Citrus Sinensis ID: 025111

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE
cccEEEEEcccccccccccHHHHcccccHHHHHHHHHHccccccccccEEEEEEEEcccEEEEEEEEEEcccEEEEEEEcccccccEEEEcccccHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccc
cccEEEEEccHHHHHEEEEEEEccccccHHHHHHHHHHHHHccccccccEEEEEEccccEEEEEEEccccccEEEEEEEcHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHcccccHHccHHHHHHHHHHHHHHHHHHHHHccc
MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINqdknkyntpkyRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAhelpryglevgltNYAAAYCTGLLLARRVLKMLEMddeyegnvegaldggldiphsdkrfagfskdgkqLDAEVHRKYIYGGHVAAYMSTlmedepekyQSHFTEYIKKGIDADGLEALYKKVHAAIradptmkksekpapkehkrynlkkLTYEERKAKLVERLNALnsavdeede
mafvkaqkskayfkrfqvkykrrregktdyrarirlinqdknkyntpkYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHaairadptmkksekpapkehkrynlkkltyeeRKAKLVERLnalnsavdeede
MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE
**********AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEGALDGGLDIPH***RFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI**************************************************
*AFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEGALDGGLDIPHSDKRFAGFSKD***LDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAA**************************TYEERKAKLVERLNAL**A******
********SKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADP***********EHKRYNLKKLTYEERKAKLVERLNALN********
*AFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTM*****PA*K**KRYNLKKLTYEERKAKLVERLNALNSAVD****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKxxxxxxxxxxxxxxxxxxxxxVDEEDE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query257 2.2.26 [Sep-21-2011]
Q6UNT2302 60S ribosomal protein L5 N/A no 0.976 0.831 0.748 1e-122
A2WXX3304 60S ribosomal protein L5- N/A no 0.972 0.822 0.705 1e-115
Q8LBI1301 60S ribosomal protein L5- yes no 0.976 0.833 0.706 1e-114
Q0JGY1304 60S ribosomal protein L5- yes no 0.972 0.822 0.705 1e-114
P49227301 60S ribosomal protein L5- yes no 0.976 0.833 0.703 1e-114
Q8L4L4304 60S ribosomal protein L5- yes no 0.964 0.815 0.693 1e-111
Q56FG6297 60S ribosomal protein L5 N/A no 0.937 0.811 0.523 6e-78
Q26481295 60S ribosomal protein L5 N/A no 0.988 0.861 0.511 5e-76
Q4KTI3293 60S ribosomal protein L5 N/A no 0.949 0.832 0.507 6e-76
Q9W5R8299 60S ribosomal protein L5 yes no 1.0 0.859 0.513 8e-76
>sp|Q6UNT2|RL5_CUCSA 60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1 Back     alignment and function desciption
 Score =  436 bits (1121), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/290 (74%), Positives = 237/290 (81%), Gaps = 39/290 (13%)

Query: 1   MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           MAF KAQK+KAYFKR+QVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR +NKDI
Sbjct: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDI 60

Query: 61  IAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
            AQI+SA+I GD VLA+AY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMD EYE
Sbjct: 61  TAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120

Query: 121 GNVE---------------------------------------GALDGGLDIPHSDKRFA 141
           GNVE                                       GALDGGLDIPHSDKRFA
Sbjct: 121 GNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 142 GFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYK 201
           G++K+G+QLD EVHRKYI+GGHVAAYM TLMEDEPEKYQSHF+EYIKKGI+AD LE LYK
Sbjct: 181 GYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYK 240

Query: 202 KVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSA 251
           KVHAAIRA+P  KKS+KP PK HKRYNLKKLTY+ERKA+LVERLNALNSA
Sbjct: 241 KVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSA 290
This protein binds 5S RNA.
Cucumis sativus (taxid: 3659)
>sp|A2WXX3|RL51_ORYSI 60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2 Back     alignment and function description
>sp|Q8LBI1|RL51_ARATH 60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2 Back     alignment and function description
>sp|Q0JGY1|RL51_ORYSJ 60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1 Back     alignment and function description
>sp|P49227|RL52_ARATH 60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3 Back     alignment and function description
>sp|Q8L4L4|RL52_ORYSJ 60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1 Back     alignment and function description
>sp|Q56FG6|RL5_LYSTE 60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1 Back     alignment and function description
>sp|Q26481|RL5_STYCL 60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3 Back     alignment and function description
>sp|Q4KTI3|RL5_SUBDO 60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9W5R8|RL5_DROME 60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
224127226297 predicted protein [Populus trichocarpa] 1.0 0.865 0.787 1e-128
359495418262 PREDICTED: 60S ribosomal protein L5-like 0.976 0.958 0.860 1e-125
224121940297 predicted protein [Populus trichocarpa] 1.0 0.865 0.756 1e-123
118484032297 unknown [Populus trichocarpa] 1.0 0.865 0.753 1e-123
255567762299 ribosomal protein L5, putative [Ricinus 0.972 0.836 0.764 1e-122
356520322298 PREDICTED: 60S ribosomal protein L5-like 1.0 0.862 0.741 1e-121
296084316333 unnamed protein product [Vitis vinifera] 0.972 0.750 0.761 1e-121
356560595298 PREDICTED: 60S ribosomal protein L5-like 1.0 0.862 0.738 1e-121
225434146301 PREDICTED: 60S ribosomal protein L5-like 0.972 0.830 0.761 1e-121
255567154298 ribosomal protein L5, putative [Ricinus 1.0 0.862 0.729 1e-121
>gi|224127226|ref|XP_002329431.1| predicted protein [Populus trichocarpa] gi|118486443|gb|ABK95061.1| unknown [Populus trichocarpa] gi|222870481|gb|EEF07612.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/296 (78%), Positives = 245/296 (82%), Gaps = 39/296 (13%)

Query: 1   MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           MAF KAQKS+AYFKR+QVK+KRRR GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI
Sbjct: 1   MAFAKAQKSRAYFKRYQVKFKRRRAGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 61  IAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
           IAQI SA+I GD VLA+AYAHELPRYGLE GLTNYAAAYCTGLLLARRVLKMLEMDDEYE
Sbjct: 61  IAQIASASIAGDIVLASAYAHELPRYGLEAGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 121 GNVE---------------------------------------GALDGGLDIPHSDKRFA 141
           GNVE                                       GALDGGLDIPHSDKRFA
Sbjct: 121 GNVEATGEDFSVEPADSRRPFRALLDVGLLRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 142 GFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYK 201
           GF+KD KQLDAEVHRKYIYGGHVAAYM TLMEDEPEKYQSHF+EY+K+GIDADG+EALYK
Sbjct: 181 GFAKDNKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFSEYLKRGIDADGMEALYK 240

Query: 202 KVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE 257
           KVHAAIRADPT KKSEK  PKEHKRYNLKKLTYEERKAKLVERLNALNSA D+ED+
Sbjct: 241 KVHAAIRADPTAKKSEKQPPKEHKRYNLKKLTYEERKAKLVERLNALNSAADDEDD 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359495418|ref|XP_002265940.2| PREDICTED: 60S ribosomal protein L5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121940|ref|XP_002330691.1| predicted protein [Populus trichocarpa] gi|118487797|gb|ABK95722.1| unknown [Populus trichocarpa] gi|222872295|gb|EEF09426.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118484032|gb|ABK93902.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255567762|ref|XP_002524859.1| ribosomal protein L5, putative [Ricinus communis] gi|223535822|gb|EEF37483.1| ribosomal protein L5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356520322|ref|XP_003528812.1| PREDICTED: 60S ribosomal protein L5-like [Glycine max] Back     alignment and taxonomy information
>gi|296084316|emb|CBI24704.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356560595|ref|XP_003548576.1| PREDICTED: 60S ribosomal protein L5-like [Glycine max] Back     alignment and taxonomy information
>gi|225434146|ref|XP_002277846.1| PREDICTED: 60S ribosomal protein L5-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255567154|ref|XP_002524558.1| ribosomal protein L5, putative [Ricinus communis] gi|223536111|gb|EEF37766.1| ribosomal protein L5, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
TAIR|locus:2094508301 ATL5 "ribosomal protein L5" [A 0.536 0.458 0.798 2.4e-110
TAIR|locus:2167042301 RPL5B "ribosomal protein L5 B" 0.536 0.458 0.798 4.9e-110
ZFIN|ZDB-GENE-040625-93328 rpl5b "ribosomal protein L5b" 0.482 0.378 0.677 2.5e-75
FB|FBgn0064225299 RpL5 "Ribosomal protein L5" [D 0.482 0.414 0.685 8.5e-75
UNIPROTKB|P22451297 RPL5 "60S ribosomal protein L5 0.482 0.417 0.709 2.3e-74
UNIPROTKB|P46777297 RPL5 "60S ribosomal protein L5 0.482 0.417 0.717 2.9e-74
MGI|MGI:102854297 Rpl5 "ribosomal protein L5" [M 0.498 0.430 0.692 3.7e-74
UNIPROTKB|F1S530297 RPL5 "60S ribosomal protein L5 0.482 0.417 0.717 7.6e-74
RGD|619825297 Rpl5 "ribosomal protein L5" [R 0.482 0.417 0.709 7.6e-74
UNIPROTKB|F2Z4K4296 RPL5 "60S ribosomal protein L5 0.474 0.412 0.713 7.6e-74
TAIR|locus:2094508 ATL5 "ribosomal protein L5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 568 (205.0 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
 Identities = 111/139 (79%), Positives = 122/139 (87%)

Query:     1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
             M FVK+ KS AYFKR+QVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI
Sbjct:     1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query:    61 IAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
             +AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYE
Sbjct:    61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query:   121 GNVEGALDGGLDIPHSDKR 139
             GNVE A      +  +D R
Sbjct:   121 GNVE-ATGEDFSVEPTDSR 138
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0008097 "5S rRNA binding" evidence=IEA;IDA
GO:0042254 "ribosome biogenesis" evidence=ISS
GO:0005634 "nucleus" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0006913 "nucleocytoplasmic transport" evidence=TAS
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0009955 "adaxial/abaxial pattern specification" evidence=IGI
GO:0008283 "cell proliferation" evidence=IMP
GO:0009965 "leaf morphogenesis" evidence=IMP
GO:0010015 "root morphogenesis" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
TAIR|locus:2167042 RPL5B "ribosomal protein L5 B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040625-93 rpl5b "ribosomal protein L5b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0064225 RpL5 "Ribosomal protein L5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P22451 RPL5 "60S ribosomal protein L5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P46777 RPL5 "60S ribosomal protein L5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:102854 Rpl5 "ribosomal protein L5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S530 RPL5 "60S ribosomal protein L5" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|619825 Rpl5 "ribosomal protein L5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4K4 RPL5 "60S ribosomal protein L5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L4L4RL52_ORYSJNo assigned EC number0.69310.96490.8157yesno
O59953RL5_NEUCRNo assigned EC number0.50830.96880.8272N/Ano
P49227RL52_ARATHNo assigned EC number0.70340.97660.8338yesno
Q58DW5RL5_BOVINNo assigned EC number0.49640.94550.8181yesno
Q26481RL5_STYCLNo assigned EC number0.51180.98830.8610N/Ano
O74306RL5B_SCHPONo assigned EC number0.48270.94550.8265yesno
P49405RL5_CAEELNo assigned EC number0.47970.98830.8668yesno
Q8LBI1RL51_ARATHNo assigned EC number0.70680.97660.8338yesno
P52822RL5A_SCHPONo assigned EC number0.47930.94550.8265yesno
Q54XX3RL5_DICDINo assigned EC number0.44830.93770.8253yesno
Q0JGY1RL51_ORYSJNo assigned EC number0.70580.97270.8223yesno
O44248RL5_ANOGANo assigned EC number0.50600.80540.6369yesno
Q9W5R8RL5_DROMENo assigned EC number0.51341.00.8595yesno
P46777RL5_HUMANNo assigned EC number0.50.94550.8181yesno
Q627R7RL5_CAEBRNo assigned EC number0.50880.94160.8231N/Ano
Q6UNT2RL5_CUCSANo assigned EC number0.74820.97660.8311N/Ano
O65353RL5_HELANNo assigned EC number0.52480.92990.8047N/Ano
P22451RL5_CHICKNo assigned EC number0.53960.82490.7138yesno
Q5XUC7RL5_TOXCINo assigned EC number0.51050.94550.81N/Ano
Q1HQU2RL5_AEDAENo assigned EC number0.50880.93380.8080N/Ano
A2WXX3RL51_ORYSINo assigned EC number0.70580.97270.8223N/Ano
Q56FG6RL5_LYSTENo assigned EC number0.52310.93770.8114N/Ano
Q4KTI3RL5_SUBDONo assigned EC number0.50700.94940.8327N/Ano
O76190RL5_BOMMONo assigned EC number0.50160.96100.8260N/Ano
P09895RL5_RATNo assigned EC number0.53170.82490.7138yesno
O22608RL5_DUNSANo assigned EC number0.52230.87930.8339N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_1200093
SubName- Full=Putative uncharacterized protein; (297 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.1845.1.1
60S ribosomal protein L4/L1 (RPL4D) (408 aa)
• ••••• 0.713
estExt_Genewise1_v1.C_280409
SubName- Full=Putative uncharacterized protein; (408 aa)
• ••••• 0.712
estExt_Genewise1_v1.C_LG_XVI2622
60S ribosomal protein L4/L1 (RPL4D) (407 aa)
• ••••• 0.679
estExt_fgenesh4_pm.C_LG_III0216
SubName- Full=Putative uncharacterized protein; (146 aa)
•  •••  0.661
estExt_fgenesh4_pg.C_LG_VII0552
SubName- Full=Putative uncharacterized protein; (146 aa)
•  •••  0.660
estExt_fgenesh4_pm.C_LG_V0429
SubName- Full=Putative uncharacterized protein; (389 aa)
• ••••• 0.657
estExt_fgenesh4_pg.C_LG_V0222
SubName- Full=Putative uncharacterized protein; (147 aa)
•  •••  0.650
fgenesh4_pg.C_LG_VI001257
SubName- Full=Putative uncharacterized protein; (180 aa)
•  •• • 0.649
estExt_fgenesh4_pm.C_LG_II0304
SubName- Full=Putative uncharacterized protein; (389 aa)
• ••••  0.649
eugene3.01500073
SubName- Full=Putative uncharacterized protein; (389 aa)
• ••••  0.648

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
PTZ00069300 PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov 1e-121
pfam1420493 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-termin 2e-43
PRK08569193 PRK08569, rpl18p, 50S ribosomal protein L18P; Revi 4e-35
pfam00861119 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e fami 9e-32
COG0256125 COG0256, RplR, Ribosomal protein L18 [Translation, 2e-22
cd00432103 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 1e-20
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional Back     alignment and domain information 
 Score =  348 bits (895), Expect = e-121
 Identities = 163/297 (54%), Positives = 192/297 (64%), Gaps = 50/297 (16%)

Query: 1   MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           MAFVK  K+KAYFKRFQVKY+RRREGKTDY AR RLI QDKNKYN+PKYR VVR TNKDI
Sbjct: 1   MAFVKVVKNKAYFKRFQVKYRRRREGKTDYYARRRLILQDKNKYNSPKYRLVVRITNKDI 60

Query: 61  IAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
           I QIV A IVGD VLAAAY+HELPR+G+ VGLTNYAAAY TGLLLARR+LK L +D ++E
Sbjct: 61  ICQIVYATIVGDKVLAAAYSHELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFE 120

Query: 121 GNVE-----------------------------------------GALDGGLDIPHSDKR 139
           G  E                                         GA+DGGL IPHS  R
Sbjct: 121 GVKEADGEYYHVDEEDDEERRPFKAILDVGLARTTTGNRVFGALKGAVDGGLHIPHSPNR 180

Query: 140 FAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEAL 199
           F G+SK+    DAEVHR  I+G HVA YM  L E++P+KY+  F++YIK G+  D LE +
Sbjct: 181 FPGYSKEKDSYDAEVHRDRIFGKHVAEYMKQLKEEDPDKYKKQFSKYIKAGVGPDSLEDM 240

Query: 200 YKKVHAAIRADPTMKKSEKPAPK--EHKRYNLKKLTYEERK-------AKLVERLNA 247
           YKK HAAIRA+P+  K +K   K   HK+Y  KKLT ++RK       A+  ERL  
Sbjct: 241 YKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQK 297

Length = 300
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region Back     alignment and domain information
>gnl|CDD|236294 PRK08569, rpl18p, 50S ribosomal protein L18P; Reviewed Back     alignment and domain information
>gnl|CDD|216159 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family Back     alignment and domain information
>gnl|CDD|223334 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238246 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 257
PTZ00069300 60S ribosomal protein L5; Provisional 100.0
KOG0875264 consensus 60S ribosomal protein L5 [Translation, r 100.0
PRK08569193 rpl18p 50S ribosomal protein L18P; Reviewed 100.0
PF1420494 Ribosomal_L18_c: Ribosomal L18 C-terminal region; 100.0
COG0256125 RplR Ribosomal protein L18 [Translation, ribosomal 100.0
PF00861119 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr 99.95
PRK05593117 rplR 50S ribosomal protein L18; Reviewed 99.93
CHL00139109 rpl18 ribosomal protein L18; Validated 99.93
TIGR00060114 L18_bact ribosomal protein L18, bacterial type. Th 99.92
cd00432103 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is 99.88
PTZ00032211 60S ribosomal protein L18; Provisional 99.85
KOG3333188 consensus Mitochondrial/chloroplast ribosomal prot 96.66
PTZ00090233 40S ribosomal protein S11; Provisional 96.02
PRK05309128 30S ribosomal protein S11; Validated 94.45
TIGR03632108 bact_S11 30S ribosomal protein S11. This model des 94.4
PF00411110 Ribosomal_S11: Ribosomal protein S11; InterPro: IP 94.24
CHL00041116 rps11 ribosomal protein S11 93.97
PRK09607132 rps11p 30S ribosomal protein S11P; Reviewed 93.32
PTZ00129149 40S ribosomal protein S14; Provisional 92.35
TIGR03628114 arch_S11P archaeal ribosomal protein S11P. This mo 86.47
COG0100129 RpsK Ribosomal protein S11 [Translation, ribosomal 81.61
>PTZ00069 60S ribosomal protein L5; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.4e-104  Score=725.59  Aligned_cols=255  Identities=62%  Similarity=0.983  Sum_probs=244.8

Q ss_pred             CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 025111            1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYA   80 (257)
Q Consensus         1 m~fvk~~kn~ay~~ryqvk~rRRregkTdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS   80 (257)
                      |+||||+||+|||+||||||||||||||||++|++||.||+||||||+||||||+||++||||||.+.++||+|||||+|
T Consensus         1 M~fvKv~KnkaY~~ryqvkfRRRREGKTdY~~R~rLi~q~knKynspK~RlVVR~TN~~ii~Qiv~~~~~GD~vl~sA~S   80 (300)
T PTZ00069          1 MAFVKVVKNKAYFKRFQVKYRRRREGKTDYYARRRLILQDKNKYNSPKYRLVVRITNKDIICQIVYATIVGDKVLAAAYS   80 (300)
T ss_pred             CCceeeeecccccccccchhhhhhcccccHHHHHHHHHccccccCCCCceEEEEEECCcEEEEEEEeecCCCEEEEEeeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCccHHHHHHHHHHHHHHHHHhcCCCccccccc-------------------------------------
Q 025111           81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNV-------------------------------------  123 (257)
Q Consensus        81 ~el~k~g~k~~~~N~~AAy~tG~LlA~ral~k~Gl~~~YhG~v-------------------------------------  123 (257)
                      +||++|||++|++|++||||||+|+|+|+|+++||++.|.|..                                     
T Consensus        81 ~eL~kyG~k~gl~N~~AAY~TGlL~arR~L~kl~ld~~y~G~~e~~g~~y~v~e~~~~~~rpf~a~LDiGL~rtt~G~RV  160 (300)
T PTZ00069         81 HELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFEGVKEADGEYYHVDEEDDEERRPFKAILDVGLARTTTGNRV  160 (300)
T ss_pred             hhHhhcCcCCCCccHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccccccCCCCceEEEeeccccCCCCcee
Confidence            9999999999999999999999999999999999999999872                                     


Q ss_pred             ----cccccccccccCCCCccCCcCCCCCCCCHHhhhcccccccHHHHHHhhcccChHHHHhhHHHHHHcCCCcchHHHH
Q 025111          124 ----EGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEAL  199 (257)
Q Consensus       124 ----kGArD~GL~IPhs~~~fp~~~~~~k~~~ae~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik~gi~p~~~e~~  199 (257)
                          +||+||||+||||+++|||||.++++||||+|++||+|+|||+||+.|+|||||+|++|||+||++||+||+||+|
T Consensus       161 FaalKGa~DgGl~IPhs~~rfpg~d~e~~~~dAe~hR~rI~G~HVa~Ym~~Lkeedee~yk~qFS~yik~gl~~d~le~~  240 (300)
T PTZ00069        161 FGALKGAVDGGLHIPHSPNRFPGYSKEKDSYDAEVHRDRIFGKHVAEYMKQLKEEDPDKYKKQFSKYIKAGVGPDSLEDM  240 (300)
T ss_pred             eeehhcccccCcccCCCCCcCCCCCccccccChHHHHhhhcchhHHHHHHHhhhhChHHHHHHHHHHHHcCCChhHHHHH
Confidence                1999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCc--ccccccCCCCCCHHHHHHHHHHHHHHHhhhhccc
Q 025111          200 YKKVHAAIRADPTMKKSEKPAP--KEHKRYNLKKLTYEERKAKLVERLNALNSAVDEE  255 (257)
Q Consensus       200 y~~~~~~I~~~P~~~k~~k~~~--~~~k~~~~~Klt~~qrk~rv~~K~~~~~~~~~~~  255 (257)
                      |++||++|++||++++++++.+  ..+|+|+.+|||++||++||++|++++++.++++
T Consensus       241 y~~ah~~Ir~~P~~~~~~kk~~~~~~~Kr~~~~Klt~~qrk~rv~~k~a~~~~~~q~~  298 (300)
T PTZ00069        241 YKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKK  298 (300)
T ss_pred             HHHHHHHHHhCcCccCccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999998876665542  4678999999999999999999999999877654

>KOG0875 consensus 60S ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed Back     alignment and domain information
>PF14204 Ribosomal_L18_c: Ribosomal L18 C-terminal region; PDB: 2ZKR_n 4A1E_M 4A1C_M 4A1A_M 4A17_M 3O58_E 1S1I_E 3IZS_Q 3O5H_E 3IZR_Q Back     alignment and domain information
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK05593 rplR 50S ribosomal protein L18; Reviewed Back     alignment and domain information
>CHL00139 rpl18 ribosomal protein L18; Validated Back     alignment and domain information
>TIGR00060 L18_bact ribosomal protein L18, bacterial type Back     alignment and domain information
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information
>PTZ00032 60S ribosomal protein L18; Provisional Back     alignment and domain information
>KOG3333 consensus Mitochondrial/chloroplast ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00090 40S ribosomal protein S11; Provisional Back     alignment and domain information
>PRK05309 30S ribosomal protein S11; Validated Back     alignment and domain information
>TIGR03632 bact_S11 30S ribosomal protein S11 Back     alignment and domain information
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>CHL00041 rps11 ribosomal protein S11 Back     alignment and domain information
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed Back     alignment and domain information
>PTZ00129 40S ribosomal protein S14; Provisional Back     alignment and domain information
>TIGR03628 arch_S11P archaeal ribosomal protein S11P Back     alignment and domain information
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
3izr_Q304 Localization Of The Large Subunit Ribosomal Protein 1e-112
3u5e_D297 The Structure Of The Eukaryotic Ribosome At 3.0 A R 7e-69
3izs_Q297 Localization Of The Large Subunit Ribosomal Protein 7e-69
2zkr_n297 Structure Of A Mammalian Ribosomal 60s Subunit With 3e-67
3zf7_u308 High-resolution Cryo-electron Microscopy Structure 5e-66
3jyw_E237 Structure Of The 60s Proteins For Eukaryotic Riboso 5e-59
4a17_M301 T.Thermophila 60s Ribosomal Subunit In Complex With 4e-56
1s1i_E222 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-54
1s72_N187 Refined Crystal Structure Of The Haloarcula Marismo 5e-18
1ffk_K186 Crystal Structure Of The Large Ribosomal Subunit Fr 5e-18
3j21_O203 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-14
4gmn_B49 Structural Basis Of Rpl5 Recognition By Syo1 Length 1e-07
>pdb|3IZR|Q Chain Q, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 304 Back     alignment and structure 
Iteration: 1

 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/290 (69%), Positives = 222/290 (76%), Gaps = 42/290 (14%)
Query: 2   AFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDII 61
            FVK QK+ AYFKRFQVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFV   TNKDI 
Sbjct: 6   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 62
Query: 62  AQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEG 121
           AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEG
Sbjct: 63  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 122
Query: 122 NVE---------------------------------------GALDGGLDIPHSDKRFAG 142
           NVE                                       GALDGGLDIPHSDKRFAG
Sbjct: 123 NVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 182
Query: 143 FSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKK 202
           F KD KQLD+++HRKYIYGGHVA YM ++ E+EPEK+Q+HF+EY+KKGIDADG+E+LYKK
Sbjct: 183 FKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKK 242
Query: 203 VHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAV 252
           VHAAIRADPTM KS K  P  HKRYNLKKLTYE+RKA LVERLNALNS+ 
Sbjct: 243 VHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSA 292
>pdb|3U5E|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 297 Back     alignment and structure
>pdb|3IZS|Q Chain Q, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 297 Back     alignment and structure
>pdb|2ZKR|NN Chain n, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 297 Back     alignment and structure
>pdb|3ZF7|UU Chain u, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 308 Back     alignment and structure
>pdb|3JYW|E Chain E, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 237 Back     alignment and structure
>pdb|4A17|M Chain M, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 301 Back     alignment and structure
>pdb|1S1I|E Chain E, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 222 Back     alignment and structure
>pdb|1S72|N Chain N, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|1FFK|K Chain K, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|3J21|O Chain O, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 203 Back     alignment and structure
>pdb|4GMN|B Chain B, Structural Basis Of Rpl5 Recognition By Syo1 Length = 49 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
2zkr_n297 60S ribosomal protein L5; protein-RNA complex, 60S 1e-104
3iz5_Q304 60S ribosomal protein L5 (L18P); eukaryotic riboso 1e-104
3u5e_D297 60S ribosomal protein L5; translation, ribosome, r 1e-101
4a17_M301 RPL5, 60S ribosomal protein L5; eukaryotic ribosom 2e-98
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein- 4e-59
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 297 Back     alignment and structure
 Score =  303 bits (777), Expect = e-104
 Identities = 144/297 (48%), Positives = 186/297 (62%), Gaps = 41/297 (13%)

Query: 1   MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 61  IAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
           I QI  A I GD ++ A YAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YE
Sbjct: 61  ICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120

Query: 121 GNVE----------------------------------------GALDGGLDIPHSDKRF 140
           G VE                                        GA+DGGL IPHS KRF
Sbjct: 121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180

Query: 141 AGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALY 200
            G+  + K+ +AEVHRK+I G +VA YM  LME++ + Y+  F++YIK  +  D +E +Y
Sbjct: 181 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMY 240

Query: 201 KKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE 257
           KK HAAIR +P  +K  K   K  KR+N  K++  ++K ++ ++  +   A +   E
Sbjct: 241 KKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAE 296
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Length = 297 Back     alignment and structure
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Length = 301 Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Length = 187 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
3u5e_D297 60S ribosomal protein L5; translation, ribosome, r 100.0
4a17_M301 RPL5, 60S ribosomal protein L5; eukaryotic ribosom 100.0
2zkr_n297 60S ribosomal protein L5; protein-RNA complex, 60S 100.0
3iz5_Q304 60S ribosomal protein L5 (L18P); eukaryotic riboso 100.0
3j21_O203 50S ribosomal protein L18P; archaea, archaeal, KIN 100.0
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein- 100.0
3r8s_O116 50S ribosomal protein L18; protein biosynthesis, R 99.96
1ovy_A120 50S ribosomal protein L18; ribosome; NMR {Geobacil 99.95
3v2d_S112 50S ribosomal protein L18; ribosome associated inh 99.94
2zjr_L114 50S ribosomal protein L18; ribosome, large ribosom 99.92
3bbo_Q161 Ribosomal protein L18; large ribosomal subunit, sp 99.91
4gmn_B49 60S ribosomal protein L5-like protein; ARM, heat, 99.89
2vqe_K129 30S ribosomal protein S11, 30S ribosomal protein S 95.66
3j20_M137 30S ribosomal protein S11P; archaea, archaeal, KIN 95.36
3r8n_K117 30S ribosomal protein S11; protein biosynthesis, R 94.58
3bbn_K140 Ribosomal protein S11; small ribosomal subunit, sp 94.35
2xzm_K151 RPS14E; ribosome, translation; 3.93A {Tetrahymena 90.16
3u5c_O137 RP59A, 40S ribosomal protein S14-A; translation, r 89.84
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Back     alignment and structure
Probab=100.00  E-value=4.2e-108  Score=750.99  Aligned_cols=251  Identities=55%  Similarity=0.925  Sum_probs=240.1

Q ss_pred             CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 025111            1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYA   80 (257)
Q Consensus         1 m~fvk~~kn~ay~~ryqvk~rRRregkTdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS   80 (257)
                      |||||||||+|||+||||||||||||||||++|++||+||||||||++||||||+||+|||||||++.++||+|||||||
T Consensus         1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rLi~qdknKynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS   80 (297)
T 3u5e_D            1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYS   80 (297)
T ss_dssp             -CCTTSCCCHHHHHTCCCCCSTTTTTCCCHHHHHHHHCCCGGGTTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEG
T ss_pred             CCceeeeeccccccccccchhhhccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             ccccccccccCCccHHHHHHHHHHHHHHHHHhcCCCcccccccc------------------------------------
Q 025111           81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVE------------------------------------  124 (257)
Q Consensus        81 ~el~k~g~k~~~~N~~AAy~tG~LlA~ral~k~Gl~~~YhG~vk------------------------------------  124 (257)
                      +||+.+||+++++|++|||+||+|||+|||+++||+..|.|..+                                    
T Consensus        81 ~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVf  160 (297)
T 3u5e_D           81 HELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVF  160 (297)
T ss_dssp             GGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHH
T ss_pred             cchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccccceeccccccCCCCceeEEEecCCCccCccceeh
Confidence            99999999999999999999999999999999999999987542                                    


Q ss_pred             ----ccccccccccCCCCccCCcCCCCCCCCHHhhhcccccccHHHHHHhhcccChHHHHhhHHHHHHcCCCcchHHHHH
Q 025111          125 ----GALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALY  200 (257)
Q Consensus       125 ----GArD~GL~IPhs~~~fp~~~~~~k~~~ae~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik~gi~p~~~e~~y  200 (257)
                          ||+||||+||||+++|||||.|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+||
T Consensus       161 aalKGA~DgGL~IPhs~~~fpg~d~e~k~~~ae~~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~i~~~~~e~~y  240 (297)
T 3u5e_D          161 GALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIY  240 (297)
T ss_dssp             HHHHHHHHHTCBCCCCSTTSSSEETTTTEECHHHHHHHHTTHHHHHHHHHTTTTCHHHHHHTTHHHHHTTCCGGGHHHHH
T ss_pred             hhhhcccccCcccCCCcccccCccccccccCHHHHHHHhcCccHHHHHHHHhhhCHHHHHHHHHHHHHcCCChhHHHHHH
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCc-----ccccccCCCCCCHHHHHHHHHHHHHHHhhh
Q 025111          201 KKVHAAIRADPTMKKSEKPAP-----KEHKRYNLKKLTYEERKAKLVERLNALNSA  251 (257)
Q Consensus       201 ~~~~~~I~~~P~~~k~~k~~~-----~~~k~~~~~Klt~~qrk~rv~~K~~~~~~~  251 (257)
                      ++||++||+||++++++++.+     ..+|+||++|||++||++||+||+++|.+.
T Consensus       241 ~~~h~~Ir~~P~~~k~~~~k~~~~~~~~~k~~~~~klt~~qrk~~v~~k~~~~~~~  296 (297)
T 3u5e_D          241 TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQ  296 (297)
T ss_dssp             HHHHHHHHHCCSCCCCCCSSCHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhCcccccccccccccccchhccccCcccCCHHHHHHHHHHHHHHHhhc
Confidence            999999999999887766532     467899999999999999999999999864
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Back     alignment and structure
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Back     alignment and structure
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ... Back     alignment and structure
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Back     alignment and structure
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Back     alignment and structure
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Back     alignment and structure
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum} Back     alignment and structure
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Back     alignment and structure
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K* Back     alignment and structure
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 257
d1vqon1186 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {A 4e-43
d2gycm1113 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {E 0.004
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 186 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  142 bits (360), Expect = 4e-43
 Identities = 64/203 (31%), Positives = 90/203 (44%), Gaps = 39/203 (19%)

Query: 11  AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIV 70
           A   R++V  +RRRE +TDY  R+RL+        + K R V R +NK + AQ+V+    
Sbjct: 1   ATGPRYKVPMRRRREARTDYHQRLRLLK-------SGKPRLVARKSNKHVRAQLVTLGPN 53

Query: 71  GDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK----MLEMD-----DEYEG 121
           GD  LA+A++ +L  YG E    N  +AY TGLL   R  +       +D          
Sbjct: 54  GDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGS 113

Query: 122 NV----EGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED--- 174
            V    EGA+D GLDIPH+D   A +             +   G H+A Y   L E    
Sbjct: 114 KVFAIQEGAIDAGLDIPHNDDVLADW-------------QRTRGAHIAEYDEQLEEPLYS 160

Query: 175 ---EPEKYQSHFTEYIKKGIDAD 194
              +      HF E  +  +D D
Sbjct: 161 GDFDAADLPEHFDELRETLLDGD 183
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
d1vqon1186 Ribosomal protein L18 (L18p) {Archaeon Haloarcula 100.0
d2gycm1113 Ribosomal protein L18 (L18p) {Escherichia coli [Ta 99.91
d1ovya_97 Ribosomal protein L18 (L18p) {Bacillus stearotherm 99.89
d2j01s186 Ribosomal protein L18 (L18p) {Thermus thermophilus 99.84
d2zjrl1104 Ribosomal protein L18 (L18p) {Deinococcus radiodur 99.82
d2uubk1119 Ribosomal protein S11 {Thermus thermophilus [TaxId 95.81
d2qalk1117 Ribosomal protein S11 {Escherichia coli [TaxId: 56 94.73
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=9.7e-63  Score=426.16  Aligned_cols=170  Identities=35%  Similarity=0.543  Sum_probs=158.7

Q ss_pred             cccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccccccccccc
Q 025111           11 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEV   90 (257)
Q Consensus        11 ay~~ryqvk~rRRregkTdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~k~g~k~   90 (257)
                      |..+||||||||||||||||++|++|+.++       +||||||+||+|||||||+++++||.|||||||++|+++||+.
T Consensus         1 a~g~r~~vk~RRRRe~kT~y~~R~rl~~s~-------kpRLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~   73 (186)
T d1vqon1           1 ATGPRYKVPMRRRREARTDYHQRLRLLKSG-------KPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEA   73 (186)
T ss_dssp             CCSTTCCCCCHHHHTTCCCHHHHHHHHTTC-------SCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCS
T ss_pred             CCCcchhhHHHHHHhhhhhHHHHHHHhcCC-------CCeEEEEEeCCceEEEEEEecCCCCEEEEEEecchhhhhcccc
Confidence            578999999999999999999999999765       7999999999999999999888999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHHhcCCCc----------ccccccc----ccccccccccCCCCccCCcCCCCCCCCHHhhh
Q 025111           91 GLTNYAAAYCTGLLLARRVLKMLEMDD----------EYEGNVE----GALDGGLDIPHSDKRFAGFSKDGKQLDAEVHR  156 (257)
Q Consensus        91 ~~~N~~AAy~tG~LlA~ral~k~Gl~~----------~YhG~vk----GArD~GL~IPhs~~~fp~~~~~~k~~~ae~~~  156 (257)
                      +++|++|||+||+|||++|+++ |+.+          .|||+|+    ||||+||+||||+++||++             
T Consensus        74 ~~~N~~AAy~~G~liA~ra~~~-gi~~vvfD~G~~~~~yhgRV~A~akgard~GL~Iph~~~~~p~~-------------  139 (186)
T d1vqon1          74 PTGNMPSAYLTGLLAGLRAQEA-GVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADW-------------  139 (186)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHHT-TCCBCEEECTTSCCCTTCHHHHHHHHHHHTTCBCCCCGGGSCCH-------------
T ss_pred             CccHHHHHHHhHHHHHHHHHhh-cccceEEeeCCCCCCccchHHHHHHHHHhcCccCCCCCccCCCc-------------
Confidence            9999999999999999999997 7754          8999985    9999999999999999995             


Q ss_pred             cccccccHHHHHHhhcccChHHHHhhHHHHHHcCCCcchHHHHHHHHHHHHhcCCC
Q 025111          157 KYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPT  212 (257)
Q Consensus       157 ~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik~gi~p~~~e~~y~~~~~~I~~~P~  212 (257)
                      +||+|+|||+||+.|+||           |++++++|++||+||++++++|.+|+.
T Consensus       140 ~ri~G~hia~y~~~l~~e-----------~~~~~~~~~~~~~~f~~~~~~i~~~~i  184 (186)
T d1vqon1         140 QRTRGAHIAEYDEQLEEP-----------LYSGDFDAADLPEHFDELRETLLDGDI  184 (186)
T ss_dssp             HHHHTHHHHHHHHSCSSC-----------SSSSCSCSSCCHHHHHHHHHHHHSSSC
T ss_pred             ccccCHhHHHHHHHHHHH-----------HhhcCCCHHHHHHHHHHHHHhcccccc
Confidence            799999999999999975           445556999999999999999999985
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure