)
T ss_dssp             --TTCCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             --hhccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC-cEEEEEe
Confidence              1122 23799987532     1 244688899999999 9987653

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=7.2e-05  Score=57.09  Aligned_cols=103  Identities=17%  Similarity=0.236  Sum_probs=72.3

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----c-C--CceE-EcCCCCCCccHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----F-G--VTEF-VNSKNCGDKSVSQ  133 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~-g--~~~v-i~~~~~~~~~~~~  133 (258)
                      +...++++||++||-.|+|+ |.++..+|+..|. .+|+.++.+++..+.+++    + +  .+++ +...+     ..+
T Consensus        88 Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d-----~~~  161 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD-----LAD  161 (264)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC-----GGG
T ss_pred             HHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc-----ccc
Confidence            45678999999999999985 8899999998763 389999999998888764    2 1  2222 22222     111


Q ss_pred             HHHHhcCCCCCEEEEecCC-hhhHHHHHHhhhcCCceEEEec
Q 025101          134 IIIDMTDGGADYCFECVGL-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       134 ~i~~~~~~~~d~v~d~~g~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                        .....+.+|.||--... ...+..+.+.|+|+ |+++.+.
T Consensus       162 --~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpG-G~lv~~~  200 (264)
T d1i9ga_         162 --SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYV  200 (264)
T ss_dssp             --CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred             --ccccCCCcceEEEecCCHHHHHHHHHhccCCC-CEEEEEe
Confidence              01112379988744444 45688999999999 9998764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.79  E-value=5.4e-05  Score=54.97  Aligned_cols=100  Identities=16%  Similarity=0.174  Sum_probs=67.0

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCc-----------------eEEcCCC
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVT-----------------EFVNSKN  125 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~-----------------~vi~~~~  125 (258)
                      +....+.+|.+||..|||. |..+..+|+. |+ +|++++.|++..+.+++. +..                 .++..+-
T Consensus        13 ~~~l~~~~~~rvLd~GCG~-G~~a~~la~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHcCCCCCCEEEEecCcC-CHHHHHHHHc-CC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            3456788999999999984 7888888874 99 999999999999888762 110                 1111110


Q ss_pred             CCCccHHHHHHHhcCCCCCEEEEecCC--------hhhHHHHHHhhhcCCceEEEec
Q 025101          126 CGDKSVSQIIIDMTDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       126 ~~~~~~~~~i~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                         .++.....    ..+|.|++....        ...+..+.+.|+|+ |++++..
T Consensus        90 ---~~l~~~~~----~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg-G~l~l~~  138 (201)
T d1pjza_          90 ---FALTARDI----GHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLIT  138 (201)
T ss_dssp             ---SSSTHHHH----HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEEE
T ss_pred             ---cccccccc----cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC-cEEEEEE
Confidence               11111111    168999885432        23467888999999 9876554

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.79  E-value=0.00012  Score=55.90  Aligned_cols=106  Identities=20%  Similarity=0.273  Sum_probs=66.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc-chHHHH-----HhcCCceEEcCCCCCCccHH----HHHHHhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIG-----KRFGVTEFVNSKNCGDKSVS----QIIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~~~~-----~~~g~~~vi~~~~~~~~~~~----~~i~~~~  139 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++ ++.+.+     .+.|.....-.-+.++++-.    +.+.+..
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            6889999987 8999999998889999 999999874 333332     23454333222222223322    2333333


Q ss_pred             CCCCCEEEEecCChh-------------------------hHHHHHHhhhc-CCceEEEecccCC
Q 025101          140 DGGADYCFECVGLAS-------------------------LVQEAYACCRK-GWGKTIVLGVDQP  178 (258)
Q Consensus       140 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~~  178 (258)
                       |++|+++++.|...                         ..+.++..+.. ++|+++.+++...
T Consensus        82 -G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~  145 (260)
T d1x1ta1          82 -GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHG  145 (260)
T ss_dssp             -SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             -CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccc
Confidence             37999999887521                         34455666553 2289998876543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=0.00015  Score=52.27  Aligned_cols=97  Identities=14%  Similarity=0.123  Sum_probs=62.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcC----C-ceEEcCCCCCCccHHHHHHHhcC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFG----V-TEFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g----~-~~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      -++++|+|+|+|+.|.+++..+...|.++++++.|++++.+.+.    +++    . ..+.+..+     ......... 
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-   89 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD-----QQAFAEALA-   89 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-----HHHHHHHHH-
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc-----ccchhhhhc-
Confidence            36889999999999999998888899989999999887765432    222    1 12334433     222111111 


Q ss_pred             CCCCEEEEecCChh------hHHHHHHhhhcCCceEEEec
Q 025101          141 GGADYCFECVGLAS------LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~~~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g  174 (258)
                       .+|++++|++-..      .+..-...+.++ ..++.+-
T Consensus        90 -~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~-~~v~Di~  127 (182)
T d1vi2a1          90 -SADILTNGTKVGMKPLENESLVNDISLLHPG-LLVTECV  127 (182)
T ss_dssp             -TCSEEEECSSTTSTTSCSCCSCCCGGGSCTT-CEEEECC
T ss_pred             -ccceeccccCCccccccchhhhhHHHhhhcc-hhhHHhh
Confidence             6999999986321      011123456666 7777665

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.78  E-value=0.00038  Score=52.15  Aligned_cols=72  Identities=19%  Similarity=0.141  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++   +++.+...+ .|.++     ..+.+.+..+ .+|++++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~---l~~~~~~~~~~Dv~~-----~~~~~~~~~g-~iD~lVn   72 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVVCDLRK-----DLDLLFEKVK-EVDILVL   72 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEECCTTT-----CHHHHHHHSC-CCSEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHH---HHhcCCcEEEcchHH-----HHHHHHHHhC-CCcEEEe
Confidence            5899999986 8999999999999999 99999988754   445554322 23322     2344444443 7999999


Q ss_pred             ecCC
Q 025101          149 CVGL  152 (258)
Q Consensus       149 ~~g~  152 (258)
                      +.|.
T Consensus        73 nAG~   76 (234)
T d1o5ia_          73 NAGG   76 (234)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            8875

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.1e-05  Score=63.62  Aligned_cols=105  Identities=18%  Similarity=0.244  Sum_probs=69.1

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----cC-----------CceE-EcCCC
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR----FG-----------VTEF-VNSKN  125 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~----~g-----------~~~v-i~~~~  125 (258)
                      +...+++++|++||-.|+|+ |.++..+|+..|.. +|+.++.+++..+.+++    ++           .+++ +...+
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d  168 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  168 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence            34678899999999999975 88999999987643 89999999998887654    11           1111 11111


Q ss_pred             CCCccHHHHHHHhcCCCCCEEE-EecCChhhHHHHHHhhhcCCceEEEec
Q 025101          126 CGDKSVSQIIIDMTDGGADYCF-ECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       126 ~~~~~~~~~i~~~~~~~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                        ..+...   ....+.+|.|| |-......+..+.+.|+|+ |+++.+.
T Consensus       169 --i~~~~~---~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpG-G~lv~~~  212 (324)
T d2b25a1         169 --ISGATE---DIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYV  212 (324)
T ss_dssp             --TTCCC----------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEE
T ss_pred             --hhhccc---ccCCCCcceEeecCcCHHHHHHHHHHhccCC-CEEEEEe
Confidence              011111   11122688887 5433334689999999999 9998775

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.76  E-value=7.9e-05  Score=56.80  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccH----HHHHHHhc
Q 025101           71 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSV----SQIIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g--~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~----~~~i~~~~  139 (258)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|++.+++++..+.+++    .+....+..+- ++++-    .+.+.+..
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~v~~~~~~~~~~~   84 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADV-TQDEELDALFAGVKEAF   84 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCT-TCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCccccccccc-CCHHHHHHHHHHHHHhc
Confidence            6899999996 5  799999988888999 89988888765554432    33333332221 11322    22333333


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                       +++|+++++.|.
T Consensus        85 -g~iDilVnnag~   96 (256)
T d1ulua_          85 -GGLDYLVHAIAF   96 (256)
T ss_dssp             -SSEEEEEECCCC
T ss_pred             -CCceEEEecccc
Confidence             379999998764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3.6e-05  Score=58.43  Aligned_cols=77  Identities=19%  Similarity=0.343  Sum_probs=58.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCc-eEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.+. +.. .+.|...   ++..+...+..+ .+|.++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~-~id~lV   79 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEVE-RLDVLF   79 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHCS-CCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeeccc---cccccccccccc-cceeEE
Confidence            6899999986 8999999999999999 999999998887766553 332 2334333   555555555443 799999


Q ss_pred             EecCC
Q 025101          148 ECVGL  152 (258)
Q Consensus       148 d~~g~  152 (258)
                      ++.|.
T Consensus        80 n~ag~   84 (245)
T d2ag5a1          80 NVAGF   84 (245)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            98876

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=9.9e-05  Score=57.28  Aligned_cols=103  Identities=15%  Similarity=0.216  Sum_probs=71.0

Q ss_pred             hhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCceEEcCCCCCCccHHHHHHH
Q 025101           62 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        62 ~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~  137 (258)
                      -+.+.+++++|++||=+|+|- |..+..+++..|+ +|++++.|++..++++    +.|....+....   .+.     .
T Consensus        52 ~~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~---~d~-----~  121 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI---QGW-----E  121 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE---CCG-----G
T ss_pred             HHHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhh---hcc-----c
Confidence            355788999999999999973 5577889988899 9999999998866653    455332111111   111     1


Q ss_pred             hcCCCCCEEEE-----ecCC----------hhhHHHHHHhhhcCCceEEEecc
Q 025101          138 MTDGGADYCFE-----CVGL----------ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       138 ~~~~~~d~v~d-----~~g~----------~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ..++.||.|+.     .++.          +..++.+.+.|+|+ |++++-..
T Consensus       122 ~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg-G~~~l~~i  173 (291)
T d1kpia_         122 EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTI  173 (291)
T ss_dssp             GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT-CEEEEEEE
T ss_pred             ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC-CceEEEEE
Confidence            22347999874     3343          24588899999999 99886543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.73  E-value=0.0002  Score=54.30  Aligned_cols=94  Identities=21%  Similarity=0.363  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      .++|++||=+|+|. |..++.+++ .|+ +|++++.+++..+.+++    .|.. .++.      .+..+.   ...+.|
T Consensus       118 ~~~g~~VLDiGcGs-G~l~i~aa~-~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~------~d~~~~---~~~~~f  185 (254)
T d2nxca1         118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE------GSLEAA---LPFGPF  185 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE------SCHHHH---GGGCCE
T ss_pred             cCccCEEEEcccch-hHHHHHHHh-cCC-EEEEEECChHHHHHHHHHHHHcCCceeEEe------cccccc---cccccc
Confidence            57899999999874 777776655 688 89999999998887764    4543 2332      222221   222389


Q ss_pred             CEEEEecCCh---hhHHHHHHhhhcCCceEEEecc
Q 025101          144 DYCFECVGLA---SLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       144 d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      |+|+.+....   ..++.+.+.|+|+ |++++.|.
T Consensus       186 D~V~ani~~~~l~~l~~~~~~~LkpG-G~lilSgi  219 (254)
T d2nxca1         186 DLLVANLYAELHAALAPRYREALVPG-GRALLTGI  219 (254)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             chhhhccccccHHHHHHHHHHhcCCC-cEEEEEec
Confidence            9999765432   2356778899999 99987664

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=4.6e-05  Score=58.18  Aligned_cols=80  Identities=19%  Similarity=0.225  Sum_probs=54.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceEEcCCCCCCccHHH----HHHHhcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQ----IIIDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~----~i~~~~~~  141 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+    ++.|.....-.-+.++++-.+    .+.+.. +
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~-g   87 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-G   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            6899999987 8999999999999999 999999998876543    445543222122222233322    233333 3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|+++++.|.
T Consensus        88 ~iDilvnnAG~   98 (255)
T d1fmca_          88 KVDILVNNAGG   98 (255)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEeeeCCcC
Confidence            79999998875

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.71  E-value=0.0001  Score=56.99  Aligned_cols=99  Identities=13%  Similarity=0.101  Sum_probs=69.9

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-ceE-EcCCCCCCccHHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEF-VNSKNCGDKSVSQIII  136 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v-i~~~~~~~~~~~~~i~  136 (258)
                      +.+.+++++|++||-+|+|- |..++.+++..|+ +|++++.|++..+++++    .|. +.+ +...     ++    +
T Consensus        54 ~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~-----d~----~  122 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-----GW----E  122 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-----CG----G
T ss_pred             HHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHh-----hh----h
Confidence            45788999999999999974 7888899999999 99999999988877654    332 111 1111     11    1


Q ss_pred             HhcCCCCCEEEE-----ecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          137 DMTDGGADYCFE-----CVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       137 ~~~~~~~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      + .++.+|.|+.     .++.   ...+..+.+.|+|+ |++++-.
T Consensus       123 ~-~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg-G~~~l~~  166 (285)
T d1kpga_         123 Q-FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHT  166 (285)
T ss_dssp             G-CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             c-ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCC-CcEEEEE
Confidence            1 1247888764     3443   23477889999999 9987543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.71  E-value=8.4e-05  Score=56.71  Aligned_cols=80  Identities=16%  Similarity=0.177  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceEEcCCCCCCccHHH----HHHHhcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQ----IIIDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~----~i~~~~~~  141 (258)
                      .|+.+||+|+ +++|.+.++.+...|+ +|+++++++++.+.+    ++.|.....-.-+.++++-.+    .+.+.. +
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g   78 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY-G   78 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-C
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHh-C
Confidence            3678899987 8999999999988999 999999998876544    345543222122222233332    222322 3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|+++++.|.
T Consensus        79 ~iDilVnnAG~   89 (257)
T d2rhca1          79 PVDVLVNNAGR   89 (257)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            79999998875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.71  E-value=0.00011  Score=52.88  Aligned_cols=89  Identities=17%  Similarity=0.180  Sum_probs=59.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEc-------CCCCCCccHHHHHHHhcCCCCC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN-------SKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~-------~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      .+++.|+|+|.+|++++..+...|. .|.++++++++.+.+++.+......       ....-..+..+.++     .+|
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~aD   74 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK-----DAD   74 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT-----TCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc-----CCC
Confidence            3689999999999999999999999 9999999999998887765321111       00000012222222     699


Q ss_pred             EEEEecCChh---hHHHHHHhhhcC
Q 025101          145 YCFECVGLAS---LVQEAYACCRKG  166 (258)
Q Consensus       145 ~v~d~~g~~~---~~~~~~~~l~~~  166 (258)
                      ++|-++....   .+.+....+.++
T Consensus        75 ~iii~v~~~~~~~~~~~i~~~l~~~   99 (184)
T d1bg6a2          75 VILIVVPAIHHASIAANIASYISEG   99 (184)
T ss_dssp             EEEECSCGGGHHHHHHHHGGGCCTT
T ss_pred             EEEEEEchhHHHHHHHHhhhccCCC
Confidence            9999998765   233344444444

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.71  E-value=6.9e-05  Score=57.59  Aligned_cols=79  Identities=24%  Similarity=0.337  Sum_probs=53.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCC---ceEE--cCCCCCCccHHHHHHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV---TEFV--NSKNCGDKSVSQIIIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~---~~vi--~~~~~~~~~~~~~i~~~~~--~  141 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. +++.   ...+  |-.+  .+++...+.+...  +
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK--DEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC--HHHHHHHHHHHHHHcC
Confidence            6899999987 8999999999988999 9999999998876553 3432   1222  3333  1223222322221  3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      .+|+++++.|.
T Consensus        82 ~iD~lVnnAG~   92 (268)
T d2bgka1          82 KLDIMFGNVGV   92 (268)
T ss_dssp             CCCEEEECCCC
T ss_pred             Ccceecccccc
Confidence            79999998874

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.70  E-value=1.6e-05  Score=58.32  Aligned_cols=55  Identities=20%  Similarity=0.191  Sum_probs=40.1

Q ss_pred             cccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEc
Q 025101           22 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG   79 (258)
Q Consensus        22 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G   79 (258)
                      +.|+|+||+++|+..++++|+.++++.++....++.+...+   ...+++|++|+|+.
T Consensus       142 ~~G~fAEy~~v~~~~~~~~p~~~~~e~l~~~~~~~~~v~~g---~~~l~~G~~VaVi~  196 (198)
T d2jhfa1         142 GTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFEKINEG---FDLLRSGESIRTIL  196 (198)
T ss_dssp             TTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHH---HHHHHTTCCSEEEE
T ss_pred             CCCcccCeEEeCHHHeEECCCCCCHHHHHHHHHHHHhhhhC---CceeeCCCEEEEEE
Confidence            34899999999999999999999887766654444433222   23467899888763

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.69  E-value=9.7e-05  Score=56.42  Aligned_cols=105  Identities=21%  Similarity=0.307  Sum_probs=66.4

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC-CcchHHH----HHhcCCceEEcCCCCC-CccHHHHHHHhcC-
Q 025101           69 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVTEFVNSKNCG-DKSVSQIIIDMTD-  140 (258)
Q Consensus        69 ~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~-~~~~~~~----~~~~g~~~vi~~~~~~-~~~~~~~i~~~~~-  140 (258)
                      +-.|+++||+|+ +++|.+.++.+...|+ +|++..+ +++..+.    +++.|.+.+.-.-+++ .++..+.+..... 
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence            346899999986 8999999999999999 8887654 4444333    3456654322222211 1233333332222 


Q ss_pred             -CCCCEEEEecCChh-------------------------hHHHHHHhhhcCCceEEEecc
Q 025101          141 -GGADYCFECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       141 -~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~  175 (258)
                       +++|+++++.|...                         ..+..+..++.+ |.++.+..
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~~iii~s  141 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSS  141 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC-Cccccccc
Confidence             26999999888621                         455677777777 87777754

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=0.00027  Score=54.52  Aligned_cols=102  Identities=12%  Similarity=0.164  Sum_probs=69.2

Q ss_pred             hhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHH
Q 025101           62 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        62 ~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~  137 (258)
                      .+.+.+++++|++||-+|+|. |..+..+++..|+ +|++++.|++..+++++    .|....+....   .+.    ++
T Consensus        43 ~~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~---~d~----~~  113 (280)
T d2fk8a1          43 LNLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL---QGW----ED  113 (280)
T ss_dssp             HHHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCG----GG
T ss_pred             HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhh---hhh----hh
Confidence            355778899999999999874 4566778888899 99999999998877654    44321111111   111    11


Q ss_pred             hcCCCCCEEEE-----ecCCh---hhHHHHHHhhhcCCceEEEec
Q 025101          138 MTDGGADYCFE-----CVGLA---SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~~~d~v~d-----~~g~~---~~~~~~~~~l~~~~G~~v~~g  174 (258)
                       .++.+|.|+.     .++.+   ..+..+.+.|+|+ |++++-.
T Consensus       114 -~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg-G~~~i~~  156 (280)
T d2fk8a1         114 -FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQS  156 (280)
T ss_dssp             -CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             -hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC-ceEEEEE
Confidence             2347898864     33332   3478899999999 9987643

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.66  E-value=0.00028  Score=53.59  Aligned_cols=80  Identities=13%  Similarity=0.052  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-ceEEcCCCCC-Cc-cHH---HHHHHhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCG-DK-SVS---QIIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~-~~-~~~---~~i~~~~  139 (258)
                      +|+++||+|+ +++|.+++..+...|+ +|+++.++.++.+.+.+    .+. ...+..-+++ +. ++.   +.+.+..
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            5899999986 8999999888888899 78888777666554432    222 2112111211 12 232   3333333


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                       +++|+++++.|.
T Consensus        83 -g~iDilvnnAG~   94 (254)
T d1sbya1          83 -KTVDILINGAGI   94 (254)
T ss_dssp             -SCCCEEEECCCC
T ss_pred             -CCCCEEEeCCCC
Confidence             379999999986

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.66  E-value=0.00016  Score=51.11  Aligned_cols=86  Identities=19%  Similarity=0.227  Sum_probs=60.6

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC-ceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +|.|+|+|.+|...+..++..|. +|++.++++++.+.+++.|. +...+..+        .+     ...|+||-|+..
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~~--------~~-----~~~DiIilavp~   67 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLS--------LL-----QTAKIIFLCTPI   67 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGG--------GG-----TTCSEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeecc--------cc-----cccccccccCcH
Confidence            68899999999998888888999 99999999999999999884 33332211        11     168999998875


Q ss_pred             hh---hHHHHHHhhhcCCceEEEec
Q 025101          153 AS---LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       153 ~~---~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..   .+++....+.++ ..++.++
T Consensus        68 ~~~~~vl~~l~~~l~~~-~iv~~~~   91 (165)
T d2f1ka2          68 QLILPTLEKLIPHLSPT-AIVTDVA   91 (165)
T ss_dssp             HHHHHHHHHHGGGSCTT-CEEEECC
T ss_pred             hhhhhhhhhhhhhcccc-cceeecc
Confidence            43   234444444554 4554444

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.65  E-value=1.3e-05  Score=60.61  Aligned_cols=99  Identities=17%  Similarity=0.241  Sum_probs=62.4

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCC---CCccHHHHHHHhcC-CCCCEE
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC---GDKSVSQIIIDMTD-GGADYC  146 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~---~~~~~~~~i~~~~~-~~~d~v  146 (258)
                      +.+|||+|+ +++|.+.++.+...|+ +|+.+++++++...     ....+.....   ......+.+..... +.+|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQAD-----SNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTSS-----EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhccc-----ccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            457899987 8999999999999999 99999988754211     1111111110   00111223333323 379999


Q ss_pred             EEecCChh--------------------------hHHHHHHhhhcCCceEEEecccC
Q 025101          147 FECVGLAS--------------------------LVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       147 ~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      +++.|...                          ..+..+..++++ |+++.++...
T Consensus        76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~Iv~isS~~  131 (235)
T d1ooea_          76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAAA  131 (235)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGG
T ss_pred             EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc-eEEEEeccHH
Confidence            99887410                          244566677788 9999987544

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=0.00027  Score=55.08  Aligned_cols=104  Identities=19%  Similarity=0.264  Sum_probs=65.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcc---------hHHH-HH---hcCCceEEcCCCC-CCccHHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE---------KFEI-GK---RFGVTEFVNSKNC-GDKSVSQII  135 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~---------~~~~-~~---~~g~~~vi~~~~~-~~~~~~~~i  135 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|++.+++.+         +.+. .+   ..+.....|..+. ..+.+.+.+
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH
Confidence            5899999987 7999999999999999 8999876532         2222 22   2333344555441 011223333


Q ss_pred             HHhcCCCCCEEEEecCChh-------------------------hHHHHHHhhh--cCCceEEEecccC
Q 025101          136 IDMTDGGADYCFECVGLAS-------------------------LVQEAYACCR--KGWGKTIVLGVDQ  177 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~~G~~v~~g~~~  177 (258)
                      .+.. |++|+++++.|...                         ..+.++..++  .+ |++|.+++..
T Consensus        85 ~~~~-G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~IV~isS~~  151 (302)
T d1gz6a_          85 LDTF-GRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNY-GRIIMTASAS  151 (302)
T ss_dssp             HHHT-SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECCHH
T ss_pred             HHHc-CCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCC-cEEEEeCChh
Confidence            3333 37999999987521                         3445666664  34 8999988543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=8.1e-05  Score=57.39  Aligned_cols=102  Identities=18%  Similarity=0.280  Sum_probs=64.4

Q ss_pred             CCCEE-EEEcc-CHHHHHHHH-HHHHcCCCeEEEEcCCcchHHHH----HhcCCc-eE--EcCCCC-CCccHHHHHHHhc
Q 025101           71 VGSTV-VIFGL-GSIGLAVAE-GARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNC-GDKSVSQIIIDMT  139 (258)
Q Consensus        71 ~g~~v-lI~G~-g~~G~~a~~-l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~-~~~~~~~~i~~~~  139 (258)
                      .|++| ||+|+ +++|+++++ +++.-|+ +|+.++|++++.+.+    ++.|.. .+  .|-.+. +.+.+.+.+.+..
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            36777 67786 899998776 4555688 999999999887654    333432 22  233330 0112233444433


Q ss_pred             CCCCCEEEEecCChh-------------------------hHHHHHHhhhcCCceEEEecc
Q 025101          140 DGGADYCFECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       140 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~  175 (258)
                       +.+|+++++.|-..                         ..+.++..+++. |+++.++.
T Consensus        80 -g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-g~ivnisS  138 (275)
T d1wmaa1          80 -GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSS  138 (275)
T ss_dssp             -SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECC
T ss_pred             -CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccc
Confidence             27999999887520                         244556777888 99988875

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.63  E-value=0.00011  Score=57.12  Aligned_cols=78  Identities=12%  Similarity=0.144  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----HhcCCce-EE--cCCCCCCccHHHH-HHHhc-
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-----KRFGVTE-FV--NSKNCGDKSVSQI-IIDMT-  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-----~~~g~~~-vi--~~~~~~~~~~~~~-i~~~~-  139 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+     .+.|... .+  |..+   ++-.+. +.... 
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~---~~~v~~~~~~~~~   99 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD---PDMVQNTVSELIK   99 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccC---hHHHHHHhhhhhh
Confidence            5899999986 8999999999989999 999999998775432     2345332 22  3333   333322 22221 


Q ss_pred             -CCCCCEEEEecCC
Q 025101          140 -DGGADYCFECVGL  152 (258)
Q Consensus       140 -~~~~d~v~d~~g~  152 (258)
                       .+++|+++++.|.
T Consensus       100 ~~g~iDilvnnAg~  113 (294)
T d1w6ua_         100 VAGHPNIVINNAAG  113 (294)
T ss_dssp             HTCSCSEEEECCCC
T ss_pred             hccccchhhhhhhh
Confidence             2379999998875

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.61  E-value=7.6e-05  Score=56.18  Aligned_cols=93  Identities=18%  Similarity=0.177  Sum_probs=67.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      ..++.+||-+|+|. |..+..+++ .|+ +|++++.+++..+.+++.+....+....   +++     ....+.+|+|+.
T Consensus        40 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~---~~l-----~~~~~~fD~ii~  108 (246)
T d2avna1          40 LKNPCRVLDLGGGT-GKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKA---EDL-----PFPSGAFEAVLA  108 (246)
T ss_dssp             CCSCCEEEEETCTT-CHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCT---TSC-----CSCTTCEEEEEE
T ss_pred             cCCCCEEEEECCCC-chhcccccc-cce-EEEEeecccccccccccccccccccccc---ccc-----ccccccccceee
Confidence            45788999999984 888888876 588 8999999999999999877655554433   222     122347999885


Q ss_pred             ecC------C-hhhHHHHHHhhhcCCceEEEe
Q 025101          149 CVG------L-ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       149 ~~g------~-~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      ...      + ...+..+.+.|+|+ |.++..
T Consensus       109 ~~~~~~~~~d~~~~l~~i~r~Lk~g-G~~ii~  139 (246)
T d2avna1         109 LGDVLSYVENKDKAFSEIRRVLVPD-GLLIAT  139 (246)
T ss_dssp             CSSHHHHCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ecchhhhhhhHHHHHHHHHhhcCcC-cEEEEE
Confidence            432      2 23477888999999 988753

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.60  E-value=9.9e-05  Score=56.44  Aligned_cols=81  Identities=20%  Similarity=0.133  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcc-hHH----HHHhcCCceEEcCCCCCCccHHHH-HHHhcC--C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFE----IGKRFGVTEFVNSKNCGDKSVSQI-IIDMTD--G  141 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~-~~~----~~~~~g~~~vi~~~~~~~~~~~~~-i~~~~~--~  141 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|++++++.+ +.+    .+++.|.....-.-+.++++-.+. +.+...  +
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            6899999986 8999999988888999 9999998754 332    334566432221112122333322 222221  3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|+++++.|.
T Consensus        85 ~iDiLVnnAG~   95 (261)
T d1geea_          85 KLDVMINNAGL   95 (261)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEeecccee
Confidence            79999998875

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.59  E-value=8.2e-05  Score=56.87  Aligned_cols=77  Identities=22%  Similarity=0.240  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----HhcCCce---EEcCCCCCCccHHH----HHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-----KRFGVTE---FVNSKNCGDKSVSQ----IIID  137 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-----~~~g~~~---vi~~~~~~~~~~~~----~i~~  137 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+     ++.|...   ..|-.+   ++-.+    .+.+
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~---~~~v~~~~~~~~~   83 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN---TDIVTKTIQQIDA   83 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCC---HHHHHHHHHHHHH
Confidence            5889999987 8999999999999999 999999998776432     3356432   223333   33332    2323


Q ss_pred             hcCCCCCEEEEecCC
Q 025101          138 MTDGGADYCFECVGL  152 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~  152 (258)
                      .. +++|+++++.|.
T Consensus        84 ~~-g~iDilVnnAg~   97 (260)
T d1h5qa_          84 DL-GPISGLIANAGV   97 (260)
T ss_dssp             HS-CSEEEEEECCCC
T ss_pred             Hh-CCCcEecccccc
Confidence            22 379999998874

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.58  E-value=0.00027  Score=53.60  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=66.2

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC----CceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g----~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      +.||+|+ +++|++.+..+...|+ +|++.+++.++.+.+++.+    ...+.+..+  .+++.+.+.+..+ ++|++++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~--~~~~~~~~~~~~G-~iDiLVn   77 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE--PAELIEAVTSAYG-QVDVLVS   77 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS--HHHHHHHHHHHHS-CCCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHHH--HHHHHHHHHHHcC-CCCEEEE
Confidence            6789987 7999999988888999 9999999888877765532    223433322  2334444444443 7999998


Q ss_pred             ecCCh-h-------------------------hHHHHHHhhh--cCCceEEEecccCC
Q 025101          149 CVGLA-S-------------------------LVQEAYACCR--KGWGKTIVLGVDQP  178 (258)
Q Consensus       149 ~~g~~-~-------------------------~~~~~~~~l~--~~~G~~v~~g~~~~  178 (258)
                      +.|.. .                         ..+.++..+.  .+ |+++.++....
T Consensus        78 NAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~-G~IV~isS~~~  134 (252)
T d1zmta1          78 NDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKS-GHIIFITSATP  134 (252)
T ss_dssp             ECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCSTT
T ss_pred             CCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccccc-ceeeccccccc
Confidence            76531 0                         2334455554  35 89999886554

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.57  E-value=0.00012  Score=55.55  Aligned_cols=77  Identities=22%  Similarity=0.229  Sum_probs=54.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCC--c-eE--EcCCCCCCcc----HHHHHHHhc
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV--T-EF--VNSKNCGDKS----VSQIIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~--~-~v--i~~~~~~~~~----~~~~i~~~~  139 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. +++.  . ..  .|-.+   ++    +.+.+.+..
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD---EDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC---HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCC---HHHHHHHHHHHHHHh
Confidence            5899999986 8999999999999999 9999999988877654 3331  1 22  23333   33    233333333


Q ss_pred             CCCCCEEEEecCC
Q 025101          140 DGGADYCFECVGL  152 (258)
Q Consensus       140 ~~~~d~v~d~~g~  152 (258)
                       |++|+++++.|.
T Consensus        81 -G~iDiLVnnAg~   92 (251)
T d1zk4a1          81 -GPVSTLVNNAGI   92 (251)
T ss_dssp             -SSCCEEEECCCC
T ss_pred             -CCceEEEecccc
Confidence             379999998875

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.56  E-value=0.00075  Score=45.58  Aligned_cols=75  Identities=17%  Similarity=0.271  Sum_probs=55.1

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      .|+|.|.|.+|..+++.+...|. .|++++.++++.+.+++ ++.. ++.-+.    .-.+.+++..-..+|.++-++++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~-vi~Gd~----~~~~~l~~~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL-VINGDC----TKIKTLEDAGIEDADMYIAVTGK   75 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE-EEESCT----TSHHHHHHTTTTTCSEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhh-hccCcc----cchhhhhhcChhhhhhhcccCCc
Confidence            68999999999999999999999 99999999999887765 5654 443221    11223333322379999998888


Q ss_pred             hh
Q 025101          153 AS  154 (258)
Q Consensus       153 ~~  154 (258)
                      ..
T Consensus        76 d~   77 (132)
T d1lssa_          76 EE   77 (132)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.55  E-value=6.2e-05  Score=57.22  Aligned_cols=81  Identities=16%  Similarity=0.129  Sum_probs=54.8

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcC-Cc-eE--EcCCCC-CCccHHHHHHHhcCC-CC
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFG-VT-EF--VNSKNC-GDKSVSQIIIDMTDG-GA  143 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g-~~-~v--i~~~~~-~~~~~~~~i~~~~~~-~~  143 (258)
                      .++|||+|+ +++|.++++.+...|+. +|+.++|+.++.+.+++.. .. ++  .|..+. +.+++.+.+.+..+. ++
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            478999987 89999988887777853 7888999999988777643 22 22  233330 112233444444444 69


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |+++++.|.
T Consensus        83 dilinnAG~   91 (250)
T d1yo6a1          83 SLLINNAGV   91 (250)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEcCcc
Confidence            999998874

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.0002  Score=55.78  Aligned_cols=80  Identities=16%  Similarity=0.254  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc--------CCceE---EcCCCCCCccHHHHHH
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF--------GVTEF---VNSKNCGDKSVSQIII  136 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~--------g~~~v---i~~~~~~~~~~~~~i~  136 (258)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. ++        +...+   .|-.+  .+++.+.+.
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~   86 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN--EEEVNNLVK   86 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC--HHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC--HHHHHHHHH
Confidence            47899999987 8999999999988999 9999999988765432 22        22211   23333  122333233


Q ss_pred             HhcC--CCCCEEEEecCC
Q 025101          137 DMTD--GGADYCFECVGL  152 (258)
Q Consensus       137 ~~~~--~~~d~v~d~~g~  152 (258)
                      +...  +++|+++++.|.
T Consensus        87 ~~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          87 STLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHhCCeEEEEeeccc
Confidence            2221  279999998875

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.53  E-value=4.7e-05  Score=57.45  Aligned_cols=73  Identities=19%  Similarity=0.143  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCcc----HHHHHHHhcCCCCCE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS----VSQIIIDMTDGGADY  145 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~----~~~~i~~~~~~~~d~  145 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+..    ...|..+   ++    +.+.+.+.. +++|+
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~----~~~Dv~~---~~~v~~~~~~~~~~~-g~iDi   76 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLFG----VEVDVTD---SDAVDRAFTAVEEHQ-GPVEV   76 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSEE----EECCTTC---HHHHHHHHHHHHHHH-SSCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCceE----EEEecCC---HHHHHHHHHHHHHhc-CCceE
Confidence            6899999987 8999999999999999 99999998776543211    2233333   33    223333333 27999


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      ++++.|.
T Consensus        77 LVnnAG~   83 (237)
T d1uzma1          77 LVSNAGL   83 (237)
T ss_dssp             EEEECSC
T ss_pred             EEeeecc
Confidence            9998875

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.50  E-value=3.6e-05  Score=57.43  Aligned_cols=111  Identities=18%  Similarity=0.180  Sum_probs=67.9

Q ss_pred             cchhhhhhhhhhhhhc--CCCCCCEEEEEccCHHHHHHHHHHHHc---CC---CeEEEEcCCcchHHHHHh---------
Q 025101           52 LSCGVSTGVGAAWRTA--NVEVGSTVVIFGLGSIGLAVAEGARLC---GA---TRIIGVDVISEKFEIGKR---------  114 (258)
Q Consensus        52 ~~~~~~ta~~~l~~~~--~~~~g~~vlI~G~g~~G~~a~~l~~~~---g~---~~v~~~~~~~~~~~~~~~---------  114 (258)
                      +..+...|..  .+..  .+++|++||.+|+|. |..++.+++..   |.   .+|+.++.+++-.+.+++         
T Consensus        61 is~P~~~a~~--l~~L~~~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~  137 (223)
T d1r18a_          61 ISAPHMHAFA--LEYLRDHLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM  137 (223)
T ss_dssp             ECCHHHHHHH--HHHTTTTCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             eehhhhHHHH--HHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh
Confidence            3334555542  2333  789999999999863 66666666554   32   279999998877666543         


Q ss_pred             cCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEe
Q 025101          115 FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       115 ~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      .+..++.....    +..   ..+... .||.|+-+.+-+..-+..++.|+++ |+++..
T Consensus       138 ~~~~nv~~~~~----d~~---~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~g-G~lV~p  189 (223)
T d1r18a_         138 LDSGQLLIVEG----DGR---KGYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVP  189 (223)
T ss_dssp             HHHTSEEEEES----CGG---GCCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             cCccEEEEEec----ccc---cccccccceeeEEEEeechhchHHHHHhcCCC-cEEEEE
Confidence            12222211111    111   111122 7999987766655457888999999 999763

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.48  E-value=0.00012  Score=52.82  Aligned_cols=99  Identities=16%  Similarity=0.141  Sum_probs=66.6

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-ce--EEcCCCCCCccHHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TE--FVNSKNCGDKSVSQIII  136 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~--vi~~~~~~~~~~~~~i~  136 (258)
                      ....++++|++||=+|+|. |..++.+++. +. +|++++.+++..+.+++    +|. ++  ++.      .+..+...
T Consensus        26 l~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~------gda~~~~~   96 (186)
T d1l3ia_          26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME------GDAPEALC   96 (186)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE------SCHHHHHT
T ss_pred             HHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEE------Cchhhccc
Confidence            3456889999999999864 6666777764 44 89999999988877754    564 22  222      23333221


Q ss_pred             HhcCCCCCEEEEecCC---hhhHHHHHHhhhcCCceEEEec
Q 025101          137 DMTDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .  .+.+|.|+-..+.   ...++.+.+.|+|+ |+++...
T Consensus        97 ~--~~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  134 (186)
T d1l3ia_          97 K--IPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA  134 (186)
T ss_dssp             T--SCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             c--cCCcCEEEEeCccccchHHHHHHHHHhCcC-CEEEEEe
Confidence            1  1279999854432   34477888899999 9987653

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=1.7e-05  Score=57.19  Aligned_cols=43  Identities=9%  Similarity=0.067  Sum_probs=29.5

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCC
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANV   69 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~   69 (258)
                      +|+|+||+++|++.++++|+....  ++.. .++.++++++ ..+.+
T Consensus       124 ~GgfaEy~~v~~~~~~~ip~~~~~--~~~a-~~l~~a~~a~-~~a~v  166 (179)
T d1uufa1         124 LGGYSQQIVVHERYVLRIRVADIE--MIRA-DQINEAYERM-LRGDV  166 (179)
T ss_dssp             CCSSBSEEEEEGGGCEECCCCCEE--EECG-GGHHHHHHHH-HTTCS
T ss_pred             ccccceEEEechHHEEECCCCCcC--hhHh-chhHHHHHHH-HHhCc
Confidence            388999999999999999965432  2222 2566778775 34444

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00012  Score=53.78  Aligned_cols=97  Identities=15%  Similarity=0.110  Sum_probs=61.7

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .++|+|+|+ |.+|..++..+...|+ +|.+++|++++.......++. ++.-+-   .+. +.+.+... +.|+||.++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~-~~~gD~---~d~-~~l~~al~-~~d~vi~~~   75 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAH-VVVGDV---LQA-ADVDKTVA-GQDAVIVLL   75 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSE-EEESCT---TSH-HHHHHHHT-TCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcccccccccc-cccccc---cch-hhHHHHhc-CCCEEEEEe
Confidence            468999997 9999999988888898 999999999886544444443 332221   122 22333222 689999998


Q ss_pred             CChh----------hHHHHHHhhhcC-CceEEEecc
Q 025101          151 GLAS----------LVQEAYACCRKG-WGKTIVLGV  175 (258)
Q Consensus       151 g~~~----------~~~~~~~~l~~~-~G~~v~~g~  175 (258)
                      |...          .....++.++.. -.+++.++.
T Consensus        76 g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          76 GTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             CCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             ccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence            7531          123445555543 136777754

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.47  E-value=0.00022  Score=53.35  Aligned_cols=100  Identities=21%  Similarity=0.269  Sum_probs=68.7

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc--eEEcCCCCCCccHHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~  136 (258)
                      +.+.+.+++|++||-+|+|. |..+..+++. +. +|++++.|++..+.+++    .+..  .++..+.   +++     
T Consensus         8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~---~~~-----   76 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESL-----   76 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBC-----
T ss_pred             HHHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CC-eEEEEeCChhhhhhhhhhhccccccccccccccc---ccc-----
Confidence            45788999999999999975 7888888874 66 99999999987776643    3332  2221111   111     


Q ss_pred             HhcCCCCCEEEEecCC------hhhHHHHHHhhhcCCceEEEec
Q 025101          137 DMTDGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ....+.||+|+.+-.-      ...+..+.+.|+|+ |+++..-
T Consensus        77 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~~~~~~  119 (234)
T d1xxla_          77 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD-GRFLLVD  119 (234)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cccccccceeeeeceeecccCHHHHHHHHHHeeCCC-cEEEEEE
Confidence            1112379999864332      34588999999999 9988754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.45  E-value=0.00017  Score=55.50  Aligned_cols=77  Identities=22%  Similarity=0.223  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC--ce----EEcCCCCCCccHH----HHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--TE----FVNSKNCGDKSVS----QII  135 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~--~~----vi~~~~~~~~~~~----~~i  135 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.    +.+.  ..    ..|-.+   ++-.    +.+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~---~~~v~~~~~~~   79 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT---EDGQDQIINST   79 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS---HHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC---HHHHHHHHHHH
Confidence            5889999987 8999999999999999 9999999998876543    3332  11    223333   3322    233


Q ss_pred             HHhcCCCCCEEEEecCC
Q 025101          136 IDMTDGGADYCFECVGL  152 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g~  152 (258)
                      .+.. +++|+++++.|.
T Consensus        80 ~~~~-g~iDilvnnAG~   95 (272)
T d1xkqa_          80 LKQF-GKIDVLVNNAGA   95 (272)
T ss_dssp             HHHH-SCCCEEEECCCC
T ss_pred             HHHh-CCceEEEeCCcc
Confidence            3322 379999998764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.44  E-value=0.00011  Score=56.85  Aligned_cols=103  Identities=14%  Similarity=0.073  Sum_probs=70.2

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  135 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i  135 (258)
                      |.....+.+|.+||=+|+|. |..+..+++..|+ +|++++.++...+.+++    .|..   .++..+-   .++    
T Consensus        59 l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~---~~l----  129 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEI----  129 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSC----
T ss_pred             HHHhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccc---ccc----
Confidence            34556789999999999974 7788888887898 99999999988776654    3432   2322211   111    


Q ss_pred             HHhcCCCCCEEEEecC-----C-hhhHHHHHHhhhcCCceEEEeccc
Q 025101          136 IDMTDGGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                       ....+.||+|+-.-.     + ...+..+.+.|+|+ |++++....
T Consensus       130 -~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg-G~l~~~~~~  174 (282)
T d2o57a1         130 -PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDPM  174 (282)
T ss_dssp             -SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEEE
T ss_pred             -cccccccchhhccchhhhccCHHHHHHHHHHhcCCC-cEEEEEEee
Confidence             111237999985322     1 23588999999999 998876543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.44  E-value=0.00019  Score=55.20  Aligned_cols=77  Identities=22%  Similarity=0.243  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC--ce----EEcCCCCCCccHH----HHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--TE----FVNSKNCGDKSVS----QII  135 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~--~~----vi~~~~~~~~~~~----~~i  135 (258)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.    +.|.  ..    ..|-.+   ++-.    +.+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~   78 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE---ASGQDDIINTT   78 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS---HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC---HHHHHHHHHHH
Confidence            5899999987 8999999999999999 9999999988776543    3332  11    223333   3322    233


Q ss_pred             HHhcCCCCCEEEEecCC
Q 025101          136 IDMTDGGADYCFECVGL  152 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g~  152 (258)
                      .+.. |.+|+++++.|.
T Consensus        79 ~~~~-G~iDilVnnAG~   94 (274)
T d1xhla_          79 LAKF-GKIDILVNNAGA   94 (274)
T ss_dssp             HHHH-SCCCEEEECCCC
T ss_pred             HHHc-CCceEEEeeccc
Confidence            3333 379999998774

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.43  E-value=0.00056  Score=51.91  Aligned_cols=85  Identities=16%  Similarity=0.171  Sum_probs=53.4

Q ss_pred             CCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch----H---HHHHhcCCceEEcCCCCCCccHHHHHHH-h
Q 025101           68 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK----F---EIGKRFGVTEFVNSKNCGDKSVSQIIID-M  138 (258)
Q Consensus        68 ~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~----~---~~~~~~g~~~vi~~~~~~~~~~~~~i~~-~  138 (258)
                      ..+|+.++||+|+ |++|+++++.+...|+++|+.+.|++.+    .   +.+++.|....+-.-+.++.+-.+.+.+ +
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i   84 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI   84 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccc
Confidence            4678899999986 8999999888888898567777776432    1   2234466543222222222444444433 3


Q ss_pred             cCC-CCCEEEEecCC
Q 025101          139 TDG-GADYCFECVGL  152 (258)
Q Consensus       139 ~~~-~~d~v~d~~g~  152 (258)
                      ... .+|.++.+.|.
T Consensus        85 ~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          85 GDDVPLSAVFHAAAT   99 (259)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             ccccccccccccccc
Confidence            333 78999988875

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00024  Score=45.03  Aligned_cols=82  Identities=22%  Similarity=0.256  Sum_probs=51.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~--~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      +|++|+|+|.|.+|+++++++...|+ +|++.+..+.  ..+.+++ +....+...+   +.   .+.     ++|.|+-
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~---~~---~~~-----~~d~vi~   70 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTPPGLDKLPE-AVERHTGSLN---DE---WLM-----AADLIVA   70 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSSCTTGGGSCT-TSCEEESBCC---HH---HHH-----HCSEEEE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcCchhHHHHhh-ccceeecccc---hh---hhc-----cCCEEEE
Confidence            57899999999999999999999999 8999987553  2222222 2222333222   11   121     5889988


Q ss_pred             ecCChhhHHHHHHhhhcC
Q 025101          149 CVGLASLVQEAYACCRKG  166 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~  166 (258)
                      +.|-+. -+..+...+..
T Consensus        71 SPGi~~-~~~~~~~a~~~   87 (93)
T d2jfga1          71 SPGIAL-AHPSLSAAADA   87 (93)
T ss_dssp             CTTSCT-TSHHHHHHHHT
T ss_pred             CCCCCC-CCHHHHHHHHc
Confidence            887655 23344444433

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.42  E-value=7.3e-06  Score=60.22  Aligned_cols=54  Identities=24%  Similarity=0.332  Sum_probs=39.4

Q ss_pred             ccceeeeEEEecceEEEcCCCCCccchhhcchhhhhhhhhhhhhcCCCCCCEEEEEccCHHHHH
Q 025101           23 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA   86 (258)
Q Consensus        23 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~   86 (258)
                      .|+|+||+.+++..++++|++++.+.++...+.+          ..+.+++.|||+|+|++|++
T Consensus       143 ~g~faey~~v~~~~~~kip~~~~~~~~~~~~~~~----------~~v~~~~~vlv~G~G~iGl~  196 (198)
T d1p0fa1         143 TSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL----------DQINKAFELLSSGQGVRSIM  196 (198)
T ss_dssp             TCCSBSEEEEETTSEEEECTTSCGGGGEEEEECG----------GGHHHHHHHTTTSSCSEEEE
T ss_pred             CccceeeEEecHHHEEECCCCCCHHHHHHhhcch----------hhcCCCCEEEEECCCcceEE
Confidence            3789999999999999999999877655443322          22334556888888887753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.42  E-value=0.00097  Score=47.09  Aligned_cols=90  Identities=20%  Similarity=0.287  Sum_probs=63.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCC-ceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      +|+|+|+|.+|...+..++..|.. +|++++++++..+.+++.+. +......+           .......|+|+-|+.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA-----------KVEDFSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGG-----------GGGGTCCSEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhh-----------hhhccccccccccCC
Confidence            699999999999999888888853 79999999999999999885 33332221           111116899998888


Q ss_pred             Chh---hHHHHHHhhhcCCceEEEecc
Q 025101          152 LAS---LVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       152 ~~~---~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ...   .+....+.+.++ ..++.++.
T Consensus        72 ~~~~~~vl~~l~~~~~~~-~ii~d~~s   97 (171)
T d2g5ca2          72 VRTFREIAKKLSYILSED-ATVTDQGS   97 (171)
T ss_dssp             HHHHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred             chhhhhhhhhhhcccccc-cccccccc
Confidence            544   244455566666 66666664

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=6.2e-05  Score=56.41  Aligned_cols=97  Identities=13%  Similarity=0.150  Sum_probs=65.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc---eEEcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT---EFVNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~---~vi~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      .+|++||-+|+|. |..+..+++..+. +|++++.+++..+.+++....   .+.. ..   .+..........+.||.+
T Consensus        52 ~~g~~VLdIGcG~-G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~fD~i  125 (229)
T d1zx0a1          52 SKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIP-LK---GLWEDVAPTLPDGHFDGI  125 (229)
T ss_dssp             TTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEE-EE---SCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEeeccc-hHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhccccccc-cc---ccccccccccccccccce
Confidence            6789999999974 7788888886655 899999999988888764311   1111 11   223333333444479888


Q ss_pred             E-EecCCh----------hhHHHHHHhhhcCCceEEEe
Q 025101          147 F-ECVGLA----------SLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       147 ~-d~~g~~----------~~~~~~~~~l~~~~G~~v~~  173 (258)
                      + |+....          ..+..+.+.|+|| |+++..
T Consensus       126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG-G~~~~~  162 (229)
T d1zx0a1         126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYC  162 (229)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEEC
T ss_pred             eecccccccccccccCHHHHHHHHHHHcCCC-cEEEEE
Confidence            5 755431          2456788999999 998754

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.41  E-value=0.00062  Score=51.27  Aligned_cols=98  Identities=19%  Similarity=0.223  Sum_probs=61.8

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEc-CCcchHHHH----HhcCCce-EE--cCCCCCCccHH----HHHHHhcC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG----KRFGVTE-FV--NSKNCGDKSVS----QIIIDMTD  140 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~-~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~----~~i~~~~~  140 (258)
                      .+||+|+ +++|++.++.+...|+ +|++.+ +++++.+.+    ++.|... .+  |-.+   ++-.    +.+.+.. 
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~---~~~v~~~~~~~~~~~-   77 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK---EADVEAMMKTAIDAW-   77 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS---HHHHHHHHHHHHHHS-
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHHHHHHc-
Confidence            5788886 8999999999999999 888764 455554433    3455432 22  3333   3332    2333333 


Q ss_pred             CCCCEEEEecCChh-------------------------hHHHHHHhh--hcCCceEEEecccC
Q 025101          141 GGADYCFECVGLAS-------------------------LVQEAYACC--RKGWGKTIVLGVDQ  177 (258)
Q Consensus       141 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l--~~~~G~~v~~g~~~  177 (258)
                      +++|+++++.|...                         ..+.++..+  +.+ |+++.+++..
T Consensus        78 g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~~  140 (244)
T d1edoa_          78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIASVV  140 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTH
T ss_pred             CCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCC-cEEEEEcChh
Confidence            37999999887521                         344556665  345 9999988543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.40  E-value=0.0013  Score=46.02  Aligned_cols=88  Identities=17%  Similarity=0.142  Sum_probs=63.0

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCCh
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      +|-|+|.|.+|...++-+...|+ +|++.++++++.+.+++.++. +.       .+..+.++     ..|+||-|+.++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~-~~-------~~~~e~~~-----~~d~ii~~v~~~   67 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAE-TA-------STAKAIAE-----QCDVIITMLPNS   67 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC-------SSHHHHHH-----HCSEEEECCSSH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhh-hc-------ccHHHHHh-----CCCeEEEEcCCH
Confidence            58899999999998887777899 999999999999998888863 22       22333332     488999999876


Q ss_pred             hhHHHHH-------HhhhcCCceEEEeccc
Q 025101          154 SLVQEAY-------ACCRKGWGKTIVLGVD  176 (258)
Q Consensus       154 ~~~~~~~-------~~l~~~~G~~v~~g~~  176 (258)
                      ..+...+       ..+.++ ..++.+++.
T Consensus        68 ~~v~~v~~~~~~~~~~~~~g-~iiid~sT~   96 (161)
T d1vpda2          68 PHVKEVALGENGIIEGAKPG-TVLIDMSSI   96 (161)
T ss_dssp             HHHHHHHHSTTCHHHHCCTT-CEEEECSCC
T ss_pred             HHHHHHHhCCcchhhccCCC-CEEEECCCC
Confidence            6555443       334455 566666543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.40  E-value=0.00036  Score=52.97  Aligned_cols=74  Identities=18%  Similarity=0.147  Sum_probs=50.4

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceE---EcCCCCCCccHHH----HHHHhcCC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSVSQ----IIIDMTDG  141 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v---i~~~~~~~~~~~~----~i~~~~~~  141 (258)
                      .+||+|+ +++|.+.++.+...|+ +|+++++++++.+.+    ++.|....   .|-.+   ++-.+    .+.+.. |
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~---~~~v~~~~~~~~~~~-g   77 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD---RDQVFAAVEQARKTL-G   77 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS---HHHHHHHHHHHHHHT-T
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC---HHHHHHHHHHHHHHh-C
Confidence            4689987 8999999888888899 999999999887654    34554322   23333   33222    333322 3


Q ss_pred             CCCEEEEecCC
Q 025101          142 GADYCFECVGL  152 (258)
Q Consensus       142 ~~d~v~d~~g~  152 (258)
                      ++|+++++.|.
T Consensus        78 ~iDilVnnAG~   88 (255)
T d1gega_          78 GFDVIVNNAGV   88 (255)
T ss_dssp             CCCEEEECCCC
T ss_pred             CccEEEecccc
Confidence            79999998875

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.39  E-value=0.00032  Score=52.15  Aligned_cols=100  Identities=19%  Similarity=0.297  Sum_probs=68.6

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCce--EEcCCCCCCccHHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIII  136 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~  136 (258)
                      +.+.++++++++||-+|+| .|..+..+++. |+ +|++++.+++..+.+++    .+..+  ++..+.   .++     
T Consensus         7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~---~~l-----   75 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQM-----   75 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CC-----
T ss_pred             HHHhcCCCCcCEEEEeccc-CcHHHHHHHHh-CC-EEEEEECCHHHHhhhhhccccccccccccccccc---ccc-----
Confidence            4577899999999999997 47777777754 77 89999999987777653    44332  222221   111     


Q ss_pred             HhcCCCCCEEEEecC-----C-hhhHHHHHHhhhcCCceEEEec
Q 025101          137 DMTDGGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ....+.||+|+-.-.     . ...+..+.+.|+|+ |+++...
T Consensus        76 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~i~~  118 (231)
T d1vl5a_          76 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVD  118 (231)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cccccccccccccccccccCCHHHHHHHHHHhcCCC-cEEEEEe
Confidence            112237999985432     2 23588999999999 9998764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.37  E-value=0.0003  Score=53.77  Aligned_cols=78  Identities=21%  Similarity=0.216  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC--ce----EEcCCCCCCccHHH-HHHHh
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--TE----FVNSKNCGDKSVSQ-IIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~--~~----vi~~~~~~~~~~~~-~i~~~  138 (258)
                      +|+.+||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.    +.|.  ..    ..|-.+   ++-.+ .+.+.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~---~~~v~~~~~~~   79 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT---DAGQDEILSTT   79 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS---HHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC---HHHHHHHHHHH
Confidence            6889999987 8999999999988999 9999999988876543    3331  11    223333   33332 22222


Q ss_pred             cC--CCCCEEEEecCC
Q 025101          139 TD--GGADYCFECVGL  152 (258)
Q Consensus       139 ~~--~~~d~v~d~~g~  152 (258)
                      ..  +++|+++++.|.
T Consensus        80 ~~~~g~iDilvnnAG~   95 (264)
T d1spxa_          80 LGKFGKLDILVNNAGA   95 (264)
T ss_dssp             HHHHSCCCEEEECCC-
T ss_pred             HHHhCCCCEeeccccc
Confidence            21  379999998874

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.33  E-value=0.00098  Score=50.01  Aligned_cols=100  Identities=16%  Similarity=0.163  Sum_probs=63.7

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCC------eEEEEcCCcchHHHHH----hcCCce-E--EcCCCCCCccHH----HHH
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGAT------RIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVS----QII  135 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~------~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~~----~~i  135 (258)
                      .|||+|+ +++|.+.++.+...|++      .|+..++++++.+.+.    +.|... .  .|-.+   ++-.    +.+
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~---~~~v~~~~~~~   79 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD---MADVRRLTTHI   79 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS---HHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC---HHHHHHHHHHH
Confidence            4688887 79999998888888882      2888899988766543    345332 2  23333   3322    233


Q ss_pred             HHhcCCCCCEEEEecCChh-------------------------hHHHHHHhhh--cCCceEEEecccCC
Q 025101          136 IDMTDGGADYCFECVGLAS-------------------------LVQEAYACCR--KGWGKTIVLGVDQP  178 (258)
Q Consensus       136 ~~~~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~~G~~v~~g~~~~  178 (258)
                      .+.. |.+|+++++.|...                         ..+.++..++  .+ |+++.+++...
T Consensus        80 ~~~~-g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Ii~isS~~~  147 (240)
T d2bd0a1          80 VERY-GHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS-GHIFFITSVAA  147 (240)
T ss_dssp             HHHT-SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGG
T ss_pred             HHHc-CCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCC-CceEEEechhh
Confidence            3333 27999999887521                         3445666664  35 89998876543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.32  E-value=0.0004  Score=49.32  Aligned_cols=98  Identities=12%  Similarity=0.016  Sum_probs=60.3

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cC---CceEEcCCCCCCccHHHHHHHh
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG---VTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g---~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      |.+.....++++|+|+|+|+.+.+++..+...+. +++++.|+.++.+.+.+ ++   ....+...+            .
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~-~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~------------~   75 (171)
T d1p77a1           9 LQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTKELAERFQPYGNIQAVSMDS------------I   75 (171)
T ss_dssp             HHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG------------C
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCc-eeeeccchHHHHHHHHHHHhhccccchhhhcc------------c
Confidence            3333334578999999999999998888777554 99999999988765533 33   112222111            1


Q ss_pred             cCCCCCEEEEecCChhh---HHHHHHhhhcCCceEEEec
Q 025101          139 TDGGADYCFECVGLASL---VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ~~~~~d~v~d~~g~~~~---~~~~~~~l~~~~G~~v~~g  174 (258)
                      ....+|++++|++....   .......+.++ ..++.+-
T Consensus        76 ~~~~~diiIN~tp~g~~~~~~~~~~~~~~~~-~~~~D~v  113 (171)
T d1p77a1          76 PLQTYDLVINATSAGLSGGTASVDAEILKLG-SAFYDMQ  113 (171)
T ss_dssp             CCSCCSEEEECCCC-------CCCHHHHHHC-SCEEESC
T ss_pred             cccccceeeecccccccccccchhhhhhccc-ceeeeee
Confidence            11279999999875321   11123345566 6666554

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.31  E-value=0.00039  Score=47.14  Aligned_cols=75  Identities=16%  Similarity=0.312  Sum_probs=55.7

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEE-cCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      ++++|.|.|.+|..+++.+...|. .|++++.++++.+.+++.|...++ |..+   ++..+..   .-..+|.++-+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~gd~~~---~~~l~~a---~i~~a~~vi~~~~   73 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANATE---ENELLSL---GIRNFEYVIVAIG   73 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEECCTTC---TTHHHHH---TGGGCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCcceeeeccc---chhhhcc---CCccccEEEEEcC
Confidence            357888999999999999999999 899999999999999888865433 3322   4443332   1116899888887


Q ss_pred             Chh
Q 025101          152 LAS  154 (258)
Q Consensus       152 ~~~  154 (258)
                      +..
T Consensus        74 ~~~   76 (134)
T d2hmva1          74 ANI   76 (134)
T ss_dssp             SCH
T ss_pred             chH
Confidence            644

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00085  Score=50.79  Aligned_cols=82  Identities=15%  Similarity=0.190  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcc-C--HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcCC-
Q 025101           70 EVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDG-  141 (258)
Q Consensus        70 ~~g~~vlI~G~-g--~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~-  141 (258)
                      -+|+++||+|+ +  ++|.+.+..+...|+ +|++++++++..+.+++    .+....+.....+..+..+...+.... 
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence            36899999986 5  689999888888999 89999998776655433    443333322221112233333333222 


Q ss_pred             -CCCEEEEecCC
Q 025101          142 -GADYCFECVGL  152 (258)
Q Consensus       142 -~~d~v~d~~g~  152 (258)
                       ..|+.+++.+.
T Consensus        82 ~~~d~~v~~a~~   93 (258)
T d1qsga_          82 PKFDGFVHSIGF   93 (258)
T ss_dssp             SSEEEEEECCCC
T ss_pred             cccceEEEeecc
Confidence             68999987654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.25  E-value=0.00085  Score=50.42  Aligned_cols=96  Identities=18%  Similarity=0.288  Sum_probs=65.7

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCc-eEEcCCCCCCccHHHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-EFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~~~~i~~  137 (258)
                      +.......++.+||-+|+|. |..+..+++ .|+ +|++++.+++..+.+++.    +.. .++..+-          .+
T Consensus        33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~----------~~   99 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV----------LE   99 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG----------GG
T ss_pred             HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchheehhh----------hh
Confidence            33445667788999999985 888887777 588 899999999888877652    322 2332221          22


Q ss_pred             hcC-CCCCEEEEecCC---------hhhHHHHHHhhhcCCceEEE
Q 025101          138 MTD-GGADYCFECVGL---------ASLVQEAYACCRKGWGKTIV  172 (258)
Q Consensus       138 ~~~-~~~d~v~d~~g~---------~~~~~~~~~~l~~~~G~~v~  172 (258)
                      +.. +.||+|+-..+.         ...++.+.++|+|+ |.++.
T Consensus       100 l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg-G~lii  143 (251)
T d1wzna1         100 IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG-GVFIT  143 (251)
T ss_dssp             CCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             cccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC-cEEEE
Confidence            222 279998864322         13578899999999 98875

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.25  E-value=0.0016  Score=45.07  Aligned_cols=82  Identities=24%  Similarity=0.235  Sum_probs=57.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +|.++|+|.+|.+.++-+...|..++++.++++++.+.+.+ +|+. +.+..+    ..         ...|+||=|+..
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~-~~~~~~----~v---------~~~Div~lavkP   67 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE-TSATLP----EL---------HSDDVLILAVKP   67 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE-EESSCC----CC---------CTTSEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc-cccccc----cc---------cccceEEEecCH
Confidence            68899999999988774443453399999999999887655 6764 333322    11         157899988874


Q ss_pred             hhhHHHHHHhhhcCCceEE
Q 025101          153 ASLVQEAYACCRKGWGKTI  171 (258)
Q Consensus       153 ~~~~~~~~~~l~~~~G~~v  171 (258)
                      .. +...++-+++. ++++
T Consensus        68 ~~-~~~v~~~l~~~-~~~v   84 (152)
T d1yqga2          68 QD-MEAACKNIRTN-GALV   84 (152)
T ss_dssp             HH-HHHHHTTCCCT-TCEE
T ss_pred             HH-HHHhHHHHhhc-ccEE
Confidence            44 77777777776 6654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.0019  Score=52.06  Aligned_cols=106  Identities=20%  Similarity=0.271  Sum_probs=69.3

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-----------C----CceEEcCCCCC
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----------G----VTEFVNSKNCG  127 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-----------g----~~~vi~~~~~~  127 (258)
                      +.+..++++|+++|=+|+|. |..+.++|+..|+.+|++++.++...+.+++.           |    .........+-
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~  286 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV  286 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred             HHHHhCCCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence            45778999999999999984 99999999999876899999999877766431           1    11111111100


Q ss_pred             CccHHHHHHHhcCCCCCEEEEe-cC-C---hhhHHHHHHhhhcCCceEEEec
Q 025101          128 DKSVSQIIIDMTDGGADYCFEC-VG-L---ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       128 ~~~~~~~i~~~~~~~~d~v~d~-~g-~---~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..+.....   .. .+|+|+-. .- .   ...+.++.+.|+|| |+++..-
T Consensus       287 ~~~~~d~~---~~-~adVV~inn~~f~~~l~~~L~ei~r~LKPG-GrIVs~~  333 (406)
T d1u2za_         287 DNNRVAEL---IP-QCDVILVNNFLFDEDLNKKVEKILQTAKVG-CKIISLK  333 (406)
T ss_dssp             TCHHHHHH---GG-GCSEEEECCTTCCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             hccccccc---cc-cceEEEEecccCchHHHHHHHHHHHhcCCC-cEEEEec
Confidence            11222211   11 57888742 21 1   23477888899999 9998753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00024  Score=53.06  Aligned_cols=107  Identities=13%  Similarity=0.056  Sum_probs=67.0

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCce------------EEcCCCCCCccH
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTE------------FVNSKNCGDKSV  131 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~~------------vi~~~~~~~~~~  131 (258)
                      +...+.++.+||..|||. |..+..+++ .|+ +|++++.|++..+.+++. +...            ..........-+
T Consensus        39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  115 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY  115 (229)
T ss_dssp             HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence            445678899999999985 888888887 599 999999999888877552 2111            000000000000


Q ss_pred             HHHHHHh---cCCCCCEEEEecCC--------hhhHHHHHHhhhcCCceEEEecc
Q 025101          132 SQIIIDM---TDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       132 ~~~i~~~---~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ...+.++   ..+.+|+|+++.--        ...+..+.++|+|+ |++++...
T Consensus       116 ~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg-G~~~l~~~  169 (229)
T d2bzga1         116 CCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK-FQYLLCVL  169 (229)
T ss_dssp             ESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             EcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc-ceEEEEEc
Confidence            0001111   12268999986532        23467889999999 98876653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.17  E-value=0.0005  Score=52.61  Aligned_cols=78  Identities=14%  Similarity=0.117  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---cC-CceEE--cCCCCCCccHH---HHHHHh
Q 025101           71 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FG-VTEFV--NSKNCGDKSVS---QIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~-g--~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~---~g-~~~vi--~~~~~~~~~~~---~~i~~~  138 (258)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|++++++++..+.+++   .+ ...++  |..+  +.+..   +.+.+.
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   80 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK--EEHFKSLYNSVKKD   80 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccc--hhhHHHHHHHHHHH
Confidence            6899999985 5  799999999999999 99999998754444432   23 22222  2222  12222   233333


Q ss_pred             cCCCCCEEEEecCC
Q 025101          139 TDGGADYCFECVGL  152 (258)
Q Consensus       139 ~~~~~d~v~d~~g~  152 (258)
                      . +.+|+++.+.|.
T Consensus        81 ~-g~id~lV~nag~   93 (274)
T d2pd4a1          81 L-GSLDFIVHSVAF   93 (274)
T ss_dssp             T-SCEEEEEECCCC
T ss_pred             c-CCCCeEEeeccc
Confidence            2 379999988874

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.17  E-value=0.0025  Score=44.29  Aligned_cols=93  Identities=20%  Similarity=0.243  Sum_probs=56.7

Q ss_pred             CEEEEEccCHHHH-HHHHHHHHcCCCeEEEEc-CCcc--hHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEE
Q 025101           73 STVVIFGLGSIGL-AVAEGARLCGATRIIGVD-VISE--KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF  147 (258)
Q Consensus        73 ~~vlI~G~g~~G~-~a~~l~~~~g~~~v~~~~-~~~~--~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~  147 (258)
                      -++.|+|+|.+|. .++++++......++++. ++++  ..++++++|.....        +..+.+.+...- ++|+||
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~--------~~~d~l~~~~~~~~iDiVf   76 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY--------AGVEGLIKLPEFADIDFVF   76 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES--------SHHHHHHHSGGGGGEEEEE
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc--------cceeeeeecccccccCEEE
Confidence            4789999999986 567888876543676664 4433  35678888875331        223334333222 799999


Q ss_pred             EecCChhhHHHHHH--hhhcCCceEEEec
Q 025101          148 ECVGLASLVQEAYA--CCRKGWGKTIVLG  174 (258)
Q Consensus       148 d~~g~~~~~~~~~~--~l~~~~G~~v~~g  174 (258)
                      +++.........+.  .+..| -.++...
T Consensus        77 ~ATpag~h~~~~~~~~aa~~G-~~VID~s  104 (157)
T d1nvmb1          77 DATSASAHVQNEALLRQAKPG-IRLIDLT  104 (157)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTT-CEEEECS
T ss_pred             EcCCchhHHHhHHHHHHHHcC-CEEEEcc
Confidence            99886654554433  34443 3444443

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.0012  Score=49.64  Aligned_cols=46  Identities=33%  Similarity=0.315  Sum_probs=39.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV  117 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~  117 (258)
                      +|+.+||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++++.
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~   51 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGN   51 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence            6899999987 8999999999999999 999999998887654 55664

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.002  Score=44.86  Aligned_cols=100  Identities=15%  Similarity=0.227  Sum_probs=68.5

Q ss_pred             hhhhhhhhcC-CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHH
Q 025101           59 GVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        59 a~~~l~~~~~-~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~  137 (258)
                      .+.++.+..+ .-.|++++|+|-|-+|.-.++.++.+|+ +|++++..+-+.-.+.--|.. +.        .+.+.+  
T Consensus        10 ~~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~~-v~--------~~~~a~--   77 (163)
T d1li4a1          10 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGYE-VT--------TMDEAC--   77 (163)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC--------CHHHHT--
T ss_pred             HHHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCceE-ee--------ehhhhh--
Confidence            3444545444 3479999999999999999999999999 999999888554343334432 21        122111  


Q ss_pred             hcCCCCCEEEEecCChhh-HHHHHHhhhcCCceEEEec
Q 025101          138 MTDGGADYCFECVGLASL-VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g  174 (258)
                         ...|+++-++|+... -.+-++.++++ ..+..+|
T Consensus        78 ---~~adivvtaTGn~~vI~~eh~~~MKdg-aIL~N~G  111 (163)
T d1li4a1          78 ---QEGNIFVTTTGCIDIILGRHFEQMKDD-AIVCNIG  111 (163)
T ss_dssp             ---TTCSEEEECSSCSCSBCHHHHTTCCTT-EEEEECS
T ss_pred             ---hhccEEEecCCCccchhHHHHHhccCC-eEEEEec
Confidence               158999999998653 34667778876 5555445

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.07  E-value=0.002  Score=46.73  Aligned_cols=80  Identities=24%  Similarity=0.267  Sum_probs=57.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -.|.+|+|.|.|.+|..+++++...|+ +|++.+.+.++.+....+|.. .++..+            +..-+.|+.+=|
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~-~~~~~~------------~~~~~~DI~iPc   90 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHT-AVALED------------VLSTPCDVFAPC   90 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCGGG------------GGGCCCSEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhccc-ccCccc------------cccccceeeecc
Confidence            368999999999999999999999999 999999998888888888864 333221            112267888765


Q ss_pred             cCChhhHHHHHHhh
Q 025101          150 VGLASLVQEAYACC  163 (258)
Q Consensus       150 ~g~~~~~~~~~~~l  163 (258)
                      ......-....+.+
T Consensus        91 A~~~~I~~~~a~~i  104 (201)
T d1c1da1          91 AMGGVITTEVARTL  104 (201)
T ss_dssp             SCSCCBCHHHHHHC
T ss_pred             cccccccHHHHhhh
Confidence            54333223344444

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.05  E-value=0.00068  Score=50.40  Aligned_cols=102  Identities=16%  Similarity=0.207  Sum_probs=67.1

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      +...+++|++||=+|+|+ |..+..+++..|. .+|++++.+++..+.+++    .+....+..+.    ...+.... .
T Consensus        67 ~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~----~~~~~~~~-~  140 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA----TKPEEYRA-L  140 (227)
T ss_dssp             CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT----TCGGGGTT-T
T ss_pred             cccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEEC----CCcccccc-c
Confidence            456789999999999875 8889999998763 389999999988877654    23222222221    11111111 1


Q ss_pred             CCCCCEEEEecCC----hhhHHHHHHhhhcCCceEEEe
Q 025101          140 DGGADYCFECVGL----ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       140 ~~~~d~v~d~~g~----~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      ...+|+++..+.-    ...+..+...|+++ |.++++
T Consensus       141 ~~~vD~i~~d~~~~~~~~~~l~~~~~~Lkpg-G~lvi~  177 (227)
T d1g8aa_         141 VPKVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA  177 (227)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ccceEEEEEEccccchHHHHHHHHHHhcccC-CeEEEE
Confidence            1268888854432    22477888899999 988765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.03  E-value=0.0046  Score=43.13  Aligned_cols=72  Identities=18%  Similarity=0.258  Sum_probs=51.7

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      ++|.++|.|.+|...+.-+...|+ .|.+.++++++.+.+.+.++...        .+..+.+.     ..|+++-|+..
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~--------~~~~e~~~-----~~diii~~v~~   67 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGASAA--------RSARDAVQ-----GADVVISMLPA   67 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEEC--------SSHHHHHT-----SCSEEEECCSC
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhcccc--------chhhhhcc-----ccCeeeecccc
Confidence            368899999999988887777899 99999999999998888775321        12222221     46777777776


Q ss_pred             hhhHHH
Q 025101          153 ASLVQE  158 (258)
Q Consensus       153 ~~~~~~  158 (258)
                      ......
T Consensus        68 ~~~~~~   73 (162)
T d3cuma2          68 SQHVEG   73 (162)
T ss_dssp             HHHHHH
T ss_pred             hhhHHH
Confidence            554443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.00  E-value=0.003  Score=43.62  Aligned_cols=85  Identities=13%  Similarity=0.098  Sum_probs=61.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +|.++|+|.+|.+.+.-+...|. ++++..+++++.+.+ +++|+..+        .+..+.+.     ..|+||=|+..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~--------~~~~~~~~-----~~dvIilavkp   67 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYA--------MSHQDLID-----QVDLVILGIKP   67 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBC--------SSHHHHHH-----TCSEEEECSCG
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeee--------chhhhhhh-----ccceeeeecch
Confidence            57899999999998886666687 899999998887765 56776422        12222222     58999998865


Q ss_pred             hhhHHHHHHhhhcCCceEEEec
Q 025101          153 ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       153 ~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .. +...+..+.++ ..++.+.
T Consensus        68 ~~-~~~vl~~l~~~-~~iis~~   87 (152)
T d2ahra2          68 QL-FETVLKPLHFK-QPIISMA   87 (152)
T ss_dssp             GG-HHHHHTTSCCC-SCEEECC
T ss_pred             Hh-HHHHhhhcccc-eeEeccc
Confidence            44 78888888877 7766554

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.98  E-value=0.0014  Score=48.27  Aligned_cols=93  Identities=17%  Similarity=0.254  Sum_probs=62.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      ++++++||-+|||. |..+..+++ .|. +|++++.|++..+.+++    .+.. ..+....   .++     ....+.+
T Consensus        35 l~~~~~ILDiGcG~-G~~~~~la~-~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~---~~l-----~~~~~~f  103 (226)
T d1ve3a1          35 MKKRGKVLDLACGV-GGFSFLLED-YGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKL-----SFEDKTF  103 (226)
T ss_dssp             CCSCCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSC-----CSCTTCE
T ss_pred             cCCCCEEEEECCCc-chhhhhHhh-hhc-ccccccccccchhhhhhhhcccccccccccccc---ccc-----cccCcCc
Confidence            46789999999985 888888887 487 89999999988877764    3321 2222211   111     1112379


Q ss_pred             CEEEEecCC--------hhhHHHHHHhhhcCCceEEEe
Q 025101          144 DYCFECVGL--------ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       144 d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      |+|+-...-        ...+..+.+.|+|+ |++++.
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~lii~  140 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPS-GKFIMY  140 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcCcC-cEEEEE
Confidence            998853321        12477899999999 998754

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.98  E-value=0.0014  Score=48.52  Aligned_cols=104  Identities=15%  Similarity=0.228  Sum_probs=69.8

Q ss_pred             hcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHh--
Q 025101           66 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM--  138 (258)
Q Consensus        66 ~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~--  138 (258)
                      ..+....++||-+|.+ +|..++.+++.++ -.+|+.++.+++..+.+++    .|...-+....   .+..+.+.++  
T Consensus        54 L~~~~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~---g~a~~~L~~l~~  129 (227)
T d1susa1          54 LLKLINAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE---GPALPVLDEMIK  129 (227)
T ss_dssp             HHHHHTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHH
T ss_pred             HHHhcCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee---hHHHHHHHHHHh
Confidence            3444567899999985 4888889998764 2399999999988877654    56442222222   3344444443  


Q ss_pred             ---cCCCCCEEE-EecCC--hhhHHHHHHhhhcCCceEEEec
Q 025101          139 ---TDGGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ---~~~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                         ..+.||.|| |+--.  ..-++.+++.++++ |.++.=.
T Consensus       130 ~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~g-Giii~DN  170 (227)
T d1susa1         130 DEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN  170 (227)
T ss_dssp             CGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEET
T ss_pred             ccccCCceeEEEeccchhhhHHHHHHHHhhcCCC-cEEEEcc
Confidence               233799998 65433  33488999999999 9887543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.95  E-value=0.00034  Score=54.25  Aligned_cols=99  Identities=13%  Similarity=0.097  Sum_probs=63.9

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCc-----eEEcCCCCCCccHHHHH
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-----EFVNSKNCGDKSVSQII  135 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~-----~vi~~~~~~~~~~~~~i  135 (258)
                      ...+.+.+.+||-+|+|. |..++.+++. |+ +|++++.|++..+.+++.    +..     ..+..     .++...-
T Consensus        50 ~~l~~~~~~~vLD~GcG~-G~~~~~la~~-g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  121 (292)
T d1xvaa_          50 GLLRQHGCHRVLDVACGT-GVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE-----ANWLTLD  121 (292)
T ss_dssp             HHHHHTTCCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEE-----CCGGGHH
T ss_pred             HHhhhcCCCEEEEecCCC-cHHHHHHHHc-CC-eeeeccCchHHHHHHHHHHHhcccccccceeeeee-----ccccccc
Confidence            334455678999999974 8888888875 88 999999999988777542    211     11111     1121111


Q ss_pred             HHhcCC-CCCEEEEecCC--------------hhhHHHHHHhhhcCCceEEE
Q 025101          136 IDMTDG-GADYCFECVGL--------------ASLVQEAYACCRKGWGKTIV  172 (258)
Q Consensus       136 ~~~~~~-~~d~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~  172 (258)
                      ...... .+|.|+.....              ...+..+.+.|+|+ |.+++
T Consensus       122 ~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~  172 (292)
T d1xvaa_         122 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG-GLLVI  172 (292)
T ss_dssp             HHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE-EEEEE
T ss_pred             cccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC-cEEEE
Confidence            223333 79998853221              12588999999999 99875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.94  E-value=0.002  Score=47.90  Aligned_cols=103  Identities=12%  Similarity=0.107  Sum_probs=65.6

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCceEEcCCCCCCccHHHHHHHhcC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      +...+++|++||=+|+|. |..+..+++.....+|++++.+++..+.+++.    +....+....   .... ..... .
T Consensus        68 ~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~---~~~~-~~~~~-~  141 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQ-EYANI-V  141 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGG-GGTTT-C
T ss_pred             HhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEee---ccCc-ccccc-c
Confidence            456789999999999974 78888888875444999999999888877653    2222232222   1111 11111 1


Q ss_pred             CCCCEEEEecCC----hhhHHHHHHhhhcCCceEEEec
Q 025101          141 GGADYCFECVGL----ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~~~d~v~d~~g~----~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..+|+++.....    ...+..+...|+|+ |.+++.-
T Consensus       142 ~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg-G~~~i~~  178 (230)
T d1g8sa_         142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIAI  178 (230)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ceeEEeeccccchHHHHHHHHHHHHhcccC-ceEEEEe
Confidence            146666654432    22366778889999 9887653

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0072  Score=47.31  Aligned_cols=104  Identities=14%  Similarity=0.165  Sum_probs=68.9

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----------cCC--c--eEEcCCCCC
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----------FGV--T--EFVNSKNCG  127 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-----------~g~--~--~vi~~~~~~  127 (258)
                      +.+..++++++.||-+|+|. |..+.++|+..|+.++++++.+++..+.+++           +|.  .  .++..+- .
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~-~  220 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF-L  220 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT-T
T ss_pred             HHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc-c
Confidence            45678899999999999984 8899999999888789999999987766543           221  1  2232211 1


Q ss_pred             CccHHHHHHHhcCCCCCEEEEe-cC-Ch---hhHHHHHHhhhcCCceEEEec
Q 025101          128 DKSVSQIIIDMTDGGADYCFEC-VG-LA---SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       128 ~~~~~~~i~~~~~~~~d~v~d~-~g-~~---~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..++.+.+.     .+|+|+-. .- .+   ..+.++.+.|+|| |+++..-
T Consensus       221 ~~~~~~~~~-----~advi~~~~~~f~~~~~~~l~e~~r~LKpG-g~iv~~~  266 (328)
T d1nw3a_         221 SEEWRERIA-----NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSK  266 (328)
T ss_dssp             SHHHHHHHH-----HCSEEEECCTTTCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             ccccccccC-----cceEEEEcceecchHHHHHHHHHHHhCCCC-cEEEEec
Confidence            122333222     36788742 21 11   2467788889999 9998653

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.93  E-value=0.0012  Score=48.36  Aligned_cols=103  Identities=14%  Similarity=0.077  Sum_probs=66.0

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      ....++||++||=+|+|+ |..+..+++..+..+|++++.+++..+.+++    .+....+..+.   .+. ... ....
T Consensus        50 ~~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~---~~~-~~~-~~~~  123 (209)
T d1nt2a_          50 HRLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKP-WKY-SGIV  123 (209)
T ss_dssp             CCCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCG-GGT-TTTC
T ss_pred             ccCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeec---cCc-ccc-cccc
Confidence            346789999999999975 7788888887775589999999988876643    33222222221   110 000 0011


Q ss_pred             CCCCEEEEecCC----hhhHHHHHHhhhcCCceEEEec
Q 025101          141 GGADYCFECVGL----ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~~~d~v~d~~g~----~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..+|+++....-    ...+..+.+.|+|+ |+++.+-
T Consensus       124 ~~vd~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  160 (209)
T d1nt2a_         124 EKVDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIMV  160 (209)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ceEEEEEecccChhhHHHHHHHHHHHhccC-CeEEEEE
Confidence            157777754432    12467788899999 9987653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00082  Score=47.13  Aligned_cols=87  Identities=10%  Similarity=0.126  Sum_probs=56.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-----eEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-----EFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-----~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      .+|+|+|+|.+|.+....+...|. .|..+++++++.+.....+..     ..+...      ..+.+.     .+|++|
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----~~D~ii   68 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLTAN------DPDFLA-----TSDLLL   68 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEEES------CHHHHH-----TCSEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccccc------hhhhhc-----ccceEE
Confidence            378999999999998888888898 999999988766544333321     111111      112221     699999


Q ss_pred             EecCChhhHHHHHHh----hhcCCceEEEe
Q 025101          148 ECVGLASLVQEAYAC----CRKGWGKTIVL  173 (258)
Q Consensus       148 d~~g~~~~~~~~~~~----l~~~~G~~v~~  173 (258)
                      -++.... +...++.    +.++ ..++.+
T Consensus        69 i~vka~~-~~~~~~~l~~~~~~~-~~Iv~~   96 (167)
T d1ks9a2          69 VTLKAWQ-VSDAVKSLASTLPVT-TPILLI   96 (167)
T ss_dssp             ECSCGGG-HHHHHHHHHTTSCTT-SCEEEE
T ss_pred             Eeecccc-hHHHHHhhccccCcc-cEEeec
Confidence            9998765 4444443    3444 556554

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.90  E-value=0.0018  Score=48.66  Aligned_cols=77  Identities=14%  Similarity=0.179  Sum_probs=49.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHH---HcCCCeEEEEcCCcchHHHHHhc---CCc-e--EEcCCCCCCcc---HHHHHHHhc
Q 025101           73 STVVIFGL-GSIGLAVAEGAR---LCGATRIIGVDVISEKFEIGKRF---GVT-E--FVNSKNCGDKS---VSQIIIDMT  139 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~---~~g~~~v~~~~~~~~~~~~~~~~---g~~-~--vi~~~~~~~~~---~~~~i~~~~  139 (258)
                      ++|||+|+ +++|+++++.+.   ..|+ +|++++|++++.+.++++   +.. .  ..|..+  .++   +.+.++...
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~   79 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN--FDAYDKLVADIEGVT   79 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC--GGGHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEecc--HHHHHHHHhhhHHHh
Confidence            57999997 899999876553   3578 999999999887665432   222 2  223333  122   333333333


Q ss_pred             CC-CCCEEEEecCC
Q 025101          140 DG-GADYCFECVGL  152 (258)
Q Consensus       140 ~~-~~d~v~d~~g~  152 (258)
                      .. .+|+++++.|.
T Consensus        80 ~~~~iDiLvnNAg~   93 (248)
T d1snya_          80 KDQGLNVLFNNAGI   93 (248)
T ss_dssp             GGGCCSEEEECCCC
T ss_pred             hcCCcceEEeeccc
Confidence            33 79999998764

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.82  E-value=0.002  Score=49.66  Aligned_cols=97  Identities=18%  Similarity=0.203  Sum_probs=67.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC---------Cc-eEEcCCCCCCccHHHHHHHhc
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG---------VT-EFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g---------~~-~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ...++|||+|.|. |..+-.+++..+..+|.+++-+++-.+.++++-         .. .++.      .+-.+.+++..
T Consensus        79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~------~Da~~~l~~~~  151 (290)
T d1xj5a_          79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI------GDGVAFLKNAA  151 (290)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE------SCHHHHHHTSC
T ss_pred             CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE------ccHHHHHhhcc
Confidence            4457999998764 566678888777768999999999888887743         11 1221      34556666655


Q ss_pred             CCCCCEEE-EecCC---------hhhHHHHHHhhhcCCceEEEec
Q 025101          140 DGGADYCF-ECVGL---------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ++.+|+|| |+...         ..-++.+.++|+++ |.++.-.
T Consensus       152 ~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~  195 (290)
T d1xj5a_         152 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQA  195 (290)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             ccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCC-cEEEEec
Confidence            45899887 65431         23477889999999 9887654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.79  E-value=0.0014  Score=51.37  Aligned_cols=102  Identities=19%  Similarity=0.195  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc-CC-C
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT-DG-G  142 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~-~~-~  142 (258)
                      +++|++||=.++|. |..++.+++ .|+.+|+.++.+++..+.+++    .|...-+....   .+..+.+..+. .+ .
T Consensus       143 ~~~g~~VLDl~~g~-G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~---~d~~~~~~~~~~~~~~  217 (324)
T d2as0a2         143 VQPGDRVLDVFTYT-GGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV---GSAFEEMEKLQKKGEK  217 (324)
T ss_dssp             CCTTCEEEETTCTT-THHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHTTCC
T ss_pred             cCCCCeeecccCcc-cchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeee---chhhhhhHHHHhccCC
Confidence            57899999887643 444445554 477689999999998888754    55421111112   34555554432 23 8


Q ss_pred             CCEEE-EecCC--------------hhhHHHHHHhhhcCCceEEEeccc
Q 025101          143 ADYCF-ECVGL--------------ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       143 ~d~v~-d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ||+|+ |.-..              ...+..+.++++|+ |.++.+...
T Consensus       218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-G~lv~~s~s  265 (324)
T d2as0a2         218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCSCS  265 (324)
T ss_dssp             EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEECC
T ss_pred             CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEEeCC
Confidence            99998 43211              11366778899999 998877643

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.75  E-value=0.021  Score=38.99  Aligned_cols=92  Identities=21%  Similarity=0.246  Sum_probs=60.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHc--CCCeEEEEcCCcchH---HHHHhcCCceEEcCCCCCCccHHHHH-----------
Q 025101           73 STVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKF---EIGKRFGVTEFVNSKNCGDKSVSQII-----------  135 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~---~~~~~~g~~~vi~~~~~~~~~~~~~i-----------  135 (258)
                      ++|.|+|+ |.+|..+.++.+..  .+ +|++++....-.   +.++++.+..++-..+    +....+           
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~----~~~~~l~~~~~~~~~~v   77 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADP----SLYNDLKEALAGSSVEA   77 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCG----GGHHHHHHHTTTCSSEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccH----HHHHHHHHHhhhccccc
Confidence            78999997 99999999999875  46 888876655432   3456687765543332    222222           


Q ss_pred             -------HHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceE
Q 025101          136 -------IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT  170 (258)
Q Consensus       136 -------~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~  170 (258)
                             .+.....+|+|+.++.+...+...+..++.+ -++
T Consensus        78 ~~g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~g-k~i  118 (150)
T d1r0ka2          78 AAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKG-KTV  118 (150)
T ss_dssp             EESHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTT-SEE
T ss_pred             ccCccchheecccccceeeeecCchhHHHHHHHHHhcC-CEE
Confidence                   2222225788888776666688888888875 443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.73  E-value=0.001  Score=43.90  Aligned_cols=39  Identities=15%  Similarity=0.117  Sum_probs=33.8

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      ..++..++|+|+|+|.+|.=+++.++.+|. +|.++.+.+
T Consensus        17 ~~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          17 FNIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             TTCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             hccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            345567899999999999999999999999 999998765

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.011  Score=45.19  Aligned_cols=100  Identities=17%  Similarity=0.147  Sum_probs=58.4

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEE---EEcCCcchHHH----HHhc---CCc-e--EEcCCCCCCccHHHH-HHHh
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRII---GVDVISEKFEI----GKRF---GVT-E--FVNSKNCGDKSVSQI-IIDM  138 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~---~~~~~~~~~~~----~~~~---g~~-~--vi~~~~~~~~~~~~~-i~~~  138 (258)
                      .|||+|+ +++|.+++..+...|+ +|+   .+.++.++.+.    ++++   +.. .  ..|..+   .+-.+. +.+.
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga-~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~---~~~~~~~~~~~   79 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD---SKSVAAARERV   79 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC---HHHHHHHHHTC
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCC-CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccc---hHhhhhhhhhc
Confidence            4577787 8999999988888898 543   34544444332    2333   222 1  234433   333333 3333


Q ss_pred             cCCCCCEEEEecCChh-------------------------hHHHHHHhhh--cCCceEEEecccCC
Q 025101          139 TDGGADYCFECVGLAS-------------------------LVQEAYACCR--KGWGKTIVLGVDQP  178 (258)
Q Consensus       139 ~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~~G~~v~~g~~~~  178 (258)
                      ..+.+|+++++.|...                         ..+..+..+.  .+ |+++.+++..+
T Consensus        80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~-G~Iv~isS~~g  145 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGS-GRVLVTGSVGG  145 (285)
T ss_dssp             TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEEGGG
T ss_pred             cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCC-CceEEEechhh
Confidence            3458999999887521                         2334555553  35 89998876543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.67  E-value=0.0083  Score=43.23  Aligned_cols=86  Identities=19%  Similarity=0.135  Sum_probs=58.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|.|+|.|.+|..++++++.+|. +|++.++..+....  ..+.    ..     .++.+.+.     ..|+|+-+.
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~~~~--~~~~----~~-----~~l~~~l~-----~sDii~~~~  104 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPELE--KKGY----YV-----DSLDDLYK-----QADVISLHV  104 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHHHH--HTTC----BC-----SCHHHHHH-----HCSEEEECS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCcccccccc--ccee----ee-----cccccccc-----ccccccccC
Confidence            47899999999999999999999999 99999876543322  1121    11     23444443     378888766


Q ss_pred             CC-hhh----HHHHHHhhhcCCceEEEec
Q 025101          151 GL-ASL----VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~-~~~----~~~~~~~l~~~~G~~v~~g  174 (258)
                      .. +.+    -...++.++++ ..+|-++
T Consensus       105 plt~~T~~li~~~~l~~mk~~-a~lIN~s  132 (197)
T d1j4aa1         105 PDVPANVHMINDESIAKMKQD-VVIVNVS  132 (197)
T ss_dssp             CCCGGGTTCBSHHHHHHSCTT-EEEEECS
T ss_pred             CccccccccccHHHHhhhCCc-cEEEecC
Confidence            53 221    24567777777 7776655

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.64  E-value=0.003  Score=47.87  Aligned_cols=83  Identities=16%  Similarity=0.210  Sum_probs=53.5

Q ss_pred             CCCCCEEEEEcc-C--HHHHHHHHHHHHcCCCeEEEEcCCcchH-HH-HHhcCCce---EEcCCCC-CCccHHHHHHHhc
Q 025101           69 VEVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKF-EI-GKRFGVTE---FVNSKNC-GDKSVSQIIIDMT  139 (258)
Q Consensus        69 ~~~g~~vlI~G~-g--~~G~~a~~l~~~~g~~~v~~~~~~~~~~-~~-~~~~g~~~---vi~~~~~-~~~~~~~~i~~~~  139 (258)
                      .-+|+++||+|+ |  ++|.+.++.+...|+ +|+.+.++.++. +. .++++...   ..|..+. +.++..+.+.+..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~   81 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI   81 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcc
Confidence            347899999984 4  599999988888999 899998887765 33 34455321   2233320 0123334444443


Q ss_pred             CC--CCCEEEEecCC
Q 025101          140 DG--GADYCFECVGL  152 (258)
Q Consensus       140 ~~--~~d~v~d~~g~  152 (258)
                      +.  .+|+++.+.|.
T Consensus        82 ~~~~~ld~~i~~ag~   96 (268)
T d2h7ma1          82 GAGNKLDGVVHSIGF   96 (268)
T ss_dssp             CTTCCEEEEEECCCC
T ss_pred             ccCCCcceeeecccc
Confidence            33  68999998873

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.61  E-value=0.0095  Score=42.04  Aligned_cols=43  Identities=12%  Similarity=0.098  Sum_probs=37.2

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  116 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g  116 (258)
                      .+|-++|.|.+|..++.-+...|+ +|++.++++++.+.+.+.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~   45 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANE   45 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhc
Confidence            478899999999998888888899 8999999999988776654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0021  Score=47.33  Aligned_cols=105  Identities=15%  Similarity=0.158  Sum_probs=68.4

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHh-
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM-  138 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~-  138 (258)
                      ...+....++||-+|++ .|..++.+++.+. -.+|+.++.+++..+.+++    .|....+....   .+..+.+.+. 
T Consensus        53 ~L~~~~~~k~vLEiGt~-~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~---Gda~e~l~~~~  128 (219)
T d2avda1          53 NLARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL---KPALETLDELL  128 (219)
T ss_dssp             HHHHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHH
T ss_pred             HHHHccCCCeEEEEech-hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEE---eehhhcchhhh
Confidence            34455667899999986 3888888988763 1299999999988776654    45432222222   3444444333 


Q ss_pred             ---cCCCCCEEE-EecCC--hhhHHHHHHhhhcCCceEEEec
Q 025101          139 ---TDGGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ---~~~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                         ..+.||.|| |+--.  ...++.+++.++++ |.++.=.
T Consensus       129 ~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G-Gvii~Dn  169 (219)
T d2avda1         129 AAGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLR  169 (219)
T ss_dssp             HTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             hhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCC-cEEEEeC
Confidence               233799998 44332  23478999999998 8887543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0038  Score=47.48  Aligned_cols=95  Identities=16%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHHHHHHhcCCCCCEE
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYC  146 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v  146 (258)
                      ..++.+||-+|+|. |..+..+++.. +. ++++++.+++..+.+++.... ..+..+-   .++     ....+.+|+|
T Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d~---~~l-----~~~~~sfD~v  151 (268)
T d1p91a_          82 DDKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRL-----PFSDTSMDAI  151 (268)
T ss_dssp             CTTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT---TSC-----SBCTTCEEEE
T ss_pred             CCCCCEEEEeCCCC-cHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeeeh---hhc-----cCCCCCEEEE
Confidence            46788999999875 77777888765 55 899999999988888764422 2221111   111     1112369999


Q ss_pred             EEecCChhhHHHHHHhhhcCCceEEEecc
Q 025101          147 FECVGLASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       147 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      +...... .+.++.+.|+|+ |.++....
T Consensus       152 ~~~~~~~-~~~e~~rvLkpg-G~l~~~~p  178 (268)
T d1p91a_         152 IRIYAPC-KAEELARVVKPG-GWVITATP  178 (268)
T ss_dssp             EEESCCC-CHHHHHHHEEEE-EEEEEEEE
T ss_pred             eecCCHH-HHHHHHHHhCCC-cEEEEEee
Confidence            9655444 489999999999 99987753

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.52  E-value=0.0013  Score=47.15  Aligned_cols=38  Identities=13%  Similarity=0.141  Sum_probs=32.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcch
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  108 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~  108 (258)
                      .+++|+|+|+|+.|+.++..++..|++.|+++++++.-
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            36899999999999999999999998558888877643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.52  E-value=0.0023  Score=47.89  Aligned_cols=89  Identities=15%  Similarity=0.159  Sum_probs=59.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eEEcCCCCCCccHHHHHHHhc-CCCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMT-DGGA  143 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~-~~~~  143 (258)
                      .++++||-+|+|. |..+..+++ .|. +|++++.|++..+.+++    .|.. .++.. +         +.+.. .+.|
T Consensus        36 ~~~~~vLDiGCG~-G~~~~~l~~-~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~-d---------~~~~~~~~~f  102 (246)
T d1y8ca_          36 LVFDDYLDLACGT-GNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQ-D---------ISNLNINRKF  102 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECC-C---------GGGCCCSCCE
T ss_pred             CCCCeEEEEeCcC-CHHHHHHHH-hCC-ccEeeccchhhhhhccccccccCccceeecc-c---------hhhhcccccc
Confidence            3467999999974 777777776 477 89999999998877754    3322 23321 1         12222 2379


Q ss_pred             CEEEEecCC------h----hhHHHHHHhhhcCCceEEE
Q 025101          144 DYCFECVGL------A----SLVQEAYACCRKGWGKTIV  172 (258)
Q Consensus       144 d~v~d~~g~------~----~~~~~~~~~l~~~~G~~v~  172 (258)
                      |+|+-..+.      .    ..+..+.+.|+|+ |.++.
T Consensus       103 D~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~  140 (246)
T d1y8ca_         103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG-GVFIF  140 (246)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE-EEEEE
T ss_pred             cccceeeeeeeccCCHHHHHHHHHHHHHhCCCC-eEEEE
Confidence            999853221      1    2477888999999 98874

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.51  E-value=0.007  Score=44.49  Aligned_cols=93  Identities=19%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHH---cCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHh
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARL---CGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~---~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ++++.+||-+|+|. |..+..+++.   .++ +|++++.|++..+.+++    .+..   ..++...          .+.
T Consensus        37 ~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~----------~~~  104 (225)
T d1im8a_          37 VTADSNVYDLGCSR-GAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI----------RHV  104 (225)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT----------TTC
T ss_pred             cCCCCEEEEeccch-hhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh----------hcc
Confidence            57899999999974 7777777775   467 99999999999888865    2322   1222111          111


Q ss_pred             cCCCCCEEEEecCC--------hhhHHHHHHhhhcCCceEEEec
Q 025101          139 TDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..+.+|+++-+...        ...++.+.+.|+|+ |.++...
T Consensus       105 ~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~li~~~  147 (225)
T d1im8a_         105 EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN-GVLVLSE  147 (225)
T ss_dssp             CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCC-ceeeccc
Confidence            12256766643221        23588999999999 9998764

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.50  E-value=0.0073  Score=41.72  Aligned_cols=97  Identities=21%  Similarity=0.300  Sum_probs=67.9

Q ss_pred             hhhhhcC-CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcC
Q 025101           62 AAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        62 ~l~~~~~-~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      ++.+... +-.|++++|.|=|-+|.-.++-+|.+|+ +|++++.+|-+.-.+.--|. .+.        +..+.+     
T Consensus        12 ~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~mdGf-~v~--------~~~~a~-----   76 (163)
T d1v8ba1          12 GLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGF-NVV--------TLDEIV-----   76 (163)
T ss_dssp             HHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTC-EEC--------CHHHHT-----
T ss_pred             HHHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHHhcCC-ccC--------chhHcc-----
Confidence            3444433 4589999999999999999999999999 99999998855333322333 232        222222     


Q ss_pred             CCCCEEEEecCChhh-HHHHHHhhhcCCceEEEec
Q 025101          141 GGADYCFECVGLASL-VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g  174 (258)
                      ...|+++-++|+... -..-++.++++ ..+...|
T Consensus        77 ~~aDi~vTaTGn~~vI~~~h~~~MKdg-aIl~N~G  110 (163)
T d1v8ba1          77 DKGDFFITCTGNVDVIKLEHLLKMKNN-AVVGNIG  110 (163)
T ss_dssp             TTCSEEEECCSSSSSBCHHHHTTCCTT-CEEEECS
T ss_pred             ccCcEEEEcCCCCccccHHHHHHhhCC-eEEEecc
Confidence            158999999999764 34667788876 6666555

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.49  E-value=0.061  Score=36.53  Aligned_cols=86  Identities=14%  Similarity=-0.005  Sum_probs=56.9

Q ss_pred             CEEEEEc-cCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC--CCCEEEEe
Q 025101           73 STVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG--GADYCFEC  149 (258)
Q Consensus        73 ~~vlI~G-~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~--~~d~v~d~  149 (258)
                      ++|.|+| .|.+|...+..++..|+ .|.+.+++++........+++.++....  .......+.+..+.  .=.+++|+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~   86 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP--INLTLETIERLKPYLTENMLLADL   86 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEEC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc--hhhheeeeecccccccCCceEEEe
Confidence            5899999 69999999999999999 8999999887766655556655544333  24444444444433  22467787


Q ss_pred             cCChhhHHHHHH
Q 025101          150 VGLASLVQEAYA  161 (258)
Q Consensus       150 ~g~~~~~~~~~~  161 (258)
                      .+........+.
T Consensus        87 ~Svk~~~~~~~~   98 (152)
T d2pv7a2          87 TSVKREPLAKML   98 (152)
T ss_dssp             CSCCHHHHHHHH
T ss_pred             cccCHHHHHHHH
Confidence            764432333333

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.49  E-value=0.0041  Score=45.75  Aligned_cols=72  Identities=17%  Similarity=0.073  Sum_probs=45.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCCceE-EcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      .+|||+|+ |.+|..++..+...|.. .|+.+.|++++.+.+.. +...+ .|..+   .+   .+.+... ++|.|+.+
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~---~~---~~~~~~~-~~d~vi~~   75 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITD---AD---SINPAFQ-GIDALVIL   75 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTS---HH---HHHHHHT-TCSEEEEC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeecc---cc---ccccccc-cceeeEEE
Confidence            58999986 99999999999888852 56677788766554322 23222 23222   22   2222222 68999988


Q ss_pred             cCC
Q 025101          150 VGL  152 (258)
Q Consensus       150 ~g~  152 (258)
                      .+.
T Consensus        76 a~~   78 (252)
T d2q46a1          76 TSA   78 (252)
T ss_dssp             CCC
T ss_pred             Eee
Confidence            753

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.46  E-value=0.029  Score=39.26  Aligned_cols=97  Identities=18%  Similarity=0.207  Sum_probs=62.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC-CCeEEEEc-CCc-chHHHHHhcCCceEEcCCCCCCccHHHHHH----------HhcC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCG-ATRIIGVD-VIS-EKFEIGKRFGVTEFVNSKNCGDKSVSQIII----------DMTD  140 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~-~~~-~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~----------~~~~  140 (258)
                      +|.|.|.|-+|...++.+.... . .++++- .++ .....+.+++.+... ...   +.......          +.. 
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~-   77 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYA-ASE---EFIPRFEKEGFEVAGTLNDLL-   77 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEE-SSG---GGHHHHHHHTCCCSCBHHHHH-
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeec-ccc---cceeeecccCccccchhhhhh-
Confidence            6889999999999888887543 4 566553 333 334556666654322 111   11111111          111 


Q ss_pred             CCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          141 GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       141 ~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      .++|+|+||+|.-.+.+.+-.++..+ -+.+..+...
T Consensus        78 ~~vDvViEcTG~f~~~~~~~~hl~~G-~k~Vi~s~~~  113 (172)
T d2czca2          78 EKVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGEK  113 (172)
T ss_dssp             TTCSEEEECCSTTHHHHHHHHHHHHT-CEEEECTTSC
T ss_pred             ccCCEEEECCCCCCCHHHHHHHHHcC-CCEEEECCCC
Confidence            16999999999888788888999998 8888887543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0051  Score=47.79  Aligned_cols=98  Identities=18%  Similarity=0.294  Sum_probs=56.2

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHH---HHhcCC-c--eEEcCCCCCCccHHHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI---GKRFGV-T--EFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~---~~~~g~-~--~vi~~~~~~~~~~~~~i~  136 (258)
                      +.+.....+|++||.+|+| .|..++.+|+ .|+.+|++++.++.....   .++.+. +  .++..+-   .++     
T Consensus        27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~---~~l-----   96 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI---EEV-----   96 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT---TTS-----
T ss_pred             HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH---HHh-----
Confidence            3334456789999999987 4666666666 587799999988754322   233332 1  2333222   111     


Q ss_pred             HhcCCCCCEEEE-ecCC----h----hhHHHHHHhhhcCCceEE
Q 025101          137 DMTDGGADYCFE-CVGL----A----SLVQEAYACCRKGWGKTI  171 (258)
Q Consensus       137 ~~~~~~~d~v~d-~~g~----~----~~~~~~~~~l~~~~G~~v  171 (258)
                      ....+.+|+|+. ..+.    +    ..+...-+.|+|+ |+++
T Consensus        97 ~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~-G~ii  139 (311)
T d2fyta1          97 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG-GSVY  139 (311)
T ss_dssp             CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE-EEEE
T ss_pred             cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCC-cEEe
Confidence            011127999984 2222    1    1122334578998 9875

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.41  E-value=0.0043  Score=44.71  Aligned_cols=92  Identities=17%  Similarity=0.263  Sum_probs=60.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceE-EcCCCCCCccHHHHHHHh-cCCCCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF-VNSKNCGDKSVSQIIIDM-TDGGAD  144 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v-i~~~~~~~~~~~~~i~~~-~~~~~d  144 (258)
                      ++.+||-+|+| .|..+..+++ .|+ +|++++.+++..+.+++    .|.+.+ +...+         +.+. ..+.||
T Consensus        30 ~~grvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d---------~~~~~~~~~fD   97 (198)
T d2i6ga1          30 APGRTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVD---------LNTLTFDGEYD   97 (198)
T ss_dssp             CSCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECC---------TTTCCCCCCEE
T ss_pred             CCCcEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhhee---------ccccccccccc
Confidence            44589999997 5888888876 588 99999999988876643    444321 11111         0011 123799


Q ss_pred             EEEEecC-----Ch---hhHHHHHHhhhcCCceEEEecc
Q 025101          145 YCFECVG-----LA---SLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       145 ~v~d~~g-----~~---~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      +|+...-     .+   ..+..+.+.++|+ |.++....
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~  135 (198)
T d2i6ga1          98 FILSTVVMMFLEAQTIPGLIANMQRCTKPG-GYNLIVAA  135 (198)
T ss_dssp             EEEEESCGGGSCTTHHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             EEEEeeeeecCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            9986331     11   2577888889999 99887653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0029  Score=45.00  Aligned_cols=38  Identities=26%  Similarity=0.299  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      ....+++|+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            44567899999999999999999999999 999998765

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.40  E-value=0.0027  Score=41.72  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=32.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      ..++++|+|+|.+|.=+++.++.+|. +|.++.+.+.
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             cCCeEEEECCCccceeeeeeeccccc-EEEEEEecce
Confidence            35899999999999999999999999 9999987763

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.39  E-value=0.027  Score=39.75  Aligned_cols=137  Identities=13%  Similarity=0.056  Sum_probs=77.0

Q ss_pred             EEEEEccCHHHHH-HHHHHHHcCCC-eEEEE-cCCcchHHH-HHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           74 TVVIFGLGSIGLA-VAEGARLCGAT-RIIGV-DVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        74 ~vlI~G~g~~G~~-a~~l~~~~g~~-~v~~~-~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      ++.|+|+|.+|.- .+...+..+-. +++++ ++++++.+. .++++...++       .++.+.+.+   ..+|+|+-|
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~-------~~~~ell~~---~~id~v~I~   74 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVF-------DSYEELLES---GLVDAVDLT   74 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEE-------SCHHHHHHS---SCCSEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccccee-------eeeeccccc---cccceeecc
Confidence            6789999999964 46666655421 56654 666666554 4567866554       234443332   279999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEecccCCCCceee-chHHHH-hcCceE-EecccCCCCCCCcHHHHHHHHHcCCC
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFEVL-HSGKIL-MGSLFGGLKAKSDIPILLKRYMDKEL  222 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~  222 (258)
                      +......+.+...+..  |+-+++..+........ ....+. .++..+ .+.......+...+.++.+++.+|.+
T Consensus        75 tp~~~h~~~~~~al~~--gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~i  148 (181)
T d1zh8a1          75 LPVELNLPFIEKALRK--GVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKP  148 (181)
T ss_dssp             CCGGGHHHHHHHHHHT--TCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred             cccccccccccccccc--chhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCC
Confidence            9887767777777775  56666653322110000 011122 223333 22211110112457788889999865

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.34  E-value=0.0033  Score=49.51  Aligned_cols=47  Identities=23%  Similarity=0.253  Sum_probs=39.0

Q ss_pred             cCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025101           67 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  114 (258)
Q Consensus        67 ~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~  114 (258)
                      .-+++|++|||+|+ |-+|..++..+...|+ +|+++.|+.++.+.+++
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~~   53 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQK   53 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHHH
Confidence            44678999999987 8999999888877899 99999998877666543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.0024  Score=42.37  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=31.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      ..++++|+|+|.+|+=+++.++.+|. +|.++.+.+
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            34799999999999999999999999 999998765

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.32  E-value=0.0056  Score=46.59  Aligned_cols=96  Identities=14%  Similarity=0.115  Sum_probs=66.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-----C--c---eEEcCCCCCCccHHHHHHHhc
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-----V--T---EFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-----~--~---~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      .+.++|||+|.|. |..+..+++..+..+|.+++-+++-.+.++++-     +  +   .++.      .+....+++ +
T Consensus        74 ~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~------~D~~~~l~~-~  145 (274)
T d1iy9a_          74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV------DDGFMHIAK-S  145 (274)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE------SCSHHHHHT-C
T ss_pred             CCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEe------chHHHHHhh-c
Confidence            4568999998765 667778888777779999999999888887742     1  1   2222      334445554 3


Q ss_pred             CCCCCEEE-EecC---------ChhhHHHHHHhhhcCCceEEEec
Q 025101          140 DGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +..+|+|+ |...         ...-++.+.+.|+++ |.++.-+
T Consensus       146 ~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~-Gv~v~q~  189 (274)
T d1iy9a_         146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT  189 (274)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC-ceEEEec
Confidence            33899997 5432         123377888999999 9987654

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.31  E-value=0.058  Score=35.99  Aligned_cols=28  Identities=14%  Similarity=0.266  Sum_probs=21.3

Q ss_pred             EEEEEcc-CHHHHHHHHHHHH-cCCCeEEEE
Q 025101           74 TVVIFGL-GSIGLAVAEGARL-CGATRIIGV  102 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~-~g~~~v~~~  102 (258)
                      +|.|.|+ |-+|+.+++.... -++ .+.+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~   30 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAE   30 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTS-EEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCC-EEEEE
Confidence            5789996 9999998888765 456 55553

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0025  Score=41.87  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      .++++|+|+|.+|+=+++.++.+|. +|.++.+.+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecch
Confidence            4789999999999999999999999 9999987763

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.28  E-value=0.016  Score=40.36  Aligned_cols=133  Identities=11%  Similarity=0.058  Sum_probs=76.0

Q ss_pred             EEEEEccCHHHHH-HHHHHHHc-CCCeEEEEcCCcchHHHH-HhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           74 TVVIFGLGSIGLA-VAEGARLC-GATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        74 ~vlI~G~g~~G~~-a~~l~~~~-g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      +|.|+|+|.+|.- .+...+.. +. .++++++++++.+.+ ++++...+++.-+    +   .+    ...+|+|+-|+
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~---ll----~~~iD~V~I~t   70 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCTDYR----D---VL----QYGVDAVMIHA   70 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCSSTT----G---GG----GGCCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhcccccccccHH----H---hc----ccccceecccc
Confidence            6789999999964 56666655 45 677777777776654 5577654432211    1   12    12699999999


Q ss_pred             CChhhHHHHHHhhhcCCceEEEecccCCCCcee-echHHH-HhcCceEEecccCCCCCCCcHHHHHHHHHcCCCC
Q 025101          151 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEV-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  223 (258)
Q Consensus       151 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (258)
                      ......+.+..++..  |+-+++.......... .....+ -.++..+.--+  + .....+.++.+.+..|.+.
T Consensus        71 p~~~H~~~~~~al~~--gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~--~-r~~~~~~~~~~~~~~G~ig  140 (167)
T d1xeaa1          71 ATDVHSTLAAFFLHL--GIPTFVDKPLAASAQECENLYELAEKHHQPLYVGF--N-GFDAMVQDWLQVAAAGKLP  140 (167)
T ss_dssp             CGGGHHHHHHHHHHT--TCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEEC--G-THHHHHHHHHHHHHHTCCC
T ss_pred             ccccccccccccccc--ccccccCCCCcCCHHHHHHHHHHHHHcCCEEEEEe--C-cCCHHHHHHHHHhhcCCCC
Confidence            988878888888886  4445565332211000 011111 22343332221  1 1124466777777788543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.27  E-value=0.015  Score=41.62  Aligned_cols=88  Identities=22%  Similarity=0.282  Sum_probs=57.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|.|+|.|.+|..++++++.+|. +|++.++..... .....+....        .++.+.++     ..|+|.-+.
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-~~~~~~~~~~--------~~l~~ll~-----~sD~i~~~~  112 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRV--------STLQDLLF-----HSDCVTLHC  112 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEEC--------SSHHHHHH-----HCSEEEECC
T ss_pred             eCceEEEeccccccccceeeeecccc-ceeeccCccccc-chhhhccccc--------cchhhccc-----cCCEEEEee
Confidence            57899999999999999999999999 999998765432 2233343211        23443333     367887655


Q ss_pred             CC-hhh----HHHHHHhhhcCCceEEEec
Q 025101          151 GL-ASL----VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~-~~~----~~~~~~~l~~~~G~~v~~g  174 (258)
                      .. +.+    -...++.++++ ..+|-++
T Consensus       113 plt~~T~~li~~~~l~~mk~~-a~lIN~s  140 (193)
T d1mx3a1         113 GLNEHNHHLINDFTVKQMRQG-AFLVNTA  140 (193)
T ss_dssp             CCCTTCTTSBSHHHHTTSCTT-EEEEECS
T ss_pred             cccccchhhhhHHHHhccCCC-CeEEecC
Confidence            42 221    22556777776 6666555

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.27  E-value=0.02  Score=40.96  Aligned_cols=89  Identities=17%  Similarity=0.135  Sum_probs=59.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.++.|+|.|.+|...+++++.+|. +|++.++...........+...   .     .++.+.+.     ..|+|.-+.
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~---~-----~~l~~ll~-----~sD~v~l~~  111 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSSDEASYQATF---H-----DSLDSLLS-----VSQFFSLNA  111 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHHHHTCEE---C-----SSHHHHHH-----HCSEEEECC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-ccccccccccccchhhcccccc---c-----CCHHHHHh-----hCCeEEecC
Confidence            47899999999999999999999999 9999987665444433333211   1     23443333     378887655


Q ss_pred             CC-hhh----HHHHHHhhhcCCceEEEec
Q 025101          151 GL-ASL----VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~-~~~----~~~~~~~l~~~~G~~v~~g  174 (258)
                      .. +.+    -...++.++++ ..+|-++
T Consensus       112 plt~~T~~li~~~~l~~mk~~-a~lIN~s  139 (191)
T d1gdha1         112 PSTPETRYFFNKATIKSLPQG-AIVVNTA  139 (191)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTT-EEEEECS
T ss_pred             CCCchHhheecHHHhhCcCCc-cEEEecC
Confidence            42 221    23667777777 7766555

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.24  E-value=0.0029  Score=41.73  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=31.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      ..++++|+|+|.+|+=+++.++.+|. +|.++.+++
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            45899999999999999999999999 899988765

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.01  Score=45.98  Aligned_cols=95  Identities=20%  Similarity=0.192  Sum_probs=64.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC------C----c-eEEcCCCCCCccHHHHHHHh
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG------V----T-EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g------~----~-~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ...++|||+|.|. |..+-++++..+..+|.+++.+++-.+.++++-      +    . +++.      .+..+.+++ 
T Consensus        76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~------~Da~~~l~~-  147 (312)
T d1uira_          76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI------DDARAYLER-  147 (312)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE------SCHHHHHHH-
T ss_pred             CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE------chHHHHhhh-
Confidence            4568999998864 667777888766559999999998888777631      1    0 2221      345556654 


Q ss_pred             cCCCCCEEE-Eec---CC---------hhhHHHHHHhhhcCCceEEEe
Q 025101          139 TDGGADYCF-ECV---GL---------ASLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       139 ~~~~~d~v~-d~~---g~---------~~~~~~~~~~l~~~~G~~v~~  173 (258)
                      +++.+|+|| |..   +.         ..-++.+.+.|+++ |.++.-
T Consensus       148 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gvlv~~  194 (312)
T d1uira_         148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG-GVMGMQ  194 (312)
T ss_dssp             CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE-EEEEEE
T ss_pred             cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC-ceEEEe
Confidence            334899998 542   21         12367888999999 988753

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.23  E-value=0.013  Score=43.08  Aligned_cols=47  Identities=23%  Similarity=0.302  Sum_probs=40.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  117 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~  117 (258)
                      -.|.+|+|.|.|.+|..+++++...|+ +|++++.+..+.+.+.. .|.
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~   84 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGA   84 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCC
Confidence            468999999999999999999999999 99999988887765543 555

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.22  E-value=0.0074  Score=39.66  Aligned_cols=42  Identities=21%  Similarity=0.151  Sum_probs=36.2

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .+.....++++|+|.|+|.+|+=+++.++.+|. +|.++.+.+
T Consensus        14 ~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~   55 (121)
T d1mo9a2          14 VEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE   55 (121)
T ss_dssp             HHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence            345566789999999999999999999999998 899998765

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.22  E-value=0.0033  Score=47.19  Aligned_cols=35  Identities=17%  Similarity=0.122  Sum_probs=31.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      ..++|+|+|+|+.|++++..++..|. +|+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            35789999999999999999988999 999999764

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.043  Score=37.40  Aligned_cols=95  Identities=23%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHc--CCCeEEEEcCCcchH---HHHHhcCCceEEcCCCCCCccH---H------------
Q 025101           74 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKF---EIGKRFGVTEFVNSKNCGDKSV---S------------  132 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~---~~~~~~g~~~vi~~~~~~~~~~---~------------  132 (258)
                      +|.|+|+ |++|..+..+.+..  .+ +|++++....-.   +.++++.+..++-.++   +..   .            
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~---~~~~~l~~~l~~~~~~~~~   78 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDE---ASAKLLKTMLQQQGSRTEV   78 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSH---HHHHHHHHHHHHTTCCCEE
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccH---HHHHHHHHHhhhhcccccc
Confidence            6889997 99999999999976  35 788876554432   3445677766554433   111   1            


Q ss_pred             ----HHHHHhcCC-CCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          133 ----QIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       133 ----~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                          +.+.++... ++|+|+.++.+-..+...+..++.+ -+ +.+.
T Consensus        79 ~~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~g-k~-iaLA  123 (151)
T d1q0qa2          79 LSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAG-KT-ILLA  123 (151)
T ss_dssp             EESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTT-CE-EEEC
T ss_pred             ccChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcC-Ce-EEEE
Confidence                122222233 6899998887777688888888875 44 4443

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.20  E-value=0.013  Score=44.00  Aligned_cols=35  Identities=29%  Similarity=0.192  Sum_probs=29.8

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  109 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~  109 (258)
                      ..||+|+ +++|.+.++.+...|+ +|+.++++.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHH
Confidence            4578887 8999999999999999 999999886653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.20  E-value=0.017  Score=41.35  Aligned_cols=98  Identities=13%  Similarity=0.137  Sum_probs=63.4

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc----eEEcCCCCCCccHHHH
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT----EFVNSKNCGDKSVSQI  134 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~vi~~~~~~~~~~~~~  134 (258)
                      |.+...+.++++||-+|+|. |..++.+++ .+. +|++++.++...+.+++    .+..    .++..+      +.+ 
T Consensus        44 Li~~l~~~~~~~VLDiGcG~-G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d------~~~-  113 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGY-GVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD------LYE-  113 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECS------TTT-
T ss_pred             HHHhCCcCCCCeEEEEeecC-ChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcc------hhh-
Confidence            44666788999999999874 666777766 355 89999999988877754    3321    222211      111 


Q ss_pred             HHHhcCCCCCEEEEecC---Ch----hhHHHHHHhhhcCCceEEEe
Q 025101          135 IIDMTDGGADYCFECVG---LA----SLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       135 i~~~~~~~~d~v~d~~g---~~----~~~~~~~~~l~~~~G~~v~~  173 (258)
                        ...++.+|+|+-...   ..    ..++.+.+.|+|+ |+++++
T Consensus       114 --~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  156 (194)
T d1dusa_         114 --NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVV  156 (194)
T ss_dssp             --TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             --hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC-cEEEEE
Confidence              112237999995322   11    2367788889999 987654

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.15  E-value=0.0078  Score=45.42  Aligned_cols=94  Identities=19%  Similarity=0.114  Sum_probs=62.5

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHhcC
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      .+++|++||-.|+| +|..++.+|+.-+. +|++++.+++..+.+++    .|..   .+++.+.          .+...
T Consensus       104 ~~~~g~~VlD~~aG-~G~~~l~~a~~~~~-~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~----------~~~~~  171 (260)
T d2frna1         104 VAKPDELVVDMFAG-IGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN----------RDFPG  171 (260)
T ss_dssp             HCCTTCEEEETTCT-TTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT----------TTCCC
T ss_pred             hcCCccEEEECcce-EcHHHHHHHHhCCc-EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch----------HHhcc
Confidence            35789999999875 36666677775334 99999999998888764    4432   3443322          12222


Q ss_pred             C-CCCEEE-Eec-CChhhHHHHHHhhhcCCceEEEec
Q 025101          141 G-GADYCF-ECV-GLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       141 ~-~~d~v~-d~~-g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      . .+|.|+ +-. .+...+..+++.++++ |.+....
T Consensus       172 ~~~~D~Ii~~~p~~~~~~l~~a~~~l~~g-G~lh~~~  207 (260)
T d2frna1         172 ENIADRILMGYVVRTHEFIPKALSIAKDG-AIIHYHN  207 (260)
T ss_dssp             CSCEEEEEECCCSSGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred             CCCCCEEEECCCCchHHHHHHHHhhcCCC-CEEEEEe
Confidence            3 689776 432 3445578899999998 9876554

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0051  Score=39.94  Aligned_cols=38  Identities=26%  Similarity=0.484  Sum_probs=32.6

Q ss_pred             CCCC-CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           69 VEVG-STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        69 ~~~g-~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      +.++ .+|.|+|+|-+|.++++-++.+|+ ++++.+.+++
T Consensus         7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            3444 469999999999999999999999 9999987764

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.13  E-value=0.031  Score=39.36  Aligned_cols=95  Identities=20%  Similarity=0.214  Sum_probs=57.9

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC-CCeEEEEcC-Ccc-hHHHHHhcCCceEEcCCC--------CCC-ccHHHHHHHhcCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCG-ATRIIGVDV-ISE-KFEIGKRFGVTEFVNSKN--------CGD-KSVSQIIIDMTDG  141 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~-~~~-~~~~~~~~g~~~vi~~~~--------~~~-~~~~~~i~~~~~~  141 (258)
                      +|.|.|.|-+|..+++.+.... . .++++.. ++. ....+...+.......+.        ... .++....     .
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~-----~   76 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI-----K   76 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH-----H
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh-----h
Confidence            5789999999999999998664 5 6777643 332 233344444322211111        000 1111111     1


Q ss_pred             CCCEEEEecCChhhHHHHHHhhhcCCceEEEecc
Q 025101          142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       142 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ++|+|+||+|.....+.+-.++..+ -+++..+.
T Consensus        77 ~vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~  109 (178)
T d1b7go1          77 TSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGG  109 (178)
T ss_dssp             HCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTT
T ss_pred             cCCEEEECCCCcCCHHHHHHHHHcC-CEEEEECC
Confidence            5899999999877678888888876 67776653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.13  E-value=0.022  Score=38.98  Aligned_cols=40  Identities=18%  Similarity=0.211  Sum_probs=32.6

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  114 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~  114 (258)
                      +|.|+|.|.+|+..+.-++..|. .|++.++..++....+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~~~   41 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIERA   41 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHHhh
Confidence            68899999999999999888898 88888877766555443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.10  E-value=0.0033  Score=48.10  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=30.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      |++|+|+|+|..|++++..++..|. +|.+++.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            5789999999999999999998999 999998654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.09  E-value=0.0026  Score=42.28  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=32.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      +..++++|+|+|.+|+=+++.++.+|. +|.++.+++.
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~   59 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE   59 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccc
Confidence            345899999999999999999999999 9999988763

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.08  E-value=0.017  Score=41.22  Aligned_cols=89  Identities=16%  Similarity=0.092  Sum_probs=59.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .+.++.|+|.|.+|...+++++.+|. +|+..++........++.+....        .++.+.++     ..|+|.-+.
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~~--------~~l~~~l~-----~sD~v~~~~  108 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH--------ATREDMYP-----VCDVVTLNC  108 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHGG-----GCSEEEECS
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeecccccccccccccccc--------CCHHHHHH-----hccchhhcc
Confidence            57899999999999999999999999 99999987666666555553211        22322221     477877655


Q ss_pred             CC-hh----hHHHHHHhhhcCCceEEEec
Q 025101          151 GL-AS----LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~-~~----~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .. +.    .-...++.++++ ..+|-++
T Consensus       109 plt~~T~~li~~~~l~~mk~g-a~lIN~a  136 (188)
T d2naca1         109 PLHPETEHMINDETLKLFKRG-AYIVNTA  136 (188)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTT-EEEEECS
T ss_pred             cccccchhhhHHHHHHhCCCC-CEEEecC
Confidence            42 21    123666777776 6666554

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.04  E-value=0.031  Score=34.96  Aligned_cols=72  Identities=17%  Similarity=0.234  Sum_probs=50.0

Q ss_pred             CCCCCCEEEEEccCHHHHHH-HHHHHHcCCCeEEEEcCCc-chHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCE
Q 025101           68 NVEVGSTVVIFGLGSIGLAV-AEGARLCGATRIIGVDVIS-EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a-~~l~~~~g~~~v~~~~~~~-~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~  145 (258)
                      ..+..+++.++|-|++|..+ +++++..|+ .|.+.|... ...+.+++.|+.....+..   +.+         .+.|+
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~---~~i---------~~~d~   70 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHAE---EHI---------EGASV   70 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCCG---GGG---------TTCSE
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCcc---ccC---------CCCCE
Confidence            34567899999988888666 899999999 999998764 3456677789854433332   111         15788


Q ss_pred             EEEecCC
Q 025101          146 CFECVGL  152 (258)
Q Consensus       146 v~d~~g~  152 (258)
                      |+=+.+-
T Consensus        71 vV~S~AI   77 (96)
T d1p3da1          71 VVVSSAI   77 (96)
T ss_dssp             EEECTTS
T ss_pred             EEECCCc
Confidence            8765553

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.012  Score=44.30  Aligned_cols=41  Identities=22%  Similarity=0.171  Sum_probs=32.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHH-HHH--cCCCeEEEEcCCcchHHHH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEG-ARL--CGATRIIGVDVISEKFEIG  112 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l-~~~--~g~~~v~~~~~~~~~~~~~  112 (258)
                      +|+.++|+|+ +++|.++++. ++.  .|+ +|+++++++++.+.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~   49 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHH
Confidence            4677888887 7999987654 453  588 999999999887655

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.007  Score=43.48  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=34.5

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  112 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~  112 (258)
                      ++|.|+|+|.+|...++++...|+ +|+..+++++..+.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHH
Confidence            589999999999999999999999 999999999876544

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0036  Score=41.63  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=31.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .++++|+|+|.+|+=+++.++.+|. +|+++.+++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            4799999999999999999999999 999998875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.99  E-value=0.0071  Score=42.77  Aligned_cols=49  Identities=27%  Similarity=0.135  Sum_probs=36.7

Q ss_pred             hhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025101           62 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  112 (258)
Q Consensus        62 ~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~  112 (258)
                      +|.+...--+|++|||+|+|+++.+++..+...|  +|+++.|+.+|.+.+
T Consensus         8 ~l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~--~i~I~nR~~~ka~~l   56 (177)
T d1nvta1           8 ALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEAL   56 (177)
T ss_dssp             HHHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHHHH
T ss_pred             HHHHhCCCcCCCEEEEECCcHHHHHHHHHHcccc--ceeeehhhhhHHHHH
Confidence            3433333357899999999999998877765444  899999998887654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.96  E-value=0.0038  Score=41.38  Aligned_cols=34  Identities=12%  Similarity=0.039  Sum_probs=30.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      ..++++|+|+|.+|+=+++.++.+|. +|.++.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            34789999999999999999999999 89888754

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=95.94  E-value=0.013  Score=44.62  Aligned_cols=96  Identities=16%  Similarity=0.192  Sum_probs=65.2

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhc-
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT-  139 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~-  139 (258)
                      .++.++.+||-+|+|. |..+..+++..  +. +|++++.+++..+.+++    .+....+...+     .    .+.. 
T Consensus        23 ~~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d-----~----~~~~~   91 (281)
T d2gh1a1          23 WKITKPVHIVDYGCGY-GYLGLVLMPLLPEGS-KYTGIDSGETLLAEARELFRLLPYDSEFLEGD-----A----TEIEL   91 (281)
T ss_dssp             SCCCSCCEEEEETCTT-THHHHHHTTTSCTTC-EEEEEECCHHHHHHHHHHHHSSSSEEEEEESC-----T----TTCCC
T ss_pred             hccCCcCEEEEecCcC-CHHHHHHHHhCCCCC-EEEEEecchhHhhhhhcccccccccccccccc-----c----ccccc
Confidence            3567788999999974 88888888865  45 89999999988887765    33322121111     1    1111 


Q ss_pred             CCCCCEEEEecC-----C-hhhHHHHHHhhhcCCceEEEec
Q 025101          140 DGGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ++.+|+|+....     + ...++.+.+.|+|+ |.++...
T Consensus        92 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~lii~~  131 (281)
T d2gh1a1          92 NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKG-GKIICFE  131 (281)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             cCCceEEEEehhhhcCCCHHHHHHHHHHHcCcC-cEEEEEE
Confidence            237999986432     2 23588999999999 9988654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.94  E-value=0.058  Score=37.63  Aligned_cols=97  Identities=24%  Similarity=0.288  Sum_probs=60.4

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcC-Cc-chHHHHHhcCCceEEcCCCCCCccHHH----------HHHHhcCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDV-IS-EKFEIGKRFGVTEFVNSKNCGDKSVSQ----------IIIDMTDG  141 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~-~~-~~~~~~~~~g~~~vi~~~~~~~~~~~~----------~i~~~~~~  141 (258)
                      +|.|.|-|-+|..+++++...+--.++++.. ++ .....+.+++.+......+    ....          .+.+.. .
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~v~g~~~~~~-~   77 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPE----RVKLFEKAGIEVAGTVDDML-D   77 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGG----GHHHHHHTTCCCCEEHHHHH-H
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccc----cceeecccCcccCCChhHhh-c
Confidence            6889999999999999887665225665533 22 3334555666443222111    1110          011111 1


Q ss_pred             CCCEEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       142 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      ++|+|+||+|.-.+.+.+-.++..+ -+.+..+..
T Consensus        78 ~vDvViEcTG~f~~~~~~~~hl~~G-~K~vi~~~~  111 (171)
T d1cf2o1          78 EADIVIDCTPEGIGAKNLKMYKEKG-IKAIFQGGE  111 (171)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTS
T ss_pred             CCCEEEEccCCCCCHHHHHHHHHcC-CCEEEECCC
Confidence            6999999999877678888889887 788776643

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.93  E-value=0.023  Score=39.99  Aligned_cols=42  Identities=21%  Similarity=0.172  Sum_probs=37.0

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  116 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g  116 (258)
                      +|-|+|.|.+|...+.-+...|+ +|++.++++++.+.+.+.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~   44 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKAN   44 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHT
T ss_pred             EEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcC
Confidence            57899999999998888888899 8999999999998876655

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.91  E-value=0.035  Score=34.19  Aligned_cols=67  Identities=18%  Similarity=0.320  Sum_probs=47.0

Q ss_pred             CEEEEEccCHHHHH-HHHHHHHcCCCeEEEEcCCcc-hHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           73 STVVIFGLGSIGLA-VAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        73 ~~vlI~G~g~~G~~-a~~l~~~~g~~~v~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .+|-++|-|++|.. ++++++..|+ .|.+.|..+. ..+.++++|+.....++.   +++         .++|+|+=+.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~---~~i---------~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVPHSA---DNW---------YDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESSCCT---TSC---------CCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEeeecc---ccc---------CCCCEEEEec
Confidence            46777898888975 4788899999 9999998763 456789999864433322   222         1588888665


Q ss_pred             CC
Q 025101          151 GL  152 (258)
Q Consensus       151 g~  152 (258)
                      .-
T Consensus        69 AI   70 (89)
T d1j6ua1          69 AV   70 (89)
T ss_dssp             TC
T ss_pred             Cc
Confidence            53

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.89  E-value=0.012  Score=38.87  Aligned_cols=41  Identities=24%  Similarity=0.413  Sum_probs=34.5

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      +...-.++++|+|+|+|.+|+-+++.++.+|. +|.++.+.+
T Consensus        23 ~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          23 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             HHhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            34444567899999999999999999999999 899998765

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.88  E-value=0.063  Score=38.63  Aligned_cols=97  Identities=11%  Similarity=0.105  Sum_probs=63.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      +..||-+|+|. |..++.+|+...-.++++++.++.....+    ++.|.+++--...    +.........++.+|.|+
T Consensus        30 ~PlvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~----Da~~l~~~~~~~~~d~v~  104 (204)
T d2fcaa1          30 NPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNI----DADTLTDVFEPGEVKRVY  104 (204)
T ss_dssp             CCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECC----CGGGHHHHCCTTSCCEEE
T ss_pred             CceEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhccc----chhhhhcccCchhhhccc
Confidence            45678889985 88999999976433999999998877654    4466554321121    222222222333788887


Q ss_pred             EecCCh--------------hhHHHHHHhhhcCCceEEEec
Q 025101          148 ECVGLA--------------SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       148 d~~g~~--------------~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      -....+              ..+..+.+.|+|+ |.+.+..
T Consensus       105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg-G~l~i~T  144 (204)
T d2fcaa1         105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG-GSIHFKT  144 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS-CEEEEEE
T ss_pred             cccccccchhhhcchhhhHHHHHHHHHHhCCCC-cEEEEEE
Confidence            554432              4588899999999 9987654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.02  Score=43.73  Aligned_cols=97  Identities=13%  Similarity=0.151  Sum_probs=65.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC---------c-eEEcCCCCCCccHHHHHHHh
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV---------T-EFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~---------~-~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ....++|||+|.|. |..+-.+++..+..+|++++-+++-.+.++++-.         . +++.      .+..+.+++ 
T Consensus        76 ~~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~------~Da~~~l~~-  147 (285)
T d2o07a1          76 HPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV------GDGFEFMKQ-  147 (285)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHT-
T ss_pred             CcCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE------ccHHHHHhc-
Confidence            34568999998764 6677778887776699999999988888876421         1 1221      345555554 


Q ss_pred             cCCCCCEEE-EecCC---------hhhHHHHHHhhhcCCceEEEec
Q 025101          139 TDGGADYCF-ECVGL---------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       139 ~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.+.+|+|| |....         ..-++.+-+.|+++ |.++.-+
T Consensus       148 ~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~  192 (285)
T d2o07a1         148 NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQG  192 (285)
T ss_dssp             CSSCEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCC-CeEEEec
Confidence            334899998 64421         12367788899999 9887654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.035  Score=42.29  Aligned_cols=102  Identities=13%  Similarity=0.203  Sum_probs=61.8

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCceE-EcCCCCCCccHHHHHHHhc
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF-VNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v-i~~~~~~~~~~~~~i~~~~  139 (258)
                      ....+++|++||=..+++=|..+ +++....-.+|++.+.++.|.+.+    +.+|...+ +...+   .....   ...
T Consensus        96 ~~L~~~~g~~vLD~CAaPGgKt~-~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~---~~~~~---~~~  168 (284)
T d1sqga2          96 TWLAPQNGEHILDLCAAPGGKTT-HILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG---RYPSQ---WCG  168 (284)
T ss_dssp             HHHCCCTTCEEEEESCTTCHHHH-HHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT---TCTHH---HHT
T ss_pred             cccCccccceeEeccCccccchh-hhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc---cccch---hcc
Confidence            35578899999988543323322 333333223899999999998765    45786533 22222   12111   112


Q ss_pred             CCCCCEEE-E--ecCChh-------------------------hHHHHHHhhhcCCceEEEec
Q 025101          140 DGGADYCF-E--CVGLAS-------------------------LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~~~d~v~-d--~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .+.||.|+ |  |+|...                         .+..++..++++ |+++...
T Consensus       169 ~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g-G~lvYsT  230 (284)
T d1sqga2         169 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYAT  230 (284)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC-ceEEEee
Confidence            23799987 6  666532                         567788889998 8877443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.80  E-value=0.015  Score=41.50  Aligned_cols=83  Identities=14%  Similarity=0.092  Sum_probs=53.9

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce-----EEcCCCC-CCccHHHHHHHhcCCCCCEEE
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-----FVNSKNC-GDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-----vi~~~~~-~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      +|.|+|+|..|.+++.++...|- +|...+++++..+.+.+-+...     +.-++.. -..++.+.+.     +.|++|
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~-----~ad~ii   82 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN-----GAEIIL   82 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT-----TCSCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccC-----CCCEEE
Confidence            69999999999999988887777 8999999998887775433110     0000000 0012333332     589999


Q ss_pred             EecCChhhHHHHHHhh
Q 025101          148 ECVGLASLVQEAYACC  163 (258)
Q Consensus       148 d~~g~~~~~~~~~~~l  163 (258)
                      -+++... +...++.+
T Consensus        83 iavPs~~-~~~~~~~~   97 (189)
T d1n1ea2          83 FVIPTQF-LRGFFEKS   97 (189)
T ss_dssp             ECSCHHH-HHHHHHHH
T ss_pred             EcCcHHH-HHHHHHHH
Confidence            9998766 55555443

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.77  E-value=0.0052  Score=40.85  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=32.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      +..++++|+|+|.+|+=+++..+.+|. +|.++.+.+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence            346899999999999999999999999 999998765

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0053  Score=36.93  Aligned_cols=36  Identities=19%  Similarity=0.318  Sum_probs=31.4

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  109 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~  109 (258)
                      ++|.|+|+|-.|.|+++-++.+|+ ++.+++.+++--
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCCCc
Confidence            478899999999999999999999 899998765443

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.74  E-value=0.027  Score=37.37  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=22.8

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEE
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIG  101 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~  101 (258)
                      +|.|.|+ |-+|++..++++..|. .++.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~-~l~~   29 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGH-ELVL   29 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEE
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCC-eEEE
Confidence            6889996 9999999999998888 5544

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=95.74  E-value=0.013  Score=43.67  Aligned_cols=35  Identities=37%  Similarity=0.444  Sum_probs=31.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      -+|.+|+|.|.|.+|..+++++...|+ +|++++.+
T Consensus        29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD~   63 (242)
T d1v9la1          29 IEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSDI   63 (242)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeecc
Confidence            478999999999999999999999999 89887654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.71  E-value=0.026  Score=38.48  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=29.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      .|++|||+|+|.+|..-+..+...|+ +|++++.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            68999999999999999999999999 8888853

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.71  E-value=0.014  Score=45.39  Aligned_cols=92  Identities=17%  Similarity=0.278  Sum_probs=54.7

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCC-c--eEEcCCCCCCccHHHHHHHhcC
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGV-T--EFVNSKNCGDKSVSQIIIDMTD  140 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~-~--~vi~~~~~~~~~~~~~i~~~~~  140 (258)
                      .+.+|++||-+|+|. |..++.+++ .|+++|++++.++. ...+    +..+. +  .++..+.   .++     +...
T Consensus        30 ~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~---~~~-----~~~~   98 (316)
T d1oria_          30 HLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKV---EEV-----ELPV   98 (316)
T ss_dssp             HHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCT---TTC-----CCSS
T ss_pred             ccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccH---HHc-----cccc
Confidence            456899999999874 777766666 68778999998764 3332    23342 2  2333222   111     1112


Q ss_pred             CCCCEEEE-ecCC--------hhhHHHHHHhhhcCCceEE
Q 025101          141 GGADYCFE-CVGL--------ASLVQEAYACCRKGWGKTI  171 (258)
Q Consensus       141 ~~~d~v~d-~~g~--------~~~~~~~~~~l~~~~G~~v  171 (258)
                      +.+|+|+. ..+.        +..+...-+.|+|+ |+++
T Consensus        99 ~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~-G~ii  137 (316)
T d1oria_          99 EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-GLIF  137 (316)
T ss_dssp             SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             ceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC-eEEE
Confidence            27999874 3322        22344556789998 9875

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.70  E-value=0.0089  Score=42.52  Aligned_cols=38  Identities=26%  Similarity=0.297  Sum_probs=33.6

Q ss_pred             EEEEE-ccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025101           74 TVVIF-GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  112 (258)
Q Consensus        74 ~vlI~-G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~  112 (258)
                      +|.|+ |+|++|.++++.+...|+ +|++.+|++++.+.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l   40 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAK   40 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            67888 579999999999999999 999999999887655

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.15  Score=40.00  Aligned_cols=109  Identities=22%  Similarity=0.291  Sum_probs=68.1

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE---cCCcchHHHHHhcCCceEEcCCCC---------------
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV---DVISEKFEIGKRFGVTEFVNSKNC---------------  126 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~---~~~~~~~~~~~~~g~~~vi~~~~~---------------  126 (258)
                      +...++++..|+...+|+.|.+++..++.+|. +.+++   ..+++|.+.++.+|++.+......               
T Consensus        90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi-~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~  168 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGY-RCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRL  168 (355)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHH
T ss_pred             HcCCcccCceEEEecccchhhHHHHHHHhccC-CeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHH
Confidence            34455666776666779999999999999999 55554   334567888899998644321110               


Q ss_pred             --------------CC-------ccHHHHHHHhcCCCCCEEEEecCChhhHHH---HHHhhhcCCceEEEecc
Q 025101          127 --------------GD-------KSVSQIIIDMTDGGADYCFECVGLASLVQE---AYACCRKGWGKTIVLGV  175 (258)
Q Consensus       127 --------------~~-------~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~---~~~~l~~~~G~~v~~g~  175 (258)
                                    ++       .....+|.+..++.+|.|+-++|+..++.-   .++...+. -+++.+..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~-~kii~vep  240 (355)
T d1jbqa_         169 KNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPG-CRIIGVDP  240 (355)
T ss_dssp             HHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEEE
T ss_pred             HHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCc-ceEEeecc
Confidence                          00       001124444444578999999987654443   34444556 67766653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.68  E-value=0.025  Score=43.71  Aligned_cols=74  Identities=24%  Similarity=0.285  Sum_probs=44.1

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC--cchH---HHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEE
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI--SEKF---EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYC  146 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~--~~~~---~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v  146 (258)
                      +|||+|+ |-+|..+++.+...|+ +|+++++-  ..+.   +.+...+--.++..+- .+.+   .+.+...+ ++|+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di-~~~~---~l~~~~~~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDI-RNKN---DVTRLITKYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCT-TCHH---HHHHHHHHHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEccc-CCHH---HHHHHHHhcCCceE
Confidence            6999987 9999999998888899 89998642  2222   2333333222332211 1122   22333233 78999


Q ss_pred             EEecCC
Q 025101          147 FECVGL  152 (258)
Q Consensus       147 ~d~~g~  152 (258)
                      |.+.+.
T Consensus        77 ih~aa~   82 (338)
T d1orra_          77 FHLAGQ   82 (338)
T ss_dssp             EECCCC
T ss_pred             Eeeccc
Confidence            997753

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.67  E-value=0.0092  Score=44.09  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      .+.+++|+|+|+|+.|+.++..++..|+ +|++++.+++
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccc
Confidence            3567899999999999999999999999 8999987664

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=95.63  E-value=0.0048  Score=42.48  Aligned_cols=83  Identities=7%  Similarity=-0.122  Sum_probs=51.5

Q ss_pred             EEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCChhh
Q 025101           76 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASL  155 (258)
Q Consensus        76 lI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~  155 (258)
                      -++|+|.+|.++++.++. ++..+.+..|+.++.+.+.+.+.....+..+     .        -...|+||=|+.... 
T Consensus         3 gfIG~G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~-----~--------~~~~DiVil~v~d~~-   67 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGGKAATLEK-----H--------PELNGVVFVIVPDRY-   67 (153)
T ss_dssp             EEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCC-----C--------CC---CEEECSCTTT-
T ss_pred             EEEeCcHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccccccchhh-----h--------hccCcEEEEeccchh-
Confidence            367999999998887765 4424457899999988877755433322222     1        015899999998766 


Q ss_pred             HHHHHHhhhcCCce-EEEec
Q 025101          156 VQEAYACCRKGWGK-TIVLG  174 (258)
Q Consensus       156 ~~~~~~~l~~~~G~-~v~~g  174 (258)
                      +......++.. ++ ++.++
T Consensus        68 i~~v~~~l~~~-~~ivi~~s   86 (153)
T d2i76a2          68 IKTVANHLNLG-DAVLVHCS   86 (153)
T ss_dssp             HHHHHTTTCCS-SCCEEECC
T ss_pred             hhHHHhhhccc-ceeeeecc
Confidence            77788888755 44 44443

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.62  E-value=0.049  Score=38.52  Aligned_cols=87  Identities=24%  Similarity=0.316  Sum_probs=59.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.++.|+|.|.+|...+++++.+|. +|++.++...+.+. .+.+.. .        .++.+.+.     ..|+|+-+.
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~-~~~~~~-~--------~~l~ell~-----~sDiv~~~~  106 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPARA-AQLGIE-L--------LSLDDLLA-----RADFISVHL  106 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHHHH-HHHTCE-E--------CCHHHHHH-----HCSEEEECC
T ss_pred             cceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChhHH-hhcCce-e--------ccHHHHHh-----hCCEEEEcC
Confidence            57899999999999999999999999 99999877654433 333331 1        23433333     378888765


Q ss_pred             CC-hhh----HHHHHHhhhcCCceEEEec
Q 025101          151 GL-ASL----VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~-~~~----~~~~~~~l~~~~G~~v~~g  174 (258)
                      .. +.+    =...++.++++ ..+|-++
T Consensus       107 Plt~~T~~lin~~~l~~mk~~-a~lIN~s  134 (184)
T d1ygya1         107 PKTPETAGLIDKEALAKTKPG-VIIVNAA  134 (184)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTT-EEEEECS
T ss_pred             CCCchhhhhhhHHHHhhhCCC-ceEEEec
Confidence            53 221    23666777777 7776665

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.62  E-value=0.017  Score=44.32  Aligned_cols=96  Identities=16%  Similarity=0.148  Sum_probs=64.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC---------c-eEEcCCCCCCccHHHHHHHhc
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV---------T-EFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~---------~-~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ...++|||+|+|. |..+-.+++..+..+|.+++.+++-.+.++++-.         . +++.      .+..+.+++ +
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~------~Da~~~l~~-~  159 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI------ANGAEYVRK-F  159 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHGGG-C
T ss_pred             CCCceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh------hhHHHHHhc-C
Confidence            3458999998764 5567778887776689999999988888877421         0 2221      344555544 3


Q ss_pred             CCCCCEEE-EecCC----------hhhHHHHHHhhhcCCceEEEec
Q 025101          140 DGGADYCF-ECVGL----------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~~~d~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ++.+|+|| |+...          ..-++.+.+.|+++ |.++.-.
T Consensus       160 ~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~-Gi~v~q~  204 (295)
T d1inla_         160 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAET  204 (295)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC-cEEEEec
Confidence            34799998 54321          22477888999999 9887654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=95.60  E-value=0.013  Score=45.48  Aligned_cols=97  Identities=12%  Similarity=0.088  Sum_probs=61.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCce--EEcCCCCCCccHHHHHHHhc--CC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIIIDMT--DG  141 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~~~~--~~  141 (258)
                      .+|++||=.++|. |..++.+++  |+.+|++++.+++..+.+++    .|.+.  ++.      .+..+.++.+.  ++
T Consensus       144 ~~g~rVLDl~~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~------~d~~~~~~~~~~~~~  214 (318)
T d1wxxa2         144 FRGERALDVFSYA-GGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVRVLE------ANAFDLLRRLEKEGE  214 (318)
T ss_dssp             CCEEEEEEETCTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEE------SCHHHHHHHHHHTTC
T ss_pred             hCCCeeeccCCCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCcceee------ccHHHHhhhhHhhhc
Confidence            4689999887653 334455554  33499999999998888764    55442  232      33444444432  23


Q ss_pred             CCCEEE-Eec--C--C----------hhhHHHHHHhhhcCCceEEEeccc
Q 025101          142 GADYCF-ECV--G--L----------ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       142 ~~d~v~-d~~--g--~----------~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      .||+|+ |.-  +  .          ...+..+++.++|+ |.++.+...
T Consensus       215 ~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG-G~Lv~~scs  263 (318)
T d1wxxa2         215 RFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASCS  263 (318)
T ss_dssp             CEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred             CCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence            799998 421  1  1          12356788889999 998877643

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0073  Score=44.65  Aligned_cols=75  Identities=19%  Similarity=0.270  Sum_probs=46.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhcCCce-EEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      ++++|||+|+ |-+|..+++.+...|. .+|++++|++.+...-..-.... +.|..+     . +.+.+... ++|++|
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~-----~-~~~~~~~~-~~d~vi   85 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK-----L-DDYASAFQ-GHDVGF   85 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG-----G-GGGGGGGS-SCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccc-----c-cccccccc-cccccc
Confidence            4579999997 9999999888876674 48999998765432211111221 223322     1 12222222 699999


Q ss_pred             EecCC
Q 025101          148 ECVGL  152 (258)
Q Consensus       148 d~~g~  152 (258)
                      .|.|.
T Consensus        86 ~~~~~   90 (232)
T d2bkaa1          86 CCLGT   90 (232)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            99875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.023  Score=44.32  Aligned_cols=93  Identities=22%  Similarity=0.307  Sum_probs=53.5

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc---eEEcCCCCCCccHHHHHHHhc
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT---EFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~---~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ....+|++||-+|+|. |..+..+++ .|+++|++++.++ ..+.+    ++.+..   .++..+-   .++     ...
T Consensus        34 ~~~~~~~~VLDlGcGt-G~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~---~~l-----~~~  102 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGT-GILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL---EDV-----HLP  102 (328)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT---TTS-----CCS
T ss_pred             cccCCcCEEEEeCCCC-CHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh---hhc-----cCc
Confidence            3456899999999873 666655554 6887999999775 33333    334421   2333222   111     111


Q ss_pred             CCCCCEEEEe-cCC--------hhhHHHHHHhhhcCCceEE
Q 025101          140 DGGADYCFEC-VGL--------ASLVQEAYACCRKGWGKTI  171 (258)
Q Consensus       140 ~~~~d~v~d~-~g~--------~~~~~~~~~~l~~~~G~~v  171 (258)
                      ++.+|+|+.. .+.        ...+...-+.|+|+ |.++
T Consensus       103 ~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg-G~ii  142 (328)
T d1g6q1_         103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG-GLIF  142 (328)
T ss_dssp             SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             ccceeEEEEEecceeeccchhHHHHHHHHHhccCCC-eEEE
Confidence            2379998752 221        12234445789998 8874

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.57  E-value=0.095  Score=36.79  Aligned_cols=88  Identities=23%  Similarity=0.235  Sum_probs=60.1

Q ss_pred             EEEEEccCHHHHHHHHHHHHc-CCCeEEEE-cCCcchHH-HHHhcCCc---eEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           74 TVVIFGLGSIGLAVAEGARLC-GATRIIGV-DVISEKFE-IGKRFGVT---EFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~-~~~~~~~~-~~~~~g~~---~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      ++.|+|+|.+|...++.++.. ++ +++++ ++++++.+ +.++++..   .++       .++.+.+.+   ..+|+|+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~---~~iD~v~   71 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPESTKIH-------GSYESLLED---PEIDALY   71 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTCEEE-------SSHHHHHHC---TTCCEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccceeec-------CcHHHhhhc---cccceee
Confidence            578999999999888888766 55 67755 66666644 44556632   233       234433332   2799999


Q ss_pred             EecCChhhHHHHHHhhhcCCceEEEec
Q 025101          148 ECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       148 d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      -++......+.+..++..  |+-+.+.
T Consensus        72 I~tp~~~h~~~~~~~l~~--g~~v~~E   96 (184)
T d1ydwa1          72 VPLPTSLHVEWAIKAAEK--GKHILLE   96 (184)
T ss_dssp             ECCCGGGHHHHHHHHHTT--TCEEEEC
T ss_pred             ecccchhhcchhhhhhhc--cceeecc
Confidence            999988878888888886  5555565

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=95.57  E-value=0.015  Score=43.59  Aligned_cols=100  Identities=13%  Similarity=-0.059  Sum_probs=65.4

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCceEEcCCCCCCccHHHHHHHhc--CC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTEFVNSKNCGDKSVSQIIIDMT--DG  141 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~~i~~~~--~~  141 (258)
                      +.....++.+||=+|+|. |..+..++...+. +|++++.+++-.+.+++. .....++...   .++    .++.  ++
T Consensus        87 ~~l~~~~~~~vLD~GcG~-G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~---~d~----~~~~~~~~  157 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGI-GRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFIL---ASM----ETATLPPN  157 (254)
T ss_dssp             HTSTTCCCSEEEEETCTT-THHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEE---SCG----GGCCCCSS
T ss_pred             hhCCCCCCCeEEEecccC-ChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEE---ccc----cccccCCC
Confidence            344556778999999984 8888888876555 899999999988888763 2211222111   111    1221  23


Q ss_pred             CCCEEEEecCC-----h---hhHHHHHHhhhcCCceEEEec
Q 025101          142 GADYCFECVGL-----A---SLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       142 ~~d~v~d~~g~-----~---~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .||+|+-.-.-     +   ..+..+.+.|+|+ |.+++.-
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg-G~iii~e  197 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN-GYIFFKE  197 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCC-cEEEEEe
Confidence            79999863322     2   2477888999999 9988654

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.55  E-value=0.0059  Score=45.27  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=31.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  109 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~  109 (258)
                      ++++||+|+ +++|.+.++.+...|+ +|+++++++++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~   38 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRREGE   38 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcccc
Confidence            468899987 8999999999998999 999999887654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.54  E-value=0.0088  Score=46.23  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .....++|+|+|+|..|+.++..++..|. +|.+++.++
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            34556799999999999999988888899 999998764

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.54  E-value=0.031  Score=42.42  Aligned_cols=94  Identities=15%  Similarity=0.201  Sum_probs=62.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-C------------c---eEEcCCCCCCccHHH
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-V------------T---EFVNSKNCGDKSVSQ  133 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-~------------~---~vi~~~~~~~~~~~~  133 (258)
                      .+.++|||+|+|. |..+-.+++. +..+|.+++.+++-.+.++++- .            +   +++.      .+..+
T Consensus        71 ~~p~~vLiiG~G~-G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~------~Da~~  142 (276)
T d1mjfa_          71 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI------GDGFE  142 (276)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE------SCHHH
T ss_pred             CCCceEEEecCCc-hHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE------ChHHH
Confidence            4568999998764 4455566664 4458999999998888887632 1            0   2222      34455


Q ss_pred             HHHHhcCCCCCEEE-EecCC---------hhhHHHHHHhhhcCCceEEEec
Q 025101          134 IIIDMTDGGADYCF-ECVGL---------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       134 ~i~~~~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .+++  .+.+|+|| |....         ..-++.+.+.|+++ |.++.-+
T Consensus       143 ~l~~--~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~-Gv~v~q~  190 (276)
T d1mjfa_         143 FIKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA  190 (276)
T ss_dssp             HHHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             HHhc--cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC-ceEEEec
Confidence            5553  34899998 55432         22377888999999 9887644

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=95.51  E-value=0.21  Score=37.81  Aligned_cols=108  Identities=17%  Similarity=0.170  Sum_probs=65.6

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEc---CCcchHHHHHhcCCceEEcCCCC---------------
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD---VISEKFEIGKRFGVTEFVNSKNC---------------  126 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~---~~~~~~~~~~~~g~~~vi~~~~~---------------  126 (258)
                      +...+.++..|+...+|+.|++++..++.+|. +++++.   .++.|.+.++.+|+..++...+.               
T Consensus        53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~-~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~  131 (292)
T d2bhsa1          53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGY-RMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANR  131 (292)
T ss_dssp             HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHH
T ss_pred             HhCCcCCCceeeeecccchhHHHHHHHHhcCc-ceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhcccc
Confidence            44455566666655679999999999999998 555543   25567788899998643322210               


Q ss_pred             ----------CCcc-------HHHHHHHhcCCCCCEEEEecCChhhHH---HHHHhhhcCCceEEEec
Q 025101          127 ----------GDKS-------VSQIIIDMTDGGADYCFECVGLASLVQ---EAYACCRKGWGKTIVLG  174 (258)
Q Consensus       127 ----------~~~~-------~~~~i~~~~~~~~d~v~d~~g~~~~~~---~~~~~l~~~~G~~v~~g  174 (258)
                                ++..       ...+|.+..++.+|.++-++|+..++.   ..++...+. .+++.+-
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~-~~i~~Ve  198 (292)
T d2bhsa1         132 GEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKP-VTIVGLQ  198 (292)
T ss_dssp             TSSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSC-CEEEEEE
T ss_pred             ccccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCc-ceEEEec
Confidence                      0000       112333334446899998888755444   344444555 6665554

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.48  E-value=0.0033  Score=46.10  Aligned_cols=98  Identities=23%  Similarity=0.241  Sum_probs=59.5

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHH----hcCCceEEcCCCCCCccHHHHHHHh---
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDM---  138 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~---  138 (258)
                      +..+.++||-+|++. |..++.+++.+  +. +|+.++.+++..+.++    +.|...-+....   .+..+.+.++   
T Consensus        53 ~~~kpk~ILEiGt~~-G~Sti~la~al~~~g-~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~---Gd~~e~l~~l~~~  127 (214)
T d2cl5a1          53 REYSPSLVLELGAYC-GYSAVRMARLLQPGA-RLLTMEMNPDYAAITQQMLNFAGLQDKVTILN---GASQDLIPQLKKK  127 (214)
T ss_dssp             HHHCCSEEEEECCTT-SHHHHHHHTTCCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHGGGHHHH
T ss_pred             HhhCCCEEEEEccCc-hhHHHHHHHhCCCcc-EEEEEeccHHHHHHHHHHHHHcCCCccceeee---ccccccccchhhc
Confidence            334568999999863 77778888865  44 9999999988777664    456432122222   3344433332   


Q ss_pred             cCC-CCCEEE-EecCChh----hHHHHHHhhhcCCceEE
Q 025101          139 TDG-GADYCF-ECVGLAS----LVQEAYACCRKGWGKTI  171 (258)
Q Consensus       139 ~~~-~~d~v~-d~~g~~~----~~~~~~~~l~~~~G~~v  171 (258)
                      .+. .+|+|| |..-...    .+...++.++|+ |.++
T Consensus       128 ~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpG-GvIv  165 (214)
T d2cl5a1         128 YDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKG-TVLL  165 (214)
T ss_dssp             SCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEE-EEEE
T ss_pred             ccccccceeeecccccccccHHHHHHHhCccCCC-cEEE
Confidence            222 699887 5332221    144566778998 8654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.45  E-value=0.017  Score=38.02  Aligned_cols=38  Identities=32%  Similarity=0.441  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      ++++++++|+|+|.+|.=++..++..|. +|..+.+++.
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc
Confidence            4577999999999999999999999999 9999987763

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.42  E-value=0.019  Score=45.15  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      .++.+|||+|+ |-+|..++..+...|. .|+++++...
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~   50 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKN   50 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCc
Confidence            46889999986 9999999999998999 8999876543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.41  E-value=0.019  Score=45.74  Aligned_cols=31  Identities=32%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEc
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  103 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~  103 (258)
                      |++|||+|+ |-+|..+++.+...|+ .|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            689999987 9999999999988999 899986

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=95.41  E-value=0.083  Score=36.66  Aligned_cols=99  Identities=19%  Similarity=0.257  Sum_probs=58.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc--chHHHHHhcC-------Cce-------EEcCCCC---CCccHHHH
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRFG-------VTE-------FVNSKNC---GDKSVSQI  134 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~--~~~~~~~~~g-------~~~-------vi~~~~~---~~~~~~~~  134 (258)
                      +|.|.|-|-+|.++.+++...+. .++++-...  +...++-++.       ...       +++.+.-   +..+. +.
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i-~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p-~~   79 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGV-EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDP-KE   79 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSG-GG
T ss_pred             EEEEECCcHHHHHHHHHHhcCCC-EEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCCh-HH
Confidence            57899999999999998887788 677664332  3344443322       100       1110000   00111 11


Q ss_pred             HHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          135 IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       135 i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      + .|...++|+|+||+|.-.+.+.+..++..+ -+-+.+.-.
T Consensus        80 i-~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP  119 (168)
T d2g82a1          80 I-PWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITAP  119 (168)
T ss_dssp             C-CTGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESSC
T ss_pred             C-cccccCCceeEeccccccchHHhhhhhccc-cceeeeccc
Confidence            1 111127999999999877688888888876 655556533

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.38  E-value=0.054  Score=42.06  Aligned_cols=38  Identities=16%  Similarity=0.014  Sum_probs=30.1

Q ss_pred             CCEEEEEcc---CHHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 025101           72 GSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKFE  110 (258)
Q Consensus        72 g~~vlI~G~---g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~  110 (258)
                      ++..||+|+   .++|.+.++.+...|+ +|+.+.+++....
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA-~V~i~~~~~~~~~   42 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYNI   42 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECGGGHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCC-EEEEEeCchhhhh
Confidence            567889994   3899999999999999 8988876665433

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=95.37  E-value=0.084  Score=36.74  Aligned_cols=97  Identities=20%  Similarity=0.101  Sum_probs=54.8

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eEEcCCCCCCccHHHHHHHhcCCC
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      .+.+|.+||=.++|. |...+..++ .|+ +|+.++.+++..+.+++    +|.. .+.....    +..........+.
T Consensus        38 ~~~~g~~vLDl~~G~-G~~~i~a~~-~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~----d~~~~~~~~~~~~  110 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGS-GAVGLEAAS-EGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV----EVFLPEAKAQGER  110 (171)
T ss_dssp             HCTTCCEEEEETCSS-CHHHHHHHH-TTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH----HHHHHHHHHTTCC
T ss_pred             cccCCCeEEEecccc-chhhhhhhh-ccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeeh----hcccccccccCCc
Confidence            457889999886542 333344333 588 88899999988877653    5643 4543332    2221222223337


Q ss_pred             CCEEE-Ee---cCChhhHHHHH--HhhhcCCceEEE
Q 025101          143 ADYCF-EC---VGLASLVQEAY--ACCRKGWGKTIV  172 (258)
Q Consensus       143 ~d~v~-d~---~g~~~~~~~~~--~~l~~~~G~~v~  172 (258)
                      ||+|| |.   .+....+....  ..++++ |.++.
T Consensus       111 fD~If~DPPY~~~~~~~l~~l~~~~ll~~~-g~ivi  145 (171)
T d1ws6a1         111 FTVAFMAPPYAMDLAALFGELLASGLVEAG-GLYVL  145 (171)
T ss_dssp             EEEEEECCCTTSCTTHHHHHHHHHTCEEEE-EEEEE
T ss_pred             cceeEEccccccCHHHHHHHHHHcCCcCCC-eEEEE
Confidence            99998 42   22223244333  347777 76653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.018  Score=43.71  Aligned_cols=105  Identities=10%  Similarity=0.018  Sum_probs=59.3

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHc-----CCC-eEEEEcCCcchHHHHHhc-C----C-ceEEcCCCCCCccHHHHHH
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLC-----GAT-RIIGVDVISEKFEIGKRF-G----V-TEFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~-----g~~-~v~~~~~~~~~~~~~~~~-g----~-~~vi~~~~~~~~~~~~~i~  136 (258)
                      .+++-+||-+|+|. |..+..+++.+     +.. ++++++.++...+.+++. .    . ...++....+.+++.....
T Consensus        38 ~~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          38 TKSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             TCSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence            34445799999864 55555554432     221 578889888887777542 1    1 1123333311122222222


Q ss_pred             HhcC-CCCCEEEEecC-----C-hhhHHHHHHhhhcCCceEEEecc
Q 025101          137 DMTD-GGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       137 ~~~~-~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      .... +.||+|+-...     . ...+..+.+.|+|+ |.++....
T Consensus       117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg-G~l~i~~~  161 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN-AKMLIIVV  161 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC-CEEEEEEe
Confidence            2222 37999986332     2 34688999999999 98876643

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.26  E-value=0.027  Score=43.72  Aligned_cols=33  Identities=24%  Similarity=0.166  Sum_probs=29.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      +.+||+|+ |-+|..++..+...|+ +|+++++..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            57899997 9999999999988999 999999753

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=95.26  E-value=0.012  Score=43.13  Aligned_cols=93  Identities=12%  Similarity=0.046  Sum_probs=59.2

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--eEEcCCCCCCccHHHHHHHhc-CCCC
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNCGDKSVSQIIIDMT-DGGA  143 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~~~i~~~~-~~~~  143 (258)
                      .+..++++||-+|+|. |..+..+++ .|. +|++++.+++..+.+++...+  .++...-   +       +.. ++.|
T Consensus        16 ~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~---~-------~~~~~~~f   82 (225)
T d2p7ia1          16 TPFFRPGNLLELGSFK-GDFTSRLQE-HFN-DITCVEASEEAISHAQGRLKDGITYIHSRF---E-------DAQLPRRY   82 (225)
T ss_dssp             GGGCCSSCEEEESCTT-SHHHHHHTT-TCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCG---G-------GCCCSSCE
T ss_pred             hhhCCCCcEEEEeCCC-cHHHHHHHH-cCC-eEEEEeCcHHHhhhhhcccccccccccccc---c-------cccccccc
Confidence            3445677999999875 777766654 577 899999999999988764322  2332211   1       112 2379


Q ss_pred             CEEEEec-----CChh-hHHHHH-HhhhcCCceEEEe
Q 025101          144 DYCFECV-----GLAS-LVQEAY-ACCRKGWGKTIVL  173 (258)
Q Consensus       144 d~v~d~~-----g~~~-~~~~~~-~~l~~~~G~~v~~  173 (258)
                      |+|+-.-     .++. .+..+. ++++|+ |.++..
T Consensus        83 D~I~~~~vleh~~d~~~~l~~i~~~~Lk~g-G~l~i~  118 (225)
T d2p7ia1          83 DNIVLTHVLEHIDDPVALLKRINDDWLAEG-GRLFLV  118 (225)
T ss_dssp             EEEEEESCGGGCSSHHHHHHHHHHTTEEEE-EEEEEE
T ss_pred             ccccccceeEecCCHHHHHHHHHHHhcCCC-ceEEEE
Confidence            9987422     2222 245555 578998 988754

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.074  Score=34.90  Aligned_cols=89  Identities=19%  Similarity=0.184  Sum_probs=55.5

Q ss_pred             CCCEEEEEccCH--HH---------HHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhc
Q 025101           71 VGSTVVIFGLGS--IG---------LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        71 ~g~~vlI~G~g~--~G---------~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      .-++|||+|+|+  +|         ..++..+|..|+ +++.+..+++....-.+. +++++-..= +.+++.+-++.. 
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d~-aD~lYfePl-t~e~v~~Ii~~E-   81 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPEM-ADATYIEPI-HWEVVRKIIEKE-   81 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGGG-SSEEECSCC-CHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChhh-cceeeeecC-CHHHHHHHHHHh-
Confidence            457999999864  33         445555667799 899999998775432222 344443221 123333333322 


Q ss_pred             CCCCCEEEEecCChhhHHHHHHhhhc
Q 025101          140 DGGADYCFECVGLASLVQEAYACCRK  165 (258)
Q Consensus       140 ~~~~d~v~d~~g~~~~~~~~~~~l~~  165 (258)
                        ..|.|+-..|+...++.+.++...
T Consensus        82 --~pd~il~~~GGQtalnla~~L~~~  105 (127)
T d1a9xa3          82 --RPDAVLPTMGGQTALNCALELERQ  105 (127)
T ss_dssp             --CCSEEECSSSHHHHHHHHHHHHHT
T ss_pred             --CcCCeEEEeeeehHhHHHHHHHHc
Confidence              788999999988877777776554

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.25  E-value=0.015  Score=41.26  Aligned_cols=83  Identities=20%  Similarity=0.249  Sum_probs=57.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|++|.|+|.|.+|...+++++.+|. +|++.++++...       .....       .++.+.++     ..|+|+-++
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~~-------~~~~~-------~~l~ell~-----~sDiv~~~~  100 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEG-------PWRFT-------NSLEEALR-----EARAAVCAL  100 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCCS-------SSCCB-------SCSHHHHT-----TCSEEEECC
T ss_pred             cCceEEEeccccccccceeeeecccc-cccccccccccc-------ceeee-------echhhhhh-----ccchhhccc
Confidence            58899999999999999999999999 999998775321       11111       22322222     588888766


Q ss_pred             CC-hhh----HHHHHHhhhcCCceEEEec
Q 025101          151 GL-ASL----VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~-~~~----~~~~~~~l~~~~G~~v~~g  174 (258)
                      .. +.+    -...++.++++ ..+|.++
T Consensus       101 pl~~~t~~li~~~~l~~mk~~-ailIN~~  128 (181)
T d1qp8a1         101 PLNKHTRGLVKYQHLALMAED-AVFVNVG  128 (181)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred             ccccccccccccceeeecccc-ceEEecc
Confidence            43 221    24677788887 7777665

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.23  E-value=0.013  Score=45.97  Aligned_cols=75  Identities=13%  Similarity=0.119  Sum_probs=48.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhc----CCceE-EcCCCCCCccHHHHHHHhcCC-C
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRF----GVTEF-VNSKNCGDKSVSQIIIDMTDG-G  142 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~~~----g~~~v-i~~~~~~~~~~~~~i~~~~~~-~  142 (258)
                      +|++|||+|+ |-+|..+++.+...|+ .|+++++++.+.. ..+..    +...+ .|-.+   .+....+   ... .
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d---~~~l~~~---~~~~~   79 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD---QNKLLES---IREFQ   79 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC---HHHHHHH---HHHHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhcccCCeEEEeeccC---hHhhhhh---hhhch
Confidence            5799999986 9999999999999999 8999998776533 22221    12222 12222   3322222   222 6


Q ss_pred             CCEEEEecCC
Q 025101          143 ADYCFECVGL  152 (258)
Q Consensus       143 ~d~v~d~~g~  152 (258)
                      +|+|+.+.+.
T Consensus        80 ~~~v~~~aa~   89 (356)
T d1rkxa_          80 PEIVFHMAAQ   89 (356)
T ss_dssp             CSEEEECCSC
T ss_pred             hhhhhhhhcc
Confidence            8899987764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.033  Score=43.77  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=27.8

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      +.+||+|+ |-+|..++..+...|. .|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            57889986 9999999998888899 999999854

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.19  E-value=0.013  Score=44.03  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      .|+|+|+|+.|++++.+++..|..+|.+++++++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            6899999999999999999999767888887653

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.17  E-value=0.06  Score=41.41  Aligned_cols=102  Identities=12%  Similarity=0.050  Sum_probs=65.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--eEEcCCCC--CCccHHHHHHHhcCCCCCE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNC--GDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~--~~~~~~~~i~~~~~~~~d~  145 (258)
                      ...++|||+|.|. |..+-.+++..+..+|.+++.+++-.+.++++-..  ..++....  -..+-.+.+++ ++..+|+
T Consensus       105 ~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~yDv  182 (312)
T d2b2ca1         105 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDV  182 (312)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEE
T ss_pred             CCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CCCCCCE
Confidence            4567999998764 56677888877766999999999988888874311  11111110  11445566655 3448999


Q ss_pred             EE-EecC---C------hhhHHHHHHhhhcCCceEEEec
Q 025101          146 CF-ECVG---L------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       146 v~-d~~g---~------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      || |...   .      ..-++.+.++|+++ |.++.-+
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~-Gi~v~q~  220 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQG  220 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEE-EEEEEEC
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCC-cEEEEec
Confidence            98 4322   1      12366788899999 9988654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.17  E-value=0.014  Score=42.06  Aligned_cols=85  Identities=20%  Similarity=0.141  Sum_probs=54.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .|.+|.|+|.|.+|..++++++.+|. +|++.++...+...   ..    +..     .++.+.+.     ..|+|.-++
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~---~~----~~~-----~~l~~l~~-----~~D~v~~~~  105 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMKGDH---PD----FDY-----VSLEDLFK-----QSDVIDLHV  105 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSSCC---TT----CEE-----CCHHHHHH-----HCSEEEECC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCccchhhh---cc----hhH-----HHHHHHHH-----hcccceeee
Confidence            46899999999999999999999999 99999876543110   00    111     23333333     367777655


Q ss_pred             CC-hhh----HHHHHHhhhcCCceEEEec
Q 025101          151 GL-ASL----VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g~-~~~----~~~~~~~l~~~~G~~v~~g  174 (258)
                      .. +.+    -...++.++++ ..+|-.+
T Consensus       106 plt~~T~~li~~~~l~~mk~~-a~lIN~a  133 (199)
T d1dxya1         106 PGIEQNTHIINEAAFNLMKPG-AIVINTA  133 (199)
T ss_dssp             CCCGGGTTSBCHHHHHHSCTT-EEEEECS
T ss_pred             cccccccccccHHHhhccCCc-eEEEecc
Confidence            42 221    23566777776 6666555

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.15  E-value=0.019  Score=42.94  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=30.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      -+|.+|+|.|.|.+|..+++.+...|+ +|+++..
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavsD   67 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLSG   67 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            478999999999999999999999999 8888764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.12  E-value=0.012  Score=41.86  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=33.7

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  112 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~  112 (258)
                      ++|.|+|+|.+|...+.++...|+ +|+..+++++..+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhh
Confidence            578999999999988888888899 899999998876654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.10  E-value=0.014  Score=45.27  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      +.++|+|+|+|..|+.++..++..|. +|.+++.++
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence            35789999999999999999988898 999998765

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.035  Score=40.41  Aligned_cols=96  Identities=15%  Similarity=0.094  Sum_probs=63.6

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCce--EEcCCCCCCccHHHHHHHhc-
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTE--FVNSKNCGDKSVSQIIIDMT-  139 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~~--vi~~~~~~~~~~~~~i~~~~-  139 (258)
                      ....++.+||-+|+|. |..+..+++..+. +|++++-+++..+.+++.    +...  ++..      ++    .++. 
T Consensus        56 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~------d~----~~~~~  123 (222)
T d2ex4a1          56 PNKTGTSCALDCGAGI-GRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCC------GL----QDFTP  123 (222)
T ss_dssp             --CCCCSEEEEETCTT-THHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEEC------CG----GGCCC
T ss_pred             cCCCCCCEEEEeccCC-CHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccc------cc----ccccc
Confidence            3456778999999974 7778787766555 899999999988888763    2222  2221      11    1121 


Q ss_pred             -CCCCCEEEEec-----CCh---hhHHHHHHhhhcCCceEEEecc
Q 025101          140 -DGGADYCFECV-----GLA---SLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       140 -~~~~d~v~d~~-----g~~---~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                       .+.+|+|+...     ..+   ..+..+.+.|+|+ |.++....
T Consensus       124 ~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~-G~~~i~~~  167 (222)
T d2ex4a1         124 EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN-GIIVIKDN  167 (222)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             ccccccccccccccccchhhhhhhHHHHHHHhcCCc-ceEEEEEc
Confidence             23799998632     222   3577889999999 99987643

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.08  E-value=0.03  Score=42.02  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=28.9

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .+|||+|+ |-+|..++..++..|+ .|+++++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV-EVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEeechh
Confidence            36999987 9999999999999999 899998754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.03  E-value=0.012  Score=43.84  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=28.6

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .|+|+|+|..|+.++..++..|+++|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            489999999999999988889985699998764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.02  E-value=0.019  Score=42.52  Aligned_cols=35  Identities=26%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      ++-++|+|+|+|..|++++..+...|. +|.++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            344689999999999999999999999 89999864

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0039  Score=48.37  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=27.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      ++|||+|+ |-+|..++..+...|+ +|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            58999987 9999999988888899 8999875

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.01  E-value=0.023  Score=36.86  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=30.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .++++|+|+|.+|.=+++.++.+|. +|.++.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            4799999999999999999999999 899998765

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.01  E-value=0.028  Score=37.54  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .++++++++|+|+|.+|.=++..++..|. +|.++.+.+
T Consensus        31 ~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~   68 (133)
T d1q1ra2          31 QLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA   68 (133)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence            34678999999999999999999999999 899998765

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.00  E-value=0.016  Score=43.25  Aligned_cols=34  Identities=32%  Similarity=0.504  Sum_probs=29.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      +.|||+|+ +++|.+.++.+...|+ +|++++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence            46789986 8999999999999999 8999988754

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.00  E-value=0.054  Score=38.72  Aligned_cols=73  Identities=23%  Similarity=0.315  Sum_probs=47.7

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC-ceEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      ....+ .|++||-.|+|. |..++.++ .+|+.+|++++.+++..+.+++.-. ..++..+      +    .+ .++.|
T Consensus        43 ~~~dl-~Gk~VLDlGcGt-G~l~i~a~-~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D------~----~~-l~~~f  108 (197)
T d1ne2a_          43 NDGNI-GGRSVIDAGTGN-GILACGSY-LLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD------V----SE-ISGKY  108 (197)
T ss_dssp             HHTSS-BTSEEEEETCTT-CHHHHHHH-HTTBSEEEEEESCHHHHHHHHHHCTTSEEEECC------G----GG-CCCCE
T ss_pred             HcCCC-CCCEEEEeCCCC-cHHHHHHH-HcCCCcccccccCHHHHHHHHHccccccEEEEe------h----hh-cCCcc
Confidence            44454 599999999864 55555444 4677689999999999888887432 2343322      1    11 23479


Q ss_pred             CEEEEecC
Q 025101          144 DYCFECVG  151 (258)
Q Consensus       144 d~v~d~~g  151 (258)
                      |+||-+.+
T Consensus       109 D~Vi~NPP  116 (197)
T d1ne2a_         109 DTWIMNPP  116 (197)
T ss_dssp             EEEEECCC
T ss_pred             eEEEeCcc
Confidence            99996544

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.98  E-value=0.011  Score=44.99  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=29.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .|+|+|+|+.|++++..++..|. +|.++++.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            58999999999999999999999 899998875

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.98  E-value=0.091  Score=40.84  Aligned_cols=38  Identities=16%  Similarity=0.185  Sum_probs=32.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  109 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~  109 (258)
                      +-++|+|+|+ |.+|..++..+...|+ +|+++.|+.++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcchh
Confidence            4578999987 9999999999988999 899999877654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=94.96  E-value=0.012  Score=44.09  Aligned_cols=96  Identities=17%  Similarity=0.160  Sum_probs=59.6

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eEEcCCCCCCccHHHHHHHh-cCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDM-TDGG  142 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~-~~~~  142 (258)
                      +++|++||-+|+|. |..+..+++. |..+|+++|.|++..+.+++    .+.. .+.-..    .+...  ... .++.
T Consensus        22 ~~~~~~VLDlGCG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~----~D~~~--~~~~~~~~   93 (252)
T d1ri5a_          22 TKRGDSVLDLGCGK-GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA----QDSYG--RHMDLGKE   93 (252)
T ss_dssp             CCTTCEEEEETCTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEE----SCTTT--SCCCCSSC
T ss_pred             CCCcCEEEEecccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEE----cchhh--hccccccc
Confidence            56899999999875 6667777765 55489999999998887754    3322 221100    01000  011 1227


Q ss_pred             CCEEEEecCC------h----hhHHHHHHhhhcCCceEEEe
Q 025101          143 ADYCFECVGL------A----SLVQEAYACCRKGWGKTIVL  173 (258)
Q Consensus       143 ~d~v~d~~g~------~----~~~~~~~~~l~~~~G~~v~~  173 (258)
                      ||+|+-.-..      .    ..+..+.+.|+|+ |.++..
T Consensus        94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g-G~~i~~  133 (252)
T d1ri5a_          94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG-GYFIMT  133 (252)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred             ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCC-CEEEEE
Confidence            9998754322      1    2456777889999 998754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.087  Score=40.80  Aligned_cols=31  Identities=26%  Similarity=0.241  Sum_probs=27.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      .+|||+|+ |-+|..++..+...|+ .|+++++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH-DVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            36999987 9999999999988898 8999875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.31  Score=32.82  Aligned_cols=94  Identities=6%  Similarity=-0.029  Sum_probs=57.6

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchH-HHH---HhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF-EIG---KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~-~~~---~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      +.++|.|.|.+|..+++.+...|. +|++++.++++. +.+   +..|.. ++.-+-    .-.+.+++..-..+|.++-
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~-vi~Gd~----~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNAD-VIPGDS----NDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCE-EEESCT----TSHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcE-EEEccC----cchHHHHHhccccCCEEEE
Confidence            578999999999999999999998 888888877643 233   234553 332221    1223333332237999998


Q ss_pred             ecCChhh-HH--HHHHhhhcCCceEEEe
Q 025101          149 CVGLASL-VQ--EAYACCRKGWGKTIVL  173 (258)
Q Consensus       149 ~~g~~~~-~~--~~~~~l~~~~G~~v~~  173 (258)
                      ++++... +.  ...+.+.|. -+++.-
T Consensus        78 ~~~~d~~n~~~~~~~r~~~~~-~~iia~  104 (153)
T d1id1a_          78 LSDNDADNAFVVLSAKDMSSD-VKTVLA  104 (153)
T ss_dssp             CSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred             ccccHHHHHHHHHHHHHhCCC-CceEEE
Confidence            8887542 11  223334455 555544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.87  E-value=0.058  Score=36.77  Aligned_cols=70  Identities=19%  Similarity=0.100  Sum_probs=43.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHhcCCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      -+|.+||=.|+|. |.+.++.+ .+|+.+|+.++.+++..+.+++    ++..   .++.      .+..+.+.. ..+.
T Consensus        13 ~~g~~vlDl~~Gt-G~~~iea~-~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~------~D~~~~l~~-~~~~   83 (152)
T d2esra1          13 FNGGRVLDLFAGS-GGLAIEAV-SRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK------MEAERAIDC-LTGR   83 (152)
T ss_dssp             CCSCEEEEETCTT-CHHHHHHH-HTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC------SCHHHHHHH-BCSC
T ss_pred             CCCCeEEEcCCcc-CHHHHHHH-HhCcceeeeehhchhhhhhhhhhhhhcccccchhhhc------ccccccccc-cccc
Confidence            3688999886542 33444433 3688799999999888776654    5543   2332      244444533 3348


Q ss_pred             CCEEEE
Q 025101          143 ADYCFE  148 (258)
Q Consensus       143 ~d~v~d  148 (258)
                      +|+||-
T Consensus        84 fDiIf~   89 (152)
T d2esra1          84 FDLVFL   89 (152)
T ss_dssp             EEEEEE
T ss_pred             cceeEe
Confidence            999984

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=94.86  E-value=0.022  Score=43.12  Aligned_cols=32  Identities=22%  Similarity=0.215  Sum_probs=25.8

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .+||+|+ +++|.+.++.+...|+ +|++.+++.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~   36 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRS   36 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            3567786 8999999999999999 888876544

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=94.84  E-value=0.064  Score=41.43  Aligned_cols=98  Identities=14%  Similarity=0.129  Sum_probs=62.4

Q ss_pred             cCCCCCCEEEEEcc--CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC--c--eEEcCCCCCCccHHHHHH
Q 025101           67 ANVEVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV--T--EFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        67 ~~~~~g~~vlI~G~--g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~--~--~vi~~~~~~~~~~~~~i~  136 (258)
                      ..+.+|++||=..+  |+.++   .++ ..|+..|+.++.++...+.+++    .|.  +  .++.      .+..+.++
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl---~aa-~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~------~d~~~~l~  209 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSV---AAA-MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV------MDVFDYFK  209 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHH---HHH-HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE------SCHHHHHH
T ss_pred             HHhhCCCceeecCCCCcHHHH---HHH-hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE------ccHHHHHH
Confidence            45678999998855  44443   333 3577789999999988888764    232  2  2232      34555555


Q ss_pred             Hhc-CC-CCCEEE-EecCC--------------hhhHHHHHHhhhcCCceEEEecc
Q 025101          137 DMT-DG-GADYCF-ECVGL--------------ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       137 ~~~-~~-~~d~v~-d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ... .+ .||+|| |.-..              ...+..++++++|+ |.++.+..
T Consensus       210 ~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-G~l~~~sc  264 (317)
T d2b78a2         210 YARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIASTN  264 (317)
T ss_dssp             HHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             HHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeC
Confidence            432 23 799998 52211              12466788899999 99887653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.78  E-value=0.025  Score=39.90  Aligned_cols=81  Identities=12%  Similarity=0.003  Sum_probs=50.1

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHhcCC---------ceEEcCCCCCCccHHHHHHHhcCCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGV---------TEFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~--~~~~~~~g~---------~~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      +|.|+|+|..|.+.+..+..-|. +|....|..+.  .+.+.+..-         ...+...    .++.+.+.     +
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~-----~   71 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWP----EQLEKCLE-----N   71 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECG----GGHHHHHT-----T
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhcccccccc----ccHHHHHh-----c
Confidence            68899999999998888887787 89998874332  333322111         0011111    22322222     6


Q ss_pred             CCEEEEecCChhhHHHHHHhhhc
Q 025101          143 ADYCFECVGLASLVQEAYACCRK  165 (258)
Q Consensus       143 ~d~v~d~~g~~~~~~~~~~~l~~  165 (258)
                      .|+|+-++.... +...++.+.+
T Consensus        72 ad~Ii~avps~~-~~~~~~~l~~   93 (180)
T d1txga2          72 AEVVLLGVSTDG-VLPVMSRILP   93 (180)
T ss_dssp             CSEEEECSCGGG-HHHHHHHHTT
T ss_pred             cchhhcccchhh-hHHHHHhhcc
Confidence            999999999866 5655555544

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.68  E-value=0.066  Score=40.54  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=29.8

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      -.+|||+|+ |-+|..++..+...|. +|++++|++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCc
Confidence            356999987 9999999998888898 8999988653

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.025  Score=43.66  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=31.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      ++..+|+|+|+|..|+.++..++..|. +|.+++.++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARD   38 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            456789999999999999999999999 999997654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=94.65  E-value=0.019  Score=42.86  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=29.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcch
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  108 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~  108 (258)
                      -|+|+|+|+.|++++..+...|. +|.+++++++-
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~~   39 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKKI   39 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCC
Confidence            37899999999999888888898 89999987653

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.069  Score=41.36  Aligned_cols=75  Identities=19%  Similarity=0.191  Sum_probs=45.7

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +|||+|+ |-+|..+++.+...|..+|+++++...+...+.+..--.++..+-...+++.+.+.+    ++|+||.+.+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~----~~d~Vih~a~~   77 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK----KCDVVLPLVAI   77 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH----HCSEEEECBCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHh----CCCcccccccc
Confidence            6999987 999999988777777338999987665544433322112222110011344443332    69999987764

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=94.64  E-value=0.011  Score=41.41  Aligned_cols=81  Identities=20%  Similarity=0.213  Sum_probs=52.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHc-CCCeEEEE-cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           74 TVVIFGLGSIGLAVAEGARLC-GATRIIGV-DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~-~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      +|.|+|+|.+|...+..++.. ++ .++++ ++++++.      ....+....+     .    ... ...+|+|+.|++
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~-elvav~~~~~~~~------~~~~~~~~~~-----~----~~~-~~~~D~Vvi~tp   67 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDM-DLVGIFSRRATLD------TKTPVFDVAD-----V----DKH-ADDVDVLFLCMG   67 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSE-EEEEEEESSSCCS------SSSCEEEGGG-----G----GGT-TTTCSEEEECSC
T ss_pred             eEEEECChHHHHHHHHHHHhCCCc-EEEEEEecccccc------cccccccchh-----h----hhh-ccccceEEEeCC
Confidence            688999999999888888765 56 55554 4443321      1112222222     1    111 126999999999


Q ss_pred             ChhhHHHHHHhhhcCCceEEE
Q 025101          152 LASLVQEAYACCRKGWGKTIV  172 (258)
Q Consensus       152 ~~~~~~~~~~~l~~~~G~~v~  172 (258)
                      .....+.+..++..| -.++.
T Consensus        68 ~~~h~~~a~~aL~aG-~~vv~   87 (170)
T d1f06a1          68 SATDIPEQAPKFAQF-ACTVD   87 (170)
T ss_dssp             TTTHHHHHHHHHTTT-SEEEC
T ss_pred             CcccHHHHHHHHHCC-CcEEE
Confidence            887788999999986 66653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.58  E-value=0.076  Score=39.91  Aligned_cols=36  Identities=25%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcch
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  108 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~  108 (258)
                      -++|||+|+ |-+|..++..+...|. +|++++|+...
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCcc
Confidence            368999997 9999999999988898 89999987654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=94.47  E-value=0.022  Score=42.16  Aligned_cols=32  Identities=34%  Similarity=0.454  Sum_probs=27.8

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      |+|+|+|+.|++++..+...|. +|+++++.+.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            7889999999998888888899 9999987654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=94.41  E-value=0.27  Score=33.96  Aligned_cols=99  Identities=23%  Similarity=0.351  Sum_probs=59.5

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHhcC-------Cc-------eEEcCCCC---CCccHHH
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGKRFG-------VT-------EFVNSKNC---GDKSVSQ  133 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~---~~~~~~~~~~~g-------~~-------~vi~~~~~---~~~~~~~  133 (258)
                      +|.|.|-|-+|.++.+.+...+. .++++-.   +.+...++-++.       .+       -+++.+.-   +..+. +
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~-~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p-~   79 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGA-QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKP-E   79 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSG-G
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC-cEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCCh-H
Confidence            57889999999999998887788 6666643   234555554432       11       01111100   00010 0


Q ss_pred             HHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          134 IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       134 ~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      .+ .|..-++|+|+||+|.-.+.+.+..++..+ -+-+++...
T Consensus        80 ~i-~W~~~gvD~ViEcTG~f~~~~~~~~hl~~g-akkViisaP  120 (169)
T d1dssg1          80 NI-PWSKAGAEYIVESTGVFTTIEKASAHFKGG-AKKVIISAP  120 (169)
T ss_dssp             GC-CHHHHTCCEEEECSSSCCSHHHHGGGGTTT-CSEEEESSC
T ss_pred             HC-CccccCCCEEEecCceEcCHHHHHHHHhcC-CceEeecCC
Confidence            11 011117999999999877688888999877 666666543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=94.40  E-value=0.094  Score=38.15  Aligned_cols=89  Identities=21%  Similarity=0.303  Sum_probs=58.6

Q ss_pred             EEEEEccCHHHH-HHHHHHHHc-CCCeEEE-EcCCcchHH-HHHhcCCc--eEEcCCCCCCccHHHHHHHhcCC-CCCEE
Q 025101           74 TVVIFGLGSIGL-AVAEGARLC-GATRIIG-VDVISEKFE-IGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDG-GADYC  146 (258)
Q Consensus        74 ~vlI~G~g~~G~-~a~~l~~~~-g~~~v~~-~~~~~~~~~-~~~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~-~~d~v  146 (258)
                      +|.|+|+|.+|. ..+...+.. ++ ++++ +++++++.+ +.+++|..  .+..+.+         +.++... .+|+|
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d---------~~ell~~~~iD~V  104 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN---------FDKIAKDPKIDAV  104 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTTCCGGGEECSSS---------GGGGGGCTTCCEE
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhccccccccccCc---------hhhhcccccceee
Confidence            788999999986 344544444 66 6665 466666654 45667753  3333333         2233333 79999


Q ss_pred             EEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          147 FECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       147 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +-++......+.+..++..  |+-+++.
T Consensus       105 ~I~tp~~~H~~~~~~al~~--gk~v~~E  130 (221)
T d1h6da1         105 YIILPNSLHAEFAIRAFKA--GKHVMCE  130 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHT--TCEEEEC
T ss_pred             eeccchhhhhhHHHHhhhc--chhhhcC
Confidence            9999988778888888876  5556565

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.17  Score=34.86  Aligned_cols=95  Identities=19%  Similarity=0.276  Sum_probs=63.2

Q ss_pred             hhcchhhhhhhhhhhhhcCC-CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCC
Q 025101           50 CLLSCGVSTGVGAAWRTANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  127 (258)
Q Consensus        50 a~~~~~~~ta~~~l~~~~~~-~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~  127 (258)
                      ..+||.....+.. .+..++ -.|++|+|+|- ..+|.-+..++...|+ .|+......                     
T Consensus        15 ~~~PcTp~aI~~l-L~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t---------------------   71 (166)
T d1b0aa1          15 RLRPCTPRGIVTL-LERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT---------------------   71 (166)
T ss_dssp             SSCCHHHHHHHHH-HHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC---------------------
T ss_pred             CCCCchHHHHHHH-HHHcCcccccceEEEEeccccccHHHHHHHHHhhc-ccccccccc---------------------
Confidence            3455444433333 333333 46999999996 6899999999999999 787664322                     


Q ss_pred             CccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          128 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       128 ~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                       .++.+.++     .+|+++-++|.+..+.  -+.++++ ..++.+|..
T Consensus        72 -~~l~~~~~-----~ADivI~a~G~p~~i~--~~~vk~g-~vvIDvGi~  111 (166)
T d1b0aa1          72 -KNLRHHVE-----NADLLIVAVGKPGFIP--GDWIKEG-AIVIDVGIN  111 (166)
T ss_dssp             -SCHHHHHH-----HCSEEEECSCCTTCBC--TTTSCTT-CEEEECCCE
T ss_pred             -chhHHHHh-----hhhHhhhhccCccccc--ccccCCC-cEEEecCce
Confidence             23333333     4899999999876332  3467787 888888854

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.29  E-value=0.16  Score=39.14  Aligned_cols=95  Identities=16%  Similarity=0.132  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHH-HcCCCeEEEEcCCcchHHHH----HhcCCceEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~-~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      .+...++.|+|+|..+..-++.+. .+..++|.+..+++++.+.+    +..+.....+.        .+.+.     +.
T Consensus       122 ~~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~--------~~a~~-----~a  188 (320)
T d1omoa_         122 RKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQP--------AEEAS-----RC  188 (320)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECC--------HHHHT-----SS
T ss_pred             cCCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccch--------hhhhc-----cc
Confidence            345578899999988877666655 56888999999999886543    33444333221        11221     69


Q ss_pred             CEEEEecCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          144 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       144 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      |+|+-|+.+..-+ .-.+.++++ -++..+|....
T Consensus       189 DiV~taT~s~~P~-~~~~~l~~G-~hv~~iGs~~p  221 (320)
T d1omoa_         189 DVLVTTTPSRKPV-VKAEWVEEG-THINAIGADGP  221 (320)
T ss_dssp             SEEEECCCCSSCC-BCGGGCCTT-CEEEECSCCST
T ss_pred             cEEEEeccCcccc-cchhhcCCC-CeEeecCCccc
Confidence            9999888764411 123468888 89999986554

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.22  E-value=0.049  Score=41.79  Aligned_cols=44  Identities=18%  Similarity=0.195  Sum_probs=34.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhcCC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGV  117 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~--~~~~~~~~g~  117 (258)
                      ++|||+|+ |-+|..++..+...|+ +|+++++...  ..+.++.++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~~   47 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGI   47 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhcc
Confidence            57999987 9999999998887899 9999987553  3455555553

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=94.21  E-value=0.32  Score=37.07  Aligned_cols=100  Identities=18%  Similarity=0.180  Sum_probs=62.9

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEc--CCcchHHHHHhcCCceEEcCCCC----------------
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD--VISEKFEIGKRFGVTEFVNSKNC----------------  126 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~--~~~~~~~~~~~~g~~~vi~~~~~----------------  126 (258)
                      +...+.+++.|+...+|+-|++++..++.+|..-++++.  .++.|.+.++.+|+..+......                
T Consensus        54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~  133 (310)
T d1y7la1          54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASD  133 (310)
T ss_dssp             HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred             HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhh
Confidence            344556777766667799999999999999994344443  34456777888998654321110                


Q ss_pred             ----------CCc--------cHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhh
Q 025101          127 ----------GDK--------SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR  164 (258)
Q Consensus       127 ----------~~~--------~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  164 (258)
                                ...        ....+|.+..++.+|.|+-++|+...+.-....++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk  189 (310)
T d1y7la1         134 PSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIK  189 (310)
T ss_dssp             TTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHH
T ss_pred             cCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHH
Confidence                      000        01224444455578999999988765665655554

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.19  E-value=0.12  Score=39.66  Aligned_cols=102  Identities=19%  Similarity=0.232  Sum_probs=61.7

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHH----HhcCCceEEcCCCCCCccHHHHHHHhc
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ....+++|++||=..+++=|. +.+++...+ -..+++.+.+++|...+    +++|...++....   ....  + ...
T Consensus       110 ~~l~~~~g~~vlD~CAapGgK-t~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~---d~~~--~-~~~  182 (313)
T d1ixka_         110 VALDPKPGEIVADMAAAPGGK-TSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS---SSLH--I-GEL  182 (313)
T ss_dssp             HHHCCCTTCEEEECCSSCSHH-HHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS---CGGG--G-GGG
T ss_pred             hcccCCccceeeecccchhhh-hHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccc---cccc--c-ccc
Confidence            455789999998774432132 333443332 22799999999988665    4577665543333   1110  1 112


Q ss_pred             CCCCCEEE-E--ecCChh-------------------------hHHHHHHhhhcCCceEEEec
Q 025101          140 DGGADYCF-E--CVGLAS-------------------------LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       140 ~~~~d~v~-d--~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .+.||.|+ |  |+|...                         .+..++..++++ |+++...
T Consensus       183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g-G~lVYsT  244 (313)
T d1ixka_         183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVYST  244 (313)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC-cEEEEee
Confidence            23789887 6  666521                         567888899998 9877544

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.18  E-value=0.033  Score=42.35  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=30.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      +|.+|+|.|.|.+|..+++.+...|+ +|++++.
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vsD   67 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVGE   67 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEc
Confidence            67899999999999999999999999 8988864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.09  E-value=0.031  Score=36.26  Aligned_cols=35  Identities=14%  Similarity=0.019  Sum_probs=27.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHc---CCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLC---GATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~---g~~~v~~~~~~~  106 (258)
                      ..++++|+|+|.+|.=+++++..+   |. +|.++.+++
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~   54 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGD   54 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSS
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhccccc-ccceecccc
Confidence            358999999999998877776544   66 898888764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.08  E-value=0.045  Score=35.79  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=31.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      +++++++|+|+|.+|.=+++.++.+|. +|..+.+++
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence            456899999999999999999999999 999998765

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.04  E-value=0.027  Score=40.75  Aligned_cols=31  Identities=29%  Similarity=0.287  Sum_probs=27.4

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      |+|+|+|+.|+.++..+...|. +|++++..+
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~-kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            6888999999999999999999 899998654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.99  E-value=0.023  Score=42.92  Aligned_cols=32  Identities=31%  Similarity=0.387  Sum_probs=28.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .|+|+|+|..|+.++..++..|. +|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            58999999999999999998999 899998764

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.99  E-value=0.42  Score=32.92  Aligned_cols=95  Identities=16%  Similarity=0.230  Sum_probs=56.6

Q ss_pred             EEEEEccCHHHHHHHHHHHHc---CCCeEEEEcC--CcchHHHHHhc----C---Cc---------------eEEcCCCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLC---GATRIIGVDV--ISEKFEIGKRF----G---VT---------------EFVNSKNC  126 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~---g~~~v~~~~~--~~~~~~~~~~~----g---~~---------------~vi~~~~~  126 (258)
                      +|.|.|-|-+|.++.+.+...   .. .|+++-.  +.+...++-++    |   ..               .+++.++ 
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i-~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~-   79 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDI-EVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD-   79 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTC-EEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS-
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCE-EEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCC-
Confidence            688999999999999877643   35 6666633  23444554332    2   11               0111111 


Q ss_pred             CCccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          127 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       127 ~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                       ++++  .+.+.   ++|+|+||+|.-.+.+.+..++..+ -+-+++.-..
T Consensus        80 -p~~i--~W~~~---gvD~ViEcTG~f~t~~~~~~hl~~G-akkViiSAP~  123 (169)
T d1hdgo1          80 -PSKL--PWKDL---GVDFVIESTGVFRNREKAELHLQAG-AKKVIITAPA  123 (169)
T ss_dssp             -GGGS--CHHHH---TCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred             -hhhC--Ccccc---CCCEEEEecceeccccchhhhccCC-CceEEEeccc
Confidence             1111  11111   7999999999866688888899877 6555565343

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.99  E-value=0.031  Score=40.89  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=27.6

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      |+|+|+|..|+.++..+...|. +|.++++++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            7889999999998888888898 999998865

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.93  E-value=0.064  Score=39.46  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHH-HHcCCCeEEEEcCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDVI  105 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~-~~~g~~~v~~~~~~  105 (258)
                      -+|.+|+|.|.|.+|..+++.+ +..|+ +|++++.+
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vsd~   64 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVSDS   64 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEEET
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEeecC
Confidence            4689999999999999999887 56799 88887643

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.88  E-value=0.033  Score=42.73  Aligned_cols=33  Identities=21%  Similarity=0.306  Sum_probs=29.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      .|+|+|+|..|++++..++..|. +|.++++.++
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~~   41 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAGD   41 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCC-CEEEEEcCCC
Confidence            58999999999999999999999 8999987654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.86  E-value=0.048  Score=39.14  Aligned_cols=41  Identities=37%  Similarity=0.534  Sum_probs=35.4

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  115 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~  115 (258)
                      +|.|+|.|-+|+.++..+...|. +|++++.++++.+.+.+-
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~g   42 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQG   42 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhccc
Confidence            68899999999998888888899 999999999888777653

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.85  E-value=0.26  Score=35.09  Aligned_cols=46  Identities=26%  Similarity=0.306  Sum_probs=33.3

Q ss_pred             cCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025101           67 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  114 (258)
Q Consensus        67 ~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~  114 (258)
                      .+--.|++||=.|+|. |.+++.++ ..|+.+|++++.+++..+.+++
T Consensus        42 ~~dl~g~~vLDlg~Gt-G~l~i~a~-~~g~~~v~~vdi~~~~~~~a~~   87 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGT-GVLSYGAL-LLGAKEVICVEVDKEAVDVLIE   87 (201)
T ss_dssp             TTSSTTCEEEEETCTT-CHHHHHHH-HTTCSEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCCEEEECcCcc-hHHHHHHH-HcCCCEEEEEcCcHHHHHHHHH
Confidence            3344689999998763 44555544 4676699999999988887765

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.84  E-value=0.073  Score=36.40  Aligned_cols=42  Identities=24%  Similarity=0.243  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  110 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~  110 (258)
                      .++..+|.|+|+|.+|..++.++...+...++.++.++++.+
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~   45 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPE   45 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccch
Confidence            356688999999999998888888778668888988876643

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.83  E-value=0.11  Score=40.38  Aligned_cols=31  Identities=23%  Similarity=0.161  Sum_probs=26.7

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      +.|||+|+ |-+|..++..+...|. +|+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEEC
Confidence            57899987 9999999888888898 8999864

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.81  E-value=0.035  Score=42.32  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=31.5

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCeEEEEcCCcch
Q 025101           71 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEK  108 (258)
Q Consensus        71 ~g~~vlI~G~-g--~~G~~a~~l~~~~g~~~v~~~~~~~~~  108 (258)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|++..+++..
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~   46 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPAL   46 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchhh
Confidence            6899999996 4  799999999999999 89988876543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.80  E-value=0.29  Score=32.99  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=30.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcch
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEK  108 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~  108 (258)
                      .+.+|.|+|+|.+|..++..+...|. .++..++..+++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            46789999999999998888776664 368888888776

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.78  E-value=0.04  Score=35.77  Aligned_cols=36  Identities=14%  Similarity=-0.031  Sum_probs=27.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCC--eEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~--~v~~~~~~~  106 (258)
                      .+++++|+|+|.+|.=++..++.+|..  .|+.+.+.+
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            458999999999998888777766532  688887654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.034  Score=38.92  Aligned_cols=29  Identities=31%  Similarity=0.231  Sum_probs=26.2

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      |+|+|+|+.|+.++..+...|. +|.++++
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             EEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            7889999999999999999999 8888875

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.75  E-value=0.29  Score=34.59  Aligned_cols=106  Identities=18%  Similarity=0.229  Sum_probs=64.7

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-eEEcCCCCCCccHHHHHHHhc
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      ....+++|+.++=.++|. |-.+-.+++...-.+|++++++++..+.+++    ++.. .+++.+-   .++...+....
T Consensus        17 ~~l~~~~~~~~lD~t~G~-Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f---~~~~~~~~~~~   92 (192)
T d1m6ya2          17 EFLKPEDEKIILDCTVGE-GGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY---READFLLKTLG   92 (192)
T ss_dssp             HHHCCCTTCEEEETTCTT-SHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG---GGHHHHHHHTT
T ss_pred             HhhCCCCCCEEEEecCCC-cHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHH---hhHHHHHHHcC
Confidence            445678888776444443 3333345554432399999999999988865    3422 2343332   44554444443


Q ss_pred             CCCCCEEE-EecCC--------------hhhHHHHHHhhhcCCceEEEecc
Q 025101          140 DGGADYCF-ECVGL--------------ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       140 ~~~~d~v~-d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      .+.+|.|+ |.--+              ...+..+.+.+.++ |+++.+..
T Consensus        93 ~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g-G~l~ii~f  142 (192)
T d1m6ya2          93 IEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG-GRIVVISF  142 (192)
T ss_dssp             CSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE-EEEEEEES
T ss_pred             CCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC-Ceeeeecc
Confidence            34788875 63222              12577888899999 99887763

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=0.018  Score=40.85  Aligned_cols=35  Identities=20%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      ++..|+|+|+|+.|+.++..+...|. +|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeec
Confidence            45679999999999999988888999 888887554

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=93.71  E-value=0.019  Score=42.91  Aligned_cols=99  Identities=13%  Similarity=0.076  Sum_probs=61.6

Q ss_pred             hhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC-ce--EEcCCCCCCccHHHHHH
Q 025101           64 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV-TE--FVNSKNCGDKSVSQIII  136 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~-~~--vi~~~~~~~~~~~~~i~  136 (258)
                      .....+....+||-+|+|. |..+..+++...-.++++++. ++..+.++    +.|. +.  .+..      ++.    
T Consensus        73 ~~~~d~~~~~~VLDvGcG~-G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~------D~~----  140 (253)
T d1tw3a2          73 AAAYDWTNVRHVLDVGGGK-GGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEG------DFF----  140 (253)
T ss_dssp             HHHSCCTTCSEEEEETCTT-SHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEEC------CTT----
T ss_pred             HhhcCCccCCEEEEeCCCC-CHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccc------cch----
Confidence            3445667788999999874 888999998774328888886 44444443    3442 11  2211      111    


Q ss_pred             HhcCCCCCEEEEecC-----Ch---hhHHHHHHhhhcCCceEEEecc
Q 025101          137 DMTDGGADYCFECVG-----LA---SLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g-----~~---~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      +..++++|+|+-..-     .+   ..+..+.+.|+|+ |++++...
T Consensus       141 ~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG-G~l~i~e~  186 (253)
T d1tw3a2         141 EPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG-GRILIHER  186 (253)
T ss_dssp             SCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             hhcccchhheeeccccccCCchhhHHHHHHHHHhcCCC-cEEEEEec
Confidence            111236899884321     12   2477899999999 99987653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.71  E-value=0.052  Score=37.59  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=29.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCC-eEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~-~v~~~~~~~  106 (258)
                      .|++|+|+|+|..|+.+++.++..+.. +|+++++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            378999999999999998888877742 788887665

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.68  E-value=0.085  Score=35.99  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=30.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .+++|+|+|+|.+|.=++..+..+|++.|+++.+.+
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            467899999999999999888888997788887654

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.66  E-value=0.71  Score=35.26  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             hhcCCCCCCEEEEE-ccCHHHHHHHHHHHHcCCCeEEEE---cCCcchHHHHHhcCCceEEcCCC---------------
Q 025101           65 RTANVEVGSTVVIF-GLGSIGLAVAEGARLCGATRIIGV---DVISEKFEIGKRFGVTEFVNSKN---------------  125 (258)
Q Consensus        65 ~~~~~~~g~~vlI~-G~g~~G~~a~~l~~~~g~~~v~~~---~~~~~~~~~~~~~g~~~vi~~~~---------------  125 (258)
                      +...++.+...+|. .+|+.|.+++..++.+|. +.+++   ..++.|.+.++.+|+..+.....               
T Consensus        57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~-~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~  135 (320)
T d1z7wa1          57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGY-KLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILA  135 (320)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHH
T ss_pred             HcCCCCCCCceEEeeCCchHHHHHHHHHHhhcc-ceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHH
Confidence            34455566565555 469999999999999999 55444   33456778888899864432110               


Q ss_pred             ----------C-CCc-------cHHHHHHHhcCCCCCEEEEecCChhhHH---HHHHhhhcCCceEEEec
Q 025101          126 ----------C-GDK-------SVSQIIIDMTDGGADYCFECVGLASLVQ---EAYACCRKGWGKTIVLG  174 (258)
Q Consensus       126 ----------~-~~~-------~~~~~i~~~~~~~~d~v~d~~g~~~~~~---~~~~~l~~~~G~~v~~g  174 (258)
                                . ++.       ....+|.+...+.+|.++-++|+..++.   ..++...+. -+++.+-
T Consensus       136 ~~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~-~~~igve  204 (320)
T d1z7wa1         136 KTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNAN-VKLYGVE  204 (320)
T ss_dssp             HCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred             hCCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcc-eeeeccc
Confidence                      0 000       1122444444447899999888766444   333444455 6665443

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.2  Score=32.35  Aligned_cols=86  Identities=16%  Similarity=0.096  Sum_probs=49.5

Q ss_pred             CCCEEEEEccCH--HH---------HHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-CceEEcCCCCCCccHHHHHHHh
Q 025101           71 VGSTVVIFGLGS--IG---------LAVAEGARLCGATRIIGVDVISEKFEIGKRFG-VTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~G~g~--~G---------~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ..++|||+|+|+  +|         ..+++.+|..|+ +++.+..+++....  ++. +++++-..- +.+.+.+-++..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeTVst--d~d~aD~lYfepl-t~e~v~~Ii~~E   78 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPETVST--DYDTSDRLYFEPV-TLEDVLEIVRIE   78 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTSSTT--STTSSSEEECCCC-SHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhhhhc--ChhhcCceEEccC-CHHHHHHHHHHh
Confidence            357899999864  33         345556667799 89999888876543  222 344442221 112222222221


Q ss_pred             cCCCCCEEEEecCChhhHHHHHHhh
Q 025101          139 TDGGADYCFECVGLASLVQEAYACC  163 (258)
Q Consensus       139 ~~~~~d~v~d~~g~~~~~~~~~~~l  163 (258)
                         ..|.|+-..|+...++.+..+-
T Consensus        79 ---~p~~ii~~~GGQtalnla~~L~  100 (121)
T d1a9xa4          79 ---KPKGVIVQYGGQTPLKLARALE  100 (121)
T ss_dssp             ---CCSEEECSSSTHHHHTTHHHHH
T ss_pred             ---CCCEEEeehhhhhHHHHHHHHH
Confidence               5777887777777555554433

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.25  Score=34.17  Aligned_cols=95  Identities=15%  Similarity=0.245  Sum_probs=63.4

Q ss_pred             hhcchhhhhhhhhhhhhcCC-CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCC
Q 025101           50 CLLSCGVSTGVGAAWRTANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  127 (258)
Q Consensus        50 a~~~~~~~ta~~~l~~~~~~-~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~  127 (258)
                      +.+||.....+. |.+..++ -.|++|+|+|. ..+|.-++.++...|+ .|+......                     
T Consensus        17 ~~~PcTp~aii~-lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t---------------------   73 (170)
T d1a4ia1          17 CFIPCTPKGCLE-LIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT---------------------   73 (170)
T ss_dssp             CCCCHHHHHHHH-HHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC---------------------
T ss_pred             CCCCChHHHHHH-HHHHhCcccccceEEEEecCCccchHHHHHHHhccC-ceEEEeccc---------------------
Confidence            455654443333 3344444 37999999996 6899999999999999 788765332                     


Q ss_pred             CccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          128 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       128 ~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                       .+..+.++     ..|+++-++|.+..+  --+.++++ -.++.+|..
T Consensus        74 -~~l~~~~~-----~aDivi~a~G~~~~i--~~~~vk~g-~iviDvgi~  113 (170)
T d1a4ia1          74 -AHLDEEVN-----KGDILVVATGQPEMV--KGEWIKPG-AIVIDCGIN  113 (170)
T ss_dssp             -SSHHHHHT-----TCSEEEECCCCTTCB--CGGGSCTT-CEEEECCCB
T ss_pred             -ccHHHHHh-----hccchhhcccccccc--ccccccCC-CeEeccCcc
Confidence             22222222     588999999887732  24577887 888888754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.034  Score=42.63  Aligned_cols=32  Identities=16%  Similarity=0.313  Sum_probs=28.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      .|+|+|+|..|+.++..+...|. +|.+++.++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            47899999999999999988898 899998765

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.039  Score=39.80  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=27.1

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      |+|+|+|+.|+.++..++.+|. +|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            6888999999999999999999 89999864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.37  E-value=0.41  Score=31.12  Aligned_cols=92  Identities=14%  Similarity=0.024  Sum_probs=59.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCCh
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  153 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~  153 (258)
                      .++|.|.|.+|..+++.++  |. .+++++.++++.+.++..|...+ ..+-    .-.+.+++..-..++.++-++.+.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i-~Gd~----~~~~~L~~a~i~~A~~vi~~~~~d   73 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFV-HGDP----TRVSDLEKANVRGARAVIVNLESD   73 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEE-ESCT----TSHHHHHHTTCTTCSEEEECCSSH
T ss_pred             EEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCcccc-cccc----CCHHHHHHhhhhcCcEEEEeccch
Confidence            5788899999998877664  44 67888989999888888887533 3221    223344443222789999888765


Q ss_pred             hh---HHHHHHhhhcCCceEEEec
Q 025101          154 SL---VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       154 ~~---~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..   +-...+.+.|. .+++...
T Consensus        74 ~~n~~~~~~~r~~~~~-~~iia~~   96 (129)
T d2fy8a1          74 SETIHCILGIRKIDES-VRIIAEA   96 (129)
T ss_dssp             HHHHHHHHHHHHHCSS-SCEEEEC
T ss_pred             hhhHHHHHHHHHHCCC-ceEEEEE
Confidence            41   22344455566 6666554

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=93.36  E-value=0.37  Score=32.82  Aligned_cols=85  Identities=16%  Similarity=0.188  Sum_probs=55.4

Q ss_pred             EEEEEccCHHHHH-HHHHHHHc-CCCeEEEE-cCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           74 TVVIFGLGSIGLA-VAEGARLC-GATRIIGV-DVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        74 ~vlI~G~g~~G~~-a~~l~~~~-g~~~v~~~-~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +|.|+|+|.+|.- .+...+.. ++ +++++ ++++++.+ +.+++++. .++       ++. .+.   + .+|+|+-|
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~-~i~~v~d~~~~~~~~~~~~~~~~-~~~-------~~~-~l~---~-~~D~V~I~   68 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDW-TLQGAWSPTRAKALPICESWRIP-YAD-------SLS-SLA---A-SCDAVFVH   68 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSE-EEEEEECSSCTTHHHHHHHHTCC-BCS-------SHH-HHH---T-TCSEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEEechhHhhhhhhhccccc-ccc-------cch-hhh---h-hccccccc
Confidence            5789999999964 56666654 66 66554 56666654 45667764 221       222 222   2 59999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEec
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +......+.+...+..  |+-+++.
T Consensus        69 tp~~~h~~~~~~al~~--gk~V~~E   91 (164)
T d1tlta1          69 SSTASHFDVVSTLLNA--GVHVCVD   91 (164)
T ss_dssp             SCTTHHHHHHHHHHHT--TCEEEEE
T ss_pred             ccchhccccccccccc--cceeecc
Confidence            9888778888888876  5555565

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.6  Score=31.97  Aligned_cols=99  Identities=23%  Similarity=0.287  Sum_probs=57.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCc--chHHHHHhc----C---Cc-------eEEcCCCC---CCccHHH
Q 025101           74 TVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVIS--EKFEIGKRF----G---VT-------EFVNSKNC---GDKSVSQ  133 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~--~~~~~~~~~----g---~~-------~vi~~~~~---~~~~~~~  133 (258)
                      +|.|.|-|-+|.++.+.+.... . .++++-...  +...++-++    |   ..       -+++.++-   +..+..+
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i-~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~   81 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDI-EIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCe-EEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHH
Confidence            5788899999999999887653 4 666664332  233444332    2   11       01111110   0011110


Q ss_pred             -HHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          134 -IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       134 -~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                       .+.+.   ++|+|+||+|.-.+.+.+..++..+ -+-+++....
T Consensus        82 i~W~~~---gvDiViEcTG~f~t~~~~~~hl~~g-akkViiSaP~  122 (166)
T d1gado1          82 LKWDEV---GVDVVAEATGLFLTDETARKHITAG-AKKVVMTGPS  122 (166)
T ss_dssp             GCHHHH---TCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCC
T ss_pred             CCcccc---CCCEEEEccccccCHHHHHHHhcCC-CceEEeeccc
Confidence             01111   7999999999876678888899887 6666665443

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.29  E-value=0.48  Score=32.52  Aligned_cols=99  Identities=17%  Similarity=0.180  Sum_probs=58.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHc-CCCeEEEEcC---CcchHHHHHhcC-------Cc-------eEEcCCCC---CCccHH
Q 025101           74 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDV---ISEKFEIGKRFG-------VT-------EFVNSKNC---GDKSVS  132 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~---~~~~~~~~~~~g-------~~-------~vi~~~~~---~~~~~~  132 (258)
                      +|.|.|-|-+|.++.+.+... .. .++++-.   +.+...++-++.       ..       .+++.+.-   ...+..
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~-~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~   80 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDI-EVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS   80 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCc-EEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence            578889999999999888754 45 6666632   335566664432       11       01111100   001111


Q ss_pred             H-HHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          133 Q-IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       133 ~-~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      + .+.+.   ++|+|+||+|.-.+.+.+..++..+ .+-|++.-..
T Consensus        81 ~i~W~~~---gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~  122 (166)
T d2b4ro1          81 QIPWGKC---QVDVVCESTGVFLTKELASSHLKGG-AKKVIMSAPP  122 (166)
T ss_dssp             GCCHHHH---TCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCC
T ss_pred             Hcccccc---CCCEEEEecccccchhhhhhhhccC-CCEEEEeccc
Confidence            1 01111   7999999999876678888888877 6556665443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.19  E-value=0.044  Score=38.26  Aligned_cols=31  Identities=35%  Similarity=0.327  Sum_probs=26.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  102 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~  102 (258)
                      .+++|+|+|+|.+|.-++..++.+|. ++.++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCC-ceEEE
Confidence            47899999999999999999999998 44443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.0073  Score=45.19  Aligned_cols=45  Identities=18%  Similarity=0.054  Sum_probs=32.5

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  114 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~  114 (258)
                      ...+|.+||=+|+|. |.....+++. ++.+|++++-++...+.+++
T Consensus        48 ~~~~g~~vLDlGcG~-G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~   92 (257)
T d2a14a1          48 GGLQGDTLIDIGSGP-TIYQVLAACD-SFQDITLSDFTDRNREELEK   92 (257)
T ss_dssp             TSCCEEEEEESSCTT-CCGGGTTGGG-TEEEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCC-CHhHHHHhcc-ccCcEEEecCCHHHHHHHHH
Confidence            345788899889874 5444444444 44489999999998888765

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.027  Score=42.33  Aligned_cols=45  Identities=18%  Similarity=0.035  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  114 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~  114 (258)
                      +..+|.++|-+|+|+ |...+..+...+. +|++++-++...+.+++
T Consensus        51 g~~~g~~vLDiGcG~-g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~   95 (263)
T d2g72a1          51 GEVSGRTLIDIGSGP-TVYQLLSACSHFE-DITMTDFLEVNRQELGR   95 (263)
T ss_dssp             SCSCCSEEEEETCTT-CCGGGTTGGGGCS-EEEEECSCHHHHHHHHH
T ss_pred             CCCCCcEEEEeccCC-CHHHHHHhcccCC-eEEEEeCCHHHHHHHHH
Confidence            445789999999975 4443333433444 89999999999888875

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=93.16  E-value=0.041  Score=42.73  Aligned_cols=32  Identities=28%  Similarity=0.288  Sum_probs=26.0

Q ss_pred             EEEEEccCHHHHHHHHHHH-----HcCCCeEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAEGAR-----LCGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~-----~~g~~~v~~~~~~~  106 (258)
                      -|+|+|+|+.|++++.++.     ..|. +|+++++.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence            3789999999999877763     4699 899998764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.12  E-value=0.049  Score=39.42  Aligned_cols=31  Identities=29%  Similarity=0.254  Sum_probs=27.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      -++|+|+|+.|+.++..++.+|. +|.+++..
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            47888999999999999999999 89999864

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.10  E-value=0.2  Score=33.63  Aligned_cols=69  Identities=14%  Similarity=0.262  Sum_probs=44.7

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhcC-Cc-----e-EEcCCCCCCccHHHHHHHhcCCCC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFG-VT-----E-FVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~g-~~-----~-vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      .+|.|+|+ |.+|..++.++...|. ..+..++.++.+.+. .++. +.     . .+.  .   .+..+.++     +.
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a-~Dl~~~~~~~~~~~~~~--~---~~~~~~~~-----~a   69 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA-ADLSHIETRATVKGYLG--P---EQLPDCLK-----GC   69 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH-HHHTTSSSSCEEEEEES--G---GGHHHHHT-----TC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh-HHHhhhhhhcCCCeEEc--C---CChHHHhC-----CC
Confidence            36889996 9999999999988775 577888876654333 3322 11     1 221  1   23443332     69


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |+|+-+.|.
T Consensus        70 DivVitag~   78 (144)
T d1mlda1          70 DVVVIPAGV   78 (144)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCCc
Confidence            999998885

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.03  E-value=0.057  Score=39.19  Aligned_cols=32  Identities=31%  Similarity=0.305  Sum_probs=27.2

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      |+|+|+|+.|+.++..+...|. +|.+++..++
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~-kV~lie~~~~   39 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKRGK   39 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEecCC
Confidence            6889999999998888888899 8999986543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.087  Score=37.28  Aligned_cols=85  Identities=18%  Similarity=0.122  Sum_probs=55.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .+.+|.|+|.|.+|..++++++.+|. +|++.++......       ......     .++.+.++     ..|+|.-+.
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~-------~~~~~~-----~~l~ell~-----~sDii~i~~  104 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENKLPL-------GNATQV-----QHLSDLLN-----MSDVVSLHV  104 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCCC-------TTCEEC-----SCHHHHHH-----HCSEEEECC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccccchh-------hhhhhh-----hhHHHHHh-----hccceeecc
Confidence            57899999999999999999999999 9999986543211       011111     23443333     378887765


Q ss_pred             C-Chh----hHHHHHHhhhcCCceEEEec
Q 025101          151 G-LAS----LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       151 g-~~~----~~~~~~~~l~~~~G~~v~~g  174 (258)
                      + .+.    .=...++.++++ ..+|-.+
T Consensus       105 plt~~T~~li~~~~l~~mk~~-a~lIN~a  132 (188)
T d1sc6a1         105 PENPSTKNMMGAKEISLMKPG-SLLINAS  132 (188)
T ss_dssp             CSSTTTTTCBCHHHHHHSCTT-EEEEECS
T ss_pred             cCCcchhhhccHHHHhhCCCC-CEEEEcC
Confidence            4 221    123667777776 7766655

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.91  E-value=0.062  Score=39.15  Aligned_cols=31  Identities=29%  Similarity=0.298  Sum_probs=27.7

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      |+|+|+|+.|+.++..+...|. +|.++++.+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~-~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            6788999999999999999999 899998654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=92.87  E-value=0.059  Score=40.25  Aligned_cols=32  Identities=22%  Similarity=0.113  Sum_probs=27.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      -|+|+|+|.+|+.++.-+...|. +|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            38899999999998777777898 999998754

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.86  E-value=0.063  Score=38.67  Aligned_cols=31  Identities=23%  Similarity=0.270  Sum_probs=27.0

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      |+|+|+|+.|+.++..+...|. +|.++++..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN   36 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecCC
Confidence            6788999999999999999999 899997653

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.85  E-value=0.72  Score=31.60  Aligned_cols=98  Identities=9%  Similarity=0.037  Sum_probs=51.1

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC--CC-eEEEEcCCcchHHHHHhcCCce--------EEcCCCCCCccHHHHHHHhcCC-
Q 025101           74 TVVIFGLGSIGLAVAEGARLCG--AT-RIIGVDVISEKFEIGKRFGVTE--------FVNSKNCGDKSVSQIIIDMTDG-  141 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g--~~-~v~~~~~~~~~~~~~~~~g~~~--------vi~~~~~~~~~~~~~i~~~~~~-  141 (258)
                      +|.|.|.|.+|..++++.....  .. ++.++..+....  +...|.+.        -..................... 
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSL--ISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSP   83 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEE--ECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCS
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeee--ecccccchHhhhhhhhhhhhcccccccHHHHHHHhccCC
Confidence            5788899999999988776532  21 555554432210  00000000        0000000001122222222233 


Q ss_pred             CCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       142 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ..++++||+++..........+..+ =++|...
T Consensus        84 ~~~vivd~t~~~~~~~~~~~aL~~G-~hVVTAN  115 (168)
T d1ebfa1          84 KPVILVDNTSSAYIAGFYTKFVENG-ISIATPN  115 (168)
T ss_dssp             SCEEEEECSCCHHHHTTHHHHHHTT-CEEECCC
T ss_pred             CceEEEEecCChHHHHHHHHHHHcC-CeEEecC
Confidence            6788999999988666777777776 5665443

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=92.84  E-value=0.12  Score=36.75  Aligned_cols=90  Identities=24%  Similarity=0.292  Sum_probs=58.8

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      +.++.+||-+|+|. |..+..+     . ++++++.+++..+.+++-+.. ++...-   +++     ...++.||+|+.
T Consensus        34 ~~~~~~vLDiGcG~-G~~~~~~-----~-~~~giD~s~~~~~~a~~~~~~-~~~~d~---~~l-----~~~~~~fD~I~~   97 (208)
T d1vlma_          34 LLPEGRGVEIGVGT-GRFAVPL-----K-IKIGVEPSERMAEIARKRGVF-VLKGTA---ENL-----PLKDESFDFALM   97 (208)
T ss_dssp             HCCSSCEEEETCTT-STTHHHH-----T-CCEEEESCHHHHHHHHHTTCE-EEECBT---TBC-----CSCTTCEEEEEE
T ss_pred             hCCCCeEEEECCCC-ccccccc-----c-eEEEEeCChhhcccccccccc-cccccc---ccc-----cccccccccccc
Confidence            34567899999873 5554444     2 578999999999999887653 332221   111     111237999986


Q ss_pred             ecC-----C-hhhHHHHHHhhhcCCceEEEecc
Q 025101          149 CVG-----L-ASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       149 ~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      ...     . ...++.+.+.|+|+ |.++....
T Consensus        98 ~~~l~h~~d~~~~l~~~~~~L~pg-G~l~i~~~  129 (208)
T d1vlma_          98 VTTICFVDDPERALKEAYRILKKG-GYLIVGIV  129 (208)
T ss_dssp             ESCGGGSSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             ccccccccccccchhhhhhcCCCC-ceEEEEec
Confidence            432     2 23578999999999 99887653

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.82  E-value=0.025  Score=37.46  Aligned_cols=82  Identities=22%  Similarity=0.180  Sum_probs=50.0

Q ss_pred             CEEEEEccCHHHHHHHHHHH-HcCCCeEEEE-cCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           73 STVVIFGLGSIGLAVAEGAR-LCGATRIIGV-DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~-~~g~~~v~~~-~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      .+|+|+|+|..|.+++...+ ..|+ +++++ +.++++... .=.|. .|++.+     ++.+    .....+++++-++
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~-~iv~fiDdd~~k~G~-~I~Gi-~V~~~~-----~l~~----~~~~~i~iai~~i   71 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESF-ELRGFFDVDPEKVGR-PVRGG-VIEHVD-----LLPQ----RVPGRIEIALLTV   71 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSE-EEEEEEESCTTTTTC-EETTE-EEEEGG-----GHHH----HSTTTCCEEEECS
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCc-EEEEEEeCchHhcCC-EECCE-EEecHH-----HHHH----HHhhcccEEEEeC
Confidence            37999999999997766443 4477 67775 444433211 00232 455442     2332    2233688888888


Q ss_pred             CChhhHHHHHHhhhcCCc
Q 025101          151 GLASLVQEAYACCRKGWG  168 (258)
Q Consensus       151 g~~~~~~~~~~~l~~~~G  168 (258)
                      .... .++..+.+... |
T Consensus        72 ~~~~-~~~I~d~l~~~-g   87 (126)
T d2dt5a2          72 PREA-AQKAADLLVAA-G   87 (126)
T ss_dssp             CHHH-HHHHHHHHHHH-T
T ss_pred             CHHH-HHHHHHHHHHc-C
Confidence            8766 67777777665 5

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.054  Score=41.83  Aligned_cols=31  Identities=26%  Similarity=0.357  Sum_probs=27.5

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      |+|+|+|..|+.++..++..|. +|++++.++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            7889999999999998888999 899998654

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.78  E-value=1.3  Score=33.17  Aligned_cols=100  Identities=19%  Similarity=0.203  Sum_probs=60.4

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE--cCCcchHHHHHhcCCceEEcCC------------------
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV--DVISEKFEIGKRFGVTEFVNSK------------------  124 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~--~~~~~~~~~~~~~g~~~vi~~~------------------  124 (258)
                      +...++++..|+..++|.-|.+++..++.+|.+-++++  ..++.+...++.+|+..+.-..                  
T Consensus        54 ~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~~~~~~~~~~~~~~~~~  133 (302)
T d1fcja_          54 KRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASD  133 (302)
T ss_dssp             HHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHTS
T ss_pred             HcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccccccchhhhHHHHHHhhh
Confidence            34456667776666779999999999999998433333  3344566777888875332110                  


Q ss_pred             --------CCC-C-------ccHHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhh
Q 025101          125 --------NCG-D-------KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR  164 (258)
Q Consensus       125 --------~~~-~-------~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  164 (258)
                              ... +       ..+..+|.+..++.+|.+|-++|+...+.-....++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk  189 (302)
T d1fcja_         134 PQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIK  189 (302)
T ss_dssp             TTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHH
T ss_pred             ccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeee
Confidence                    000 0       112234555555578999999987654554444443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.73  E-value=0.062  Score=39.82  Aligned_cols=34  Identities=29%  Similarity=0.427  Sum_probs=30.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      .+.+|+|+|+|++|..++..+...|.++++.+|.
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            4679999999999999999999999988988864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.72  E-value=0.19  Score=33.04  Aligned_cols=62  Identities=19%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             hhhcCCCCCCEEEEE-ccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCC
Q 025101           64 WRTANVEVGSTVVIF-GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  125 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~-G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~  125 (258)
                      .+.++++.-+.+++. ..-..-.++.++++.+|..++++...+++..+.++++|++.++++..
T Consensus        58 l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~~  120 (132)
T d1lssa_          58 LEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPEL  120 (132)
T ss_dssp             HHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHHH
T ss_pred             hhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHHH
Confidence            356677766666654 33455678888999999888999888888899999999999987643

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=92.64  E-value=0.78  Score=31.64  Aligned_cols=100  Identities=20%  Similarity=0.284  Sum_probs=56.1

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC----CCeEEEEcC--CcchHHHHHhcC-------Cc-------eEEcCCCC---CCcc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCG----ATRIIGVDV--ISEKFEIGKRFG-------VT-------EFVNSKNC---GDKS  130 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g----~~~v~~~~~--~~~~~~~~~~~g-------~~-------~vi~~~~~---~~~~  130 (258)
                      +|.|.|-|-+|.++.+.+-..+    . .|+++-.  +.+...++-++.       ..       .+++.+.-   ...+
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~-~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDI-EIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCe-EEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            5788999999999988775432    3 4555542  333444543322       11       01111100   0001


Q ss_pred             HHHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          131 VSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       131 ~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                      .. .+ .|...++|+|+||+|.-...+.+..++..+ -+-+++..+.
T Consensus        82 p~-~i-~W~~~gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSAP~  125 (173)
T d1obfo1          82 PA-QL-PWGALKVDVVLECTGFFTTKEKAGAHIKGG-AKKVIISAPG  125 (173)
T ss_dssp             GG-GS-CTTTTTCSEEEECSSSCCSHHHHHHHHHHT-CSEEEESSCC
T ss_pred             HH-HC-cccccccceEEEecccccCHHHHHHHhccC-CcceEEecCC
Confidence            00 01 111228999999999766578888899887 6666666443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.62  E-value=0.076  Score=41.13  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=26.6

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcc
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISE  107 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~  107 (258)
                      ++|+|+|+|+.|++++..++..|. .+|++++++++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            589999999999988765554442 28999988753

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=92.60  E-value=0.22  Score=36.92  Aligned_cols=98  Identities=17%  Similarity=0.134  Sum_probs=60.8

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHH----hcCC-ceE-EcCCCCCCccHHHHHHH
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGK----RFGV-TEF-VNSKNCGDKSVSQIIID  137 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~----~~g~-~~v-i~~~~~~~~~~~~~i~~  137 (258)
                      ....+....+||-+|+|. |..+..+++.. +. ++++++. ++..+.++    +.|. +.+ +...+     +.+   .
T Consensus        75 ~~~d~~~~~~vlDvG~G~-G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d-----~~~---~  143 (256)
T d1qzza2          75 DAYDWSAVRHVLDVGGGN-GGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGLADRVTVAEGD-----FFK---P  143 (256)
T ss_dssp             HTSCCTTCCEEEEETCTT-SHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC-----TTS---C
T ss_pred             hcCCCccCCEEEEECCCC-CHHHHHHHHhhcCc-EEEEecC-hHHHHHHHHHHhhcCCcceeeeeeee-----ccc---c
Confidence            344566778999999874 88999999976 56 8898885 55444443    3442 222 11111     110   1


Q ss_pred             hcCCCCCEEEEec-----CCh---hhHHHHHHhhhcCCceEEEecc
Q 025101          138 MTDGGADYCFECV-----GLA---SLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       138 ~~~~~~d~v~d~~-----g~~---~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                       .+.++|+++-..     +.+   ..+..+.+.|+|+ |+++++..
T Consensus       144 -~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg-G~llI~d~  187 (256)
T d1qzza2         144 -LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG-GRLLVLDR  187 (256)
T ss_dssp             -CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             -ccccchhhhccccccccCcHHHHHHHHHHHhhcCCc-ceeEEEEe
Confidence             122688887422     212   2477889999999 99998764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.55  E-value=0.13  Score=36.73  Aligned_cols=69  Identities=16%  Similarity=0.256  Sum_probs=42.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEec
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  150 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~  150 (258)
                      ++|||+|+ |-+|..+++.+...|.. +|++..|++...       ...+ ....   .++.+ +.+...+.+|.||.|+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-------~~~~-~~~~---~d~~~-~~~~~~~~~d~vi~~~   70 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-------HPRL-DNPV---GPLAE-LLPQLDGSIDTAFCCL   70 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-------CTTE-ECCB---SCHHH-HGGGCCSCCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-------cccc-cccc---cchhh-hhhccccchheeeeee
Confidence            78999997 99999999888777752 566666543211       0111 1111   23333 2233333789999998


Q ss_pred             CCh
Q 025101          151 GLA  153 (258)
Q Consensus       151 g~~  153 (258)
                      |..
T Consensus        71 g~~   73 (212)
T d2a35a1          71 GTT   73 (212)
T ss_dssp             CCC
T ss_pred             eee
Confidence            763

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=92.40  E-value=1  Score=30.83  Aligned_cols=99  Identities=21%  Similarity=0.294  Sum_probs=58.5

Q ss_pred             EEEEEccCHHHHHHHHHHHHc-CCCeEEEEcC---CcchHHHHHhcC-------Cc-------eEEcCCCC---CCccHH
Q 025101           74 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDV---ISEKFEIGKRFG-------VT-------EFVNSKNC---GDKSVS  132 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~---~~~~~~~~~~~g-------~~-------~vi~~~~~---~~~~~~  132 (258)
                      +|.|.|-|-+|.++.+.+-.. .. +++++-.   +.+...++-++.       .+       -+++.+.-   ...+. 
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~-~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p-   80 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKV-DIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP-   80 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSS-EEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG-
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCc-EEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCCh-
Confidence            678999999999999877654 45 6776633   234555654432       11       01111100   00010 


Q ss_pred             HHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          133 QIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       133 ~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      +.+ .|..-++|+|+||+|.-...+.+..++..+ -+-+++...
T Consensus        81 ~~i-~W~~~~vDiViEcTG~f~~~~~~~~hl~~g-akkViiSaP  122 (169)
T d1u8fo1          81 SKI-KWGDAGAEYVVESTGVFTTMEKAGAHLQGG-AKRVIISAP  122 (169)
T ss_dssp             GGC-CTTTTTCCEEEECSSSCCSHHHHGGGGGGT-CSEEEESSC
T ss_pred             hhC-CccccCCCEEEEecceeccHHHHHHHHhcC-CceEeeccc
Confidence            111 122228999999999866678888888887 666666543

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.27  E-value=0.55  Score=36.96  Aligned_cols=55  Identities=25%  Similarity=0.184  Sum_probs=39.9

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEc---CCcchHHHHHhcCCceEEcC
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD---VISEKFEIGKRFGVTEFVNS  123 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~---~~~~~~~~~~~~g~~~vi~~  123 (258)
                      ++++|..|+-..+|+.|.+++..++.+|. +++++.   .+++|.+.++.+|++.+...
T Consensus       140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGi-k~~Iv~P~~~~~~K~~~ira~GAeVi~~~  197 (382)
T d1wkva1         140 RVEKGSLVADATSSNFGVALSAVARLYGY-RARVYLPGAAEEFGKLLPRLLGAQVIVDP  197 (382)
T ss_dssp             TSCTTCEEEEECCHHHHHHHHHHHHHTTC-EEEEEEETTSCHHHHHHHHHTTCEEEEET
T ss_pred             ccCCCCEEEEeCCcHHHHHHHHHHHHcCC-CEEEEeeccccccccccccccCcceeecC
Confidence            45677665444569999999999999999 655553   24567778899998755443

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.22  E-value=0.099  Score=37.12  Aligned_cols=39  Identities=18%  Similarity=0.287  Sum_probs=32.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  114 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~  114 (258)
                      +|.|+|.|-+|+.++.++. .|. +|+++|.++++.+.++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHHH-CCC-cEEEEECCHHHHHHHhh
Confidence            6889999999998776664 698 99999999998887754

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.58  Score=35.90  Aligned_cols=102  Identities=17%  Similarity=0.127  Sum_probs=61.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEc---CCcchHHHHHhcCCceEEcCCCCC-------------------
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD---VISEKFEIGKRFGVTEFVNSKNCG-------------------  127 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~---~~~~~~~~~~~~g~~~vi~~~~~~-------------------  127 (258)
                      .+...|+...+|..|.+++..++..|. +++++.   .+.+|.+.++.+|+..++...+..                   
T Consensus        73 ~~~~~vv~assGN~g~a~A~~a~~~g~-~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (331)
T d1tdja1          73 QKAHGVITASAGNHAQGVAFSSARLGV-KALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVP  151 (331)
T ss_dssp             SCSSSCEEEECSSSHHHHHHHHHHTTC-CEEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHHHHCCEECC
T ss_pred             CCCCeeeecccchhHHHHHHhhccccc-cceeeccccchhHHHHHHHhcCCEEEEcCcccccchhhhhhhhhcCCCcccc
Confidence            344556665678899999999999999 555542   244567788889986443322100                   


Q ss_pred             ---Ccc-------HHHHHHHhcCCCCCEEEEecCChhhHH---HHHHhhhcCCceEEEec
Q 025101          128 ---DKS-------VSQIIIDMTDGGADYCFECVGLASLVQ---EAYACCRKGWGKTIVLG  174 (258)
Q Consensus       128 ---~~~-------~~~~i~~~~~~~~d~v~d~~g~~~~~~---~~~~~l~~~~G~~v~~g  174 (258)
                         ...       ...++.+.. +.+|.||-++|+..++.   ..++.+.+. .+++.+-
T Consensus       152 ~~~~~~~~~g~~t~~~Ei~~q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~-~~ii~ve  209 (331)
T d1tdja1         152 PFDHPMVIAGQGTLALELLQQD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQ-IKVIAVE  209 (331)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHC-TTCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred             ccCChHHhhhhhhHHHHHHHhc-CCCCEEEEeCChhHHHHHHHHHHHHhCCC-cEEEEec
Confidence               000       112222222 26999999998765444   444444565 6776664

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.13  E-value=0.056  Score=39.37  Aligned_cols=34  Identities=12%  Similarity=0.154  Sum_probs=27.6

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcC-------CCeEEEEcCCcc
Q 025101           73 STVVIFGLGSIGLAVAEGARLCG-------ATRIIGVDVISE  107 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g-------~~~v~~~~~~~~  107 (258)
                      .+|+|+|+|+.|++++..+...|       + +|.+.+..+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~-~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCC-ceEEEecCCC
Confidence            47999999999999988777666       4 7888887653

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.10  E-value=0.069  Score=36.07  Aligned_cols=91  Identities=15%  Similarity=0.013  Sum_probs=51.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      -+|.|+|+ |-+|+-+++++..++  ..++..+.++...-+.+...+.+..+       .+..    ...-.+.|++|-+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~-------~~~~----~~~~~~~d~vf~a   71 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRV-------GDVD----SFDFSSVGLAFFA   71 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEEC-------EEGG----GCCGGGCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchh-------ccch----hhhhccceEEEec
Confidence            47899997 999999999996432  33666655443222111111111111       0110    0000169999999


Q ss_pred             cCChhhHHHHHHhhhcCCceEEEecc
Q 025101          150 VGLASLVQEAYACCRKGWGKTIVLGV  175 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~~v~~g~  175 (258)
                      .+...+....-.....+ .+++..+.
T Consensus        72 ~p~~~s~~~~~~~~~~g-~~VID~Ss   96 (144)
T d2hjsa1          72 AAAEVSRAHAERARAAG-CSVIDLSG   96 (144)
T ss_dssp             SCHHHHHHHHHHHHHTT-CEEEETTC
T ss_pred             CCcchhhhhccccccCC-ceEEeech
Confidence            98877455555556666 77776653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=92.05  E-value=0.089  Score=39.93  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=26.1

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .|+|+|+|.+|++++.-+...|.++|.+++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            58999999999987776666787569999865

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.05  E-value=0.096  Score=38.01  Aligned_cols=34  Identities=15%  Similarity=0.119  Sum_probs=26.9

Q ss_pred             CEEEEEccCHHHHHHHHHHHH--cCCCeEEEEcCCcc
Q 025101           73 STVVIFGLGSIGLAVAEGARL--CGATRIIGVDVISE  107 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~--~g~~~v~~~~~~~~  107 (258)
                      .+|+|+|+|+.|+.+++.++.  .|. +|+++++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCC
Confidence            379999999999998876654  467 8999987653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.04  E-value=0.086  Score=40.16  Aligned_cols=32  Identities=31%  Similarity=0.471  Sum_probs=27.5

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      =|+|+|+|..|+.++.-+...|+ +|+++++.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGA-KVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            37899999999998888888999 899998654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.093  Score=37.74  Aligned_cols=30  Identities=40%  Similarity=0.382  Sum_probs=26.7

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      ++|+|+|+.|+.++..+..+|. +|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA-RAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            6788999999999999999999 89998754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.98  E-value=0.085  Score=37.27  Aligned_cols=33  Identities=15%  Similarity=0.079  Sum_probs=27.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      ...|+|+|+|+.|+.++..+...|. +|+++++.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCC-cEEEEEee
Confidence            3578999999999998888888899 88888744

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.97  E-value=0.086  Score=37.94  Aligned_cols=30  Identities=20%  Similarity=0.302  Sum_probs=26.5

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      |+|+|+|+-|+.++..+...|. +|.+++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            6788999999999988888999 89999864

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.91  E-value=0.35  Score=34.46  Aligned_cols=94  Identities=15%  Similarity=0.174  Sum_probs=63.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCce--EEcCCCCCCccHHHHHHHhcCC-CCC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE--FVNSKNCGDKSVSQIIIDMTDG-GAD  144 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~--vi~~~~~~~~~~~~~i~~~~~~-~~d  144 (258)
                      +..||-+|+|. |..++.+|+...-..+++++.++.....+    ++.+..+  ++..+.   .++.    +..+. .+|
T Consensus        32 ~plvLdIGcG~-G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da---~~l~----~~~~~~~~~  103 (204)
T d1yzha1          32 NPIHVEVGSGK-GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG---SDLT----DYFEDGEID  103 (204)
T ss_dssp             CCEEEEESCTT-SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS---SCGG----GTSCTTCCS
T ss_pred             CCeEEEEeccC-CHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCH---HHHh----hhccCCcee
Confidence            45677789985 89999999987444899999998776654    4456543  333332   2332    22333 788


Q ss_pred             EEEEecCC--------------hhhHHHHHHhhhcCCceEEEec
Q 025101          145 YCFECVGL--------------ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       145 ~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .|+-....              +..++.+.+.|+|+ |.+.+..
T Consensus       104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg-G~l~i~T  146 (204)
T d1yzha1         104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN-GEIHFKT  146 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCC-cEEEEEE
Confidence            88765553              24488889999999 9987553

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.88  E-value=0.094  Score=39.27  Aligned_cols=30  Identities=30%  Similarity=0.503  Sum_probs=26.2

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      |+|+|+|.+|+.++.-+...|. +|+++++.
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            7889999999998887777899 89999865

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.3  Score=36.57  Aligned_cols=71  Identities=18%  Similarity=0.218  Sum_probs=41.9

Q ss_pred             EEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC--CcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCEEEEec
Q 025101           75 VVIFGL-GSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV  150 (258)
Q Consensus        75 vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~--~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~v~d~~  150 (258)
                      |||+|+ |-+|..++..+...|...|+++++  ...+.....+......++.     ++....+.....- ..+.++-+.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~a   76 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDK-----EDFLIQIMAGEEFGDVEAIFHEG   76 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEH-----HHHHHHHHTTCCCSSCCEEEECC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccc-----hHHHHHHhhhhcccchhhhhhhc
Confidence            789986 999999888888779757888863  2233444444444334333     2233333332222 567777544

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=91.69  E-value=0.79  Score=31.59  Aligned_cols=100  Identities=18%  Similarity=0.194  Sum_probs=53.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCC--eEEEEcCC--cchHHHHHhc----C---Cc-------e-EEcCCCC---CCccH
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI--SEKFEIGKRF----G---VT-------E-FVNSKNC---GDKSV  131 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~--~v~~~~~~--~~~~~~~~~~----g---~~-------~-vi~~~~~---~~~~~  131 (258)
                      +|.|.|-|-+|.++.+.+....-.  .|+++-..  .+...++-++    |   .+       . ++|.+.-   ...+.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~p   81 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNP   81 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSCG
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCCh
Confidence            578899999999999877654321  45555322  2334444332    2   11       0 1111100   00111


Q ss_pred             HHHHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          132 SQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       132 ~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      . .+ .|..-++|+|+||+|.-...+.+..++..+ -+-+++...
T Consensus        82 ~-~i-~W~~~gvDiViEcTG~f~~~~~~~~hl~~G-akkViiSAP  123 (172)
T d1rm4a1          82 V-NL-PWGDMGIDLVIEGTGVFVDRDGAGKHLQAG-AKKVLITAP  123 (172)
T ss_dssp             G-GS-CHHHHTCCEEEECSSSCCBHHHHHHHHHTT-CSCEEESSC
T ss_pred             H-HC-ChhhcCCCEEEecCceEccHHHHHHHHhcC-CceEEeecc
Confidence            1 11 111117999999999866577888888877 644445433

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.63  E-value=0.088  Score=38.33  Aligned_cols=30  Identities=33%  Similarity=0.507  Sum_probs=26.6

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      |+|+|+|+.|+.++..+...|. +|.+++..
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~-kV~viE~~   35 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDK-KVMVLDFV   35 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCC-CEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            7889999999999999998999 89999854

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.63  E-value=0.24  Score=33.53  Aligned_cols=39  Identities=18%  Similarity=0.193  Sum_probs=32.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  109 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~  109 (258)
                      |..+|.|+|+|.+|..++.++...+...+..++..+++.
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~   40 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMP   40 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcc
Confidence            456899999999999888888888887888888877664

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.49  E-value=0.2  Score=39.12  Aligned_cols=32  Identities=25%  Similarity=0.303  Sum_probs=25.4

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      .+|||+|+ |-+|..++..+...|...|+++++
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            36999986 999999998888889855666654

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.49  E-value=0.29  Score=35.91  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=29.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHH-HcCCCeEEEEcCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVI  105 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~-~~g~~~v~~~~~~  105 (258)
                      -+|.+|+|.|.|.+|..+++++. ..|+ +|+++..+
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~-kvv~vsD~   65 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGM-KVVAVSDS   65 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEECS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCc-ceeecccc
Confidence            37899999999999999998775 5788 88887644

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=91.48  E-value=1.1  Score=34.44  Aligned_cols=98  Identities=16%  Similarity=0.136  Sum_probs=62.9

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHH-HHcCCCeEEEEcCCcchHH-HHHhc----CCceEEcCCCCCCccHHHHHHHhcCCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDVISEKFE-IGKRF----GVTEFVNSKNCGDKSVSQIIIDMTDGG  142 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~-~~~g~~~v~~~~~~~~~~~-~~~~~----g~~~vi~~~~~~~~~~~~~i~~~~~~~  142 (258)
                      .+...++.|+|+|..+..-++.. ..++.++|.+.++++++.+ +++++    |.. +.-.     .+..+.++     +
T Consensus       125 ~~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~-v~~~-----~s~~eav~-----~  193 (340)
T d1x7da_         125 RPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLT-IRRA-----SSVAEAVK-----G  193 (340)
T ss_dssp             CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCE-EEEC-----SSHHHHHT-----T
T ss_pred             ccCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCC-ceec-----CCHHHHHh-----c
Confidence            34567899999998887766644 5778889999999987755 44443    332 2222     23444443     6


Q ss_pred             CCEEEEecCChhh-HHHHHHhhhcCCceEEEecccCC
Q 025101          143 ADYCFECVGLASL-VQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       143 ~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      .|+|+-|+.++.. --.--+.++|+ -++..+|....
T Consensus       194 ADIi~t~Tas~s~~Pv~~~~~l~pG-~hI~aiGs~~p  229 (340)
T d1x7da_         194 VDIITTVTADKAYATIITPDMLEPG-MHLNAVGGDCP  229 (340)
T ss_dssp             CSEEEECCCCSSEEEEECGGGCCTT-CEEEECSCCBT
T ss_pred             CCceeeccccCCCCcccchhhcCCC-CEEeecccchh
Confidence            8999987754310 00123578888 88888886543

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.38  E-value=0.94  Score=34.01  Aligned_cols=46  Identities=20%  Similarity=0.268  Sum_probs=33.2

Q ss_pred             EEE-ccCHHHHHHHHHHHHcCCCeEEEEc--CCcchHHHHHhcCCceEE
Q 025101           76 VIF-GLGSIGLAVAEGARLCGATRIIGVD--VISEKFEIGKRFGVTEFV  121 (258)
Q Consensus        76 lI~-G~g~~G~~a~~l~~~~g~~~v~~~~--~~~~~~~~~~~~g~~~vi  121 (258)
                      +|. .+|+.|.+++..++.+|..-++.+.  .++.|.+.++.+|+..++
T Consensus        58 vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~  106 (293)
T d1o58a_          58 IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVL  106 (293)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             eEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccccCCcEEEE
Confidence            444 5699999999999999984333332  345678888899986443

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.30  E-value=0.12  Score=39.88  Aligned_cols=34  Identities=29%  Similarity=0.258  Sum_probs=28.8

Q ss_pred             CEE-EEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025101           73 STV-VIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  107 (258)
Q Consensus        73 ~~v-lI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~  107 (258)
                      ++| ||+|+ |-+|..++..+...|+ +|+++++..+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCCc
Confidence            357 99987 9999999998888899 9999998653

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.24  E-value=0.12  Score=35.17  Aligned_cols=92  Identities=14%  Similarity=0.085  Sum_probs=54.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCC--CeEEEEcCCcchHHHHHhcCCc-eEEcCCCCCCccHHHHHHHhcCCCCCEEE
Q 025101           72 GSTVVIFGL-GSIGLAVAEGARLCGA--TRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCF  147 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~l~~~~g~--~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~~~d~v~  147 (258)
                      |-+|.|+|+ |-+|.-+++++..+..  .++..++.+....+........ ...+..+   .++         ...|++|
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~---~~~---------~~~d~~f   68 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTE---TAF---------EGVDIAL   68 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCT---TTT---------TTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccch---hhh---------hhhhhhh
Confidence            447999997 9999999999987753  2444444322111111111111 1111111   111         1689999


Q ss_pred             EecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          148 ECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       148 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      -+.+...+..........+ -+++..+..
T Consensus        69 ~~~~~~~s~~~~~~~~~~~-~~VIDlSsd   96 (154)
T d2gz1a1          69 FSAGSSTSAKYAPYAVKAG-VVVVDNTSY   96 (154)
T ss_dssp             ECSCHHHHHHHHHHHHHTT-CEEEECSST
T ss_pred             hccCccchhhHHhhhcccc-ceehhcChh
Confidence            9999877666666677777 888888743

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.14  E-value=0.14  Score=35.88  Aligned_cols=92  Identities=9%  Similarity=0.071  Sum_probs=54.5

Q ss_pred             CCCCCEEEEEc--cCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHhc
Q 025101           69 VEVGSTVVIFG--LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMT  139 (258)
Q Consensus        69 ~~~g~~vlI~G--~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~  139 (258)
                      .-.|.+||=..  .|++|+-   .+. .|+.+|+.++.+++..+.+++    ++..   .++.      .+..+.+....
T Consensus        39 ~~~~~~vLDlfaGsG~~g~e---a~s-rGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~------~D~~~~l~~~~  108 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIE---AVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRK------MDANRALEQFY  108 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHH---HHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE------SCHHHHHHHHH
T ss_pred             hcCCCEEEEcccccccccce---eee-cchhHHHHHHHHHHHHHHHHHHhhhhhccccccccc------ccchhhhhhhc
Confidence            44688888774  4666653   333 688789999999988877654    4532   2332      34555555432


Q ss_pred             -CC-CCCEEE-Eec-CC---hhhHHHHHH--hhhcCCceEE
Q 025101          140 -DG-GADYCF-ECV-GL---ASLVQEAYA--CCRKGWGKTI  171 (258)
Q Consensus       140 -~~-~~d~v~-d~~-g~---~~~~~~~~~--~l~~~~G~~v  171 (258)
                       .+ .||+|| |.- +.   ...++.+..  .+.++ |.++
T Consensus       109 ~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~-giIi  148 (182)
T d2fhpa1         109 EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNE-AVIV  148 (182)
T ss_dssp             HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEE-EEEE
T ss_pred             ccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCC-EEEE
Confidence             23 799998 432 11   222444433  36776 7654

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=90.91  E-value=0.028  Score=38.92  Aligned_cols=90  Identities=20%  Similarity=0.258  Sum_probs=52.3

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhc----CCc----eEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRF----GVT----EFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~----g~~----~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      +|.|.|+ |-+|+++++++... ++ ++++....+.....-++.    |..    .+.+..+           .. ...+
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~-~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~-----------~~-~~~~   72 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLD-----------AV-KDDF   72 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCST-----------TT-TTSC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecccchhccchhhhhhccccCCceeeccHH-----------HH-hccc
Confidence            6888897 99999999998865 55 554433222111111111    100    1111111           11 1268


Q ss_pred             CEEEEecCChhhHHHHHHhhhcCCceEEEecccCC
Q 025101          144 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  178 (258)
Q Consensus       144 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  178 (258)
                      |+++|.+.... ....++..... |.=+.+|+.+.
T Consensus        73 DViIDFs~p~~-~~~~~~~a~~~-~~~~ViGTTG~  105 (162)
T d1diha1          73 DVFIDFTRPEG-TLNHLAFCRQH-GKGMVIGTTGF  105 (162)
T ss_dssp             SEEEECSCHHH-HHHHHHHHHHT-TCEEEECCCCC
T ss_pred             ceEEEeccHHH-HHHHHHHHHhc-cceeEEecCCC
Confidence            99999877655 66677777777 77777887654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.87  E-value=0.12  Score=39.68  Aligned_cols=32  Identities=34%  Similarity=0.527  Sum_probs=27.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      -|+|+|+|..|+.++.-+...|+ +|++++..+
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGA-NVILVDKAP   52 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            48899999999998888888899 899997654

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=90.86  E-value=0.62  Score=32.08  Aligned_cols=100  Identities=19%  Similarity=0.282  Sum_probs=55.4

Q ss_pred             EEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCC--cchHHHHHhcC-------Cc-------eEEcCCCC---CCccHHH
Q 025101           74 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDVI--SEKFEIGKRFG-------VT-------EFVNSKNC---GDKSVSQ  133 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~--~~~~~~~~~~g-------~~-------~vi~~~~~---~~~~~~~  133 (258)
                      +|.|.|-|-+|.++.+.+-.. .. +++++-..  .+...++-++.       ..       -+++.+..   ...+..+
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~-~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~   81 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDI-EVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCc-EEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHH
Confidence            578889999999998877644 34 66666322  23344443321       00       01111000   0011110


Q ss_pred             HHHHhcCCCCCEEEEecCChhhHHHHHHhhhcCCceEEEecccC
Q 025101          134 IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       134 ~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                       + .|...++|+|+||+|.-.+.+.+..++..+ -+-+++....
T Consensus        82 -i-~W~~~~vDiViEcTG~f~t~~~~~~hl~~g-akkViiSap~  122 (171)
T d3cmco1          82 -L-AWGEIGVDIVVESTGRFTKREDAAKHLEAG-AKKVIISAPA  122 (171)
T ss_dssp             -C-CTGGGTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred             -c-cccccCCcEEEEecCccCCHHHHHHHHhCC-CceEEEeccc
Confidence             0 111127999999999877688888888876 6555555333

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=90.75  E-value=0.12  Score=39.61  Aligned_cols=31  Identities=45%  Similarity=0.592  Sum_probs=27.1

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      |+|+|+|..|+.++.-+...|+ +|+++++.+
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~-~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8899999999998888888899 899998654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.71  E-value=1.7  Score=30.03  Aligned_cols=104  Identities=18%  Similarity=0.217  Sum_probs=65.2

Q ss_pred             hhcCCCCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--eEEcCCCCCCccHHHHHHHhcCC
Q 025101           65 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDG  141 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~  141 (258)
                      ....+++|..++ -++ |+=|+. ..+++. +. +|+++++.++..+.+++.-..  .++...-   .++.+.+....-+
T Consensus        12 ~~l~~~~g~~~v-D~T~G~GGhs-~~iL~~-~~-~viaiD~D~~ai~~a~~~~~~~~~~~~~~f---~~~~~~l~~~~~~   84 (182)
T d1wg8a2          12 DLLAVRPGGVYV-DATLGGAGHA-RGILER-GG-RVIGLDQDPEAVARAKGLHLPGLTVVQGNF---RHLKRHLAALGVE   84 (182)
T ss_dssp             HHHTCCTTCEEE-ETTCTTSHHH-HHHHHT-TC-EEEEEESCHHHHHHHHHTCCTTEEEEESCG---GGHHHHHHHTTCS
T ss_pred             HhcCCCCCCEEE-EeCCCCcHHH-HHHhcc-cC-cEEEEhhhhhHHHHHhhccccceeEeehHH---HHHHHHHHHcCCC
Confidence            334677888754 443 443553 344443 55 999999999988888764322  3444444   5566655554333


Q ss_pred             CCCEEE-EecCChh--------------hHHHHHHhhhcCCceEEEeccc
Q 025101          142 GADYCF-ECVGLAS--------------LVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       142 ~~d~v~-d~~g~~~--------------~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      .+|.|+ |.--+..              .+....+.+.++ |+++.+...
T Consensus        85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~g-g~~~ii~fh  133 (182)
T d1wg8a2          85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG-GRLVVIAFH  133 (182)
T ss_dssp             CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE-EEEEEEECS
T ss_pred             ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCC-CeEEEEecc
Confidence            788876 5422211              377888899998 999877643

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=90.70  E-value=0.13  Score=38.67  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=26.2

Q ss_pred             EEEEEccCHHHHHHHH-HHHHcCCCeEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAE-GARLCGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~-l~~~~g~~~v~~~~~~~  106 (258)
                      -|+|+|+|+.|+.++. +++..|. +|.++++.+
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   67 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence            3889999999998765 5666799 999999765

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.58  E-value=0.26  Score=33.33  Aligned_cols=46  Identities=20%  Similarity=0.192  Sum_probs=37.0

Q ss_pred             hhhhhhhhhcCCCCCCEEEEE--ccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           58 TGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        58 ta~~~l~~~~~~~~g~~vlI~--G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      |....+  ..+..+++.++|+  |+|-+|+-+++.+..+|. +|..+++.+
T Consensus        27 t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          27 TPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             CHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            455543  3556778888887  678999999999999999 999998765

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=90.47  E-value=0.21  Score=37.37  Aligned_cols=62  Identities=23%  Similarity=0.439  Sum_probs=37.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      .+|||+|+ |-+|..++..+...|  .++++++.....          ..|..+  .+.+.+.+++.   ++|+||.+.+
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g--~~v~~~~~~~~~----------~~Dl~~--~~~~~~~i~~~---~~D~Vih~Aa   63 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG--NLIALDVHSKEF----------CGDFSN--PKGVAETVRKL---RPDVIVNAAA   63 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS--EEEEECTTCSSS----------CCCTTC--HHHHHHHHHHH---CCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC--CEEEEECCCccc----------cCcCCC--HHHHHHHHHHc---CCCEEEEecc
Confidence            36999987 999999988777666  456555443221          112222  02222233322   7899999876

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.37  E-value=0.18  Score=38.93  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=29.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           71 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        71 ~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      .-+++||+|+ |-+|..++..+...|. +|+++++
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            4578999986 9999999999999999 9999975

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=90.33  E-value=0.16  Score=37.56  Aligned_cols=30  Identities=30%  Similarity=0.374  Sum_probs=26.8

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      ++|+|+|+.|+.++..+...|. +|.++++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~-~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNA-KVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            6788999999999999999999 89999864

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.15  E-value=0.4  Score=36.31  Aligned_cols=54  Identities=19%  Similarity=0.124  Sum_probs=33.9

Q ss_pred             hhcCCCCCCEEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHH----HhcCCce
Q 025101           65 RTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIG----KRFGVTE  119 (258)
Q Consensus        65 ~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~----~~~g~~~  119 (258)
                      ....+++|++||=..+++=| =+++++..+ +-.+|++++.+++|.+.+    +++|...
T Consensus        88 ~~L~~~~g~~vLD~cAapGg-Kt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~  146 (293)
T d2b9ea1          88 MLLDPPPGSHVIDACAAPGN-KTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC  146 (293)
T ss_dssp             HHHCCCTTCEEEESSCTTCH-HHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             cccCCCccceEEecccchhh-HHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc
Confidence            34577899998877543312 223333322 233899999999987665    4578654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=90.11  E-value=0.51  Score=32.53  Aligned_cols=74  Identities=16%  Similarity=0.330  Sum_probs=44.8

Q ss_pred             CCCEEEEEccCHHHHHH---HHHHHH--cCCCeEEEEcCCcchHHHH--------HhcCCc-eEEcCCCCCCccHHHHHH
Q 025101           71 VGSTVVIFGLGSIGLAV---AEGARL--CGATRIIGVDVISEKFEIG--------KRFGVT-EFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a---~~l~~~--~g~~~v~~~~~~~~~~~~~--------~~~g~~-~vi~~~~~~~~~~~~~i~  136 (258)
                      |+.+|.|+|+|.+|...   ..+++.  +....++.++.++++.+..        ..++.. ++....     +..+.+.
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~t-----d~~eaL~   75 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTM-----NLDDVII   75 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEES-----CHHHHHT
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeC-----Chhhccc
Confidence            45689999999888542   223432  2223889999998876532        224433 333222     3333332


Q ss_pred             HhcCCCCCEEEEecCChh
Q 025101          137 DMTDGGADYCFECVGLAS  154 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~~~  154 (258)
                           +.|+|+.+.+...
T Consensus        76 -----dad~Vv~~~~~g~   88 (171)
T d1obba1          76 -----DADFVINTAMVGG   88 (171)
T ss_dssp             -----TCSEEEECCCTTH
T ss_pred             -----CCCeEeeeccccc
Confidence                 7999999987644

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.97  E-value=1.5  Score=29.26  Aligned_cols=42  Identities=24%  Similarity=0.251  Sum_probs=28.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhcC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFG  116 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~~~g  116 (258)
                      ++|-++|.|.+|...+.-+...|. .+ +..++.++.. ..++.+
T Consensus         1 ekIg~IGlG~MG~~ma~~L~~~g~-~~-~~~~~~~~~~~~~~~~~   43 (156)
T d2cvza2           1 EKVAFIGLGAMGYPMAGHLARRFP-TL-VWNRTFEKALRHQEEFG   43 (156)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSC-EE-EECSSTHHHHHHHHHHC
T ss_pred             CeEEEEeHHHHHHHHHHHHHhCCC-EE-EEeCCHHHHHHHHHHcC
Confidence            468899999999887777766665 44 5566665554 444443

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.96  E-value=0.58  Score=31.34  Aligned_cols=89  Identities=17%  Similarity=0.147  Sum_probs=47.5

Q ss_pred             EEEEEcc-CHHHHHHHHH-HHHc--CCCeEEEEcCCcchHHHHHhcC-CceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           74 TVVIFGL-GSIGLAVAEG-ARLC--GATRIIGVDVISEKFEIGKRFG-VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l-~~~~--g~~~v~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      +|.|+|+ |-+|+-++++ +.+.  -..+++...++..........+ ...+.+..+     .. .+.     ++|++|-
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~-----~~-~~~-----~~DivF~   71 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFD-----LE-ALK-----ALDIIVT   71 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTC-----HH-HHH-----TCSEEEE
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccc-----hh-hhh-----cCcEEEE
Confidence            6889997 9999999974 4432  3336666654433221111111 111111111     11 111     7999999


Q ss_pred             ecCChhhHHHHHHhhhcCCc---eEEEecc
Q 025101          149 CVGLASLVQEAYACCRKGWG---KTIVLGV  175 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G---~~v~~g~  175 (258)
                      |++... .......+... |   .++..+.
T Consensus        72 a~~~~~-s~~~~~~~~~~-g~~~~VID~Ss   99 (146)
T d1t4ba1          72 CQGGDY-TNEIYPKLRES-GWQGYWIDAAS   99 (146)
T ss_dssp             CSCHHH-HHHHHHHHHHT-TCCCEEEECSS
T ss_pred             ecCchH-HHHhhHHHHhc-CCCeecccCCc
Confidence            999877 44444444444 4   3565553

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=89.87  E-value=0.16  Score=39.04  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=26.9

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      |+|+|+|..|+.++--|...|+ +|++++..+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGL-STIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            7899999999998888888899 899997654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.77  E-value=1.4  Score=33.40  Aligned_cols=102  Identities=16%  Similarity=0.108  Sum_probs=59.8

Q ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCce-EEcCCCCCCccHHHHHHHhc-CC
Q 025101           68 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-FVNSKNCGDKSVSQIIIDMT-DG  141 (258)
Q Consensus        68 ~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~-vi~~~~~~~~~~~~~i~~~~-~~  141 (258)
                      ...++.+||=..+|. |...+.+++ .|+ +|+.++.++...+.+++    .|... -+..-.   .+..+.+++.. .+
T Consensus       129 ~~~~~~rVLdlf~~t-G~~sl~aa~-~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~---~D~~~~l~~~~~~~  202 (309)
T d2igta1         129 TADRPLKVLNLFGYT-GVASLVAAA-AGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC---EDAMKFIQREERRG  202 (309)
T ss_dssp             HSSSCCEEEEETCTT-CHHHHHHHH-TTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC---SCHHHHHHHHHHHT
T ss_pred             hccCCCeEEEecCCC-cHHHHHHHh-CCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEe---CCHHHhHHHHhhcC
Confidence            345788999885532 333444443 588 89999999998888865    23221 111112   45666665443 23


Q ss_pred             -CCCEEE-Eec----CC-----------hhhHHHHHHhhhcCCceEEEeccc
Q 025101          142 -GADYCF-ECV----GL-----------ASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       142 -~~d~v~-d~~----g~-----------~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                       .||+|| |--    +.           ...+..+..++.++ |.++++...
T Consensus       203 ~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~-g~~ll~t~~  253 (309)
T d2igta1         203 STYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK-ALGLVLTAY  253 (309)
T ss_dssp             CCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT-CCEEEEEEC
T ss_pred             CCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCC-CCEEEEecC
Confidence             799997 411    11           11234566678888 876666543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.67  E-value=0.19  Score=39.68  Aligned_cols=32  Identities=31%  Similarity=0.403  Sum_probs=24.5

Q ss_pred             EEEEEccCHHHHHHHHHHHH------cCCCeEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAEGARL------CGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~------~g~~~v~~~~~~~  106 (258)
                      =|+|+|+|+.|++++..+..      .|+ +|.++++..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCC
Confidence            47888999999886544432      688 899998764

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=89.46  E-value=0.4  Score=33.48  Aligned_cols=71  Identities=15%  Similarity=0.093  Sum_probs=44.1

Q ss_pred             CCCEEEEE--ccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---eEEcCCCCCCccHHHHHHHhcCC
Q 025101           71 VGSTVVIF--GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTDG  141 (258)
Q Consensus        71 ~g~~vlI~--G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~  141 (258)
                      .|.++|=.  |+|++|+-|+    .+|+..|+.++.+.+..+.+++    ++..   ..+..     .+..+.++.....
T Consensus        43 ~~~~vLDlFaGsG~~glEal----SRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~-----~d~~~~l~~~~~~  113 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEAL----SRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVIN-----QSSLDFLKQPQNQ  113 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHH----HTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEEC-----SCHHHHTTSCCSS
T ss_pred             ccceEeecccCccceeeeee----eecceeeEEeecccchhhhHhhHHhhhccccccccccc-----ccccccccccccC
Confidence            55677765  5577776443    5799899999999888776654    5532   22222     2344444443333


Q ss_pred             -CCCEEE-Eec
Q 025101          142 -GADYCF-ECV  150 (258)
Q Consensus       142 -~~d~v~-d~~  150 (258)
                       .||+|| |.-
T Consensus       114 ~~fDlIFlDPP  124 (183)
T d2ifta1         114 PHFDVVFLDPP  124 (183)
T ss_dssp             CCEEEEEECCC
T ss_pred             CcccEEEechh
Confidence             799998 533

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=89.24  E-value=0.55  Score=34.16  Aligned_cols=94  Identities=9%  Similarity=-0.025  Sum_probs=56.6

Q ss_pred             CEEEEEccCH----HHHHHHHHHHHc--CCCeEEEE-cCCcchHH-HHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           73 STVVIFGLGS----IGLAVAEGARLC--GATRIIGV-DVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        73 ~~vlI~G~g~----~G~~a~~l~~~~--g~~~v~~~-~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      =+|.|+|+|.    ++..-+...+..  ++ +++++ +++.++.+ ++++++....-.+.     ++.+.+.+   ..+|
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~---~~iD   87 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSLQTIEQLQLKHATGFD-----SLESFAQY---KDID   87 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHHHHHHHTTCTTCEEES-----CHHHHHHC---TTCS
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHHHHHHhcccccceeec-----chhhcccc---cccc
Confidence            4789999865    334334444443  46 77754 55555544 45677754322222     34333322   2799


Q ss_pred             EEEEecCChhhHHHHHHhhhcC----CceEEEecc
Q 025101          145 YCFECVGLASLVQEAYACCRKG----WGKTIVLGV  175 (258)
Q Consensus       145 ~v~d~~g~~~~~~~~~~~l~~~----~G~~v~~g~  175 (258)
                      +|+.|+......+.+..++..+    .++-+++..
T Consensus        88 ~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EK  122 (237)
T d2nvwa1          88 MIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEW  122 (237)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEES
T ss_pred             eeeccCCCcchhhHHHHHHHhcccccCCceEEEec
Confidence            9999999888788888887753    035666763

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=89.20  E-value=0.19  Score=35.30  Aligned_cols=93  Identities=17%  Similarity=0.055  Sum_probs=51.4

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCce-EEcCCCCCCccHHHHHHHhcCCCCCEEEEecC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  151 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g  151 (258)
                      +|.|+|+ |-+|+-+++++..+-.-++..+..+...-..+.+.-... ..+...  .....    +..-.+.|+||-+.+
T Consensus         7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~Dvvf~alp   80 (183)
T d2cvoa1           7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPN--LVAVK----DADFSNVDAVFCCLP   80 (183)
T ss_dssp             EEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCC--CBCGG----GCCGGGCSEEEECCS
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCcccccccccccccccc--chhhh----hhhhcccceeeeccc
Confidence            6899997 999999999998764325555543332222222111000 000000  00000    000016999999999


Q ss_pred             ChhhHHHHHHhhhcCCceEEEec
Q 025101          152 LASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       152 ~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ... .......+... +.++...
T Consensus        81 ~~~-s~~~~~~l~~~-~~~v~~~  101 (183)
T d2cvoa1          81 HGT-TQEIIKGLPQE-LKIVDLS  101 (183)
T ss_dssp             SSH-HHHHHHTSCSS-CEEEECS
T ss_pred             cch-HHHHHHHHHhc-Ccccccc
Confidence            877 45555677777 8777654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=89.19  E-value=0.39  Score=32.23  Aligned_cols=39  Identities=28%  Similarity=0.384  Sum_probs=30.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchH
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  109 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~  109 (258)
                      +..+|.|+|+|.+|..++..+...| +..++.++..+++.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            3568999999999999887777766 34788899887654

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=89.08  E-value=0.24  Score=36.68  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=27.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      -++|+|+|+.|+.++..+..+|. +|.+++..+
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~-kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWP   75 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            48888999999999999999999 888888654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=88.94  E-value=0.44  Score=31.77  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=29.7

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  110 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~  110 (258)
                      .+|.|+|+|.+|..++.++...+...++.++..+++.+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~   39 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQ   39 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccch
Confidence            47889999999988877776667668888998777643

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=0.26  Score=37.96  Aligned_cols=31  Identities=23%  Similarity=0.183  Sum_probs=27.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      ++|||+|+ |-+|..++..+...|. .|+++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            68999986 9999999988888898 8998863

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.56  E-value=0.075  Score=36.92  Aligned_cols=132  Identities=16%  Similarity=0.164  Sum_probs=65.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEecCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  152 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~  152 (258)
                      +|.|+|+|.+|..-+..++.. +...+.+++...++     +...  ......   .++.+.+.   ...+|+|+-|+..
T Consensus         9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~---~~~~e~l~---~~~iD~V~I~tp~   75 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR-----ELGS--LDEVRQ---ISLEDALR---SQEIDVAYICSES   75 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS-----CCCE--ETTEEB---CCHHHHHH---CSSEEEEEECSCG
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH-----HHHH--hhccCc---CCHHHHHh---CCCcchhhhcccc
Confidence            689999999998766655532 22123333222211     1110  000011   22333222   2279999999988


Q ss_pred             hhhHHHHHHhhhcCCceEEEecccCCCCceee-chHHH-HhcCceEEecccCCCCCCCcHHHHHHHHHcCCC
Q 025101          153 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFEV-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  222 (258)
Q Consensus       153 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  222 (258)
                      ....+.+..++..  |+-+++..+........ ....+ ..++..+.-.  ....+...+..+-+++.+|.+
T Consensus        76 ~~H~~~~~~al~~--gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~--~~~r~~p~~~~~k~~i~~~~l  143 (172)
T d1lc0a1          76 SSHEDYIRQFLQA--GKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEE--HVELLKNIFLKDQDIFVQKLL  143 (172)
T ss_dssp             GGHHHHHHHHHHT--TCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEE--CGGGGTTHHHHHHHHHHHHHT
T ss_pred             ccccccccccccc--chhhhcCCCccccHHHHHHHHHHHHHcCCeEEEe--cHHHhhHHHHHHHHHHHcCCC
Confidence            8778888888886  55566653322110000 01111 2223332211  123334567777778877744

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.54  E-value=0.34  Score=35.07  Aligned_cols=36  Identities=25%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHH--------------------cCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARL--------------------CGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~--------------------~g~~~v~~~~~~~  106 (258)
                      +|++|+|+|+|.+++=++.++..                    .|+++|.++.|..
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            58999999999999999888875                    4666777776554

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=88.14  E-value=0.49  Score=34.53  Aligned_cols=49  Identities=8%  Similarity=0.088  Sum_probs=39.9

Q ss_pred             hhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025101           63 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  114 (258)
Q Consensus        63 l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~  114 (258)
                      +.+..+++++++||-+|+|. |.+...+++. +. +|++++.++.-.+.+++
T Consensus        13 iv~~~~~~~~d~VlEIGpG~-G~LT~~Ll~~-~~-~v~avE~D~~l~~~l~~   61 (235)
T d1qama_          13 IMTNIRLNEHDNIFEIGSGK-GHFTLELVQR-CN-FVTAIEIDHKLCKTTEN   61 (235)
T ss_dssp             HHTTCCCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEECSCHHHHHHHHH
T ss_pred             HHHhcCCCCCCeEEEECCCc-hHHHHHHHhC-cC-ceEEEeeccchHHHHHH
Confidence            34667889999999999984 8888888875 56 89999988877777765

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=88.07  E-value=0.32  Score=34.79  Aligned_cols=92  Identities=14%  Similarity=0.139  Sum_probs=58.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc--eEEcCCCCCCccHHHHHHHhcCC-CC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIIDMTDG-GA  143 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~~~~-~~  143 (258)
                      ++++++=+|+|+ |.=.+-+|-...-.+++.++++..|..++++    +|..  .+++.+.   +++       ... .|
T Consensus        65 ~~~~ilDiGsGa-G~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~---E~~-------~~~~~f  133 (207)
T d1jsxa_          65 QGERFIDVGTGP-GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV---EEF-------PSEPPF  133 (207)
T ss_dssp             CSSEEEEETCTT-TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT---TTS-------CCCSCE
T ss_pred             cCCceeeeeccC-CceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccch---hhh-------cccccc
Confidence            457888888643 4333344444432389999999999888754    6754  4565544   222       222 68


Q ss_pred             CEEEE-ecCC-hhhHHHHHHhhhcCCceEEEec
Q 025101          144 DYCFE-CVGL-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       144 d~v~d-~~g~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      |+|.- +++. +..+..+...+.++ |+++.+=
T Consensus       134 D~V~sRA~~~~~~ll~~~~~~l~~~-g~~~~~K  165 (207)
T d1jsxa_         134 DGVISRAFASLNDMVSWCHHLPGEQ-GRFYALK  165 (207)
T ss_dssp             EEEECSCSSSHHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             ceehhhhhcCHHHHHHHHHHhcCCC-cEEEEEC
Confidence            98884 6654 33466777778888 9988773

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.06  E-value=1.9  Score=32.56  Aligned_cols=95  Identities=19%  Similarity=0.183  Sum_probs=56.8

Q ss_pred             EEEc-cCHHHHHHHHHHHHcCCCeEEEE--cCCcchHHHHHhcCCceEEcCCCCCCccHH--------------------
Q 025101           76 VIFG-LGSIGLAVAEGARLCGATRIIGV--DVISEKFEIGKRFGVTEFVNSKNCGDKSVS--------------------  132 (258)
Q Consensus        76 lI~G-~g~~G~~a~~l~~~~g~~~v~~~--~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~--------------------  132 (258)
                      +|.+ +|..|.+++..++..|..-++++  ..++++.+.++.+|++.+......  ++..                    
T Consensus        72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~--~~~~~~a~~~a~~~g~~~~~~~~~  149 (318)
T d1v71a1          72 VLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYK--DDREKMAKEISEREGLTIIPPYDH  149 (318)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECTTT--TCHHHHHHHHHHHHTCBCCCSSSS
T ss_pred             eeeeccchhhHHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEeccCCc--hHHHHHHHHHHHhcCCEecCCccc
Confidence            4444 59999999999999998433333  234566778888998754422221  1111                    


Q ss_pred             -----------HHHHHhcCCCCCEEEEecCChhh---HHHHHHhhhcCCceEEEec
Q 025101          133 -----------QIIIDMTDGGADYCFECVGLASL---VQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       133 -----------~~i~~~~~~~~d~v~d~~g~~~~---~~~~~~~l~~~~G~~v~~g  174 (258)
                                 .+|.+.. +.+|.+|-++|+..+   +...++...+. .+++.+.
T Consensus       150 ~~~~~g~~t~~~Ei~~q~-~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~-~~ii~v~  203 (318)
T d1v71a1         150 PHVLAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSGSALAARHFAPN-CEVYGVE  203 (318)
T ss_dssp             HHHHHHHTHHHHHHHHHH-CCCSEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred             cccccccchHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCC-ceeeccc
Confidence                       1222222 257888888876543   33445555666 7776554

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=88.02  E-value=0.69  Score=31.71  Aligned_cols=74  Identities=15%  Similarity=0.090  Sum_probs=43.2

Q ss_pred             CCCEEEEEccCHHHH--HHHHHHHHc-C--CCeEEEEcCCcchHHHH--------HhcCCc-eEEcCCCCCCccHHHHHH
Q 025101           71 VGSTVVIFGLGSIGL--AVAEGARLC-G--ATRIIGVDVISEKFEIG--------KRFGVT-EFVNSKNCGDKSVSQIII  136 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~--~a~~l~~~~-g--~~~v~~~~~~~~~~~~~--------~~~g~~-~vi~~~~~~~~~~~~~i~  136 (258)
                      +.-+|.|+|+|++|.  +...+++.. .  ...++.++.++++.+..        ...+.. .+.-..     +..+.++
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~eal~   76 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATT-----DPEEAFT   76 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEES-----CHHHHHS
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecC-----ChhhccC
Confidence            345788999886653  334444422 2  23788899998886532        123433 232222     2333332


Q ss_pred             HhcCCCCCEEEEecCChh
Q 025101          137 DMTDGGADYCFECVGLAS  154 (258)
Q Consensus       137 ~~~~~~~d~v~d~~g~~~  154 (258)
                           +.|+|+.+.|.+.
T Consensus        77 -----~AD~Vvitag~~~   89 (167)
T d1u8xx1          77 -----DVDFVMAHIRVGK   89 (167)
T ss_dssp             -----SCSEEEECCCTTH
T ss_pred             -----CCCEEEECCCcCC
Confidence                 7999999998644

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=0.91  Score=31.50  Aligned_cols=70  Identities=11%  Similarity=0.011  Sum_probs=42.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc--eEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      .+.++|=.++| +|.+.++.+ ..|+.+|+.++.+.+..+.+++    ++..  .++.      .+..+.+.. .+..+|
T Consensus        43 ~~~~vLDlfaG-sG~~gieal-srGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~------~d~~~~l~~-~~~~fD  113 (183)
T d2fpoa1          43 VDAQCLDCFAG-SGALGLEAL-SRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVN------SNAMSFLAQ-KGTPHN  113 (183)
T ss_dssp             TTCEEEETTCT-TCHHHHHHH-HTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEEC------SCHHHHHSS-CCCCEE
T ss_pred             chhhhhhhhcc-ccceeeeEE-ecCcceeEEEEEeechhhHHHHHHhhccccceeeee------ecccccccc-cccccC
Confidence            56677766543 244444533 3688899999999988887654    4543  2332      234444432 223799


Q ss_pred             EEE-Ee
Q 025101          145 YCF-EC  149 (258)
Q Consensus       145 ~v~-d~  149 (258)
                      +|| |.
T Consensus       114 lIf~DP  119 (183)
T d2fpoa1         114 IVFVDP  119 (183)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            998 53

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.79  E-value=2.9  Score=31.48  Aligned_cols=50  Identities=28%  Similarity=0.209  Sum_probs=34.7

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHcCCCeEEEE---cCCcchHHHHHhcCCceEE
Q 025101           71 VGSTVVIFG-LGSIGLAVAEGARLCGATRIIGV---DVISEKFEIGKRFGVTEFV  121 (258)
Q Consensus        71 ~g~~vlI~G-~g~~G~~a~~l~~~~g~~~v~~~---~~~~~~~~~~~~~g~~~vi  121 (258)
                      .|..-+|.. +|..|.+++..++.+|. +++++   ..+++|.+.++.+|+..+.
T Consensus        52 ~g~~~vv~aSsGN~g~a~A~~a~~~G~-~~~i~~p~~~~~~k~~~~~~~Ga~v~~  105 (319)
T d1p5ja_          52 QGCAHFVCSSAGNAGMAAAYAARQLGV-PATIVVPGTTPALTIERLKNEGATCKV  105 (319)
T ss_dssp             TTCCEEEECCSSHHHHHHHHHHHHHTC-CEEEEECTTCCHHHHHHHHHTTCEEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHhhhccc-cceeccccccccccccccccceecccc
Confidence            344455666 49999999999999999 44444   2244567778888876443

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.76  E-value=3.1  Score=28.90  Aligned_cols=32  Identities=28%  Similarity=0.513  Sum_probs=25.7

Q ss_pred             CCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       142 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ++|+|+||+|.-.+.+.+..++..+ -+-+++.
T Consensus       103 gvDiViEcTG~f~~~~~a~~hl~~G-akkViiS  134 (190)
T d1k3ta1         103 GVEYVIESTGLFTAKAAAEGHLRGG-ARKVVIS  134 (190)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTT-CSEEEES
T ss_pred             CCcEEEEecccccccccchhhcccC-cceeeec
Confidence            7999999999766678888889877 6656564

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=87.59  E-value=0.64  Score=30.85  Aligned_cols=37  Identities=16%  Similarity=0.246  Sum_probs=29.5

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHH
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFE  110 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~  110 (258)
                      +|.|+|+|.+|..++..+...|. ..+..++.++++.+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~   39 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ   39 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccch
Confidence            57889999999998887777663 47888898887654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.50  E-value=1  Score=32.40  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           69 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        69 ~~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .-.+.+|++.|+|..|...+++....+.++++.+++.
T Consensus        23 ~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             ChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            3456799999999989888888888898899999875

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.45  E-value=0.52  Score=33.78  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=28.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHH--------------------HcCCCeEEEEcCCc
Q 025101           71 VGSTVVIFGLGSIGLAVAEGAR--------------------LCGATRIIGVDVIS  106 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~--------------------~~g~~~v~~~~~~~  106 (258)
                      .|++|+|+|.|.+++-++.++.                    ..|+++|.++.|..
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            5899999999999998877765                    46777788776643

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=87.20  E-value=0.57  Score=31.36  Aligned_cols=37  Identities=35%  Similarity=0.486  Sum_probs=28.7

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchH
Q 025101           73 STVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  109 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~  109 (258)
                      ++|.|+|+|.+|..++..+...| +..++.++.++++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            57889999999988877676666 34788888887763

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.09  E-value=3.7  Score=29.00  Aligned_cols=106  Identities=18%  Similarity=0.106  Sum_probs=57.6

Q ss_pred             hhhhhhhhcCCCCCCEEEEE-cc---CHHHHHHHHHHHHcCCCeEEEEcCCcchHH-------HHHhcCCceEEcCCCCC
Q 025101           59 GVGAAWRTANVEVGSTVVIF-GL---GSIGLAVAEGARLCGATRIIGVDVISEKFE-------IGKRFGVTEFVNSKNCG  127 (258)
Q Consensus        59 a~~~l~~~~~~~~g~~vlI~-G~---g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~-------~~~~~g~~~vi~~~~~~  127 (258)
                      ++..+.+..+-.++.+|+|+ |.   |+=|+.+++.++..|+ +|.++-..+++..       ..++++.. .++..+  
T Consensus        27 ~a~~i~~~~~~~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--  102 (211)
T d2ax3a2          27 VVLAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVK-DVLVVFLGKKKTPDCEYNYGLYKKFGGK-VVEQFE--  102 (211)
T ss_dssp             HHHHHHHHHSCCTTCEEEEEECSSHHHHHHHHHHHHHTTTSS-EEEEEECCSSCCHHHHHHHHHHHHTTCC-EESCCC--
T ss_pred             HHHHHHHhcccccCCcEEEEECCCCCchhHHHHHHHHHhcCC-eeEEEecCccCCcHHHHHHHHHHHcCCc-cccccc--
Confidence            33334444333345677777 64   5566888888888898 7877654333221       22344443 333222  


Q ss_pred             CccHHHHHHHhcCCCCCEEEEec-CC------hhhHHHHHHhhhcCCceEEEecccC
Q 025101          128 DKSVSQIIIDMTDGGADYCFECV-GL------ASLVQEAYACCRKGWGKTIVLGVDQ  177 (258)
Q Consensus       128 ~~~~~~~i~~~~~~~~d~v~d~~-g~------~~~~~~~~~~l~~~~G~~v~~g~~~  177 (258)
                       +..        ...+|+++|+. |.      ...+...++.+......++.+-..+
T Consensus       103 -~~~--------~~~~dlIIDal~G~Gl~~~l~~~~~~~i~~iN~~~~~vlsiDiPS  150 (211)
T d2ax3a2         103 -PSI--------LNEFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPS  150 (211)
T ss_dssp             -GGG--------GGGCSEEEEESCCTTCCSCCCHHHHHHHHHHHHSCCEEEEESSCT
T ss_pred             -ccc--------ccCceEEEEecccCCccccchHHHHHHHHHHHhhccceeeeccCc
Confidence             110        11689999987 22      1236677777776524566665444

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=86.89  E-value=0.27  Score=30.97  Aligned_cols=34  Identities=18%  Similarity=0.126  Sum_probs=21.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      =.|++|+|+|+|..|.-.+.-+...+. +++...+
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak-~v~~~~~   63 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAK-HPIYQSL   63 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSC-SSEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcC-EEEEEEe
Confidence            368999999999887654433333343 4444443

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=86.85  E-value=0.49  Score=34.35  Aligned_cols=31  Identities=26%  Similarity=0.135  Sum_probs=26.8

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      |+|+|+|+-|+-|+-.+...|. ++..++.+.
T Consensus         5 VIVIGgG~AG~eAA~~aAR~G~-ktllit~~~   35 (230)
T d2cula1           5 VLIVGAGFSGAETAFWLAQKGV-RVGLLTQSL   35 (230)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESCG
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEEecc
Confidence            6788999999999999999999 888887654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=86.67  E-value=0.97  Score=32.93  Aligned_cols=96  Identities=14%  Similarity=0.153  Sum_probs=58.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc--eEEcCCCCCCccHHHHHHHh--cCC
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT--EFVNSKNCGDKSVSQIIIDM--TDG  141 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~--~vi~~~~~~~~~~~~~i~~~--~~~  141 (258)
                      ..+.+++=+|+|+ |.=.+-++-...-.+++.++++..|..+++    ++|..  .+++.+-   +    .+...  ..+
T Consensus        69 ~~~~~ilDiGSGa-GfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~---E----~~~~~~~~~~  140 (239)
T d1xdza_          69 NQVNTICDVGAGA-GFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRA---E----TFGQRKDVRE  140 (239)
T ss_dssp             GGCCEEEEECSSS-CTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCH---H----HHTTCTTTTT
T ss_pred             cCCCeEEeecCCC-chHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehh---h----hccccccccc
Confidence            4567888887642 333333343343338999999999998875    46744  3444332   1    12111  122


Q ss_pred             CCCEEEE-ecCC-hhhHHHHHHhhhcCCceEEEec
Q 025101          142 GADYCFE-CVGL-ASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       142 ~~d~v~d-~~g~-~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .||+|.. +++. +..++.+...++++ |+++.+=
T Consensus       141 ~~D~v~sRAva~l~~ll~~~~~~l~~~-g~~i~~K  174 (239)
T d1xdza_         141 SYDIVTARAVARLSVLSELCLPLVKKN-GLFVALK  174 (239)
T ss_dssp             CEEEEEEECCSCHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             cceEEEEhhhhCHHHHHHHHhhhcccC-CEEEEEC
Confidence            6899985 5554 33477788888898 9988773

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.54  E-value=3.9  Score=28.66  Aligned_cols=74  Identities=15%  Similarity=0.177  Sum_probs=47.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcch----------HHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK----------FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGA  143 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~----------~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~  143 (258)
                      +|++.|.+.+|..+++.+...|. .|.++...+++          .+++++.+.. ++...+.+.+++.+.+.+.   .+
T Consensus         2 kiv~~~~~~~g~~~l~~L~~~g~-~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~-~~~~~~~~~~~~~~~i~~~---~~   76 (203)
T d2blna2           2 KTVVFAYHDMGCLGIEALLAAGY-EISAIFTHTDNPGEKAFYGSVARLAAERGIP-VYAPDNVNHPLWVERIAQL---SP   76 (203)
T ss_dssp             EEEEEECHHHHHHHHHHHHHTTC-EEEEEECCCC------CCCCHHHHHHHHTCC-EECCSCCCSHHHHHHHHHT---CC
T ss_pred             eEEEEecCHHHHHHHHHHHHCCC-CEEEEEcCCCCCCcccccCHHHHHHHHcCCc-ceecccccchhhhhhhhhh---cc
Confidence            57888988899999999888898 77665443322          2455666654 3333332335566666654   68


Q ss_pred             CEEEEecCC
Q 025101          144 DYCFECVGL  152 (258)
Q Consensus       144 d~v~d~~g~  152 (258)
                      |++|-+...
T Consensus        77 Dlii~~g~~   85 (203)
T d2blna2          77 DVIFSFYYR   85 (203)
T ss_dssp             SEEEEESCC
T ss_pred             cceeeeecc
Confidence            999877544

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=86.28  E-value=0.84  Score=31.01  Aligned_cols=40  Identities=23%  Similarity=0.365  Sum_probs=31.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchH
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKF  109 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~  109 (258)
                      .+..+|.|+|+|.+|..++..+...|. ..++.++.++++.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            345799999999999998888887774 4688888876654

>d1jzta_ c.104.1.1 (A:) Hypothetical protein YNL200c (YNU0_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein YNL200c (YNU0 YEAST)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.87  E-value=2.2  Score=31.00  Aligned_cols=99  Identities=14%  Similarity=0.065  Sum_probs=53.0

Q ss_pred             CCCEEEEE-cc---CHHHHHHHHHHHHcCCCeEEEEcCCc-chHHH-------HHhcCCceEEcCCCCCCccHHHHHHHh
Q 025101           71 VGSTVVIF-GL---GSIGLAVAEGARLCGATRIIGVDVIS-EKFEI-------GKRFGVTEFVNSKNCGDKSVSQIIIDM  138 (258)
Q Consensus        71 ~g~~vlI~-G~---g~~G~~a~~l~~~~g~~~v~~~~~~~-~~~~~-------~~~~g~~~vi~~~~~~~~~~~~~i~~~  138 (258)
                      ++.+|+|+ |.   |+=|+++++.++..|. +|.++.... ++.+.       ++..+.. ++...+   .+...   ..
T Consensus        54 ~~~~vlil~G~GNNGGDGl~~Ar~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~---~~  125 (243)
T d1jzta_          54 KGKHVFVIAGPGNNGGDGLVCARHLKLFGY-NPVVFYPKRSERTEFYKQLVHQLNFFKVP-VLSQDE---GNWLE---YL  125 (243)
T ss_dssp             HTCEEEEEECSSHHHHHHHHHHHHHHHTTC-CEEEECCCCCTTCHHHHHHHHHHHHTTCC-EECSST---TCGGG---GG
T ss_pred             CCCeEEEEECCCCccHHHHHHHHHHHhcCC-eeEEEEeCCCcCCHHHHHHHHHHHHCCCc-eecccc---cchhh---cc
Confidence            45678877 53   5667888888888998 666554322 22222       2234432 333333   22211   11


Q ss_pred             cCCCCCEEEEecCC-------hhhHHHHHHhhh---cCCceEEEecccCC
Q 025101          139 TDGGADYCFECVGL-------ASLVQEAYACCR---KGWGKTIVLGVDQP  178 (258)
Q Consensus       139 ~~~~~d~v~d~~g~-------~~~~~~~~~~l~---~~~G~~v~~g~~~~  178 (258)
                      ....+|+|+|+.=+       ..-+...++.+.   .. ..++.+-..++
T Consensus       126 ~~~~~d~iVDal~G~Gl~~~l~~~~~~li~~iN~~~~~-~~vvSiDIPSG  174 (243)
T d1jzta_         126 KPEKTLCIVDAIFGFSFKPPMREPFKGIVEELCKVQNI-IPIVSVDVPTG  174 (243)
T ss_dssp             STTTEEEEEEESCCTTCCSSCCTTHHHHHHHHHHHTTT-SCEEEESSCTT
T ss_pred             ccccccEEEEeeecccccCcccHHHHHHHHHHHHhCCC-CcEEEEeCCCC
Confidence            12279999997632       112455555554   33 55777765544

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.76  E-value=1.3  Score=36.32  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=28.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      +.+|+|+|+|++|.-++.-+-..|.++++++|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            46899999999999888777778998898886543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=85.59  E-value=0.9  Score=29.45  Aligned_cols=61  Identities=7%  Similarity=0.012  Sum_probs=43.9

Q ss_pred             hhcCCCCCCEEEEE-ccC-HHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCC
Q 025101           65 RTANVEVGSTVVIF-GLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  125 (258)
Q Consensus        65 ~~~~~~~g~~vlI~-G~g-~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~  125 (258)
                      +.++++.-+.+++. +.- ..-.++...++..+..++++-..+++..+.++++|++.++++..
T Consensus        58 ~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~~  120 (134)
T d2hmva1          58 LSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEK  120 (134)
T ss_dssp             HHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHHH
T ss_pred             hccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChHH
Confidence            45566666666554 443 44455566667778768998888888899999999999987653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=85.57  E-value=0.97  Score=30.04  Aligned_cols=37  Identities=24%  Similarity=0.434  Sum_probs=29.1

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchH
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKF  109 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~  109 (258)
                      .+|.|+|+|.+|..++..+...|. ..++.++.++++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~   39 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERV   39 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence            468899999999998877777664 3688888887664

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.49  E-value=0.43  Score=36.23  Aligned_cols=34  Identities=26%  Similarity=0.234  Sum_probs=26.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHH-H-cCCCeEEEEcCCc
Q 025101           72 GSTVVIFGLGSIGLAVAEGAR-L-CGATRIIGVDVIS  106 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~-~-~g~~~v~~~~~~~  106 (258)
                      +..|+|+|+|+.|+.++..++ . .|+ +|.++++.+
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~-~~~~~~~~~   85 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSV   85 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEEcCC
Confidence            445999999999988766554 3 588 899998765

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.48  E-value=0.49  Score=31.18  Aligned_cols=36  Identities=25%  Similarity=0.242  Sum_probs=26.2

Q ss_pred             CCCCEEEEEccCHHHHHHHH-H---HHHcCCCeEEEEcCCc
Q 025101           70 EVGSTVVIFGLGSIGLAVAE-G---ARLCGATRIIGVDVIS  106 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~-l---~~~~g~~~v~~~~~~~  106 (258)
                      +++++++|+|+|.+|.=++. +   ++..|. +|+.+.+.+
T Consensus        35 ~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~   74 (137)
T d1m6ia2          35 REVKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEK   74 (137)
T ss_dssp             HHCSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecccc
Confidence            45789999999998854332 2   245788 899887654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=85.19  E-value=0.3  Score=36.96  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=26.4

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           73 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        73 ~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      ++|||+|+ |-+|..+++.+...|. .+++++..
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT-EEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecCc
Confidence            47999987 9999999999988898 67766543

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=85.06  E-value=0.2  Score=34.84  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=20.8

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGA   96 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~   96 (258)
                      .+|+|+|+|.+|.-++..++.+|.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~   27 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGY   27 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCC
Confidence            348999999999998888888887

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=84.95  E-value=1.6  Score=32.43  Aligned_cols=74  Identities=14%  Similarity=0.141  Sum_probs=45.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcCCCCCE
Q 025101           70 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDGGADY  145 (258)
Q Consensus        70 ~~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~  145 (258)
                      ..+.+||=+|+|+ |..++.+++.....+|++++.+++..+.+++    ++...+--..    .++.+   ...++.||+
T Consensus       107 ~~~~~vlDlGtGS-G~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~----~d~~~---~~~~~~fDl  178 (274)
T d2b3ta1         107 EQPCRILDLGTGT-GAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQ----SDWFS---ALAGQQFAM  178 (274)
T ss_dssp             SSCCEEEEETCTT-SHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEEC----CSTTG---GGTTCCEEE
T ss_pred             ccccceeeeehhh-hHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeee----ccccc---ccCCCceeE
Confidence            3456788777653 5566677776643499999999998887754    6654321111    22322   222338999


Q ss_pred             EEEecC
Q 025101          146 CFECVG  151 (258)
Q Consensus       146 v~d~~g  151 (258)
                      |+.+.+
T Consensus       179 IvsNPP  184 (274)
T d2b3ta1         179 IVSNPP  184 (274)
T ss_dssp             EEECCC
T ss_pred             EEecch
Confidence            997654

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.87  E-value=0.49  Score=32.65  Aligned_cols=98  Identities=12%  Similarity=0.106  Sum_probs=57.7

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC----CceEEcCCCCCCccHHHHHHHhcCCCCC
Q 025101           70 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----VTEFVNSKNCGDKSVSQIIIDMTDGGAD  144 (258)
Q Consensus        70 ~~g~~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g----~~~vi~~~~~~~~~~~~~i~~~~~~~~d  144 (258)
                      -.|++++|+|- .-+|.=++.++...|+ .|+........ ++.+...    ...+-+..+    -..+.+++... ..|
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~ga-TVt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~lk~~~~-~aD   99 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQ-KFTRGESLKLNKHHVEDLGE----YSEDLLKKCSL-DSD   99 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEE-EEESCCCSSCCCCEEEEEEE----CCHHHHHHHHH-HCS
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCC-EEEEecccccc-ccccccceeeeeeccccccc----cchhHHhhccc-cCC
Confidence            46899999996 5889988888888899 78766543211 1111100    111111110    01112222111 499


Q ss_pred             EEEEecCChhhHHHHHHhhhcCCceEEEeccc
Q 025101          145 YCFECVGLASLVQEAYACCRKGWGKTIVLGVD  176 (258)
Q Consensus       145 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  176 (258)
                      +++.++|.+. +..--+.++++ ..++.+|..
T Consensus       100 IvIsavG~p~-~~i~~d~ik~G-avvIDvGi~  129 (171)
T d1edza1         100 VVITGVPSEN-YKFPTEYIKEG-AVCINFACT  129 (171)
T ss_dssp             EEEECCCCTT-CCBCTTTSCTT-EEEEECSSS
T ss_pred             EEEEccCCCc-cccChhhcccC-ceEeecccc
Confidence            9999999876 32344567887 888888854

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.84  E-value=0.32  Score=38.98  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=29.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      +.+|||+|+|++|.-++..+...|.+++.++|..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            4689999999999999998888999888888753

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.72  E-value=1.7  Score=33.95  Aligned_cols=97  Identities=14%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceE--------------EcCCCCCCccHHH
Q 025101           72 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF--------------VNSKNCGDKSVSQ  133 (258)
Q Consensus        72 g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v--------------i~~~~~~~~~~~~  133 (258)
                      +.+|| -+.+++|...+++++..|..+|++.|.+++-.+.+++    .+....              +....   .+...
T Consensus        46 ~~~vL-D~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~---~Da~~  121 (375)
T d2dula1          46 PKIVL-DALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINH---DDANR  121 (375)
T ss_dssp             CSEEE-ESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEE---SCHHH
T ss_pred             CCEEE-EcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeeh---hhhhh
Confidence            44443 3445668899999998898899999999998888765    222110              11111   22322


Q ss_pred             HHHHhcCCCCCEEE-EecCChh-hHHHHHHhhhcCCceEEEec
Q 025101          134 IIIDMTDGGADYCF-ECVGLAS-LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       134 ~i~~~~~~~~d~v~-d~~g~~~-~~~~~~~~l~~~~G~~v~~g  174 (258)
                      .+.+ .+..||+|. |.-|++. -++.+++.++.+ |.+..-.
T Consensus       122 ~~~~-~~~~fDvIDiDPfGs~~pfldsAi~a~~~~-Gll~vTa  162 (375)
T d2dula1         122 LMAE-RHRYFHFIDLDPFGSPMEFLDTALRSAKRR-GILGVTA  162 (375)
T ss_dssp             HHHH-STTCEEEEEECCSSCCHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hhHh-hcCcCCcccCCCCCCcHHHHHHHHHHhccC-CEEEEEe
Confidence            2322 223799874 8888743 388999999987 7766554

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.54  E-value=6.2  Score=29.26  Aligned_cols=100  Identities=17%  Similarity=0.138  Sum_probs=57.7

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEE-cC--CcchHHHHHhcCCceEEcCCCC-----------------------
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGV-DV--ISEKFEIGKRFGVTEFVNSKNC-----------------------  126 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~-~~--~~~~~~~~~~~g~~~vi~~~~~-----------------------  126 (258)
                      +.|+...+|..|.+++..++.+|. +.+++ ..  ++.+...++.+|+..+......                       
T Consensus        63 ~~vv~~SsGN~g~a~A~~a~~~g~-~~~iv~p~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (302)
T d1ve1a1          63 QVIVEPTSGNTGIGLAMIAASRGY-RLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEELGAFMPDQ  141 (302)
T ss_dssp             CEEEESCCSHHHHHHHHHHHHHTC-EEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHHTCBCCCT
T ss_pred             cEEEEecCCcchhhhhhhhhccCc-ceeEeeecccchheeehhhhhhhcchhcccccchHHHHHHhhhhhhccCcccccc
Confidence            334444669999999999999998 44443 22  3345566777776543322210                       


Q ss_pred             --CCc-------cHHHHHHHhcCCCCCEEEEecCChhhHH---HHHHhhhcCCceEEEec
Q 025101          127 --GDK-------SVSQIIIDMTDGGADYCFECVGLASLVQ---EAYACCRKGWGKTIVLG  174 (258)
Q Consensus       127 --~~~-------~~~~~i~~~~~~~~d~v~d~~g~~~~~~---~~~~~l~~~~G~~v~~g  174 (258)
                        ++.       ....+|.+..++.+|.||-++|+...+.   ..++...|. -+++.+-
T Consensus       142 ~~~~~~~~~~~~t~~~EI~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~-~~iigve  200 (302)
T d1ve1a1         142 FKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPH-VKVIAVE  200 (302)
T ss_dssp             TTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTT-CEEEEEE
T ss_pred             CccchhHHHHHHHHHHHHHHHcCCCCCeEEEeecCcHHHHHHHHHHHhcCCC-CEEEEEE
Confidence              000       0112444445557999999988765444   344445565 6776554

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=84.46  E-value=0.37  Score=36.97  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=26.0

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  106 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~  106 (258)
                      |||+|+|.-|+.++.-+...|. +|++++..+
T Consensus        10 VlVVG~G~AGl~AAl~aa~~G~-~V~lleK~~   40 (330)
T d1neka2          10 AVVIGAGGAGMRAALQISQSGQ-TCALLSKVF   40 (330)
T ss_dssp             CEEECCSHHHHHHHHHHHHTTC-CCEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHcCC-eEEEEeCCC
Confidence            7888999999998877777899 898887654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.36  E-value=4.4  Score=27.40  Aligned_cols=71  Identities=21%  Similarity=0.182  Sum_probs=40.2

Q ss_pred             EEEEEccCHHH--HHHHHHHHHcC---CCeEEEEcCCcch--HHHHH--------hcCCc-eEEcCCCCCCccHHHHHHH
Q 025101           74 TVVIFGLGSIG--LAVAEGARLCG---ATRIIGVDVISEK--FEIGK--------RFGVT-EFVNSKNCGDKSVSQIIID  137 (258)
Q Consensus        74 ~vlI~G~g~~G--~~a~~l~~~~g---~~~v~~~~~~~~~--~~~~~--------~~g~~-~vi~~~~~~~~~~~~~i~~  137 (258)
                      +|.|+|+|++|  .+...+++...   ...++.++.++++  .+.+.        +++.. .+....+     ..+.++ 
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td-----~~~al~-   76 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLD-----RRRALD-   76 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESC-----HHHHHT-
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCC-----chhhcC-
Confidence            57889987544  56666665432   2367778877654  33222        23332 3333332     333332 


Q ss_pred             hcCCCCCEEEEecCChh
Q 025101          138 MTDGGADYCFECVGLAS  154 (258)
Q Consensus       138 ~~~~~~d~v~d~~g~~~  154 (258)
                          +.|+|+.+.+.+.
T Consensus        77 ----gaDvVv~ta~~~~   89 (169)
T d1s6ya1          77 ----GADFVTTQFRVGG   89 (169)
T ss_dssp             ----TCSEEEECCCTTH
T ss_pred             ----CCCEEEEccccCC
Confidence                7999999998643

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.31  E-value=0.62  Score=33.35  Aligned_cols=30  Identities=37%  Similarity=0.421  Sum_probs=23.6

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcC
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDV  104 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~  104 (258)
                      |+|+|+|+-|+.++..+..+|.++|.+++.
T Consensus         6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             EEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            678899999999877777777656777654

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.26  E-value=4.4  Score=31.60  Aligned_cols=46  Identities=20%  Similarity=0.138  Sum_probs=32.0

Q ss_pred             EEEE-EccCHHHHHHHHHHHHcCCCeEEEEc------CCcchHHHHHhcCCceE
Q 025101           74 TVVI-FGLGSIGLAVAEGARLCGATRIIGVD------VISEKFEIGKRFGVTEF  120 (258)
Q Consensus        74 ~vlI-~G~g~~G~~a~~l~~~~g~~~v~~~~------~~~~~~~~~~~~g~~~v  120 (258)
                      ++++ .++|.-|.+++..++.+|. +.+++-      +...+...++.+|++.+
T Consensus       104 ~iv~easaGN~g~a~A~aaa~~Gl-~~~I~mp~~~~~~k~~~v~~m~~~GAeVv  156 (390)
T d1qopb_         104 EIIAETGAGQHGVASALASALLGL-KCRIYMGAKDVERQSPNVFRMRLMGAEVI  156 (390)
T ss_dssp             EEEEEESSSHHHHHHHHHHHHHTC-EEEEEEEHHHHHHCHHHHHHHHHTTCEEE
T ss_pred             eeeeehhHHHHHHHHHHHHHhccC-ceEEeecccccccchHHHHHHHhcCceEE
Confidence            4555 4679999999999999998 554441      12344566778998644

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.98  E-value=1.6  Score=30.03  Aligned_cols=89  Identities=13%  Similarity=0.084  Sum_probs=50.3

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHc-CCCeEEEEcC-Cc-----chHHHHHh-c-CC--ceEEcCCCCCCccHHHHHHHhcCC
Q 025101           74 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDV-IS-----EKFEIGKR-F-GV--TEFVNSKNCGDKSVSQIIIDMTDG  141 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~-g~~~v~~~~~-~~-----~~~~~~~~-~-g~--~~vi~~~~~~~~~~~~~i~~~~~~  141 (258)
                      +|.|+|+ |-+|+-+++++..+ .+ ++..+.. +.     ++...... + +.  ..+....+   .       .....
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~   71 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSD---V-------RDFSA   71 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESC---G-------GGTCT
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccchh---h-------hhhhc
Confidence            6889997 99999999999987 45 5544321 11     12222211 1 11  11111111   0       11112


Q ss_pred             CCCEEEEecCChhhHHHHHHhhhcCCceEEEec
Q 025101          142 GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       142 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      ++|++|-|.+.....+..-.....+ -+++..+
T Consensus        72 ~~dvvf~alp~~~s~~~~~~~~~~~-~~vIDlS  103 (179)
T d2g17a1          72 DVDVVFLATAHEVSHDLAPQFLQAG-CVVFDLS  103 (179)
T ss_dssp             TCCEEEECSCHHHHHHHHHHHHHTT-CEEEECS
T ss_pred             ccceeeccccchhHHHHhhhhhhcC-ceeeccc
Confidence            7999999999877455555555655 6777665

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.94  E-value=0.63  Score=31.37  Aligned_cols=31  Identities=29%  Similarity=0.313  Sum_probs=24.2

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      .+|+|+|+|.+|.-+++.++. +. +|.++++.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~-~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CC-CEEEEecc
Confidence            378999999999887776654 56 88888764

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=83.58  E-value=2  Score=32.20  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=35.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEE---cCCcchHHHHHhcCCceEE
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGV---DVISEKFEIGKRFGVTEFV  121 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~---~~~~~~~~~~~~~g~~~vi  121 (258)
                      ++..|+...+|..|.+++..++.+|. +++++   ..++++.+.++.+|+..+.
T Consensus        63 ~~~~vv~aSsGN~g~a~A~~aa~~G~-~~~i~vp~~~~~~~~~~~~~~Ga~vi~  115 (310)
T d1ve5a1          63 NPKGLLAVSSGNHAQGVAYAAQVLGV-KALVVMPEDASPYKKACARAYGAEVVD  115 (310)
T ss_dssp             SCCCEEEECSSHHHHHHHHHHHHHTC-CEEEECCCC--CCHHHHHHHTTCEEEC
T ss_pred             ccCCccccCchhhHHHHHHHHHHcCC-eEEEeecccchHHHHHHHhhhccccce
Confidence            34445554679999999999999999 55544   2355778888999986443

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=83.40  E-value=0.51  Score=34.10  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=23.9

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025101           75 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  105 (258)
Q Consensus        75 vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~  105 (258)
                      |+|+|+|+-|+.++..+...|.++|.+++..
T Consensus         6 vvVIG~GpAG~~aAi~aa~~g~k~V~vie~~   36 (240)
T d1feca1           6 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQ   36 (240)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHCCCEEEEESC
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEEe
Confidence            6788999999888777776776467777654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.35  E-value=1.3  Score=30.07  Aligned_cols=37  Identities=27%  Similarity=0.478  Sum_probs=29.4

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCC-eEEEEcCCcchH
Q 025101           73 STVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKF  109 (258)
Q Consensus        73 ~~vlI~G~g~~G~~a~~l~~~~g~~-~v~~~~~~~~~~  109 (258)
                      .+|.|+|+|.+|..++..+...|.. .++.++.++++.
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a   57 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKL   57 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhh
Confidence            5799999999999998888877643 688888777653

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=83.27  E-value=5.2  Score=27.38  Aligned_cols=97  Identities=20%  Similarity=0.271  Sum_probs=54.9

Q ss_pred             CCCCCEEEEEcc--CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCC-CCCE
Q 025101           69 VEVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADY  145 (258)
Q Consensus        69 ~~~g~~vlI~G~--g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-~~d~  145 (258)
                      ++++.+||=+|+  |+--+.+.+...  ...+|++++..+-+     .......+...- ........+.....+ .+|+
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~--~~~~v~~vDl~~~~-----~i~~~~~~~~d~-~~~~~~~~~~~~~~~~~~Dl   91 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIG--GKGRIIACDLLPMD-----PIVGVDFLQGDF-RDELVMKALLERVGDSKVQV   91 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHC--TTCEEEEEESSCCC-----CCTTEEEEESCT-TSHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCCeEEEEeccCCcceEEEEeecc--ccceEEEeeccccc-----ccCCceEeeccc-ccchhhhhhhhhccCcceeE
Confidence            578899998886  544444443332  33378888866522     111112332221 123444445444444 8999


Q ss_pred             EE-E----ecCChh------------hHHHHHHhhhcCCceEEEec
Q 025101          146 CF-E----CVGLAS------------LVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       146 v~-d----~~g~~~------------~~~~~~~~l~~~~G~~v~~g  174 (258)
                      |+ |    ++|...            .+..+.++|+++ |.++.=-
T Consensus        92 VlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~g-G~fV~K~  136 (180)
T d1ej0a_          92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVKV  136 (180)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             EEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCC-CcEEEEE
Confidence            97 3    445422            466788889999 9887443

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.04  E-value=0.85  Score=32.84  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=24.0

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI  105 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~--~v~~~~~~  105 (258)
                      +|+|+|+|+-|+.++..+..+|.+  +|.+++..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            588999999999887777655542  67777753

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.53  E-value=1.2  Score=29.42  Aligned_cols=37  Identities=27%  Similarity=0.395  Sum_probs=27.6

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCC-CeEEEEcCCcchHH
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFE  110 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~-~~v~~~~~~~~~~~  110 (258)
                      +|.|+|+|.+|..++..+...+. ..+..++.++++.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~   39 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAE   39 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccccccc
Confidence            57889999999887776665553 37888888776543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.31  E-value=0.12  Score=37.58  Aligned_cols=23  Identities=35%  Similarity=0.364  Sum_probs=19.1

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCC
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGA   96 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~   96 (258)
                      +|+|+|+|.+|+.++..+...|.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~   24 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYH   24 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHT
T ss_pred             EEEEECchHHHHHHHHHHHHCCC
Confidence            68999999999987777766675

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.16  E-value=1.1  Score=31.25  Aligned_cols=33  Identities=15%  Similarity=0.072  Sum_probs=25.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCC-eEEEEcCCc
Q 025101           74 TVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVIS  106 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g~~-~v~~~~~~~  106 (258)
                      +|+|+|+|.+|+-++.-++.++.. +|+++++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            689999999999888877766442 677777543

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=82.13  E-value=1  Score=35.05  Aligned_cols=31  Identities=26%  Similarity=0.254  Sum_probs=25.0

Q ss_pred             CCEEEEEcc-CHHHHHHHH-HHHHcCCCeEEEEc
Q 025101           72 GSTVVIFGL-GSIGLAVAE-GARLCGATRIIGVD  103 (258)
Q Consensus        72 g~~vlI~G~-g~~G~~a~~-l~~~~g~~~v~~~~  103 (258)
                      +.+|||+|+ |-+|..++. |++..|. +|++++
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~-~V~~~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence            568999986 999977665 5567788 899986

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.87  E-value=1.3  Score=29.35  Aligned_cols=36  Identities=22%  Similarity=0.191  Sum_probs=27.9

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC-CCeEEEEcCCcchH
Q 025101           74 TVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  109 (258)
Q Consensus        74 ~vlI~G~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~  109 (258)
                      +|.|+|+|.+|..++..+...| +..+..++.++++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   38 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLA   38 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchh
Confidence            5788999999988877777655 34788888887664

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.75  E-value=0.84  Score=34.99  Aligned_cols=30  Identities=30%  Similarity=0.380  Sum_probs=22.8

Q ss_pred             EEEEccCHHHHHH-HHHHH---HcCCCeEEEEcCC
Q 025101           75 VVIFGLGSIGLAV-AEGAR---LCGATRIIGVDVI  105 (258)
Q Consensus        75 vlI~G~g~~G~~a-~~l~~---~~g~~~v~~~~~~  105 (258)
                      |||+|+|+.|+.+ +++++   ..|+ +|++++..
T Consensus        24 VlIIG~G~AGl~AA~~aa~~~~~~G~-~V~vieK~   57 (356)
T d1jnra2          24 ILIIGGGFSGCGAAYEAAYWAKLGGL-KVTLVEKA   57 (356)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHTTTTC-CEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcC-EEEEEeCC
Confidence            6888999999765 55554   3688 89999754

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=81.21  E-value=1.4  Score=29.37  Aligned_cols=90  Identities=14%  Similarity=0.066  Sum_probs=45.1

Q ss_pred             EEEEEcc-CHHHHHHHHHHHH---cCCCeEEEEcCCcchHHHHHhcCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEEe
Q 025101           74 TVVIFGL-GSIGLAVAEGARL---CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  149 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~---~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d~  149 (258)
                      +|.|+|+ |-+|+-+++++..   +-...+..+..+....+.. .++-........   .+. +.+     .++|+||-|
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~-~~~~~~~~~~~~---~~~-~~~-----~~~DvvF~a   71 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAP-NFGKDAGMLHDA---FDI-ESL-----KQLDAVITC   71 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCC-CSSSCCCBCEET---TCH-HHH-----TTCSEEEEC
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccccc-ccCCcceeeecc---cch-hhh-----ccccEEEEe
Confidence            6889997 9999999986542   2222555554332211110 111111100000   111 111     269999999


Q ss_pred             cCChhhHHHHHHhhhcCCce--EEEec
Q 025101          150 VGLASLVQEAYACCRKGWGK--TIVLG  174 (258)
Q Consensus       150 ~g~~~~~~~~~~~l~~~~G~--~v~~g  174 (258)
                      .+...+.+..-..+..+ -+  ++.++
T Consensus        72 lp~~~s~~~~~~l~~~g-~~~~VIDlS   97 (147)
T d1mb4a1          72 QGGSYTEKVYPALRQAG-WKGYWIDAA   97 (147)
T ss_dssp             SCHHHHHHHHHHHHHTT-CCSEEEESS
T ss_pred             cCchHHHHHhHHHHHcC-CceEEEeCC
Confidence            99887444443444443 23  66665

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.98  E-value=6.4  Score=26.84  Aligned_cols=88  Identities=16%  Similarity=0.086  Sum_probs=48.4

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCceEEcCCCCCCccHHHHHHHhcCCCCCEEEE
Q 025101           74 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  148 (258)
Q Consensus        74 ~vlI~G~-g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~d~v~d  148 (258)
                      +|.|.|+ |-+|+-+++++..+-.-++..+..+...-+.+.+    +-....+..     .+.. .+.+    +.|++|-
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~-----~~~~-~~~~----~~dvvf~   72 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSE-----FDPE-KVSK----NCDVLFT   72 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBC-----CCHH-HHHH----HCSEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccc-----cCHh-Hhcc----ccceEEE
Confidence            6889997 9999999999987643366655433322222221    111111211     1221 2222    5999999


Q ss_pred             ecCChhhHHHHHHhhhcCCceEEEec
Q 025101          149 CVGLASLVQEAYACCRKGWGKTIVLG  174 (258)
Q Consensus       149 ~~g~~~~~~~~~~~l~~~~G~~v~~g  174 (258)
                      +.+... ........ .+ -+++.++
T Consensus        73 a~p~~~-s~~~~~~~-~~-~~VIDlS   95 (176)
T d1vkna1          73 ALPAGA-SYDLVREL-KG-VKIIDLG   95 (176)
T ss_dssp             CCSTTH-HHHHHTTC-CS-CEEEESS
T ss_pred             ccccHH-HHHHHHhh-cc-ceEEecC
Confidence            999876 33333332 34 5666654

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=80.65  E-value=1.3  Score=30.98  Aligned_cols=41  Identities=15%  Similarity=0.101  Sum_probs=29.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025101           71 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  112 (258)
Q Consensus        71 ~g~~vlI~G~g~~G~~a~~l~~~~g~~~v~~~~~~~~~~~~~  112 (258)
                      +.++++|+|+|+.|..+..+++..++ +++.+-.+....+..
T Consensus         1 k~kkl~i~Gagg~~~~v~di~~~~~~-~~~~f~dd~~~~~~~   41 (193)
T d3bswa1           1 RTEKIYIYGASGHGLVCEDVAKNMGY-KECIFLDDFKGMKFE   41 (193)
T ss_dssp             CCSEEEEEC--CHHHHHHHHHHHHTC-CEEEECCCCTTGGGG
T ss_pred             CCCEEEEEcCCHhHHHHHHHHHhCCC-cEEEEEcCCCCcccc
Confidence            35789999999999999999999998 676665444444333

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=80.61  E-value=2.2  Score=28.21  Aligned_cols=62  Identities=8%  Similarity=-0.007  Sum_probs=46.0

Q ss_pred             hhhcCCCCCCEEEEEc-cCHHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhcCCceEEcCCC
Q 025101           64 WRTANVEVGSTVVIFG-LGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTEFVNSKN  125 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G-~g~~G~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~  125 (258)
                      .+.++++.-+.+++.- .-..-.+++..+|..+ ..++++...+++..+.++++|++.++++..
T Consensus        64 L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~  127 (153)
T d1id1a_          64 LKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQL  127 (153)
T ss_dssp             HHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHHH
T ss_pred             HHHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHHHCCCCEEECHHH
Confidence            4667777777777663 3445567777888653 338999888999999999999999987643

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=80.60  E-value=2  Score=27.60  Aligned_cols=61  Identities=21%  Similarity=0.161  Sum_probs=45.2

Q ss_pred             hhhcCCCCCCEEEEEc-cCHHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCCceEEcCC
Q 025101           64 WRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVTEFVNSK  124 (258)
Q Consensus        64 ~~~~~~~~g~~vlI~G-~g~~G~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~~~vi~~~  124 (258)
                      .+.+++..-+.+++.- .-..-..++..+|.++.. ++++...+++..+.+++.|++.++++.
T Consensus        55 L~~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p~  117 (129)
T d2fy8a1          55 LEKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPF  117 (129)
T ss_dssp             HHHTTCTTCSEEEECCSSHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHHHHHHCSEEECHH
T ss_pred             HHHhhhhcCcEEEEeccchhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHHHHCCCCEEEChH
Confidence            3567777777777663 345556777788876533 788888899999999999999988654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.57  E-value=0.49  Score=31.96  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=30.5

Q ss_pred             hhhhhhhhhhcCCCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 025101           57 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT   97 (258)
Q Consensus        57 ~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~a~~l~~~~g~~   97 (258)
                      .+|+-.|  ......|++|+|+|+|.+|.-++..+..+|..
T Consensus        16 ~~a~d~L--~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          16 LSYLDVL--RDKAPVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             EEHHHHH--TSCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             EEHHHHh--hCccccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            3444433  24567799999999999999999999999983