Citrus Sinensis ID: 025108

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MGTGSSKEDSSSQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAEVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPKNQALE
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHccEEcccccEEEEEEcccccEEEEEEccccEEEEccccccEEEEccccccccHHHHEEEEEEEEEEEEEEEEccccccccEEEEEEEEEEEccccccccccEEEEEEEcccEEEEEEEEEccccccEEEEEccEEEEcccccEEEEEEEEEEEccEEEcEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHccHHHHHHccccccccccccHHHHHHHHccccEcccccEEEEEEcccccEEEEEEcccEEEEEccccccEEEEcccccccccEEEEEEEEEEEEEEEEEEEccEcccccEEEEEEEEEEccccccccccEEEEEEEccccEEEEEEEEcccccccEEEEEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
mgtgsskedsssqlqpnekpsqnesqnfaiaakpadntketkvCEAKEAEVKLPHMYEAIVkdadspidkssvdklyDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRALLITWAEdnrfwiwtpvkessddIVDVAELVQVCWLEIHArldttklspgisYEVLFVIMLkdpaygwevpVSLRlllpngtkqehkenlivkprnqwieipvgefkstpenagEMEISMYEyeggkwkkgLVVKGviirpknqale
Flexible Loop (DISEMBL)
mgtgsskedsssqlqpnekpsqnesQNFAIAakpadntkeTKVCEAKEAEVKLPHMYEAIvkdadspidKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHarldttklspgISYEVLFVIMLKDPAYGWEVPVSLRLLLpngtkqehkenlivkprnqwieipvgefkstpenAGEMEISMYEYEGGKWKKGLVVKGVIIRPKNQALE
Low Complexity Region (SEG)
MGTGSSKEDSSSQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAEVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYEYEggkwkkglvvkgvIIRPKNQALE
Disordered region (IsUnstruct)
***************************************************KLPHMYEAIVKD****I*KSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVG*******************************************
Disordered Region (DISOPRED)
***********************ESQNFAIAAKPADNTKETKVCEAKEAEVKLPHMYEAIV***************YDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPN**********IVKPRNQWIEIPVGEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVII*PKN****
Disordered Region (DISEMBL)
************************SQNFAIAAKPADNTKETKVCEAKEAEVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPKNQALE
Disordered Region (DISPRO)
***************PNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAEVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPKNQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTGSSKEDSSSQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAEVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPKNQALE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
O81865	246	Protein PHLOEM PROTEIN 2-	yes	no	0.918	0.959	0.459	2e-51
Q9C8U9	165	Uncharacterized protein P	no	no	0.579	0.903	0.431	2e-33
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.622	0.389	0.397	5e-29
O81866	194	Protein PHLOEM PROTEIN 2-	no	no	0.478	0.634	0.475	8e-28
O81025	463	Putative protein PHLOEM P	no	no	0.575	0.319	0.394	4e-24
Q9FHE5	332	Uncharacterized protein P	no	no	0.614	0.475	0.371	1e-22
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.645	0.423	0.348	4e-19
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.844	0.678	0.297	5e-19
Q9ZVQ6	272	F-box protein PP2-B10 OS=	no	no	0.836	0.790	0.311	2e-18
Q9FLU7	251	Putative F-box protein PP	no	no	0.723	0.741	0.300	4e-18

>sp|O81865|P2A01_ARATH Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana GN=PP2A1 PE=2 SV=1

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/244 (45%), Positives = 155/244 (63%), Gaps = 8/244 (3%)

Query: 12  SQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAEVKLPHMYEAIVKDADSPIDKS 71
           S+L PN K  +N+   + I  +             K + VK PH  EAI++DAD PI  S
Sbjct: 7   SELLPN-KMFRNQDSKYLIPVQ--KEAPPVTTLPMKASTVKSPHNCEAILRDADPPISLS 63

Query: 72  SVDKLYDQLYYGVFLNQKSK-RYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKES 130
           SV+ L +QL  GVFL  K + +YWV++++  N FMLF++ L ITW++D  +W W   KES
Sbjct: 64  SVN-LSEQLRSGVFLKPKKQIKYWVDERNS-NCFMLFAKNLSITWSDDVNYWTWFTEKES 121

Query: 131 SDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPN 190
            ++ V+   L  VCWL+I  + DT  L+PGI YEV+F + L+DPAYGW+ PV+L+L+LPN
Sbjct: 122 PNENVEAVGLKNVCWLDITGKFDTRNLTPGIVYEVVFKVKLEDPAYGWDTPVNLKLVLPN 181

Query: 191 GTK--QEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVI 248
           G +  QE K +L   PR +W+++ VGEF      AGE+  SMYE+  G WKKGL +KGV 
Sbjct: 182 GKEKPQEKKVSLRELPRYKWVDVRVGEFVPEKSAAGEITFSMYEHAAGVWKKGLSLKGVA 241

Query: 249 IRPK 252
           IRPK
Sbjct: 242 IRPK 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8U9|P2A04_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 OS=Arabidopsis thaliana GN=PP2A4 PE=4 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 105/153 (68%), Gaps = 4/153 (2%)

Query: 105 MLFSRALLITWAEDNRFWIWTPVKE--SSDDIVDVAELVQVCWLEIHARLDTTKLSPGIS 162
           M+++R L I W++ + +W W P++   SS+ +VD A L  VCWL+++ + DT +L+   +
Sbjct: 13  MIYARDLSIAWSDKDEYWSWLPLRYDISSEKLVDAAVLEAVCWLDVNGKFDTRELTLETT 72

Query: 163 YEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPR--NQWIEIPVGEFKSTP 220
           YEV++V+ L+D A GW +PV+L+L LP+G K+  + ++ +K     +WI+I  GEF ++P
Sbjct: 73  YEVVYVVKLEDTASGWNIPVNLKLTLPDGKKRPQERSMCLKEHIGKRWIDISAGEFVTSP 132

Query: 221 ENAGEMEISMYEYEGGKWKKGLVVKGVIIRPKN 253
           +NAGE+  SMYE +   WK+GL VK V IRPKN
Sbjct: 133 DNAGEISFSMYETKSCCWKRGLFVKCVEIRPKN 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  128 bits (321), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 102/166 (61%), Gaps = 6/166 (3%)

Query: 92  RYWVE-KKSGCNSFMLFSRALLITWAEDNRFWIWTPV--KESSDDIVDVAELVQVCWLEI 148
           ++WV+  +   N FM+ +R L I W+ED+  W W P+  + S++ ++++A L    WL++
Sbjct: 246 KFWVDLTRPKGNVFMIDARDLSIAWSEDSNHWTWLPLPNQNSNESVMEIAFLKSASWLDV 305

Query: 149 HARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNG--TKQEHKENLIVKPRN 206
             + DT  L+P   YEV+FV+ L +  + WE  V L+L LPN     QE   ++     +
Sbjct: 306 AGKFDTRYLTPRTRYEVVFVVKL-EYTFEWETLVKLKLDLPNTWEKPQEQSVDMFDYISD 364

Query: 207 QWIEIPVGEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPK 252
           QW++IPVGEF ++ +N GE+  +MYE+E   WK GL VKGV IRPK
Sbjct: 365 QWLDIPVGEFTTSKKNVGEISFAMYEHECQLWKSGLFVKGVTIRPK 410

Arabidopsis thaliana (taxid: 3702)

>sp|O81866|P2A02_ARATH Protein PHLOEM PROTEIN 2-LIKE A2 OS=Arabidopsis thaliana GN=PP2A2 PE=2 SV=1

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 87/124 (70%), Gaps = 1/124 (0%)

Query: 131 SDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPN 190
           SD   +VA++ +V WLE+  + +T KL+P   YEV+FV+ L D A GW+  V+ +L+LP 
Sbjct: 71  SDVRTEVAKMERVAWLEVVGKFETEKLTPNSLYEVVFVVKLIDSAKGWDFRVNFKLVLPT 130

Query: 191 GTKQEHKENLIVKPRNQWIEIPVGEFKSTPEN-AGEMEISMYEYEGGKWKKGLVVKGVII 249
           G  +E +EN+ +  RN+W+EIP GEF  +PE+ +G++E SM E +  +WK GL+VKGV I
Sbjct: 131 GETKERRENVNLLERNKWVEIPAGEFMISPEHLSGKIEFSMLEVKSDQWKSGLIVKGVAI 190

Query: 250 RPKN 253
           RPKN
Sbjct: 191 RPKN 194

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 86/157 (54%), Gaps = 9/157 (5%)

Query: 105 MLFSRALLITWAEDNRFWIWTPVKE--SSDDIVDVAELVQVCWLEIHARLDTTKLSPGIS 162
           M+ +R L I W+     W W  +    SS+  V+VAEL+ V W ++   LDTT+++P   
Sbjct: 308 MICARDLNIEWSHSEEHWKWVNLDHNISSNTFVEVAELLGVYWFDVSGSLDTTEMAPWTH 367

Query: 163 YEVLFVIMLKDPAYGWEVPVSLRLLLPN------GTKQEHKENLIVKPRNQWIEIPVGEF 216
           YEVLFV+ LKD A+ W   V + L   N      GT QE   ++       W+ I  GEF
Sbjct: 368 YEVLFVVNLKDSAFKWNAAVKMNLFYINSRPGGPGT-QERAVDMRQHIGKGWVTIHAGEF 426

Query: 217 KSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPKN 253
            +TPEN G +   M E + G  + GL+VKGV+IRP N
Sbjct: 427 ITTPENVGLIGFRMSEVDSGDNRGGLIVKGVLIRPIN 463

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE5|P2A07_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis thaliana GN=PP2A7 PE=4 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 6/164 (3%)

Query: 94  WVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDI-VDVAELVQVCWLEIHARL 152
           + EK++    FM+ +R L ++ +E    W W+ + E+ +D  ++VA L +V WL +    
Sbjct: 167 YREKEANSKCFMVPARKLQMSHSEKLINWTWSSIYETPNDAAIEVAMLNEVHWLHMSGNF 226

Query: 153 DTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRL--LLPNGTK--QEHKENLIVKPRNQW 208
            T  L+PG  YEV+F++ L D + GWE PV+L L  + P+GT+  QE + +L       W
Sbjct: 227 HTRNLTPGTKYEVVFLVSLDDTSSGWEQPVNLNLKVINPDGTESLQERETSLECHIGENW 286

Query: 209 IEIPVGEFKSTPEN-AGEMEISMYEYEGGKWKKGLVVKGVIIRP 251
           ++I  G   + P N A +M  +MY+Y     K GLVVKGV IRP
Sbjct: 287 VDIQAGVLVAPPRNAAAKMTFTMYQYVTSDRKSGLVVKGVAIRP 330

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 6/172 (3%)

Query: 88  QKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDI-VDVAELVQVCWL 146
           +K +R   ++ S     M+ +R L IT +E  + W W+ + E+ +   +++A L +V WL
Sbjct: 221 RKPEREASQEGSSVVPSMVPARDLDITHSEKPQKWTWSTINEAPNSAEIEIATLNKVYWL 280

Query: 147 EIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLL----PNGTKQEHKENLIV 202
           +I   + T  L+PG  YE +FV+ L++ A GWE PV+L+L +     +  + +  ENL  
Sbjct: 281 KIVGTITTENLTPGAKYEAVFVVKLENNASGWEQPVNLKLKVVQHDGDDDRVDRTENLND 340

Query: 203 KPRNQWIEIPVGEFKSTPENA-GEMEISMYEYEGGKWKKGLVVKGVIIRPKN 253
                W++I  G F   P+     +  +MY+YE    KKGLVVKGV IRP N
Sbjct: 341 YIGQNWVDILAGVFVVPPKTTPATIIFTMYQYEDKYKKKGLVVKGVAIRPTN 392

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 107/242 (44%), Gaps = 25/242 (10%)

Query: 29  AIAAKPADNTKETKVCEAKEAEVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQ 88
           A  A     T E+ V      +  LP  YE++V  + S +  S  +  +   +  V +  
Sbjct: 81  ACVAASVSKTFESAVSSDCVWDKFLPPEYESLV--SRSRVFASKKELYFALCHNPVLIED 138

Query: 89  KSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEI 148
             K +W+EK SG    ML S+ L ITW     +W W  + ES  +   +AEL+ VCW EI
Sbjct: 139 GKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFN--KIAELLDVCWFEI 196

Query: 149 HARLDTTKLSPGISYEVLFVIMLKD--PAYGWEVPVSLRLLL--------------PNGT 192
             +     LSPG  Y    V   KD  P  G  +PV + L L              P   
Sbjct: 197 RGKTSARVLSPGTRYSAYIVFKTKDRCPGLG-HLPVEVGLGLVGQESSKRFIYFIGPRDR 255

Query: 193 KQEHKENLIVKPRNQ---WIEIPVGEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVII 249
           +   +   + KP  +   W+E  +GEF +  E   E+E S+ E +   WK GL+++G+  
Sbjct: 256 RGRRETRDVTKPDQREDGWMEAELGEFFNE-ERCDEIEFSVIEIKSPSWKSGLIIQGIEF 314

Query: 250 RP 251
           RP
Sbjct: 315 RP 316

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 113/241 (46%), Gaps = 26/241 (10%)

Query: 34  PADNTKETKVCEAKEAEVKLPHMYEAIV-KDADSPIDKSSVDKLYDQLYYG-----VFLN 87
           P D      V +  E+ VK   ++E  +  D +S I  S V     +LY+      V  +
Sbjct: 31  PRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSSKKELYFSLCNDPVLFD 90

Query: 88  QKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLE 147
              K  W+EK SG    ML +  L I W ++ ++W W P+ ES  +   VA+L  VCW E
Sbjct: 91  DDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFE--KVAKLRDVCWFE 148

Query: 148 IHARLDTTKLSPGISYEVLFVIMLKDPAYGWE-------VPV-----SLRLLLPNGTKQE 195
           I  R +T  LSP   Y    V    D  YG++       V V     S RL+  +   + 
Sbjct: 149 IRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVVGQEPSRRLICFSEAIRR 208

Query: 196 HKENLIVKPRNQ---WIEIPVGEF--KSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIR 250
            + N +VKP+ +   W+EI +GEF       +  E+E+S  E +    K GL+++G+ IR
Sbjct: 209 GRRN-VVKPKQREDGWMEIELGEFFNDGGIMDNDEIEMSALETKQLNRKCGLIIQGIEIR 267

Query: 251 P 251
           P
Sbjct: 268 P 268

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 113/216 (52%), Gaps = 30/216 (13%)

Query: 53  LPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSK-RYWVEKKSGCNSFMLFSRAL 111
           LP  Y   +   D+ + + S  +L+ +      L +  +  +W+EK+SG   +ML +R L
Sbjct: 47  LPSDYRMYI---DNSLSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKL 103

Query: 112 LITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIML 171
            I W +   FWIW  + +S  +  +VA L+ VCW EI  ++ T+ LS   +Y    V   
Sbjct: 104 DIVWVDSPEFWIWVSIPDSRFE--EVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKE 161

Query: 172 KD-PAYGWE-VPVSL-------------RLLLPNGTKQEHKENLIVKPRNQWIEIPVGEF 216
           ++  ++G+E +P+ +             R+ L +GT QE +E       + W+EI +GE+
Sbjct: 162 QEMGSFGFESLPLEVSFRSTRTEVYNNRRVFLKSGT-QESRE-------DGWLEIELGEY 213

Query: 217 KSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPK 252
               ++  E+E+S+ E   G WK G++V+G+ IRPK
Sbjct: 214 YVGFDDE-EIEMSVLETREGGWKGGIIVQGIEIRPK 248

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
297737969	239	unnamed protein product [Vitis vinifera]	0.929	1.0	0.581	2e-78
224115456	280	predicted protein [Populus trichocarpa]	0.984	0.903	0.532	2e-77
118486385	280	unknown [Populus trichocarpa]	0.984	0.903	0.528	5e-77
388506738	314	unknown [Lotus japonicus]	0.844	0.691	0.589	1e-74
357475181	293	F-box protein PP2-B10 [Medicago truncatu	0.863	0.757	0.578	3e-73
124359660	290	Galactose-binding like [Medicago truncat	0.778	0.689	0.605	1e-68
449455417	257	PREDICTED: protein PHLOEM PROTEIN 2-LIKE	0.789	0.789	0.565	1e-65
363807724	209	uncharacterized protein LOC100799048 [Gl	0.766	0.942	0.564	3e-61
255566275	213	ATPP2-A2, putative [Ricinus communis] gi	0.750	0.906	0.555	5e-60
115434638	244	Os01g0158400 [Oryza sativa Japonica Grou	0.754	0.795	0.509	2e-55

>gi|297737969|emb|CBI27170.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/253 (58%), Positives = 190/253 (75%), Gaps = 14/253 (5%)

Query: 1   MGTGSSKEDSSSQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAEVKLPHMYEAI 60
           MG+  S+++SS   Q +EKP +  SQ   I      NTK  +  +AK+    LP+ Y AI
Sbjct: 1   MGSSWSQDESS---QLSEKPGETLSQTLDI------NTKAKETIQAKQ----LPYNYAAI 47

Query: 61  VKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRALLITWAEDNR 120
           +KDADSPI++SS++KL DQLY GV LN   K++W+EKK   N FM+F+R L ITWAED+R
Sbjct: 48  MKDADSPINESSIEKLNDQLYAGVLLNGNRKKFWMEKKFN-NCFMIFARNLSITWAEDSR 106

Query: 121 FWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEV 180
           +W W  +KE+SD  VDVAEL+ VCWLE+H + +T KLSPGI Y+V FV+M+KDPAYGW V
Sbjct: 107 YWHWLKIKETSDVFVDVAELINVCWLEVHGKFETAKLSPGIMYKVAFVVMMKDPAYGWGV 166

Query: 181 PVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYEYEGGKWKK 240
           PV+L+L LP+G  QEHKENL  KP+ QWIEIPVG+F+++ EN GE+E S++EYEGG WK 
Sbjct: 167 PVNLKLALPDGNTQEHKENLREKPKGQWIEIPVGQFQTSAENIGEIEFSLFEYEGGDWKS 226

Query: 241 GLVVKGVIIRPKN 253
           GLVVKGVII+PKN
Sbjct: 227 GLVVKGVIIQPKN 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115456|ref|XP_002332139.1| predicted protein [Populus trichocarpa] gi|222875189|gb|EEF12320.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 149/280 (53%), Positives = 187/280 (66%), Gaps = 27/280 (9%)

Query: 1   MGTGSSKEDSSSQLQPNEKPSQN--------------------------ESQNFAIAAKP 34
           MG GSS +++S   Q   +PS+                           E++   I  + 
Sbjct: 1   MGAGSSHDEASESQQTGGEPSRTRPQYNEETSTEAKQSETKLKTVEKAPEAKPLVIRQEK 60

Query: 35  ADNTKETKVCEAKEA-EVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRY 93
           A + K     +AK   EVKLPH  EAI++DADSP+D+SSVDKLYDQL  GVFLNQK K+Y
Sbjct: 61  AADVKPLHDAKAKTVKEVKLPHNCEAILRDADSPVDRSSVDKLYDQLSTGVFLNQKRKKY 120

Query: 94  WVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLD 153
           WVEKK   N FMLF++ L ITW  D R+W W  + ES D  VDVAEL+ VCWLEI+ + +
Sbjct: 121 WVEKKCYRNCFMLFAKDLSITWGGDARYWKWPSICESGDVTVDVAELLDVCWLEIYGKFN 180

Query: 154 TTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPV 213
           T  LSPGI YEV+FVI LKDPAYGW VPV++ L+LPNG KQE KE L  KPR QWIE+PV
Sbjct: 181 TKMLSPGILYEVVFVIKLKDPAYGWGVPVNVSLVLPNGYKQERKEKLQTKPREQWIEVPV 240

Query: 214 GEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPKN 253
           GEF ++PEN GE++  M+EY+GG+WK+GLV+KG+ IRPK 
Sbjct: 241 GEFITSPENVGEIQFGMHEYDGGEWKRGLVIKGIAIRPKT 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486385|gb|ABK95033.1| unknown [Populus trichocarpa]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 148/280 (52%), Positives = 186/280 (66%), Gaps = 27/280 (9%)

Query: 1   MGTGSSKEDSSSQLQPNEKPSQN--------------------------ESQNFAIAAKP 34
           MG GSS +++S   Q   +PS+                           E++   I  + 
Sbjct: 1   MGAGSSHDEASESQQTGGEPSRTRPQYNEETSTEAKQSETKLKTVEKAPEAKPLVIRQEK 60

Query: 35  ADNTKETKVCEAKEA-EVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRY 93
           A + K     +AK   EVKLPH  EAI++DADSP+D+SSVDKLYDQL  GVFLNQK K+Y
Sbjct: 61  AADVKPLHDAKAKTVKEVKLPHNCEAILRDADSPVDRSSVDKLYDQLSTGVFLNQKRKKY 120

Query: 94  WVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLD 153
           WVEKK   N FMLF++ L ITW  D R+W W  + ES D  VDVAEL+ VCWLEI+ + +
Sbjct: 121 WVEKKCYRNCFMLFAKDLSITWGGDTRYWKWPSICESGDVTVDVAELLDVCWLEIYGKFN 180

Query: 154 TTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPV 213
           T  LSPGI YEV+FVI LKDPAYGW VPV++ L+LPNG KQE KE L  KPR QWIE+PV
Sbjct: 181 TKMLSPGILYEVVFVIKLKDPAYGWGVPVNVSLVLPNGYKQERKEKLQTKPREQWIEVPV 240

Query: 214 GEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPKN 253
           GE  ++PEN GE++  M+EY+GG+WK+GLV+KG+ IRPK 
Sbjct: 241 GELITSPENVGEIQFGMHEYDGGEWKRGLVIKGIAIRPKT 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506738|gb|AFK41435.1| unknown [Lotus japonicus]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 128/217 (58%), Positives = 165/217 (76%)

Query: 37  NTKETKVCEAKEAEVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRYWVE 96
           N  ++ +      E+  PH YE I+K ADSPIDKSS +KL DQLY GVFL+ K+K+YW+E
Sbjct: 98  NENQSMISVKPRKELNFPHNYEHILKGADSPIDKSSREKLCDQLYAGVFLDHKTKKYWLE 157

Query: 97  KKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTK 156
           + S  N FML++RAL ITWAED  +W W P  + S  +++VAEL +VCWLE+H + DT K
Sbjct: 158 RNSNSNCFMLYARALSITWAEDQNYWKWVPQNDESGTMIEVAELNRVCWLEVHGKFDTRK 217

Query: 157 LSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVGEF 216
           LSPGI Y V F++MLKDPA GWE+PV++RL+LP G KQ+H ENL+ K R +WIEIPVGEF
Sbjct: 218 LSPGILYNVSFIVMLKDPAQGWEIPVNVRLVLPGGKKQQHNENLMDKLRARWIEIPVGEF 277

Query: 217 KSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPKN 253
            ++ ++ GEMEISMYEYEGG WK GLV+KG+ I+PKN
Sbjct: 278 VASEKDGGEMEISMYEYEGGMWKMGLVIKGISIKPKN 314

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475181|ref|XP_003607876.1| F-box protein PP2-B10 [Medicago truncatula] gi|355508931|gb|AES90073.1| F-box protein PP2-B10 [Medicago truncatula] gi|388501714|gb|AFK38923.1| unknown [Medicago truncatula]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/228 (57%), Positives = 170/228 (74%), Gaps = 6/228 (2%)

Query: 31  AAKPADNTKETKVCEAKEA------EVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGV 84
           + K   N+   K  E + A      E+ L H YE I+KDADSP+DKSS +K+ DQLY GV
Sbjct: 63  SKKAVQNSTVVKCDETQSATKPLIKELSLSHNYEHILKDADSPVDKSSREKMCDQLYAGV 122

Query: 85  FLNQKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVC 144
           FL+ K+K+YWVEK S  N FML++RAL ITWAED  +W W   K+ S+   +VAEL +VC
Sbjct: 123 FLHHKTKKYWVEKNSKANCFMLYARALSITWAEDPNYWKWIQQKDVSEGTTEVAELKRVC 182

Query: 145 WLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKP 204
           WLE+H + DT KLSPGI Y+V F+IMLKDPA GWE+PV++RL+LP G KQ+HKENL+ K 
Sbjct: 183 WLEVHGKFDTRKLSPGILYQVSFIIMLKDPAQGWELPVNVRLVLPGGKKQQHKENLMEKL 242

Query: 205 RNQWIEIPVGEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPK 252
           R +WIE+PVGEF  + ++ GEMEISM+EYEGG WK+GLV+KG+ I+PK
Sbjct: 243 RARWIEVPVGEFVVSEKDGGEMEISMFEYEGGMWKQGLVIKGIAIKPK 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359660|gb|ABN06032.1| Galactose-binding like [Medicago truncatula]

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/203 (60%), Positives = 158/203 (77%), Gaps = 3/203 (1%)

Query: 50  EVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSR 109
           E+ L H YE I+KDADSP+DKSS +K+ DQLY GVFL+ K+K    +K S  N FML++R
Sbjct: 88  ELSLSHNYEHILKDADSPVDKSSREKMCDQLYAGVFLHHKTK---AKKNSKANCFMLYAR 144

Query: 110 ALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVI 169
           AL ITWAED  +W W   K+ S+   +VAEL +VCWLE+H + DT KLSPGI Y+V F+I
Sbjct: 145 ALSITWAEDPNYWKWIQQKDVSEGTTEVAELKRVCWLEVHGKFDTRKLSPGILYQVSFII 204

Query: 170 MLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEIS 229
           MLKDPA GWE+PV++RL+LP G KQ+HKENL+ K R +WIE+PVGEF  + ++ GEMEIS
Sbjct: 205 MLKDPAQGWELPVNVRLVLPGGKKQQHKENLMEKLRARWIEVPVGEFVVSEKDGGEMEIS 264

Query: 230 MYEYEGGKWKKGLVVKGVIIRPK 252
           M+EYEGG WK+GLV+KG+ I+PK
Sbjct: 265 MFEYEGGMWKQGLVIKGIAIKPK 287

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455417|ref|XP_004145449.1| PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1-like [Cucumis sativus]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/205 (56%), Positives = 161/205 (78%), Gaps = 2/205 (0%)

Query: 50  EVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSR 109
           E+K+ H  E I+KDAD P+D+SS+DKLY+QLY G+FLN+++K+YW++KK   N FMLF R
Sbjct: 54  EMKVGHGIEDILKDADLPVDRSSLDKLYEQLYVGIFLNKRTKKYWLDKKLKSNCFMLFPR 113

Query: 110 ALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVI 169
           AL ITWAE+N++W W  +++SS+ I +V EL+ VCWLEIH ++ T +LSPGI YE  F +
Sbjct: 114 ALSITWAEENKYWRWRSLQDSSNTI-EVVELMNVCWLEIHGKMKTCELSPGICYEAAFEV 172

Query: 170 MLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVGEFKSTP-ENAGEMEI 228
           M+KDP+YGW++PV++RL  P+G+KQEHKENL  +PR +W EIP+G+F     E  GE++ 
Sbjct: 173 MIKDPSYGWDIPVNIRLQKPDGSKQEHKENLEQRPRGRWFEIPIGDFIVLDHEKEGEIDF 232

Query: 229 SMYEYEGGKWKKGLVVKGVIIRPKN 253
           SM+EYEGG WKKG+V+KG+ IR K 
Sbjct: 233 SMFEYEGGMWKKGIVLKGLSIRSKG 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807724|ref|NP_001242170.1| uncharacterized protein LOC100799048 [Glycine max] gi|255640828|gb|ACU20697.1| unknown [Glycine max]

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/202 (56%), Positives = 153/202 (75%), Gaps = 5/202 (2%)

Query: 53  LPHMYEAIVK-DADSPIDKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRAL 111
           +PH YE I+K +ADSP+DKS    L D+LY GVFL+ K+K+YWVEKKS  N FML++RAL
Sbjct: 12  IPHNYEHILKSNADSPVDKS----LLDKLYAGVFLDHKTKKYWVEKKSNGNCFMLYARAL 67

Query: 112 LITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIML 171
            ITWAE+  +W W   KE S  ++++A+L  VCWLE++ +  T  LSPGI Y+V F++ML
Sbjct: 68  SITWAENPNYWKWVQHKEESGSMIELAKLKTVCWLEVNGKFGTGMLSPGILYQVSFIVML 127

Query: 172 KDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMY 231
           KD A GWE+P+++RL+LP G KQ+H+ENL+ K R  WIEI VGEF ++ ++ GEMEISMY
Sbjct: 128 KDSAQGWELPINVRLVLPGGKKQQHEENLMEKSRESWIEILVGEFVASEKDVGEMEISMY 187

Query: 232 EYEGGKWKKGLVVKGVIIRPKN 253
           E+E G WK GLV++ V I+PKN
Sbjct: 188 EHESGMWKTGLVIESVAIKPKN 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566275|ref|XP_002524124.1| ATPP2-A2, putative [Ricinus communis] gi|223536591|gb|EEF38235.1| ATPP2-A2, putative [Ricinus communis]

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 126/227 (55%), Positives = 155/227 (68%), Gaps = 34/227 (14%)

Query: 32  AKPADNTKETKVCEAKEAE--VKLPHMYEAIVKDAD-SPIDKSSVDK-LYDQLYYGVFLN 87
           AK ++ T+E +  E +     VKLP+ YE+I+++AD +  D S+ DK LYDQL +GVFLN
Sbjct: 11  AKESEYTEEKREVENENDAQVVKLPYNYESILREADPTSDDTSATDKQLYDQLCHGVFLN 70

Query: 88  QKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLE 147
           QK       KK+   +F                          S+  VDVAEL+ VCWLE
Sbjct: 71  QK-------KKAIHKNFSF-----------------------DSNVFVDVAELLNVCWLE 100

Query: 148 IHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQ 207
           IH R DT KLSPGI YE +F+IMLKDPAYGWEVPV+LRL LPNGTKQEHKE ++ KPR Q
Sbjct: 101 IHGRFDTAKLSPGILYEAVFLIMLKDPAYGWEVPVNLRLTLPNGTKQEHKEYVVTKPRAQ 160

Query: 208 WIEIPVGEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPKNQ 254
           WIE+P GEF S+P+N G +EISMY+YEGGKWK+GLVVKGV +RPKNQ
Sbjct: 161 WIEVPAGEFVSSPDNIGRIEISMYDYEGGKWKRGLVVKGVTLRPKNQ 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115434638|ref|NP_001042077.1| Os01g0158400 [Oryza sativa Japonica Group] gi|54290191|dbj|BAD61079.1| putative lectin 2 [Oryza sativa Japonica Group] gi|113531608|dbj|BAF03991.1| Os01g0158400 [Oryza sativa Japonica Group] gi|215686620|dbj|BAG88873.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/204 (50%), Positives = 142/204 (69%), Gaps = 10/204 (4%)

Query: 55  HMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRALLIT 114
           HM++ IV + D      +   L DQ+Y G+FL  K+K+YWV++++  N FMLF R L IT
Sbjct: 46  HMFQEIVAEKDF-----TASSLEDQIYTGIFLAGKTKKYWVDERTRNNCFMLFPRGLSIT 100

Query: 115 WAEDNRFWIWTPVKESSDDI-----VDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVI 169
           W+ED RFW W P+KE S D      ++V  L  VCWLEIH +L+ + L+PG++YEVLF +
Sbjct: 101 WSEDPRFWTWKPLKEGSSDADTDTQIEVPSLQNVCWLEIHGKLERSYLTPGVTYEVLFEV 160

Query: 170 MLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEIS 229
           ML DPAYGW VPV+L+L  P+GT Q+ KENL  K R +W+E+ VGE K+     GE+EIS
Sbjct: 161 MLIDPAYGWSVPVNLQLKFPDGTVQQRKENLEEKIRMKWLELKVGEVKTQQGQKGEIEIS 220

Query: 230 MYEYEGGKWKKGLVVKGVIIRPKN 253
           M+EY+GG WK+GL++KG+ I PK 
Sbjct: 221 MFEYDGGLWKRGLLIKGIKILPKQ 244

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2133945	246	PP2-A1 "phloem protein 2-A1" [	0.918	0.959	0.422	6.2e-46
TAIR|locus:2203837	165	PP2-A4 "phloem protein 2-A4" [	0.579	0.903	0.385	1.2e-28
TAIR|locus:2206255	411	PP2-A5 "phloem protein 2 A5" [	0.618	0.386	0.353	7.6e-25
TAIR|locus:2153222	332	PP2-A7 "phloem protein 2-A7" [	0.607	0.469	0.327	4e-19
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.945	0.524	0.276	6.6e-19
TAIR|locus:505006110	289	PP2-B15 "phloem protein 2-B15"	0.544	0.484	0.312	4.9e-17
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.770	0.618	0.291	1.8e-16
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.700	0.661	0.308	2.3e-16
TAIR|locus:2153217	392	PP2-A6 "phloem protein 2-A6" [	0.645	0.423	0.308	2.8e-15
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.789	0.654	0.258	1.1e-14

TAIR|locus:2133945 PP2-A1 "phloem protein 2-A1" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 103/244 (42%), Positives = 145/244 (59%)

Query:    12 SQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAEVKLPHMYEAIVKDADSPIDKS 71
             S+L PN K  +N+   + I  +             K + VK PH  EAI++DAD PI  S
Sbjct:     7 SELLPN-KMFRNQDSKYLIPVQK--EAPPVTTLPMKASTVKSPHNCEAILRDADPPISLS 63

Query:    72 SVDKLYDQLYYGVFLNQKSK-RYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKES 130
             SV+ L +QL  GVFL  K + +YWV++++  N FMLF++ L ITW++D  +W W   KES
Sbjct:    64 SVN-LSEQLRSGVFLKPKKQIKYWVDERNS-NCFMLFAKNLSITWSDDVNYWTWFTEKES 121

Query:   131 SDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPN 190
              ++ V+   L  VCWL+I  + DT  L+PGI YEV+F + L+DPAYGW+ PV+L+L+LPN
Sbjct:   122 PNENVEAVGLKNVCWLDITGKFDTRNLTPGIVYEVVFKVKLEDPAYGWDTPVNLKLVLPN 181

Query:   191 GTK--QEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYEYEXXXXXXXXXXXXXI 248
             G +  QE K +L   PR +W+++ VGEF      AGE+  SMYE+               
Sbjct:   182 GKEKPQEKKVSLRELPRYKWVDVRVGEFVPEKSAAGEITFSMYEHAAGVWKKGLSLKGVA 241

Query:   249 IRPK 252
             IRPK
Sbjct:   242 IRPK 245

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0009625 "response to insect" evidence=IDA

GO:0043394 "proteoglycan binding" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2203837 PP2-A4 "phloem protein 2-A4" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 59/153 (38%), Positives = 97/153 (63%)

Query:   105 MLFSRALLITWAEDNRFWIWTPVKE--SSDDIVDVAELVQVCWLEIHARLDTTKLSPGIS 162
             M+++R L I W++ + +W W P++   SS+ +VD A L  VCWL+++ + DT +L+   +
Sbjct:    13 MIYARDLSIAWSDKDEYWSWLPLRYDISSEKLVDAAVLEAVCWLDVNGKFDTRELTLETT 72

Query:   163 YEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPR--NQWIEIPVGEFKSTP 220
             YEV++V+ L+D A GW +PV+L+L LP+G K+  + ++ +K     +WI+I  GEF ++P
Sbjct:    73 YEVVYVVKLEDTASGWNIPVNLKLTLPDGKKRPQERSMCLKEHIGKRWIDISAGEFVTSP 132

Query:   221 ENAGEMEISMYEYEXXXXXXXXXXXXXIIRPKN 253
             +NAGE+  SMYE +              IRPKN
Sbjct:   133 DNAGEISFSMYETKSCCWKRGLFVKCVEIRPKN 165

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2206255 PP2-A5 "phloem protein 2 A5" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 59/167 (35%), Positives = 96/167 (57%)

Query:    92 RYWVE--KKSGCNSFMLFSRALLITWAEDNRFWIWTPV--KESSDDIVDVAELVQVCWLE 147
             ++WV+  +  G N FM+ +R L I W+ED+  W W P+  + S++ ++++A L    WL+
Sbjct:   246 KFWVDLTRPKG-NVFMIDARDLSIAWSEDSNHWTWLPLPNQNSNESVMEIAFLKSASWLD 304

Query:   148 IHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTK--QEHKENLIVKPR 205
             +  + DT  L+P   YEV+FV+ L +  + WE  V L+L LPN  +  QE   ++     
Sbjct:   305 VAGKFDTRYLTPRTRYEVVFVVKL-EYTFEWETLVKLKLDLPNTWEKPQEQSVDMFDYIS 363

Query:   206 NQWIEIPVGEFKSTPENAGEMEISMYEYEXXXXXXXXXXXXXIIRPK 252
             +QW++IPVGEF ++ +N GE+  +MYE+E              IRPK
Sbjct:   364 DQWLDIPVGEFTTSKKNVGEISFAMYEHECQLWKSGLFVKGVTIRPK 410

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2153222 PP2-A7 "phloem protein 2-A7" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 53/162 (32%), Positives = 85/162 (52%)

Query:    96 EKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDI-VDVAELVQVCWLEIHARLDT 154
             EK++    FM+ +R L ++ +E    W W+ + E+ +D  ++VA L +V WL +     T
Sbjct:   169 EKEANSKCFMVPARKLQMSHSEKLINWTWSSIYETPNDAAIEVAMLNEVHWLHMSGNFHT 228

Query:   155 TKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLL--PNGTK--QEHKENLIVKPRNQWIE 210
               L+PG  YEV+F++ L D + GWE PV+L L +  P+GT+  QE + +L       W++
Sbjct:   229 RNLTPGTKYEVVFLVSLDDTSSGWEQPVNLNLKVINPDGTESLQERETSLECHIGENWVD 288

Query:   211 IPVGEFKSTPENAG-EMEISMYEYEXXXXXXXXXXXXXIIRP 251
             I  G   + P NA  +M  +MY+Y               IRP
Sbjct:   289 IQAGVLVAPPRNAAAKMTFTMYQYVTSDRKSGLVVKGVAIRP 330

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 6.6e-19, P = 6.6e-19
 Identities = 71/257 (27%), Positives = 121/257 (47%)

Query:     7 KEDSSSQLQPNEKPSQNESQNFAIAAKPADNT-KETKVCEAKEAEVK-LPHMYEAIVKDA 64
             KE++  +L+  E+  +++++  A  A+   N   E +  + +EA+ K L    EA  K  
Sbjct:   211 KEENDERLREEERVIESKNRAEAELAEMQQNLLMEKEKLQMEEAKNKQLIAQAEANEKLM 270

Query:    65 DSPIDKSSVD-KLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWI 123
             +    K+  + +L   +   + + ++  +  + + +     M+ +R L I W+     W 
Sbjct:   271 EQERAKNRAETELAAVMVEKLQMEEEKNKQLIAQANR----MICARDLNIEWSHSEEHWK 326

Query:   124 WTPVKE--SSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVP 181
             W  +    SS+  V+VAEL+ V W ++   LDTT+++P   YEVLFV+ LKD A+ W   
Sbjct:   327 WVNLDHNISSNTFVEVAELLGVYWFDVSGSLDTTEMAPWTHYEVLFVVNLKDSAFKWNAA 386

Query:   182 VSLRLLL----PNGT-KQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYEYEXX 236
             V + L      P G   QE   ++       W+ I  GEF +TPEN G +   M E +  
Sbjct:   387 VKMNLFYINSRPGGPGTQERAVDMRQHIGKGWVTIHAGEFITTPENVGLIGFRMSEVDSG 446

Query:   237 XXXXXXXXXXXIIRPKN 253
                        +IRP N
Sbjct:   447 DNRGGLIVKGVLIRPIN 463

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:505006110 PP2-B15 "phloem protein 2-B15" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
 Identities = 45/144 (31%), Positives = 72/144 (50%)

Query:    53 LPHMY-EAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNSFMLFSRAL 111
             LP  Y   I +  D     SS  +LY  L   + ++   K + +EK SG  S++L SR L
Sbjct:    44 LPTDYCHVISRSTDPHRIFSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDL 103

Query:   112 LITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIML 171
              ITW++   +W W+P  +S     +  +L+   WLEI  ++ T  LSP  +Y    ++ +
Sbjct:   104 SITWSDQRHYWSWSPRSDSR--FSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKV 161

Query:   172 KDPAYGWE-VPVSLRLLLPNGTKQ 194
                AYG + VP    + + NG K+
Sbjct:   162 TSRAYGLDLVPAETSIKVGNGEKK 185

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 65/223 (29%), Positives = 95/223 (42%)

Query:    29 AIAAKPADNTKETKVCEAKEAEVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQ 88
             A  A     T E+ V      +  LP  YE++V  + S +  S  +  +   +  V +  
Sbjct:    81 ACVAASVSKTFESAVSSDCVWDKFLPPEYESLV--SRSRVFASKKELYFALCHNPVLIED 138

Query:    89 KSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEI 148
               K +W+EK SG    ML S+ L ITW     +W W  + ES  +   +AEL+ VCW EI
Sbjct:   139 GKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFN--KIAELLDVCWFEI 196

Query:   149 HARLDTTKLSPGISYEVLFVIMLKD--PAYGWEVPVSLRLLL--------------PNGT 192
               +     LSPG  Y    V   KD  P  G  +PV + L L              P   
Sbjct:   197 RGKTSARVLSPGTRYSAYIVFKTKDRCPGLG-HLPVEVGLGLVGQESSKRFIYFIGPRDR 255

Query:   193 KQEHKENLIVKPRNQ---WIEIPVGEFKSTPENAGEMEISMYE 232
             +   +   + KP  +   W+E  +GEF +  E   E+E S+ E
Sbjct:   256 RGRRETRDVTKPDQREDGWMEAELGEFFNE-ERCDEIEFSVIE 297

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 63/204 (30%), Positives = 94/204 (46%)

Query:    34 PADNTKETKVCEAKEAEVKLPHMYEAIVK-DADSPIDKSSVDKLYDQLYYG-----VFLN 87
             P D      V +  E+ VK   ++E  +  D +S I  S V     +LY+      V  +
Sbjct:    31 PRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSSKKELYFSLCNDPVLFD 90

Query:    88 QKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLE 147
                K  W+EK SG    ML +  L I W ++ ++W W P+ ES  +   VA+L  VCW E
Sbjct:    91 DDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFE--KVAKLRDVCWFE 148

Query:   148 IHARLDTTKLSPGISYEVLFVIMLKDPAYGWE-VPV-----------SLRLLLPNGTKQE 195
             I  R +T  LSP   Y    V    D  YG++ V +           S RL+  +   + 
Sbjct:   149 IRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVVGQEPSRRLICFSEAIRR 208

Query:   196 HKENLIVKPRNQ---WIEIPVGEF 216
              + N +VKP+ +   W+EI +GEF
Sbjct:   209 GRRN-VVKPKQREDGWMEIELGEF 231

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2153217 PP2-A6 "phloem protein 2-A6" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 53/172 (30%), Positives = 87/172 (50%)

Query:    88 QKSKRYWVEKKSGCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDI-VDVAELVQVCWL 146
             +K +R   ++ S     M+ +R L IT +E  + W W+ + E+ +   +++A L +V WL
Sbjct:   221 RKPEREASQEGSSVVPSMVPARDLDITHSEKPQKWTWSTINEAPNSAEIEIATLNKVYWL 280

Query:   147 EIHARLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLP--NGT--KQEHKENLIV 202
             +I   + T  L+PG  YE +FV+ L++ A GWE PV+L+L +   +G   + +  ENL  
Sbjct:   281 KIVGTITTENLTPGAKYEAVFVVKLENNASGWEQPVNLKLKVVQHDGDDDRVDRTENLND 340

Query:   203 KPRNQWIEIPVGEFKSTPENAGEMEI-SMYEYEXXXXXXXXXXXXXIIRPKN 253
                  W++I  G F   P+      I +MY+YE              IRP N
Sbjct:   341 YIGQNWVDILAGVFVVPPKTTPATIIFTMYQYEDKYKKKGLVVKGVAIRPTN 392

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 56/217 (25%), Positives = 96/217 (44%)

Query:    27 NFAIAAKPADNTKETKVCEAKEAEVKLPHMYEAIV-KDADSPIDKSSVDKLYDQLYYG-- 83
             N      P D      V +  E+ V    +++  +  D  S +  S V     +LY+   
Sbjct:    57 NIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSSKKELYFAIC 116

Query:    84 ---VFLNQKSKRYWVEKKSGCNSFMLF-SRALLITWAEDNRFWIWTPVKESSDDIVDVAE 139
                V +    K +W+EK++G   FML   +++ ITW    ++W W  + E+  +  +V E
Sbjct:   117 DNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFE--EVPE 174

Query:   140 LVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKD--PAYGWEVPVSLRLLLPNGTKQEHK 197
             L+ VCW E+   ++T +LSPG  Y    V   K+  P  G +VPV   + L  G +   +
Sbjct:   175 LLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLG-DVPVEATVGLV-GQESSQR 232

Query:   198 ENLIVKPRNQWIEIPVGEF-KSTPENAGEMEISMYEY 233
                 V P +Q  +    +  + T    G ME  + ++
Sbjct:   233 HIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQF 269

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81865	P2A01_ARATH	No assigned EC number	0.4590	0.9182	0.9593	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.200.66.1 SubName- Full=Putative uncharacterized protein; (230 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
pfam14299	154	pfam14299, PP2, Phloem protein 2	2e-62

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  192 bits (491), Expect = 2e-62
 Identities = 70/156 (44%), Positives = 95/156 (60%), Gaps = 5/156 (3%)

Query: 100 GCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSP 159
           G   +ML +RAL ITW +D R+W W P+ ES     +VAEL+ VCWLEI  +++T  LSP
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESR--FSEVAELLDVCWLEIRGKINTRMLSP 58

Query: 160 GISYEVLFVIMLKDPAYGWE-VPVSLRLLLPNGTKQEHKENLIV--KPRNQWIEIPVGEF 216
           G +Y    V  L D AYGW+  PV   + +P+G K   +  + +  K  + W+EI VGEF
Sbjct: 59  GTTYSAYLVFKLADRAYGWDEKPVEFSVSVPDGQKSRQERYVCLPEKRGDGWMEIEVGEF 118

Query: 217 KSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPK 252
            +     GE+E SM E +GG WK GL+V G+ IRPK
Sbjct: 119 FNEGGEDGEVEFSMREVDGGHWKGGLIVDGIEIRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	96.54
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	95.31
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	95.15
PF02018	131	CBM_4_9: Carbohydrate binding domain; InterPro: IP	89.88

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=5.9e-65  Score=428.41  Aligned_cols=151  Identities=50%  Similarity=0.980  Sum_probs=145.2

Q ss_pred             CCeEEEEecccceeeecCCCCceeEeecCCCccccccceEEeeeeEEEEEEEEecCcCCCCceEEEEEEEEEeCCCCCce
Q 025108          100 GCNSFMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARLDTTKLSPGISYEVLFVIMLKDPAYGWE  179 (257)
Q Consensus       100 G~kCymLsAR~L~ItWgdd~rYW~Wi~~~~S~~rF~EVAeL~~VcWLEI~G~i~t~~LSP~t~Y~ay~v~kl~~~~~Gwd  179 (257)
                      |++|||||||+|+|+||||||||+|+++++|  ||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~s--rf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~   78 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDS--RFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWD   78 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcc--cceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCC
Confidence            8999999999999999999999999999988  69999999999999999999999999999999999999999999999


Q ss_pred             e-ceEEEEEecCCee--eeeEEeeecCCCCCeEEEeeeeEEeCCCCCeEEEEEEEEEeCCeeeeeEEEEEEEEEec
Q 025108          180 V-PVSLRLLLPNGTK--QEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYEYEGGKWKKGLVVKGVIIRPK  252 (257)
Q Consensus       180 ~-Pv~~~v~~~~g~~--~~~~~~l~~~~~dgW~EielGeF~~~~~~~~eV~fsl~E~~~~~wK~GLiv~GieIRPk  252 (257)
                      . ||+++|+++++..  +.++++++..+.||||||++|||+++++++++|+|+|+|+++++||+||||+|||||||
T Consensus        79 ~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~GieIRPK  154 (154)
T PF14299_consen   79 SPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIEIRPK  154 (154)
T ss_pred             cCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEEEecC
Confidence            6 9999999998876  56778888889999999999999999889999999999999999999999999999998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=96.54  E-value=0.00091  Score=44.86  Aligned_cols=38  Identities=16%  Similarity=0.135  Sum_probs=31.6

Q ss_pred             CCCCCcchhhhhcccccCcccchhhhhcchhhhhhCcCC
Q 025108           16 PNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAEVKLP   54 (257)
Q Consensus        16 ~~~lp~~~~~~~~~~~~~p~d~cr~a~v~~af~~~~fLP   54 (257)
                      +++||++.+.+|+++ .+|.|.++++.||+.++....-+
T Consensus         1 i~~LP~Eil~~If~~-L~~~dl~~~~~vcr~w~~~~~~~   38 (47)
T PF12937_consen    1 ISSLPDEILLEIFSY-LDPRDLLRLSLVCRRWRRIANDN   38 (47)
T ss_dssp             CCCS-HHHHHHHHTT-S-HHHHHHHTTSSHHHHHHHTCC
T ss_pred             ChHhHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHCCh
Confidence            468999999999999 79999999999999999765444

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=95.31  E-value=0.0057  Score=38.86  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=31.3

Q ss_pred             CCcchhhhhcccccCcccchhhhhcchhhhhhCcCC
Q 025108           19 KPSQNESQNFAIAAKPADNTKETKVCEAKEAEVKLP   54 (257)
Q Consensus        19 lp~~~~~~~~~~~~~p~d~cr~a~v~~af~~~~fLP   54 (257)
                      ||++++.+|+++ -+|.|.++++.||+.|+.....+
T Consensus         1 lP~~ll~~I~~~-l~~~d~~~~~~vc~~~~~~~~~~   35 (41)
T smart00256        1 LPDEILEEILSK-LPPKDLLRLRKVSRRWRSLIDSH   35 (41)
T ss_pred             CCHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCh
Confidence            799999999999 89999999999999999765444

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=95.15  E-value=0.0031  Score=41.97  Aligned_cols=34  Identities=12%  Similarity=0.104  Sum_probs=28.6

Q ss_pred             CCCCCcchhhhhcccccCcccchhhhhcchhhhhh
Q 025108           16 PNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAE   50 (257)
Q Consensus        16 ~~~lp~~~~~~~~~~~~~p~d~cr~a~v~~af~~~   50 (257)
                      +.+||++++.+|+.. .+|.|.++++.||+.++..
T Consensus         3 ~~~LP~~il~~Il~~-l~~~~~~~l~~vsk~~~~~   36 (48)
T PF00646_consen    3 LSDLPDEILQEILSY-LDPKDLLRLSLVSKRWRSL   36 (48)
T ss_dssp             HHHS-HHHHHHHHHT-S-HHHHHHHCTT-HHHHHH
T ss_pred             HHHCCHHHHHHHHHH-CcHHHHHHHHHHhhHHHHH
Confidence            467999999999999 9999999999999999964

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus

Probab=89.88  E-value=3.8  Score=31.59  Aligned_cols=67  Identities=21%  Similarity=0.350  Sum_probs=44.4

Q ss_pred             CCCCceEEEEEEEEEeCCCCCceeceEEEEEecCCe-eeeeEEeeecCCCCCeEEEeeeeEEeCCCCCeEEEEEEE
Q 025108          157 LSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGT-KQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMY  231 (257)
Q Consensus       157 LSP~t~Y~ay~v~kl~~~~~Gwd~Pv~~~v~~~~g~-~~~~~~~l~~~~~dgW~EielGeF~~~~~~~~eV~fsl~  231 (257)
                      |-||.+|.+.|-++....     .++.+.+...++. ...-... .....+.|.+++ ++|... .+...+.|.+.
T Consensus        58 l~~G~~Y~~s~~vk~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~W~~~s-~~ft~~-~~~~~~~l~~~  125 (131)
T PF02018_consen   58 LKPGKTYTVSFWVKADSG-----GTVSVSLRDEDGSPYNWYTGQ-TVTITGEWTKYS-GTFTAP-SDDDTVRLYFE  125 (131)
T ss_dssp             E-TTSEEEEEEEEEESSS-----EEEEEEEEESSTTTEEEEEEE-EEEETSSEEEEE-EEEEEE-SSCEEEEEEEE
T ss_pred             ecCCCEEEEEEEEEeCCC-----CEEEEEEEEcCCCCcEEEEEE-EEECCCCcEEEE-EEEEEC-CCCceEEEEEE
Confidence            569999999999999764     6777777776662 1111110 122458999999 589887 45566666554

These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 25/124 (20%)

Query: 53  LPHMYEAIVKDAD---------SPIDKSSVDKLYDQLYYGVFLNQKSKRYWVEKKSGCNS 103
           L    +A V + D         S + K  +D +         ++   + +W         
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS---KDAVSGTLRLFWTLLSKQEEM 78

Query: 104 FMLFSRALLITWAEDNRFWIWTPVKESSDDIVDVAELVQVCWLEIHARL--DTTKLSPGI 161
              F   +L      N  ++ +P+K           ++   ++E   RL  D    +   
Sbjct: 79  VQKFVEEVL----RINYKFLMSPIKTEQRQ----PSMMTRMYIEQRDRLYNDNQVFAK-- 128

Query: 162 SYEV 165
            Y V
Sbjct: 129 -YNV 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	97.19
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	93.73
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	92.8
1dyo_A	160	Endo-1,4-beta-xylanase Y; carbohydrate-binding mod	91.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	91.66
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	90.43
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	89.58
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	81.21
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	80.8

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=97.19  E-value=0.00011  Score=49.45  Aligned_cols=42  Identities=12%  Similarity=-0.017  Sum_probs=34.2

Q ss_pred             CccCCCCCCcchhhhhcccccCcccchhhhhcchhhhhhCcCC
Q 025108           12 SQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAEVKLP   54 (257)
Q Consensus        12 ~~~~~~~lp~~~~~~~~~~~~~p~d~cr~a~v~~af~~~~fLP   54 (257)
                      ....+.+||++++.+|+++ .+|.|.++++.||+.++....-|
T Consensus         5 ~~~~~~~LP~eil~~I~~~-L~~~dl~~~~~Vck~w~~~~~~~   46 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSC-LCLPELLKVSGVCKRWYRLASDE   46 (53)
T ss_dssp             ----CCSSCHHHHHHHHTT-SCGGGHHHHHTTCHHHHHHHTCG
T ss_pred             CCCCHHHCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCh
Confidence            3567899999999999999 89999999999999999765433

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=93.73  E-value=0.0086  Score=54.92  Aligned_cols=34  Identities=9%  Similarity=-0.012  Sum_probs=32.2

Q ss_pred             CCCCCcchhhhhcccccCcccchhhhhcchhhhhh
Q 025108           16 PNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAE   50 (257)
Q Consensus        16 ~~~lp~~~~~~~~~~~~~p~d~cr~a~v~~af~~~   50 (257)
                      +++||.+++-+|||+ .+|+|+||++.||+..|..
T Consensus         5 l~~LP~ei~l~Ilsf-L~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            5 LTRLPIDVQLYILSF-LSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHSCHHHHHHHHHT-SCHHHHHHHHTTCHHHHHH
T ss_pred             hHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence            678999999999999 9999999999999999984

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=92.80  E-value=0.034  Score=50.59  Aligned_cols=36  Identities=14%  Similarity=-0.047  Sum_probs=33.8

Q ss_pred             cCCCCCCcchhhhhcccccCcccch-hhhhcchhhhhh
Q 025108           14 LQPNEKPSQNESQNFAIAAKPADNT-KETKVCEAKEAE   50 (257)
Q Consensus        14 ~~~~~lp~~~~~~~~~~~~~p~d~c-r~a~v~~af~~~   50 (257)
                      ..++.||++.+..||++ ..|++.+ |++.||+.++..
T Consensus        49 ~~~~~LP~ell~~Il~~-Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAE-LPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHT-SCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHc-CCHHHHHHHHHHHhHHHHHH
Confidence            57889999999999999 8999999 999999999984

>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A

Probab=91.88  E-value=4.2  Score=32.75  Aligned_cols=93  Identities=15%  Similarity=0.244  Sum_probs=57.9

Q ss_pred             cCCCCceEEEEEEEEEeCCCCCceeceEEEEEe--cCCeeeeeEEeeecCCCCCeEEEeeeeEEeCCCCCeEEEEEEEEE
Q 025108          156 KLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLL--PNGTKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYEY  233 (257)
Q Consensus       156 ~LSP~t~Y~ay~v~kl~~~~~Gwd~Pv~~~v~~--~~g~~~~~~~~l~~~~~dgW~EielGeF~~~~~~~~eV~fsl~E~  233 (257)
                      .|.||++|.+..-+++.+..-  ...+.+.+..  .+|..+.....-.....++|.+++-|.|...... ..+.|-+ | 
T Consensus        64 ~l~~g~~Y~~Sa~V~~~~g~~--~~~v~~~l~~~~~~g~~~y~~i~~~~~~~~~W~~L~G~~ft~~~~~-~~~~lyv-e-  138 (160)
T 1dyo_A           64 TFVPGNTYCFSVVASFIEGAS--STTFCMKLQYVDGSGTQRYDTIDMKTVGPNQWVHLYNPQYRIPSDA-TDMYVYV-E-  138 (160)
T ss_dssp             TSCTTCEEEEEEEEECCSSSS--CEEEEEEEEEECTTSCEEEEEEEEEEECSSCCEEEEEEEEECCTTC-EEEEEEE-E-
T ss_pred             hccCCCEEEEEEEEEECCCCC--ceeEEEEEEEEcCCCCEEEEEEeeEEEcCCccEEEECcEEEeCCCC-CEEEEEE-E-
Confidence            588999999999999876431  1234444443  3454332222111235789999998899986542 3343322 3 


Q ss_pred             eCCeeeeeEEEEEEEEEecCC
Q 025108          234 EGGKWKKGLVVKGVIIRPKNQ  254 (257)
Q Consensus       234 ~~~~wK~GLiv~GieIRPk~~  254 (257)
                       +..-..=+.|+.|.|.|...
T Consensus       139 -~~~~~~d~yiDdv~i~~~g~  158 (160)
T 1dyo_A          139 -TADDTINFYIDEAIGAVAGT  158 (160)
T ss_dssp             -ESSCCCCEEEEEEEEEETTC
T ss_pred             -CCCCCccEEEEEEEEEeCcc
Confidence             23345668999999999754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=91.66  E-value=0.047  Score=47.69  Aligned_cols=47  Identities=11%  Similarity=0.049  Sum_probs=39.0

Q ss_pred             CccCCCCCCcchhhhhcccccCcccchhhhhcchhhhhhCcCCCCchh
Q 025108           12 SQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAEVKLPHMYEA   59 (257)
Q Consensus        12 ~~~~~~~lp~~~~~~~~~~~~~p~d~cr~a~v~~af~~~~fLP~dy~~   59 (257)
                      .+..+++||++++.+|+++ -+++|.++++.||+.++...+-|.-+..
T Consensus         5 ~~~~~~~LP~eil~~If~~-L~~~d~~~~~~vc~~W~~~~~~~~~~~~   51 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSC-LCLPELLKVSGVCKRWYRLASDESLWQT   51 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTT-SCHHHHHHTTSSCHHHHHHHTCSTTSSE
T ss_pred             ccCChhhCCHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhcCchhhee
Confidence            4567899999999999999 8999999999999999987665654443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=90.43  E-value=0.076  Score=47.85  Aligned_cols=36  Identities=11%  Similarity=0.053  Sum_probs=32.9

Q ss_pred             cCCCCCCcchhhhhcccccCcccchhhhhcchhhhhh
Q 025108           14 LQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAE   50 (257)
Q Consensus        14 ~~~~~lp~~~~~~~~~~~~~p~d~cr~a~v~~af~~~   50 (257)
                      --++.||++++.+||++ ..|.|.|+++.||+.++..
T Consensus        17 d~~~~lp~e~~~~i~~~-l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           17 DFISLLPKELALYVLSF-LEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             STTTSSCHHHHHHHHTT-SCHHHHHHHTTSCHHHHHH
T ss_pred             ChhHHCCHHHHHHHHHh-CCHHHHHHHHHHhHHHHhh
Confidence            35789999999999999 8999999999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=89.58  E-value=0.054  Score=48.78  Aligned_cols=48  Identities=15%  Similarity=0.071  Sum_probs=34.5

Q ss_pred             CCCCCCCCCCCccCCCCCCcchhhhhcccccCcccchhhhhcchhhhhh
Q 025108            2 GTGSSKEDSSSQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAE   50 (257)
Q Consensus         2 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~p~d~cr~a~v~~af~~~   50 (257)
                      |+|+.-++.-..--+..||++++.+||++ ..|.|.||++.||+.++..
T Consensus         1 ~~~~~~~~~~~~d~~~~lp~~~~~~i~~~-l~~~~l~~~~~v~~~w~~~   48 (464)
T 3v7d_B            1 GAGTLIKDNLKRDLITSLPFEISLKIFNY-LQFEDIINSLGVSQNWNKI   48 (464)
T ss_dssp             --------CCCCCHHHHSCHHHHHHHHTT-SCHHHHHHHHTTCHHHHHH
T ss_pred             CCCcccCcccccCChHHCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence            34444444444445678999999999999 8999999999999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=81.21  E-value=0.27  Score=44.27  Aligned_cols=34  Identities=9%  Similarity=0.049  Sum_probs=30.9

Q ss_pred             CCCCCcc----hhhhhcccccCcccchhhhhcchhhhhh
Q 025108           16 PNEKPSQ----NESQNFAIAAKPADNTKETKVCEAKEAE   50 (257)
Q Consensus        16 ~~~lp~~----~~~~~~~~~~~p~d~cr~a~v~~af~~~   50 (257)
                      +..||++    .+.+||++ ..|.|.||++.||+.++..
T Consensus        11 ~~~lp~e~~~~~~~~i~~~-l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A           11 ITALPARGLDHIAENILSY-LDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTT-CCHHHHHHHHHHCHHHHHH
T ss_pred             HHHCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence            4679999    99999999 8999999999999999863

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=80.80  E-value=0.39  Score=45.05  Aligned_cols=37  Identities=14%  Similarity=0.093  Sum_probs=27.9

Q ss_pred             cCCCCCCcchhhhhcccccCcccchhhhhcchhhhhh
Q 025108           14 LQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAE   50 (257)
Q Consensus        14 ~~~~~lp~~~~~~~~~~~~~p~d~cr~a~v~~af~~~   50 (257)
                      -.+++||++++.+|+++..+++|+++++.||+.++..
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            3578999999999999845599999999999988864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	97.34
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.87
d1h6ya_	157	Xylan-binding domain {Clostridium thermocellum [Ta	95.84
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	94.07
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	85.64
d1guia_	155	Carbohydrate binding module from laminarinase 16A	82.73

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=3.4e-05  Score=48.51  Aligned_cols=35  Identities=14%  Similarity=0.007  Sum_probs=32.1

Q ss_pred             CCCCCcchhhhhcccccCcccchhhhhcchhhhhhC
Q 025108           16 PNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAEV   51 (257)
Q Consensus        16 ~~~lp~~~~~~~~~~~~~p~d~cr~a~v~~af~~~~   51 (257)
                      ++.||++++.+|+++ .+|+|.||++.||+.++...
T Consensus         1 f~~LP~eil~~If~~-L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSC-LCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTT-SCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHh
Confidence            478999999999999 89999999999999999643

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00034  Score=50.94  Aligned_cols=36  Identities=11%  Similarity=0.091  Sum_probs=33.2

Q ss_pred             CCCCCCcchhhhhcccccCcccchhhhhcchhhhhhC
Q 025108           15 QPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAEV   51 (257)
Q Consensus        15 ~~~~lp~~~~~~~~~~~~~p~d~cr~a~v~~af~~~~   51 (257)
                      -+..||.+++.+|+++ .+|.|+|+++.||+.++...
T Consensus        18 ~i~~LP~Eil~~Ils~-Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          18 FISLLPKELALYVLSF-LEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             TTTSSCHHHHHHHHTT-SCHHHHHHHTTSCHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999 89999999999999999863

>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM22
domain: Xylan-binding domain
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.84  E-value=0.18  Score=37.30  Aligned_cols=101  Identities=15%  Similarity=0.208  Sum_probs=58.7

Q ss_pred             EEecCcCCCCceEEEEEEEEEeCCCCCceeceEEEEEecCCeeeeeEEeeecCCCCCeEEEeeeeEEeCCCCCeEEEEEE
Q 025108          151 RLDTTKLSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNGTKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISM  230 (257)
Q Consensus       151 ~i~t~~LSP~t~Y~ay~v~kl~~~~~Gwd~Pv~~~v~~~~g~~~~~~~~l~~~~~dgW~EielGeF~~~~~~~~eV~fsl  230 (257)
                      .+....|.||++|.+.+-+|+.+...+-..-+.+...-.++..............++|.++..+.|....+ ...+.|-+
T Consensus        56 ~~~~~~l~~g~tY~~s~~vk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~l~~  134 (157)
T d1h6ya_          56 ALNPRTFVPGNTYCFSVVASFIEGASSTTFCMKLQYVDGSGTQRYDTIDMKTVGPNQWVHLYNPQYRIPSD-ATDMYVYV  134 (157)
T ss_dssp             ECCTTTSCTTCEEEEEEEEECCSSSSCEEEEEEEEEECTTSCEEEEEEEEEEECTTCCEEEEEEEEECCTT-CEEEEEEE
T ss_pred             EecceeccCCCEEEEEEEEEeCCCCcceeEEEEEEEecCCCceeEEEeeEEEeccCccEEEEEEEEECCCC-CcEEEEEE
Confidence            33444588999999999999876544433322222222233222111111223467899998888877653 33455432


Q ss_pred             EEEeCCeeeeeEEEEEEEEEecCCC
Q 025108          231 YEYEGGKWKKGLVVKGVIIRPKNQA  255 (257)
Q Consensus       231 ~E~~~~~wK~GLiv~GieIRPk~~~  255 (257)
                       +  +..-..-+.|+-+.+.|+...
T Consensus       135 -~--~~~~~~~~yiDDv~~~~~~~~  156 (157)
T d1h6ya_         135 -A--TADDTINFYIDEAIGAVAGTV  156 (157)
T ss_dssp             -E--ESSCCCCEEEEEEEEEETTCC
T ss_pred             -E--CCCCCceEEEeeEEEeccccc
Confidence             2  222223389999999998754

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.07  E-value=0.0033  Score=45.61  Aligned_cols=34  Identities=12%  Similarity=-0.016  Sum_probs=31.3

Q ss_pred             CCCCCcchhhhhcccccCcccchhhhhcchhhhhh
Q 025108           16 PNEKPSQNESQNFAIAAKPADNTKETKVCEAKEAE   50 (257)
Q Consensus        16 ~~~lp~~~~~~~~~~~~~p~d~cr~a~v~~af~~~   50 (257)
                      +..||.+.+.+|+++ -+|.|.|+++.||+.++..
T Consensus         6 ~~~LP~Ell~~I~s~-Ld~~dL~~~s~Vcr~W~~~   39 (100)
T d1nexb1           6 ITSLPFEISLKIFNY-LQFEDIINSLGVSQNWNKI   39 (100)
T ss_dssp             HHHSCHHHHHHHHTT-SCHHHHHHHTTTCHHHHHH
T ss_pred             hhhCCHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence            467999999999999 8999999999999999864

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.64  E-value=0.11  Score=38.16  Aligned_cols=33  Identities=9%  Similarity=0.073  Sum_probs=29.0

Q ss_pred             CCCCc----chhhhhcccccCcccchhhhhcchhhhhh
Q 025108           17 NEKPS----QNESQNFAIAAKPADNTKETKVCEAKEAE   50 (257)
Q Consensus        17 ~~lp~----~~~~~~~~~~~~p~d~cr~a~v~~af~~~   50 (257)
                      ..||.    +...+||++ -.|+|.|+++.||+.++..
T Consensus        12 ~~LP~~l~~EI~~~Ils~-Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1          12 TALPARGLDHIAENILSY-LDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             HHTGGGTCHHHHHHHHTT-CCHHHHHHHHHHCHHHHHH
T ss_pred             HHCCCCChHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence            34665    899999999 8999999999999999864

>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Carbohydrate binding module from laminarinase 16A
species: Thermotoga maritima [TaxId: 2336]

Probab=82.73  E-value=6.8  Score=28.32  Aligned_cols=86  Identities=15%  Similarity=0.300  Sum_probs=51.2

Q ss_pred             CCCCceEEEEEEEEEeCCCCCceeceEEEEEecCC-eeeeeEEeeecCCCCCeEEEeeeeEEeCCCCCeEEEEEEEEEeC
Q 025108          157 LSPGISYEVLFVIMLKDPAYGWEVPVSLRLLLPNG-TKQEHKENLIVKPRNQWIEIPVGEFKSTPENAGEMEISMYEYEG  235 (257)
Q Consensus       157 LSP~t~Y~ay~v~kl~~~~~Gwd~Pv~~~v~~~~g-~~~~~~~~l~~~~~dgW~EielGeF~~~~~~~~eV~fsl~E~~~  235 (257)
                      |.||.+|.+.|.+|-...     .++.+.+...++ ........+  .....|.+++ .+|......+..+.|.+.-  +
T Consensus        69 l~~g~~Y~lSf~~k~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~t~~W~~~s-~~f~~~~~~~~~~~l~~~~--~  138 (155)
T d1guia_          69 LYRGKTYTISFKAKADTP-----RPINVKILQNHDPWTNYFAQTV--NLTADWQTFT-FTYTHPDDADEVVQISFEL--G  138 (155)
T ss_dssp             CCTTCEEEEEEEEEESSC-----EEEEEEEECSSTTCCEEEEEEE--EECSSCEEEE-EEEECCTTSCSEEEEEEEC--C
T ss_pred             ecCCCEEEEEEEEEeCCC-----CcEEEEEEEcCCCCeEEeeeEE--eeccccEEEE-EEEEecCCCCccEEEEEEE--C
Confidence            779999999999886432     234444443222 111111111  1245899988 4787766544555554442  2


Q ss_pred             CeeeeeEEEEEEEEEec
Q 025108          236 GKWKKGLVVKGVIIRPK  252 (257)
Q Consensus       236 ~~wK~GLiv~GieIRPk  252 (257)
                      +.-.+.+.|+-|.|-||
T Consensus       139 ~~~~~~~~iDnV~l~~~  155 (155)
T d1guia_         139 EGTATTIYFDDVTVSPQ  155 (155)
T ss_dssp             SSCCCEEEEEEEEEEEC
T ss_pred             CCCCcEEEEEEEEEEEC
Confidence            33346799999999997