Citrus Sinensis ID: 025113

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcccccEEccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHccEEEEccccccHHHHHHHHHHHHHHcccEEEcccccccccHHHHHHcHHHHHHccccccccEEEEccccccccccHHHHHHHHccccEEEEEccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHccccEEEEccccccccccEEEEEHHHccccEccHHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHHHHccEcccccccHHHHHHHHHcHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccHHHEEEEEccHHHHHHHHHHHHHcccEEc
Coil and Loop (DISEMBL)
MEDNNAIKRDVTEligntpmvyLNNVVDGCVARIAAKLetmepcssvkDRIAYSMIKdaedkglitpgkttlievtsgntgVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILkktpdgyllrqfenpanpkihyettgpeiwqdsggkvdAFISgigtggtvtgagrflkennpdikvygvepsesavlnggqRGLFIFISYLFRSfvlvddgavvHLHNYLLLHIFTLVC
Flexible Loop (DISEMBL)
mednnaikrdvteligntpmvyLNNVVDGCVARIAAKletmepcssvKDRIAYSMIKdaedkglitpGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC
Low Complexity Region (SEG)
MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFeeilekgeeilkkTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISgigtggtvtgagRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC
Disordered region (IsUnstruct)
*********DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV*
Disordered Region (DISOPRED)
****NAI**DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC
Disordered Region (DISEMBL)
********RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC
Disordered Region (DISPRO)
***NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q43317	325	Cysteine synthase OS=Citr	N/A	no	0.848	0.670	0.720	1e-83
F4K5T2	323	Bifunctional cystathionin	no	no	0.859	0.684	0.728	8e-83
Q9XEA6	321	Cysteine synthase OS=Oryz	no	no	0.836	0.669	0.706	4e-82
P38076	325	Cysteine synthase OS=Trit	N/A	no	0.840	0.664	0.685	9e-82
Q9XEA8	325	Cysteine synthase OS=Oryz	no	no	0.856	0.676	0.681	4e-81
P32260	383	Cysteine synthase, chloro	N/A	no	0.836	0.561	0.683	6e-81
O81154	325	Cysteine synthase OS=Sola	N/A	no	0.836	0.661	0.706	8e-81
Q00834	325	Cysteine synthase OS=Spin	N/A	no	0.859	0.68	0.683	9e-81
P80608	325	Cysteine synthase OS=Zea	N/A	no	0.856	0.676	0.677	1e-80
O23733	322	Cysteine synthase OS=Bras	N/A	no	0.836	0.667	0.697	2e-80

>sp|Q43317|CYSK_CITLA Cysteine synthase OS=Citrullus lanatus PE=1 SV=1

 Score =  309 bits (792), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 157/218 (72%), Positives = 188/218 (86%)

Query: 4   NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKG 63
            + I +DVTELIGNTP+VYLN VVDGCVAR+AAKLE MEPCSSVKDRI YSMI DAE+KG
Sbjct: 5   KSTIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKG 64

Query: 64  LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123
           LITPG++ LIE TSGNTG+GLAFIAAA+GY LII MP++ S+ERR +LRA GAE++L D 
Sbjct: 65  LITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELVLTDP 124

Query: 124 ALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIG 183
           A   +  ++K EEI  KTP+ Y+L+QFENPANPKIHYETTGPEIW+ SGGK+DA +SGIG
Sbjct: 125 ARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWRGSGGKIDALVSGIG 184

Query: 184 TGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           TGGTVTGAG++LKE NP+IK+YGVEP ESA+L+GG+ G
Sbjct: 185 TGGTVTGAGKYLKEQNPNIKLYGVEPVESAILSGGKPG 222

Produces L-cysteine from O-acetyl-L-serine and hydrogen sulfide. Can also use pyrazole and 3,4-dihydroxypyridine instead of the hydrogen sulfide to produce two plant specific non-protein amino acids beta-pyrazolylalanine and L-mimosine.
Citrullus lanatus (taxid: 3654)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 2

>sp|F4K5T2|CGL_ARATH Bifunctional cystathionine gamma-lyase/cysteine synthase OS=Arabidopsis thaliana GN=DES1 PE=1 SV=1

 Score =  306 bits (785), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 161/221 (72%), Positives = 185/221 (83%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
           MED   IK DVTELIGNTPMVYLN +VDGCVARIAAKLE MEPCSS+KDRIAYSMIKDAE
Sbjct: 1   MEDRVLIKNDVTELIGNTPMVYLNKIVDGCVARIAAKLEMMEPCSSIKDRIAYSMIKDAE 60

Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
           DKGLITPGK+TLIE T GNTG+GLA I A+RGY +I++MPST S+ERRI+LRALGAE+ L
Sbjct: 61  DKGLITPGKSTLIEATGGNTGIGLASIGASRGYKVILLMPSTMSLERRIILRALGAEVHL 120

Query: 121 ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
            D ++  +  LEK +EIL KTP GY+  QF NP NP+IHY TTGPEIW+DS GKVD  ++
Sbjct: 121 TDISIGIKGQLEKAKEILSKTPGGYIPHQFINPENPEIHYRTTGPEIWRDSAGKVDILVA 180

Query: 181 GIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           G+GTGGTVTG G+FLKE N DIKV  VEPSESAVL+GG+ G
Sbjct: 181 GVGTGGTVTGTGKFLKEKNKDIKVCVVEPSESAVLSGGKPG 221

Involved in maintaining Cys homeostasis through the desulfuration of L-cysteine. Probably unable to interact with SAT and to form the decameric Cys synthase complex (CSC) and is therefore not an enzymatically true OASTL protein.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9XEA6|CYSK1_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2

 Score =  304 bits (778), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 152/215 (70%), Positives = 185/215 (86%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I +DVTELIGNTP+VYLN V DGCV R+AAKLE+MEPCSSVKDRI YSMI DAE+KGLIT
Sbjct: 5   IAKDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLIT 64

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PGK+ LIE TSGNTG+GLAF+AAA+GY L++ MP++ SMERRI+L+A GAE+IL D  L 
Sbjct: 65  PGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLG 124

Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
            +  ++K EE+  KT + ++L+QFENPANPKIHYETTGPEIW+ +GGKVD  +SGIGTGG
Sbjct: 125 MKGAVQKAEELAAKTNNSFILQQFENPANPKIHYETTGPEIWKGTGGKVDGLVSGIGTGG 184

Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           T+TGAGR+L+E NPDIK+YGVEP ESAVL+GG+ G
Sbjct: 185 TITGAGRYLREQNPDIKIYGVEPVESAVLSGGKPG 219

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|P38076|CYSK_WHEAT Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1

 Score =  303 bits (776), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 148/216 (68%), Positives = 184/216 (85%)

Query: 6   AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
           AI +DVTELIGNTP+VYLN V DGCV R+AAKLE+MEPCSSVKDRI YSMI DAE+KG I
Sbjct: 8   AIAKDVTELIGNTPLVYLNKVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGFI 67

Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
            PGK+ LIE TSGNTG+GLAF+AAA+GY L++ MP++ SMERRI+L+A GAE+IL D  L
Sbjct: 68  VPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLL 127

Query: 126 RFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTG 185
             +  ++K EE+  KTP+ Y+L+QFEN ANPKIHYETTGPEIW+ +GGK+D  +SGIGTG
Sbjct: 128 GMKGAVQKAEELAAKTPNSYILQQFENAANPKIHYETTGPEIWKGTGGKIDGLVSGIGTG 187

Query: 186 GTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           GT+TG G++L+E NP+IK+YGVEP+ESA+LNGG+ G
Sbjct: 188 GTITGTGKYLQEQNPNIKLYGVEPTESAILNGGKPG 223

Triticum aestivum (taxid: 4565)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|Q9XEA8|CYSK2_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1

 Score =  301 bits (770), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 150/220 (68%), Positives = 184/220 (83%)

Query: 2   EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAED 61
           E   +I  DVT LIGNTP+VYLN VVDGC A+IAAKLE MEPCSSVKDRI YSMI DAE+
Sbjct: 3   ESGQSIASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEE 62

Query: 62  KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121
           KGLITPGK+ LIE TSGNTG+GLAF+AAA+GY LI+ MP++ SMERRI+L+A GAE++L 
Sbjct: 63  KGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLT 122

Query: 122 DSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISG 181
           D  L  +  ++K +E+  K P+ Y+L+QFENPANPKIHYETTGPEIW+ + GKVD  +SG
Sbjct: 123 DPLLGMKGAIQKADELAAKMPNSYILQQFENPANPKIHYETTGPEIWKATAGKVDILVSG 182

Query: 182 IGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           IGTGGTVTG G++LKE NP+IK+YGVEP+ESA+L+GG+ G
Sbjct: 183 IGTGGTVTGTGKYLKEQNPEIKIYGVEPTESAILSGGRPG 222

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|P32260|CYSKP_SPIOL Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2

 Score =  300 bits (768), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 147/215 (68%), Positives = 181/215 (84%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I  DV++LIG TPMVYLNNV  G VA IAAKLE+MEPC SVKDRI YSMI DAE KG+IT
Sbjct: 67  IAEDVSQLIGKTPMVYLNNVSKGSVANIAAKLESMEPCCSVKDRIGYSMIDDAEQKGVIT 126

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PGKTTL+E TSGNTG+GLAFIAAARGY + + MP++ SMERR++L+A GAE++L D A  
Sbjct: 127 PGKTTLVEPTSGNTGIGLAFIAAARGYKITLTMPASMSMERRVILKAFGAELVLTDPAKG 186

Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
            +  +EK EEILKKTPD Y+L+QF+NPANPKIHYETTGPEIW+D+ GKVD F++GIGTGG
Sbjct: 187 MKGAVEKAEEILKKTPDSYMLQQFDNPANPKIHYETTGPEIWEDTKGKVDIFVAGIGTGG 246

Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           T++G GR+LKE NP ++V G+EP+ES +L+GG+ G
Sbjct: 247 TISGVGRYLKERNPGVQVIGIEPTESNILSGGKPG 281

Spinacia oleracea (taxid: 3562)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|O81154|CYSK_SOLTU Cysteine synthase OS=Solanum tuberosum PE=2 SV=1

 Score =  300 bits (767), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 152/215 (70%), Positives = 184/215 (85%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I +DVTELIGNTP+VYLNNVVDGCVAR+AAKLE+MEPCSSVKDRI YSMI DAE+KGLI 
Sbjct: 8   IAKDVTELIGNTPLVYLNNVVDGCVARVAAKLESMEPCSSVKDRIGYSMITDAEEKGLIK 67

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PG++ LIE TSGNTGVGLAF+AAA+GY LII MPS+ S+ERRI+LR   +E++L D A  
Sbjct: 68  PGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERRIILRGFRSELVLTDPAKG 127

Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
            +  + K EEI  KTP+ Y+L+QFENPANPKIHYETTGPEIW+ S GKVDA  SGIGTGG
Sbjct: 128 MKGAISKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWKGSNGKVDALASGIGTGG 187

Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           T+TG+G++L+E NP++K+YGVEP ESA+L+GG+ G
Sbjct: 188 TITGSGKYLREQNPNVKLYGVEPVESAILSGGKPG 222

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|Q00834|CYSK_SPIOL Cysteine synthase OS=Spinacia oleracea PE=1 SV=1

 Score =  300 bits (767), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 151/221 (68%), Positives = 185/221 (83%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
           +E+   I +DVTELIG TP+VYLN V DGCVAR+AAKLE MEPCSSVKDRI +SMI DAE
Sbjct: 2   VEEKAFIAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAE 61

Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
             GLITPG++ LIE TSGNTG+GLAFIAAA+GY LII MP++ S+ERR +LRA GAE+IL
Sbjct: 62  KSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELIL 121

Query: 121 ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
            D A   +  ++K EEI  KTP+ Y+L+QFENPANPK+HYETTGPEIW+ +GGK+D F+S
Sbjct: 122 TDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKVHYETTGPEIWKGTGGKIDIFVS 181

Query: 181 GIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           GIGTGGT+TGAG++LKE NPD+K+ G+EP ESAVL+GG+ G
Sbjct: 182 GIGTGGTITGAGKYLKEQNPDVKLIGLEPVESAVLSGGKPG 222

Spinacia oleracea (taxid: 3562)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|P80608|CYSK_MAIZE Cysteine synthase OS=Zea mays PE=1 SV=2

 Score =  299 bits (766), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/220 (67%), Positives = 183/220 (83%)

Query: 2   EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAED 61
           E + +I +DVTELIGNTP+VYLN V DGCV R  AKLE+MEPCSSVKDRI YSMI DAE+
Sbjct: 3   EASPSIAKDVTELIGNTPLVYLNKVTDGCVGRSRAKLESMEPCSSVKDRIGYSMITDAEE 62

Query: 62  KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121
           KGLITPG + LIE TSGNTG+GLAF+AAA+GY L + MP++ SMERRI+L+A GAE++L 
Sbjct: 63  KGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERRIILKAFGAELVLT 122

Query: 122 DSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISG 181
           D  L  +  ++K EEI  KTP+ Y+L+QFENPANPKIHYETTGPEIW+ + GK+D  +SG
Sbjct: 123 DPLLGMKGAVKKAEEIQAKTPNSYILQQFENPANPKIHYETTGPEIWKATAGKIDGLVSG 182

Query: 182 IGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           IGTGGT+TG GR+L+E NP++K+YGVEP ESAVLNGG+ G
Sbjct: 183 IGTGGTITGTGRYLREQNPNVKLYGVEPVESAVLNGGKPG 222

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|O23733|CYSK1_BRAJU Cysteine synthase OS=Brassica juncea PE=2 SV=1

 Score =  298 bits (764), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 150/215 (69%), Positives = 182/215 (84%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI 
Sbjct: 5   IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIK 64

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S+ERRI+L A G E++L D A  
Sbjct: 65  PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPAKG 124

Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
            +  + K EEIL KTP+GY+L+QFENPANPKIHYETTGPEIW+ + GK+D F+SGIGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTDGKIDGFVSGIGTGG 184

Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           T+TGAG++LKE NP++K+YGVEP ESA+L+GG+ G
Sbjct: 185 TITGAGKYLKEQNPNVKLYGVEPIESAILSGGKPG 219

Brassica juncea (taxid: 3707)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
359487832	342	PREDICTED: cysteine synthase [Vitis vini	0.859	0.646	0.755	3e-90
363814498	324	uncharacterized protein LOC100775420 [Gl	0.856	0.679	0.709	7e-90
255542388	332	cysteine synthase, putative [Ricinus com	0.859	0.665	0.791	3e-89
255636625	242	unknown [Glycine max]	0.859	0.913	0.705	9e-89
255542384	256	cysteine synthase, putative [Ricinus com	0.859	0.863	0.773	2e-88
351724467	324	cysteine synthase [Glycine max] gi|12650	0.856	0.679	0.7	2e-88
224130748	331	predicted protein [Populus trichocarpa]	0.859	0.667	0.758	5e-88
297808839	324	cysteine synthase [Arabidopsis lyrata su	0.859	0.682	0.714	3e-87
224130744	323	predicted protein [Populus trichocarpa]	0.859	0.684	0.755	2e-86
356557036	321	PREDICTED: cysteine synthase-like [Glyci	0.840	0.672	0.768	2e-86

>gi|359487832|ref|XP_002275688.2| PREDICTED: cysteine synthase [Vitis vinifera] gi|298204914|emb|CBI34221.3| unnamed protein product [Vitis vinifera]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/221 (75%), Positives = 194/221 (87%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
           MED +AI +D+TELIG TPMVYLN +VDGCVARIAAKLE MEPCSSVKDRI YSMIKDAE
Sbjct: 1   MEDKSAIAKDITELIGKTPMVYLNKIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIKDAE 60

Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
           DKGLITPGKT LIE TSGNTG+GLAFIAA +GY L+IVMP++ S+ERRI+LRA GAE+I+
Sbjct: 61  DKGLITPGKTVLIEPTSGNTGIGLAFIAAVKGYKLVIVMPASFSLERRIILRAFGAELII 120

Query: 121 ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
            D A  F+E L + EE+LKK P+GY+L+QFENPANP+IHYETTGPEIW+ SGGKVDA +S
Sbjct: 121 TDPAKGFKEQLRRIEELLKKIPNGYVLQQFENPANPRIHYETTGPEIWEGSGGKVDALVS 180

Query: 181 GIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           GIGTGGT +GAG+FLKE NP+IKVYGVEP ESAVL+GG+  
Sbjct: 181 GIGTGGTASGAGKFLKEKNPEIKVYGVEPVESAVLSGGEHA 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814498|ref|NP_001242884.1| uncharacterized protein LOC100775420 [Glycine max] gi|255645072|gb|ACU23035.1| unknown [Glycine max]

 Score =  335 bits (860), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 156/220 (70%), Positives = 185/220 (84%)

Query: 2   EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAED 61
           E   AIK+D TEL+GNTPMV+LNN+V GCVARIAAKLE M+ C SVKDRIA SMI+DAE 
Sbjct: 3   EPQCAIKKDATELVGNTPMVFLNNIVVGCVARIAAKLEYMQACCSVKDRIALSMIEDAEK 62

Query: 62  KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121
           KGLITPGKT L+E TSGNTG+GLAFIAA RGY L + MPS  S+ER+I+LRA GAE+ L 
Sbjct: 63  KGLITPGKTVLVEYTSGNTGIGLAFIAALRGYKLQVTMPSYVSLERKIILRAFGAEVYLT 122

Query: 122 DSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISG 181
           D A   + +++K EE+L KTPD ++L QFENPANP IHYETTGPEIW+DSGGK+DA ++G
Sbjct: 123 DPAKGIDGVIQKAEELLAKTPDSFMLNQFENPANPNIHYETTGPEIWRDSGGKIDALVAG 182

Query: 182 IGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           IGTGG++ GAGRFL+E NPDIK+YGVEP+ESAVLNGGQ G
Sbjct: 183 IGTGGSIAGAGRFLREKNPDIKLYGVEPAESAVLNGGQPG 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542388|ref|XP_002512257.1| cysteine synthase, putative [Ricinus communis] gi|223548218|gb|EEF49709.1| cysteine synthase, putative [Ricinus communis]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 175/221 (79%), Positives = 194/221 (87%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
           ME N  IK+DVTELIGNTPMVYLNN+VDGCVARIAAKLE MEP SSVKDRIAYSMIKDAE
Sbjct: 10  MEANCEIKKDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPVSSVKDRIAYSMIKDAE 69

Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
           DKGLITPGKT LIE TSGNTG+GLA IAA +GY +I+ MP++ S+ERRIVLRALGAE+ L
Sbjct: 70  DKGLITPGKTVLIEPTSGNTGIGLAAIAAMKGYKIILTMPASMSLERRIVLRALGAEVYL 129

Query: 121 ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
            D A  F  +LEK +EIL KTP+GY+ RQFENPANPKIHYETTGPEIW+DSGGKVDA ++
Sbjct: 130 TDPAKGFNGVLEKTDEILNKTPNGYVFRQFENPANPKIHYETTGPEIWRDSGGKVDALVA 189

Query: 181 GIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           GIGTGGTVTGAGRFLKE N DIKVYGVEP ESA+LNGG+ G
Sbjct: 190 GIGTGGTVTGAGRFLKEKNSDIKVYGVEPVESAILNGGRPG 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636625|gb|ACU18650.1| unknown [Glycine max]

 Score =  332 bits (851), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 156/221 (70%), Positives = 183/221 (82%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
           ME    IK+D TELIGNTPMVYLNN+VDGCVARIAAKLE M+ C SVKDRIA SMI+DAE
Sbjct: 1   MEPQCRIKKDATELIGNTPMVYLNNIVDGCVARIAAKLEYMQACCSVKDRIALSMIEDAE 60

Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
            KGLITPGKT L+E TSGNTG+GLAFIAA RGY L + MPS  S+ER+I+LRA GAE+ L
Sbjct: 61  KKGLITPGKTVLVEYTSGNTGIGLAFIAALRGYKLQVTMPSYVSLERKIILRAFGAEVYL 120

Query: 121 ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
            D A   + +++K EE++ KTPD ++L QFENPANP IHY TTGPEIW+DSG K+DA +S
Sbjct: 121 TDPAKGIDGVIQKAEELIAKTPDSFMLNQFENPANPNIHYGTTGPEIWRDSGEKIDALVS 180

Query: 181 GIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           GIGTGG++ GAGRFL+E NPDIK+YGVEP+ES VLNGGQ G
Sbjct: 181 GIGTGGSIAGAGRFLREKNPDIKLYGVEPAESPVLNGGQPG 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542384|ref|XP_002512255.1| cysteine synthase, putative [Ricinus communis] gi|223548216|gb|EEF49707.1| cysteine synthase, putative [Ricinus communis]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/221 (77%), Positives = 196/221 (88%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
           MED  AIK+DVTELIGNTPMVYLNN+++GC  RIAAKLE MEPC SVKDRIAYSMIKDAE
Sbjct: 1   MEDKCAIKKDVTELIGNTPMVYLNNILEGCDVRIAAKLENMEPCYSVKDRIAYSMIKDAE 60

Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
           +KGLITPGKT L+EVTSGNTG+ +A IAAA+GY +IIVMP+  S+ERRIVLRA GAE+ L
Sbjct: 61  EKGLITPGKTVLVEVTSGNTGIAMASIAAAKGYKIIIVMPAFKSLERRIVLRAFGAELHL 120

Query: 121 ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
            D    ++EIL+K EEI+K TP+GY+L QFENPANPKIHYETTGPEIW+DSGGKVDA ++
Sbjct: 121 TDPNKGYDEILKKAEEIVKNTPNGYMLHQFENPANPKIHYETTGPEIWKDSGGKVDALVA 180

Query: 181 GIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           GIGTGGTVTGAG+FLKE NPDIKVYGVEP+ESAVLNGG+ G
Sbjct: 181 GIGTGGTVTGAGKFLKEKNPDIKVYGVEPAESAVLNGGKPG 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724467|ref|NP_001235267.1| cysteine synthase [Glycine max] gi|126508784|gb|ABO15567.1| cysteine synthase [Glycine max]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/220 (70%), Positives = 183/220 (83%)

Query: 2   EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAED 61
           E   AIK+D TEL+GNTPMV+LNN+V GCVARIAAKLE M+ C SVKDRIA SMI+DAE 
Sbjct: 3   EPQCAIKKDATELVGNTPMVFLNNIVVGCVARIAAKLEYMQACCSVKDRIALSMIEDAEK 62

Query: 62  KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121
           KGLITPGKT L+E TSGNTG+GLAFIAA RGY L + MPS  S+ER+I+LRA GAE+ L 
Sbjct: 63  KGLITPGKTVLVEYTSGNTGIGLAFIAALRGYKLQVTMPSYVSLERKIILRAFGAEVYLT 122

Query: 122 DSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISG 181
           D A   + +++K EE++ KTPD ++L QFENPANP IHYETTGPEIW+DSG K+DA +SG
Sbjct: 123 DPAKGIDGVIQKAEELIAKTPDSFMLNQFENPANPNIHYETTGPEIWRDSGEKIDALVSG 182

Query: 182 IGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           IGTGG++ GAGRFL+E NPDIK+YGVEP+ES VLNGGQ G
Sbjct: 183 IGTGGSIAGAGRFLREKNPDIKLYGVEPAESPVLNGGQPG 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130748|ref|XP_002328366.1| predicted protein [Populus trichocarpa] gi|222838081|gb|EEE76446.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 173/228 (75%), Positives = 197/228 (86%), Gaps = 7/228 (3%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDR-------IAY 53
           MEDN AIK+DVTELIGNTPMVYLNNV DGCVARIAAKLE MEP SSVKDR       I +
Sbjct: 1   MEDNCAIKKDVTELIGNTPMVYLNNVADGCVARIAAKLEMMEPLSSVKDRHATCSLKIGH 60

Query: 54  SMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA 113
           SMIKDAEDKGLITPGKT LIE TSGNTG+ +AFIAA +GY  I++MP+T S+ERRIVLRA
Sbjct: 61  SMIKDAEDKGLITPGKTVLIEPTSGNTGIAVAFIAAVKGYKAILIMPATMSLERRIVLRA 120

Query: 114 LGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG 173
           LGAE+ L D A  F+ +L+K +EIL  TP+GY+LRQFENPANP+IHYETTGPEIW+DS G
Sbjct: 121 LGAEVCLTDPAKGFQGVLDKSDEILNNTPNGYMLRQFENPANPQIHYETTGPEIWKDSRG 180

Query: 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           KVDAF++GIGTGGTVTGAG+FLKE NP+IKVYGVEP+ESAVLNGG+ G
Sbjct: 181 KVDAFVAGIGTGGTVTGAGKFLKEKNPEIKVYGVEPTESAVLNGGKPG 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808839|ref|XP_002872303.1| cysteine synthase [Arabidopsis lyrata subsp. lyrata] gi|297318140|gb|EFH48562.1| cysteine synthase [Arabidopsis lyrata subsp. lyrata]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/221 (71%), Positives = 187/221 (84%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
           MED  +IK DVTELIGNTPMVYLNNVVDGCVARIAAKLE MEP SSVKDRIAYSMIKDAE
Sbjct: 1   MEDRCSIKNDVTELIGNTPMVYLNNVVDGCVARIAAKLEMMEPFSSVKDRIAYSMIKDAE 60

Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
           +KGLITPGK+TLIE T+GNTG+GLA + AARGY +I+VMPST S+ERRI+L+ALGAE+ L
Sbjct: 61  EKGLITPGKSTLIEPTAGNTGIGLACVGAARGYKVILVMPSTMSLERRIILKALGAELHL 120

Query: 121 ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
           ++  +  + +LEK + IL KTP GY+ +QFEN ANP+IHY+TTGPEIW+DS GKVD  ++
Sbjct: 121 SEQRIGLKGMLEKTDAILSKTPGGYIPQQFENAANPEIHYQTTGPEIWRDSAGKVDILVA 180

Query: 181 GIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           G+GTGGT +G G+FLKE N DIKV  VEP ES VL+GGQ G
Sbjct: 181 GVGTGGTASGVGKFLKEQNKDIKVCVVEPEESPVLSGGQPG 221

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130744|ref|XP_002328365.1| predicted protein [Populus trichocarpa] gi|222838080|gb|EEE76445.1| predicted protein [Populus trichocarpa]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/221 (75%), Positives = 193/221 (87%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
           MED  AIK+DVTELIGNTPMVYLNN++DGCVA IAAKLE MEPC SVKDRIAYSMIKDAE
Sbjct: 1   MEDKCAIKKDVTELIGNTPMVYLNNILDGCVACIAAKLEMMEPCFSVKDRIAYSMIKDAE 60

Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
           DKGLITPGKT LIE+TSGNTG+ LA IAAA+GY +II+MP+  S+ERRIV+ A GAE+ L
Sbjct: 61  DKGLITPGKTVLIELTSGNTGIALASIAAAKGYKVIIIMPAAKSIERRIVMLAFGAELHL 120

Query: 121 ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
            D  + ++E+L KGEEILK TP+GY+L QFENPANP+IHYETTGPEIW+DS GKVD  ++
Sbjct: 121 TDPTMGYKEVLRKGEEILKVTPNGYMLHQFENPANPRIHYETTGPEIWKDSAGKVDVLVA 180

Query: 181 GIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           GIGTGGTVTGAG+FLKE  P+IKVYGVEP+ESAVLNG + G
Sbjct: 181 GIGTGGTVTGAGKFLKEKKPEIKVYGVEPAESAVLNGEKPG 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557036|ref|XP_003546824.1| PREDICTED: cysteine synthase-like [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/216 (76%), Positives = 191/216 (88%)

Query: 6   AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
           AIK+DVTELIGNTPMVYLN VV+GCVARIAAKLE+MEPCSSVKDR+A SMIKDAEDKGLI
Sbjct: 4   AIKQDVTELIGNTPMVYLNKVVEGCVARIAAKLESMEPCSSVKDRLALSMIKDAEDKGLI 63

Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
           TPGKT L+E TSGNTG+GLAFIAA +GY LI+ MP++ S+ERR+VLRALGAE+ L D A 
Sbjct: 64  TPGKTVLVETTSGNTGIGLAFIAALKGYRLILAMPASMSLERRVVLRALGAELHLTDPAK 123

Query: 126 RFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTG 185
            F+  L+K EE+L++TPD ++  QFENPANPKIHYETTGPEIW DSGGKVDA ++GIGTG
Sbjct: 124 GFKGSLQKAEELLRETPDAFMPHQFENPANPKIHYETTGPEIWTDSGGKVDALVAGIGTG 183

Query: 186 GTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           GT+TGAG+FLKE NP IKVYGVEP ESAVL+GGQ G
Sbjct: 184 GTITGAGKFLKERNPKIKVYGVEPVESAVLSGGQPG 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2143814	323	CYSD2 "cysteine synthase D2" [	0.859	0.684	0.669	1.5e-74
TAIR|locus:2143754	323	DES1 "L-cysteine desulfhydrase	0.859	0.684	0.651	9.6e-73
TAIR|locus:2114804	324	CYSD1 "cysteine synthase D1" [	0.856	0.679	0.618	7.7e-71
TAIR|locus:2130419	322	OASA1 "O-acetylserine (thiol)	0.836	0.667	0.618	7e-70
TAIR|locus:2043964	392	OASB "O-acetylserine (thiol) l	0.836	0.548	0.586	4e-67
TAIR|locus:2080417	433	OASC "O-acetylserine (thiol) l	0.852	0.505	0.579	1.7e-66
TAIR|locus:2096454	404	CS26 "cysteine synthase 26" [A	0.972	0.618	0.496	4.5e-59
UNIPROTKB|Q43153	368	CYSC "Bifunctional L-3-cyanoal	0.836	0.584	0.520	1.5e-58
UNIPROTKB|Q76MX2	351	PCAS-1 "Bifunctional L-3-cyano	0.836	0.612	0.516	2.5e-58
UNIPROTKB|Q1KLZ2	376	CAS1 "L-3-cyanoalanine synthas	0.836	0.571	0.511	5.1e-58

TAIR|locus:2143814 CYSD2 "cysteine synthase D2" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 148/221 (66%), Positives = 168/221 (76%)

Query:     1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
             MED   IK D+TELIGNTPMVYLNNVVDGCVARIAAKLE MEPCSSVKDRIAYSMIKDAE
Sbjct:     1 MEDRCLIKNDITELIGNTPMVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAE 60

Query:    61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
             DKGLITPGK+TLIE T+GNTG+GLA + AARGY +I+VMPST S+ERRI+LRALGAE+ L
Sbjct:    61 DKGLITPGKSTLIEPTAGNTGIGLACMGAARGYKVILVMPSTMSLERRIILRALGAELHL 120

Query:   121 ADSALRFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
             +D  +               TP GY+ +QFENPANP+IHY TTGPEIW+DS GKVD  ++
Sbjct:   121 SDQRIGLKGMLEKTEAILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVA 180

Query:   181 XXXXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                         +FLKE N DIKV  VEP ES VL+GGQ G
Sbjct:   181 GVGTGGTATGVGKFLKEQNKDIKVCVVEPVESPVLSGGQPG 221

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;ISS;IMP

GO:0005739 "mitochondrion" evidence=ISM

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

TAIR|locus:2143754 DES1 "L-cysteine desulfhydrase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 144/221 (65%), Positives = 165/221 (74%)

Query:     1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
             MED   IK DVTELIGNTPMVYLN +VDGCVARIAAKLE MEPCSS+KDRIAYSMIKDAE
Sbjct:     1 MEDRVLIKNDVTELIGNTPMVYLNKIVDGCVARIAAKLEMMEPCSSIKDRIAYSMIKDAE 60

Query:    61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
             DKGLITPGK+TLIE T GNTG+GLA I A+RGY +I++MPST S+ERRI+LRALGAE+ L
Sbjct:    61 DKGLITPGKSTLIEATGGNTGIGLASIGASRGYKVILLMPSTMSLERRIILRALGAEVHL 120

Query:   121 ADSALRFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
              D ++               TP GY+  QF NP NP+IHY TTGPEIW+DS GKVD  ++
Sbjct:   121 TDISIGIKGQLEKAKEILSKTPGGYIPHQFINPENPEIHYRTTGPEIWRDSAGKVDILVA 180

Query:   181 XXXXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                         +FLKE N DIKV  VEPSESAVL+GG+ G
Sbjct:   181 GVGTGGTVTGTGKFLKEKNKDIKVCVVEPSESAVLSGGKPG 221

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

TAIR|locus:2114804 CYSD1 "cysteine synthase D1" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 136/220 (61%), Positives = 164/220 (74%)

Query:     2 EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAED 61
             ED  +IK D T+LIGNTPMVYLNN+VDGCVARIAAKLE MEPCSSVK+RIAY MIKDAED
Sbjct:     3 EDRCSIKDDATQLIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKERIAYGMIKDAED 62

Query:    62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121
             KGLITPGK+TLIE TSGNTG+GLAFI AA+GY +++ MPS+ S+ER+I+L ALGAE+ L 
Sbjct:    63 KGLITPGKSTLIEATSGNTGIGLAFIGAAKGYKVVLTMPSSMSLERKIILLALGAEVHLT 122

Query:   122 DSALRFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISX 181
             D +                 PD  +L QF+NP+NP+ HY TTGPEIW+DS G+VD  ++ 
Sbjct:   123 DPSKGVQGIIDKAEEICSKNPDSIMLEQFKNPSNPQTHYRTTGPEIWRDSAGEVDILVAG 182

Query:   182 XXXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                        RFLKE N D KVYGVEP+ESAV++GG+ G
Sbjct:   183 VGTGGTLSGSGRFLKEKNKDFKVYGVEPTESAVISGGKPG 222

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;ISS;IDA;IMP

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=ISS;RCA;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009069 "serine family amino acid metabolic process" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2130419 OASA1 "O-acetylserine (thiol) lyase (OAS-TL) isoform A1" [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 133/215 (61%), Positives = 161/215 (74%)

Query:     7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
             I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI 
Sbjct:     5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64

Query:    67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
             PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A  
Sbjct:    65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124

Query:   127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                           TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S      
Sbjct:   125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184

Query:   187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                   ++LKE N ++K+YGVEP ESA+L+GG+ G
Sbjct:   185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA;IMP;IDA

GO:0007568 "aging" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2043964 OASB "O-acetylserine (thiol) lyase B" [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 126/215 (58%), Positives = 160/215 (74%)

Query:     7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
             I  +  +LIG TPMVYLNNVV GCVA +AAKLE MEPC SVKDRI YSMI DAE+KGLIT
Sbjct:    75 IADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGYSMITDAEEKGLIT 134

Query:    67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
             PGK+ L+E TSGNTG+GLAFIAA++GY LI+ MP++ S+ERR++LRA GAE++L + A  
Sbjct:   135 PGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAFGAELVLTEPAKG 194

Query:   127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                           TP+ Y+L+QF+NPANPKIHYETTGPEIW+D+ GK+D  ++      
Sbjct:   195 MTGAIQKAEEILKKTPNSYMLQQFDNPANPKIHYETTGPEIWEDTRGKIDILVAGIGTGG 254

Query:   187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                   RF+KE  P++KV GVEP+ESA+L+GG+ G
Sbjct:   255 TITGVGRFIKERKPELKVIGVEPTESAILSGGKPG 289

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;ISS;IDA

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009536 "plastid" evidence=TAS

GO:0019344 "cysteine biosynthetic process" evidence=RCA;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2080417 OASC "O-acetylserine (thiol) lyase isoform C" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 127/219 (57%), Positives = 158/219 (72%)

Query:     3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
             D   I  +V++LIG TPMVYLN++  GCVA IAAKLE MEPC SVKDRI YSM+ DAE K
Sbjct:   109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQK 168

Query:    63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
             G I+PGK+ L+E TSGNTG+GLAFIAA+RGY LI+ MP++ SMERR++L+A GAE++L D
Sbjct:   169 GFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTD 228

Query:   123 SALRFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXX 182
              A                TPD Y+L+QF+NPANPKIHYETTGPEIW D+ GKVD F++  
Sbjct:   229 PAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGI 288

Query:   183 XXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                       RF+KE NP  +V GVEP+ES +L+GG+ G
Sbjct:   289 GTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0048868 "pollen tube development" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2096454 CS26 "cysteine synthase 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 125/252 (49%), Positives = 161/252 (63%)

Query:     7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
             I  DVT+LIG+TPMVYLN V DGC+A IAAKLE+MEPC SVKDRI  SMI +AE+ G IT
Sbjct:    99 IAEDVTQLIGSTPMVYLNRVTDGCLADIAAKLESMEPCRSVKDRIGLSMINEAENSGAIT 158

Query:    67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
             P KT L+E T+GNTG+G+AF+AAA+GY LI+ MP++ ++ERR++LRALGAEI+L +    
Sbjct:   159 PRKTVLVEPTTGNTGLGIAFVAAAKGYKLIVTMPASINIERRMLLRALGAEIVLTNPEKG 218

Query:   127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                           T + Y+ +QF+N AN KIH+ETTGPEIW+D+ G VD F++      
Sbjct:   219 LKGAVDKAKEIVLKTKNAYMFQQFDNTANTKIHFETTGPEIWEDTMGNVDIFVAGIGTGG 278

Query:   187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGLF--IFISYLFRSFVLVDDGAVVHL 244
                    FLK  N DIKV GVEPSE +V++G   G    I    L      V +G  + +
Sbjct:   279 TVTGTGGFLKMMNKDIKVVGVEPSERSVISGDNPGYLPGILDVKLLDEVFKVSNGEAIEM 338

Query:   245 HNYLLLHIFTLV 256
                L L    LV
Sbjct:   339 ARRLALEEGLLV 350

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0019344 "cysteine biosynthetic process" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=IMP

GO:0015979 "photosynthesis" evidence=IMP

GO:0090322 "regulation of superoxide metabolic process" evidence=IMP

GO:0009643 "photosynthetic acclimation" evidence=IMP

GO:0031977 "thylakoid lumen" evidence=IDA

UNIPROTKB|Q43153 CYSC "Bifunctional L-3-cyanoalanine synthase/cysteine synthase, mitochondrial" [Spinacia oleracea (taxid:3562)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 112/215 (52%), Positives = 151/215 (70%)

Query:     7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
             IK +V++LIG TP+VYL+ + +G  A IA K E M+P +SVKDR A +MI+DAE KGLI+
Sbjct:    49 IKTNVSQLIGRTPLVYLSKISEGSGAYIAVKQEMMQPTASVKDRPALAMIEDAEKKGLIS 108

Query:    67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
             PGKT LIE TSGN G+ +AF+AA +GY +++ MPS  SMERR+V+RA GA++IL D    
Sbjct:   109 PGKTVLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSMERRVVMRAFGADLILTDPDKG 168

Query:   127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                           TPDG++L+QF NPAN ++H+ETTGPEIW+D+ GKVD F+       
Sbjct:   169 MGGTVKKANQLLDSTPDGFMLQQFNNPANTQVHFETTGPEIWEDTQGKVDIFVMGIGSGG 228

Query:   187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                   R+LK  NP++K+YGVEP+ES +LNGG+ G
Sbjct:   229 TVSGVGRYLKSQNPNVKIYGVEPAESNILNGGKPG 263

GO:0004124 "cysteine synthase activity" evidence=IDA

GO:0006534 "cysteine metabolic process" evidence=IDA

GO:0019499 "cyanide metabolic process" evidence=IDA

GO:0050017 "L-3-cyanoalanine synthase activity" evidence=IDA

UNIPROTKB|Q76MX2 PCAS-1 "Bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial" [Solanum tuberosum (taxid:4113)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 111/215 (51%), Positives = 146/215 (67%)

Query:     7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
             IK  V++LIG TP+VYLN V +GC A IA K E M+P SS+KDR A++MI DAE KGLIT
Sbjct:    32 IKTQVSQLIGKTPLVYLNKVSEGCGAYIAVKQEMMQPTSSIKDRPAFAMINDAEKKGLIT 91

Query:    67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
             PGKTTLIE TSGN G+ +AF+AA +GY +I+ MPS  S+ERR+ +RA GA+++  D    
Sbjct:    92 PGKTTLIEPTSGNMGISMAFMAAMKGYKMILTMPSYTSLERRVTMRAFGADLVTTDPTKG 151

Query:   127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                           TP+ Y+L+QF NPAN + H+ETTGPEIW+D+ G VD F+       
Sbjct:   152 MGGTIKKAYDLLESTPNAYMLQQFSNPANTQAHFETTGPEIWEDTQGNVDIFVMGIGSGG 211

Query:   187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                   ++LK  NP++K+YG+EP+ES VLNGG  G
Sbjct:   212 TVSGVGQYLKSKNPNVKIYGIEPTESNVLNGGNPG 246

GO:0004124 "cysteine synthase activity" evidence=IDA

GO:0006534 "cysteine metabolic process" evidence=IDA

GO:0019499 "cyanide metabolic process" evidence=IDA

GO:0050017 "L-3-cyanoalanine synthase activity" evidence=IDA

UNIPROTKB|Q1KLZ2 CAS1 "L-3-cyanoalanine synthase 1, mitochondrial" [Malus x domestica (taxid:3750)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 110/215 (51%), Positives = 147/215 (68%)

Query:     7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
             IK  V++LIG TP+VYLN V +GC A IA K E  +P +S+KDR A SMI DAE+KGLIT
Sbjct:    55 IKTQVSQLIGRTPIVYLNKVTEGCGAYIAVKQEMFQPTASIKDRPALSMINDAEEKGLIT 114

Query:    67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
             PG+T LIE TSGN G+ +AF+AA RGY +++ MPS  S+ERR+ +R  GA++IL D    
Sbjct:   115 PGETILIEPTSGNMGISMAFMAAMRGYKMVLTMPSYTSLERRVCMRCFGADLILTDPTKG 174

Query:   127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                           TP+ Y+L+QF NPAN K+H+ETTGPEIW+D+ G+VD F+       
Sbjct:   175 MGGTVKKAYDLLESTPNAYMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVMGIGSGG 234

Query:   187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                   ++LK  NP++++YGVEP+ES VLNGG+ G
Sbjct:   235 TVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPG 269

GO:0009836 "fruit ripening, climacteric" evidence=IDA

GO:0050017 "L-3-cyanoalanine synthase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0A535	CYSK_MYCBO	2, ., 5, ., 1, ., 4, 7	0.5046	0.8365	0.6935	yes	no
P0A534	CYSK_MYCTU	2, ., 5, ., 1, ., 4, 7	0.5046	0.8365	0.6935	yes	no
P37887	CYSK_BACSU	2, ., 5, ., 1, ., 4, 7	0.5345	0.8249	0.6883	yes	no
O81154	CYSK_SOLTU	2, ., 5, ., 1, ., 4, 7	0.7069	0.8365	0.6615	N/A	no
P0A1E3	CYSK_SALTY	2, ., 5, ., 1, ., 4, 7	0.5047	0.7976	0.6346	yes	no
Q8CMT6	CYSK_STAES	2, ., 5, ., 1, ., 4, 7	0.5023	0.8093	0.6709	yes	no
O32978	CYSK_MYCLE	2, ., 5, ., 1, ., 4, 7	0.5185	0.8365	0.6935	yes	no
Q7DDL5	CYSK_NEIMB	2, ., 5, ., 1, ., 4, 7	0.5185	0.8326	0.6903	yes	no
Q43317	CYSK_CITLA	2, ., 5, ., 1, ., 5, 2	0.7201	0.8482	0.6707	N/A	no
Q5HRP1	CYSK_STAEQ	2, ., 5, ., 1, ., 4, 7	0.5023	0.8093	0.6709	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.3.1	LOW CONFIDENCE prediction!
4th Layer	2.5.1.47	0.946
3rd Layer	2.5.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031107001	RecName- Full=Cysteine synthase; EC=2.5.1.47; (323 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00000669001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (403 aa)	•					•	•		0.957
	GSVIVG00024596001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (668 aa)				•		•	•		0.950
	GSVIVG00008446001	SubName- Full=Chromosome undetermined scaffold_1460, whole genome shotgun sequence; (261 aa)	•					•	•		0.945
	GSVIVG00016589001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (290 aa)	•					•	•		0.943
	GSVIVG00011752001	SubName- Full=Chromosome undetermined scaffold_334, whole genome shotgun sequence; (307 aa)	•					•	•		0.935
	GSVIVG00033340001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (304 aa)	•					•	•		0.928
	GSVIVG00033361001	RecName- Full=Cysteine synthase; EC=2.5.1.47; (373 aa)			•			•	•	•	0.916
	GSVIVG00033683001	RecName- Full=Cysteine synthase; EC=2.5.1.47; (390 aa)			•			•	•	•	0.905
	GSVIVG00026889001	RecName- Full=Cysteine synthase; EC=2.5.1.47; (371 aa)			•			•	•	•	0.905
	GSVIVG00031101001	RecName- Full=Cysteine synthase; EC=2.5.1.47; (251 aa)			•			•	•	•	0.905

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
PLN02565	322	PLN02565, PLN02565, cysteine synthase	1e-128
PLN00011	323	PLN00011, PLN00011, cysteine synthase	1e-126
TIGR01136	299	TIGR01136, cysKM, cysteine synthase	1e-110
TIGR01139	298	TIGR01139, cysK, cysteine synthase A	1e-107
PLN03013	429	PLN03013, PLN03013, cysteine synthase	1e-105
PLN02556	368	PLN02556, PLN02556, cysteine synthase/L-3-cyanoala	1e-104
cd01561	291	cd01561, CBS_like, CBS_like: This subgroup include	1e-103
COG0031	300	COG0031, CysK, Cysteine synthase [Amino acid trans	1e-102
PRK10717	330	PRK10717, PRK10717, cysteine synthase A; Provision	5e-83
PRK11761	296	PRK11761, cysM, cysteine synthase B; Provisional	6e-78
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	3e-72
TIGR01138	290	TIGR01138, cysM, cysteine synthase B	1e-66
cd00640	244	cd00640, Trp-synth-beta_II, Tryptophan synthase be	3e-63
TIGR03945	304	TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio	6e-54
pfam00291	295	pfam00291, PALP, Pyridoxal-phosphate dependent enz	2e-53
PLN02356	423	PLN02356, PLN02356, phosphateglycerate kinase	1e-39
cd01562	304	cd01562, Thr-dehyd, Threonine dehydratase: The fir	1e-20
COG1171	347	COG1171, IlvA, Threonine dehydratase [Amino acid t	6e-20
TIGR01124	499	TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b	2e-13
TIGR01127	380	TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m	7e-13
PRK09224	504	PRK09224, PRK09224, threonine dehydratase; Reviewe	1e-12
PRK12483	521	PRK12483, PRK12483, threonine dehydratase; Reviewe	1e-12
PRK08638	333	PRK08638, PRK08638, threonine dehydratase; Validat	1e-11
PLN02550	591	PLN02550, PLN02550, threonine dehydratase	4e-11
TIGR02079	409	TIGR02079, THD1, threonine dehydratase	5e-11
cd01563	324	cd01563, Thr-synth_1, Threonine synthase is a pyri	1e-10
PRK08198	404	PRK08198, PRK08198, threonine dehydratase; Provisi	1e-09
PRK06815	317	PRK06815, PRK06815, hypothetical protein; Provisio	2e-09
PRK06382	406	PRK06382, PRK06382, threonine dehydratase; Provisi	8e-09
PRK06608	338	PRK06608, PRK06608, threonine dehydratase; Provisi	2e-08
PRK08526	403	PRK08526, PRK08526, threonine dehydratase; Provisi	1e-07
PRK06381	319	PRK06381, PRK06381, threonine synthase; Validated	3e-07
COG0498	411	COG0498, ThrC, Threonine synthase [Amino acid tran	3e-06
PRK06450	338	PRK06450, PRK06450, threonine synthase; Validated	4e-06
TIGR02991	317	TIGR02991, ectoine_eutB, ectoine utilization prote	4e-06
cd06448	316	cd06448, L-Ser-dehyd, Serine dehydratase is a pyri	6e-06
PRK07048	321	PRK07048, PRK07048, serine/threonine dehydratase;	1e-05
PRK06721	352	PRK06721, PRK06721, threonine synthase; Reviewed	1e-05
PRK07334	403	PRK07334, PRK07334, threonine dehydratase; Provisi	2e-05
PRK05638	442	PRK05638, PRK05638, threonine synthase; Validated	2e-05
PRK06110	322	PRK06110, PRK06110, hypothetical protein; Provisio	4e-05
TIGR03528	396	TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammoni	5e-05
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	8e-05
PLN02970	328	PLN02970, PLN02970, serine racemase	1e-04
TIGR01747	376	TIGR01747, diampropi_NH3ly, diaminopropionate ammo	2e-04
PRK06352	351	PRK06352, PRK06352, threonine synthase; Validated	2e-04
PRK07476	322	PRK07476, eutB, threonine dehydratase; Provisional	6e-04
PRK08639	420	PRK08639, PRK08639, threonine dehydratase; Validat	8e-04
PRK08206	399	PRK08206, PRK08206, diaminopropionate ammonia-lyas	0.001
PRK08246	310	PRK08246, PRK08246, threonine dehydratase; Provisi	0.001
PRK08329	347	PRK08329, PRK08329, threonine synthase; Validated	0.003
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	0.004

>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase

 Score =  366 bits (942), Expect = e-128
 Identities = 159/216 (73%), Positives = 189/216 (87%)

Query: 6   AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
           +I +DVTELIG TP+VYLNNVVDGCVARIAAKLE MEPCSSVKDRI YSMI DAE+KGLI
Sbjct: 4   SIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLI 63

Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
            PG++ LIE TSGNTG+GLAF+AAA+GY LII MP++ S+ERRI+L A GAE++L D A 
Sbjct: 64  KPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAK 123

Query: 126 RFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTG 185
             +  ++K EEIL KTP+ Y+L+QFENPANPKIHYETTGPEIW+ +GGKVDAF+SGIGTG
Sbjct: 124 GMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTG 183

Query: 186 GTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           GT+TGAG++LKE NPDIK+YGVEP ESAVL+GG+ G
Sbjct: 184 GTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPG 219

Length = 322

>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase

 Score =  360 bits (925), Expect = e-126
 Identities = 167/221 (75%), Positives = 189/221 (85%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
           MED   IK DVTELIGNTPMVYLNN+VDGCVARIAAKLE MEPCSSVKDRIAYSMIKDAE
Sbjct: 1   MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAE 60

Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
           DKGLITPGK+TLIE T+GNTG+GLA I AARGY +I+VMPST S+ERRI+LRALGAE+ L
Sbjct: 61  DKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHL 120

Query: 121 ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
            D ++  + +LEK EEIL KTP GY+ +QFENPANP+IHY TTGPEIW+DS GKVD  ++
Sbjct: 121 TDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVA 180

Query: 181 GIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           G+GTGGT TG G+FLKE N DIKV  VEP ESAVL+GGQ G
Sbjct: 181 GVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPG 221

Length = 323

>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase

 Score =  319 bits (820), Expect = e-110
 Identities = 122/211 (57%), Positives = 160/211 (75%), Gaps = 1/211 (0%)

Query: 11  VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
           + ELIGNTP+V LN +  GC AR+ AKLE   P  SVKDRIA SMI+DAE +GL+ PG  
Sbjct: 1   IEELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-D 59

Query: 71  TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEI 130
           T+IE TSGNTG+ LA +AAA+GY LI+ MP T S+ERR +LRA GAE+IL  +    +  
Sbjct: 60  TIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGA 119

Query: 131 LEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTG 190
           ++K EE+  +T    +L QFENPANP+ HY+TTGPEIW+D+ G++D F++G+GTGGT+TG
Sbjct: 120 IDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITG 179

Query: 191 AGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
            GR+LKE NP+IK+  VEP+ES VL+GG+ G
Sbjct: 180 VGRYLKEQNPNIKIVAVEPAESPVLSGGEPG 210

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff [Amino acid biosynthesis, Serine family]. Length = 299

>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A

 Score =  311 bits (800), Expect = e-107
 Identities = 121/212 (57%), Positives = 159/212 (75%), Gaps = 3/212 (1%)

Query: 11  VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
           ++ELIGNTP+V LN + +GC A +  KLE   P  SVKDRIA +MI DAE +GL+ PG  
Sbjct: 1   ISELIGNTPLVRLNRI-EGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-K 58

Query: 71  TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEI 130
           T++E TSGNTG+ LA +AAARGY LI+ MP T S+ERR +L+A GAE++L   A   +  
Sbjct: 59  TIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGA 118

Query: 131 LEKGEEILKKTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT 189
           + K EEI   TP+ Y +L+QFENPANP+IH +TTGPEIW+D+ GK+DAF++G+GTGGT+T
Sbjct: 119 IAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTIT 178

Query: 190 GAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           G G  LKE  P+IK+  VEP+ES VL+GG+ G
Sbjct: 179 GVGEVLKEQKPNIKIVAVEPAESPVLSGGKPG 210

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate [Amino acid biosynthesis, Serine family]. Length = 298

>gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase

 Score =  311 bits (798), Expect = e-105
 Identities = 143/219 (65%), Positives = 177/219 (80%)

Query: 3   DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
           D   I  +V++LIG TPMVYLN++  GCVA IAAKLE MEPC SVKDRI YSM+ DAE K
Sbjct: 109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQK 168

Query: 63  GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
           G I+PGK+ L+E TSGNTG+GLAFIAA+RGY LI+ MP++ SMERR++L+A GAE++L D
Sbjct: 169 GFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTD 228

Query: 123 SALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGI 182
            A      ++K EEILK TPD Y+L+QF+NPANPKIHYETTGPEIW D+ GKVD F++GI
Sbjct: 229 PAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGI 288

Query: 183 GTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           GTGGT+TG GRF+KE NP  +V GVEP+ES +L+GG+ G
Sbjct: 289 GTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327

Length = 429

>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase

 Score =  307 bits (788), Expect = e-104
 Identities = 126/215 (58%), Positives = 167/215 (77%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           IK D ++LIG TP+VYLN V +GC A IAAK E  +P SS+KDR A +MI+DAE K LIT
Sbjct: 49  IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLIT 108

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PGKTTLIE TSGN G+ LAF+AA +GY +I+ MPS  S+ERR+ +RA GAE++L D    
Sbjct: 109 PGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKG 168

Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
               ++K  E+L+ TPD ++L+QF NPAN ++H+ETTGPEIW+D+ G+VD F+ GIG+GG
Sbjct: 169 MGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGG 228

Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           TV+G G++LK  NP++K+YGVEP+ES VLNGG+ G
Sbjct: 229 TVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPG 263

Length = 368

>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

 Score =  300 bits (772), Expect = e-103
 Identities = 117/208 (56%), Positives = 149/208 (71%), Gaps = 3/208 (1%)

Query: 16  GNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEV 75
           GNTP+V LN +  G  A I AKLE   P  SVKDRIA  MI+DAE +GL+ PG TT+IE 
Sbjct: 1   GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEP 59

Query: 76  TSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL--ADSALRFEEILEK 133
           TSGNTG+GLA +AAA+GY  IIVMP T S E+R +LRALGAE+IL     A   +  + K
Sbjct: 60  TSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAK 119

Query: 134 GEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGR 193
             E+  +TP+ + L QFENPANP+ HYETT PEIW+   GKVDAF++G+GTGGT+TG  R
Sbjct: 120 ARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVAR 179

Query: 194 FLKENNPDIKVYGVEPSESAVLNGGQRG 221
           +LKE NP++++ GV+P  S + +GG  G
Sbjct: 180 YLKEKNPNVRIVGVDPVGSVLFSGGPPG 207

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291

>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]

 Score =  299 bits (769), Expect = e-102
 Identities = 122/240 (50%), Positives = 161/240 (67%), Gaps = 10/240 (4%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I   + +LIGNTP+V LN +  G    I AKLE+  P  SVKDRIA  MI+DAE +GL+ 
Sbjct: 1   IYESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLK 60

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-L 125
           PG  T++E TSGNTG+ LA +AAA+GY LIIVMP T S ERR +LRALGAE+IL   A  
Sbjct: 61  PG-GTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPG 119

Query: 126 RFEEILEKGEEILKKTPD-GYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGT 184
             +  +E+ +E+  + P     L QFENPANP+ HYETTGPEIWQ + GKVDAF++G+GT
Sbjct: 120 NMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGT 179

Query: 185 GGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFI------FISYLFRSFVLVDD 238
           GGT+TG  R+LKE NP++++  V+P  S +L+GG+    I      F+        L+D+
Sbjct: 180 GGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDL-DLIDE 238

Length = 300

>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional

 Score =  251 bits (643), Expect = 5e-83
 Identities = 104/225 (46%), Positives = 144/225 (64%), Gaps = 24/225 (10%)

Query: 7   IKRDVTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGL 64
           I  DV++ IGNTP++ LN   +  GC   I  K E + P  SVKDR A ++I DAE +GL
Sbjct: 3   IFEDVSDTIGNTPLIRLNRASEATGC--EILGKAEFLNPGGSVKDRAALNIIWDAEKRGL 60

Query: 65  ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS- 123
           + PG T ++E T+GNTG+GLA +AAARGY  +IVMP T S E++ +LRALGAE++L  + 
Sbjct: 61  LKPGGT-IVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAA 119

Query: 124 -----------ALRFEEILEKGEEILKKTPDGYL-LRQFENPANPKIHYETTGPEIWQDS 171
                      A R        EE++   P+G +   QF+NPAN + HYETTGPEIW+ +
Sbjct: 120 PYANPNNYVKGAGR------LAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQT 173

Query: 172 GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216
            GKVD F+  +GTGGT+ G  R+LKE NP +K+   +P+ SA+ +
Sbjct: 174 DGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYS 218

Length = 330

>gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional

 Score =  237 bits (606), Expect = 6e-78
 Identities = 94/201 (46%), Positives = 125/201 (62%), Gaps = 2/201 (0%)

Query: 13  ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
           + IGNTP+V L  +       I AKLE   P  SVKDR A SMI  AE +G I PG  TL
Sbjct: 8   DTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTL 66

Query: 73  IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILE 132
           IE TSGNTG+ LA IAA +GY + ++MP   S ERR  +RA GAE+IL       E   +
Sbjct: 67  IEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARD 126

Query: 133 KGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAG 192
              ++  +  +G +L QF NP NP  HYETTGPEIW+ + G++  F+S +GT GT+ G  
Sbjct: 127 LALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVS 185

Query: 193 RFLKENNPDIKVYGVEPSESA 213
           R+LKE NP +++ G++P E +
Sbjct: 186 RYLKEQNPAVQIVGLQPEEGS 206

Length = 296

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score =  227 bits (581), Expect = 3e-72
 Identities = 100/216 (46%), Positives = 141/216 (65%), Gaps = 5/216 (2%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I+ ++ +LIGNTP+V LN V  G    + AK E   P  SVKDRIA  MI+DAE  G + 
Sbjct: 1   IRDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLK 60

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PG  T+IE TSGNTG+GLA +AA +GY  IIV+P   S E+  VL+ALGAEI+   +A  
Sbjct: 61  PG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAA 119

Query: 127 F---EEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIG 183
           F   E  +   + ++++ P  ++L Q+ NP+NP  HY+ TGPEI +   GK+D F++G G
Sbjct: 120 FDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAG 179

Query: 184 TGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQ 219
           TGGT+TG  R+LKE+NP  ++ G +P E ++L   +
Sbjct: 180 TGGTITGIARYLKESNPKCRIVGADP-EGSILAQPE 214

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B

 Score =  208 bits (530), Expect = 1e-66
 Identities = 94/210 (44%), Positives = 129/210 (61%), Gaps = 2/210 (0%)

Query: 11  VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
           + + +GNTP+V L  +     + +  KLE   P  SVKDR A SMI +AE +G I PG  
Sbjct: 2   IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDV 61

Query: 71  TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEI 130
            LIE TSGNTG+ LA IAA +GY + ++MP   S ER+  +RA GAE+IL       E  
Sbjct: 62  -LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGA 120

Query: 131 LEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTG 190
            +   E+  +   G LL QF NP NP  HY +TGPEIWQ +GG++  F+S +GT GT+ G
Sbjct: 121 RDLALELANRGE-GKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMG 179

Query: 191 AGRFLKENNPDIKVYGVEPSESAVLNGGQR 220
             RFLKE NP +++ G++P E + + G +R
Sbjct: 180 VSRFLKEQNPPVQIVGLQPEEGSSIPGIRR 209

CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family]. Length = 290

>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

 Score =  198 bits (505), Expect = 3e-63
 Identities = 79/193 (40%), Positives = 108/193 (55%), Gaps = 6/193 (3%)

Query: 18  TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS 77
           TP+V L  +     A I  KLE + P  S KDR A ++I  AE++G +   K  +IE T 
Sbjct: 1   TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL--PKGVIIESTG 58

Query: 78  GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEI 137
           GNTG+ LA  AA  G    IVMP   S E+   +RALGAE++L      F++ +   +E+
Sbjct: 59  GNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKEL 116

Query: 138 LKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG-KVDAFISGIGTGGTVTGAGRFLK 196
            ++ P  Y + QF+NPAN      T G EI +  GG K DA +  +G GG + G  R LK
Sbjct: 117 AEEDPGAYYVNQFDNPANIAGQG-TIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALK 175

Query: 197 ENNPDIKVYGVEP 209
           E  P++KV GVEP
Sbjct: 176 ELLPNVKVIGVEP 188

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244

>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA

 Score =  175 bits (447), Expect = 6e-54
 Identities = 81/215 (37%), Positives = 112/215 (52%), Gaps = 7/215 (3%)

Query: 11  VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
           +  LIGNTP+V L  +      R+ AKLE   P  S+KDR A  +++ A  +G ITPG T
Sbjct: 1   ILSLIGNTPLVKLERLFPDAPFRLFAKLEGFNPGGSIKDRPALYILEAAIKRGRITPG-T 59

Query: 71  TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEI 130
           T+IE +SGN G+ LA I A +G   I V+    S +   +LRA GAE+            
Sbjct: 60  TIIESSSGNLGIALAMICAYKGLRFICVVDPNISPQNLKLLRAYGAEVEKVTEPDETGGY 119

Query: 131 L----EKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
           L     +  E+L   PD Y   Q+ NP NP+ HY  TG EI +     +D    G+ T G
Sbjct: 120 LGTRIARVRELLASIPDAYWPNQYANPDNPRAHYHGTGREIARAF-PPLDYLFVGVSTTG 178

Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           T+ G  R L+E  P+ KV  V+ +  +V+ GG  G
Sbjct: 179 TLMGCSRRLRERGPNTKVIAVD-AVGSVIFGGPPG 212

Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme [Cellular processes, Biosynthesis of natural products]. Length = 304

>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme

 Score =  174 bits (442), Expect = 2e-53
 Identities = 77/215 (35%), Positives = 111/215 (51%), Gaps = 13/215 (6%)

Query: 11  VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
           ++  IG TP+V L +      AR+  KLE++ P  S KDR A  ++  A ++G       
Sbjct: 1   ISLGIGPTPLVRLPS--PLLGARVYLKLESLNPTGSFKDRGAAYLLLRALERG------A 52

Query: 71  TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE- 129
           T++E +SGNTG  LA  AA  G  + IV+P   S  + +++RALGAE+IL  S   +++ 
Sbjct: 53  TVVEASSGNTGRALAAAAARLGLKVTIVVPEGASPGKLLLMRALGAEVILVVSEGDYDDA 112

Query: 130 --ILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSG-GKVDAFISGIGTGG 186
             + E+  E+L        L Q+ NP N    Y+T G EI +  G G  DA +  +G GG
Sbjct: 113 LELAEEAAELLAAYDGPIPLGQYNNP-NVIAGYKTIGLEILEQLGQGDPDAVVVPVGGGG 171

Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
              G  R LKE  P I+V GVEP  +  L      
Sbjct: 172 LAAGIARGLKELGPGIRVIGVEPEGAPALARSLEA 206

Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295

>gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase

 Score =  141 bits (357), Expect = 1e-39
 Identities = 84/259 (32%), Positives = 129/259 (49%), Gaps = 42/259 (16%)

Query: 5   NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGL 64
              +  + + IGNTP++ +N++ +     I  K E + P  SVKDR+A  +I++A + G 
Sbjct: 41  KKPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQ 100

Query: 65  ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI------ 118
           + PG   + E ++G+T + LA +A A G    +V+P   ++E+  +L ALGA +      
Sbjct: 101 LFPGGV-VTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPV 159

Query: 119 -------------ILADSALRFEEILEKGEEI----LKKT------------------PD 143
                          A  A        KG E     L+KT                    
Sbjct: 160 SITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTG 219

Query: 144 GYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIK 203
           G+   QFEN AN + HYE TGPEIW+ + G +DAF++  GTGGT+ G  RFL+E NP+IK
Sbjct: 220 GFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIK 279

Query: 204 VYGVEPSESAVLNGGQRGL 222
            + ++P  S + N   RG+
Sbjct: 280 CFLIDPPGSGLFNKVTRGV 298

Length = 423

>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

 Score = 88.3 bits (220), Expect = 1e-20
 Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 35/209 (16%)

Query: 18  TPMVY---LNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMI----KDAEDKGLITPGKT 70
           TP++    L+ ++    A +  K E ++   S K R AY+ +    ++   KG++     
Sbjct: 18  TPLLTSPTLSELLG---AEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVA---- 70

Query: 71  TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEI 130
                ++GN   G+A+ A   G    IVMP T    +    RA GAE++L      F+E 
Sbjct: 71  ----ASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEA 124

Query: 131 LEKGEEILKKTPDGYLLRQFENPANPKIHYE------TTGPEIWQDSGGKVDAFISGIGT 184
             K  E+ ++   G     F +P +     +      T G EI +     +DA    +G 
Sbjct: 125 EAKARELAEEE--GLT---FIHPFD---DPDVIAGQGTIGLEILEQV-PDLDAVFVPVGG 175

Query: 185 GGTVTGAGRFLKENNPDIKVYGVEPSESA 213
           GG + G    +K  +P+ KV GVEP  + 
Sbjct: 176 GGLIAGIATAVKALSPNTKVIGVEPEGAP 204

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. Length = 304

>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism]

 Score = 86.9 bits (216), Expect = 6e-20
 Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 15/203 (7%)

Query: 18  TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS 77
           TP+    ++ +   A I  K E ++P  S K R AY+ +    ++     G   +I  ++
Sbjct: 26  TPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAG---VIAASA 82

Query: 78  GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEI 137
           GN   G+A+ A   G    IVMP T    +    R  GAE+IL      F++     EE+
Sbjct: 83  GNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEEL 140

Query: 138 LKKTPDGYLLRQFENPANPKIH----YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGR 193
            ++      +  F++P            T   EI +      DA    +G GG ++G   
Sbjct: 141 AEEE-GLTFVPPFDDP-----DVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIAT 194

Query: 194 FLKENNPDIKVYGVEPSESAVLN 216
            LK  +P+IKV GVEP  +  + 
Sbjct: 195 ALKALSPEIKVIGVEPEGAPSMY 217

Length = 347

>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 22/190 (11%)

Query: 33  RIAAKLETMEPCSSVKDRIAYSMI----KDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88
           RI  K E ++P  S K R AY+ +     + + +G+I          ++GN   G+AF A
Sbjct: 33  RILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIA--------ASAGNHAQGVAFSA 84

Query: 89  AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLR 148
           A  G   +IVMP T    +   +R  G E++L  +   F++   K  E+ ++    + + 
Sbjct: 85  ARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGAN--FDDAKAKAIELSQEKGLTF-IH 141

Query: 149 QFENP---ANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVY 205
            F++P   A       T   EI +     +DA    +G GG   G    +K+  P+IKV 
Sbjct: 142 PFDDPLVIAGQG----TLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVI 197

Query: 206 GVEPSESAVL 215
           GVEP++S  +
Sbjct: 198 GVEPTDSDCM 207

This model describes a form of threonine ammonia-lyase, a pyridoxal-phosphate dependent enzyme, with two copies of the threonine dehydratase C-terminal domain (pfam00585). Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine. Alternate name: threonine deaminase, threonine dehydratase. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain [Amino acid biosynthesis, Pyruvate family]. Length = 499

>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form

 Score = 67.1 bits (164), Expect = 7e-13
 Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 21/210 (10%)

Query: 18  TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS 77
           TP++Y   + D   + +  KLE ++   S K R A + I +  +       +  ++  ++
Sbjct: 1   TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQ----RQRGVVAASA 56

Query: 78  GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEI 137
           GN   G+A+ A   G   +IVMP +    +    ++ GAE+IL      ++E       +
Sbjct: 57  GNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVIL--HGDDYDEAYAFATSL 114

Query: 138 LKKTPDGY-LLRQFENP---ANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGR 193
            ++   G   +  F++    A       T G EI +D    VD  I  +G GG ++G   
Sbjct: 115 AEEE--GRVFVHPFDDEFVMAGQG----TIGLEIMED-IPDVDTVIVPVGGGGLISGVAS 167

Query: 194 FLKENNPDIKVYGVE----PSESAVLNGGQ 219
             K+ NP++KV GVE    PS    L  G+
Sbjct: 168 AAKQINPNVKVIGVEAEGAPSMYESLREGK 197

A form of threonine dehydratase with two copies of the C-terminal domain pfam00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 380

>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 50/217 (23%)

Query: 33  RIAAKLETMEPCSSVKDRIAYSMI----KDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88
           ++  K E ++P  S K R AY+ +    ++   +G+IT         ++GN   G+A  A
Sbjct: 36  QVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVIT--------ASAGNHAQGVALSA 87

Query: 89  AARGYNLIIVMPSTC-SMERRIVLRALGAEIILA-DSALRFEEILEKGEEILKKTPDGYL 146
           A  G   +IVMP T   ++   V RA G E++L  DS   F+E      E+ ++  +G  
Sbjct: 88  ARLGIKAVIVMPVTTPDIKVDAV-RAFGGEVVLHGDS---FDEAYAHAIELAEE--EGLT 141

Query: 147 LRQFENPANPKIH-YE---------TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLK 196
                      IH ++         T   EI Q     +DA    +G GG + G   ++K
Sbjct: 142 F----------IHPFDDPDVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIK 191

Query: 197 ENNPDIKVYGVEPSESAV----LNGGQR------GLF 223
           +  P+IKV GVEP +SA     L  G+R      GLF
Sbjct: 192 QLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLF 228

Length = 504

>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 26/205 (12%)

Query: 33  RIAAKLETMEPCSSVKDRIAYSMIK----DAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88
           ++  K E ++P  S K R AY+ +     +   +G+IT         ++GN   G+A  A
Sbjct: 53  QVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVIT--------ASAGNHAQGVALAA 104

Query: 89  AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLR 148
           A  G   +IVMP T    +   +RA G E++L   +  F + L    + L +      + 
Sbjct: 105 ARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGES--FPDALAHALK-LAEEEGLTFVP 161

Query: 149 QFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVE 208
            F++P +      T   EI +   G +DA    +G GG + G   ++K   P+IKV GVE
Sbjct: 162 PFDDP-DVIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVE 220

Query: 209 PSES----AVLNGGQR------GLF 223
           P +S    A L  G+R      GLF
Sbjct: 221 PDDSNCLQAALAAGERVVLGQVGLF 245

Length = 521

>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 65/215 (30%), Positives = 96/215 (44%), Gaps = 23/215 (10%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAY---SMIK 57
           ++D    K+ +   I  TP+   N + + C   I  KLE M+   S K R A+   S + 
Sbjct: 11  IDDIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLT 70

Query: 58  DAE-DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA 116
           DAE  KG++          ++GN   G+A   A  G +  +VMP      +       GA
Sbjct: 71  DAEKRKGVVA--------CSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGA 122

Query: 117 EIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPAN-PKI--HYETTGPEIWQDSGG 173
           E++L      F + + K EEI+++       R F  P + PK+     T G EI +D   
Sbjct: 123 EVVLHGD--NFNDTIAKVEEIVEEEG-----RTFIPPYDDPKVIAGQGTIGLEILEDLW- 174

Query: 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVE 208
            VD  I  IG GG + G    LK  NP I + GV+
Sbjct: 175 DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQ 209

Length = 333

>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase

 Score = 62.2 bits (151), Expect = 4e-11
 Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 33  RIAAKLETMEPCSSVKDRIAYSMI----KDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88
           ++  K E ++P  S K R AY+M+    K+  DKG+I          ++GN   G+A  A
Sbjct: 125 KVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICS--------SAGNHAQGVALSA 176

Query: 89  AARGYNLIIVMPSTCSMERRIVLRALGAEIILA----DSALRFEEILEKGEEILKKTPDG 144
              G + +I MP T    +   +  LGA ++L     D A  + +     E      P  
Sbjct: 177 QRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKQRALEEGRTFIPP-- 234

Query: 145 YLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKV 204
                F++P +      T G EI +   G + A    +G GG + G   ++K   P++K+
Sbjct: 235 -----FDHP-DVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKI 288

Query: 205 YGVEPSESAV----LNGGQR 220
            GVEPS++      L+ G+R
Sbjct: 289 IGVEPSDANAMALSLHHGER 308

Length = 591

>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 13/212 (6%)

Query: 2   EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAED 61
           +D  A ++ + E++ +TP+     + +   A I  K E ++P  S K R AY+ +K   D
Sbjct: 1   QDIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSD 60

Query: 62  KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE---I 118
             L       ++  ++GN   G A+     G +  + MP+T   ++   ++  G E   I
Sbjct: 61  AQL----AKGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEI 116

Query: 119 ILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE-TTGPEIWQDSGGKVDA 177
           IL      F++      E ++    G  +  F++P    I  + T   EI      K D 
Sbjct: 117 ILVGDT--FDQCAAAAREHVEDH-GGTFIPPFDDPR--IIEGQGTVAAEILDQLPEKPDY 171

Query: 178 FISGIGTGGTVTGAGRFLKENNPDIKVYGVEP 209
            +  +G GG ++G   +L   +P  K+ GVEP
Sbjct: 172 VVVPVGGGGLISGLTTYLAGTSPKTKIIGVEP 203

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been charcterized (TIGR01124 and TIGR01127). Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway [Amino acid biosynthesis, Pyruvate family]. Length = 409

>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 16/186 (8%)

Query: 16  GNTPMVYLNNVVD-GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE 74
           GNTP+V    + +      +  K E + P  S KDR     +  A  K L   G   +  
Sbjct: 21  GNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKA--KEL---GVKAVAC 75

Query: 75  VTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKG 134
            ++GNT   LA  AA  G   ++ +P+  ++ +     A GA ++  +    F++ L   
Sbjct: 76  ASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLV 133

Query: 135 EEILKKTPDGYLLRQFENPANP-KIH-YETTGPEIWQDSGGKV-DAFISGIGTGGTVTGA 191
            E+ ++    YL     N  NP ++   +T   EI +  G +V D  +  +G GG +T  
Sbjct: 134 RELAEENW-IYLS----NSLNPYRLEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAI 188

Query: 192 GRFLKE 197
            +  KE
Sbjct: 189 WKGFKE 194

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. Length = 324

>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional

 Score = 57.8 bits (141), Expect = 1e-09
 Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 44/212 (20%)

Query: 12  TELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAY----SMIKDAEDKGLITP 67
           +EL G    VYL             K E ++   S K R AY    S+ ++   +G++  
Sbjct: 32  SELTGAE--VYL-------------KCENLQRTGSFKIRGAYNKIASLSEEERARGVVA- 75

Query: 68  GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
                   ++GN   G+A+ A+  G    IVMP T  + +    R+ GAE++L      +
Sbjct: 76  -------ASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDV--Y 126

Query: 128 EEILEKGEEILKKTPDGYLLRQFENPANPKIHYE------TTGPEIWQDSGGKVDAFISG 181
           +E L K +E+ ++T  G     F +P +     +      T G EI +D    VD  +  
Sbjct: 127 DEALAKAQELAEET--GAT---FVHPFD---DPDVIAGQGTIGLEILED-LPDVDTVVVP 177

Query: 182 IGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213
           IG GG ++G    +K   P+++V GV+   + 
Sbjct: 178 IGGGGLISGVATAVKALRPEVRVIGVQAEGAP 209

Length = 404

>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 25/192 (13%)

Query: 32  ARIAAKLETMEPCSSVKDRIAYSMIK----DAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87
             +  K E ++   S K R A + ++        +G+IT         +SGN G G+A  
Sbjct: 35  CEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVIT--------ASSGNHGQGVALA 86

Query: 88  AAARGYNLIIVMPSTCSMERRIVLRALGAEIILA-DSALRFEEILEKGEEILKKTPDGYL 146
           A   G  + +  P   S  +   +RALGAE+ L    AL  E    +  E   K      
Sbjct: 87  AKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKV----- 141

Query: 147 LRQFENPAN-PKI--HYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIK 203
              + +P N P++     T G E+ +     +DA    +G GG ++G   +LK  +P  +
Sbjct: 142 ---YISPYNDPQVIAGQGTIGMELVEQQ-PDLDAVFVAVGGGGLISGIATYLKTLSPKTE 197

Query: 204 VYGVEPSESAVL 215
           + G  P+ S  L
Sbjct: 198 IIGCWPANSPSL 209

Length = 317

>gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional

 Score = 55.3 bits (133), Expect = 8e-09
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 23/212 (10%)

Query: 8   KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIA---YSMIKDAEDK-G 63
           K  +   +  TP+++     D     I  KLE  +   S K R A   +S + + E + G
Sbjct: 16  KSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNG 75

Query: 64  LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123
           +IT         ++GN   G+A+ A+  G +  IVMP     ++   + A GA +IL   
Sbjct: 76  VIT--------ASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR 127

Query: 124 ALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE---TTGPEIWQDSGGKVDAFIS 180
              ++E     ++I          R F    N +       T G EI +D    +D  I 
Sbjct: 128 D--YDEAHRYADKIAMDEN-----RTFIEAFNDRWVISGQGTIGLEIMEDLP-DLDQIIV 179

Query: 181 GIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212
            +G GG ++G     K  NP++K+ G+E   S
Sbjct: 180 PVGGGGLISGIALAAKHINPNVKIIGIESELS 211

Length = 406

>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 31/215 (14%)

Query: 4   NNAIKRDVTELIGNTPMVY---LNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
           +N IK+ +      TP+V+   LN ++      I  K+E+++   + K R   + + + +
Sbjct: 14  HNRIKQYLHL----TPIVHSESLNEMLG---HEIFFKVESLQKTGAFKVRGVLNHLLELK 66

Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
           ++G + P K  ++  ++GN G  +A+ +   G    I +P   S  ++      G E+IL
Sbjct: 67  EQGKL-PDK--IVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVIL 123

Query: 121 ADSALRFEEILEKGEEILKKTPDGYLLRQFENP---ANPKIHYETTGPEIWQDSGGKVDA 177
            ++    EE  ++ EE        Y +   ++    A       T   E  Q  G   DA
Sbjct: 124 TNTRQEAEEKAKEDEE-----QGFYYIHPSDSDSTIAGAG----TLCYEALQQLGFSPDA 174

Query: 178 FISGIGTGGTVTG---AGRFLKENNPDIKVYGVEP 209
             +  G GG ++G   A   +   +P   + G EP
Sbjct: 175 IFASCGGGGLISGTYLAKELI---SPTSLLIGSEP 206

Length = 338

>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 21/206 (10%)

Query: 8   KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITP 67
           K+ ++  +  TP  Y   +     A +  K E ++   + K R AY+ I +  ++     
Sbjct: 11  KQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQ---- 66

Query: 68  GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
            +  +I  ++GN   G+A  A   G   +IVMP    + +    +ALGAE+IL      +
Sbjct: 67  KQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NY 124

Query: 128 EEILEKGEEILKKTPDGYLLRQFENPANPKIHYE------TTGPEIWQDSGGKVDAFISG 181
           +E      E  K+  +   +  FE+        E      T   E+  +    +D  +  
Sbjct: 125 DEAYAFALEYAKEN-NLTFIHPFED-------EEVMAGQGTIALEMLDEIS-DLDMVVVP 175

Query: 182 IGTGGTVTGAGRFLKENNPDIKVYGV 207
           +G GG ++G     K+ NP+IK+ GV
Sbjct: 176 VGGGGLISGIASAAKQINPNIKIIGV 201

Length = 403

>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 21/165 (12%)

Query: 33  RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGL--ITPGKTTLIEVTSGNTGVGLAFIAAA 90
           +I  K E   P  + KDRIA + ++ A   G   IT G       T GN G  +A+ A  
Sbjct: 32  KIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGITVG-------TCGNYGASIAYFARL 84

Query: 91  RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQF 150
            G   +I +P + S  R   +   GAEII  D    +EE +E+  +  K+  +G      
Sbjct: 85  YGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGK--YEEAVERSRKFAKE--NGIY---D 137

Query: 151 ENP--ANPKIHYETTGP---EIWQDSGGKVDAFISGIGTGGTVTG 190
            NP   N  +  E       EI++  G   DA    +G G T+ G
Sbjct: 138 ANPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAG 182

Length = 319

>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism]

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 23/167 (13%)

Query: 33  RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARG 92
            +  K     P  S KDR    ++  A++ G       T++  +SGNTG   A  AA  G
Sbjct: 95  NLYVKELGHNPTGSFKDRGMTVLVSLAKELG-----AKTILCASSGNTGASAAAYAARAG 149

Query: 93  YNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFE 151
             + ++ P    S  +   +  LGA +I  D    F++  E  +E   +      +    
Sbjct: 150 LKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANREGLLSAV---- 203

Query: 152 NPANP------KIHYETTGPEIWQDSGGKV-DAFISGIGTGGTVTGA 191
           N  NP      K +      EI +  G K  D  +  +G GG +   
Sbjct: 204 NSINPYRLEGQKTYAF----EIAEQLGWKAPDHVVVPVGNGGNLLAI 246

Length = 411

>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 13/113 (11%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           IK  ++   G TP++   N+          KL+ + P  S KDR + ++I    +KG+  
Sbjct: 48  IKHFISLGEGRTPLIKKGNI--------WFKLDFLNPTGSYKDRGSVTLISYLAEKGI-- 97

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119
                + E +SGN G  +A   AA G  + I +P T S  +   + + GAE++
Sbjct: 98  ---KQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVV 147

Length = 338

>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 18/217 (8%)

Query: 5   NAIKRDVTELIGN---TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIK--DA 59
             I+R    + G    TP+V   ++ + C   +  KLE  +   S K R A + +     
Sbjct: 4   QDIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSD 63

Query: 60  EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI- 118
             +         ++  ++GN G  LA+ AA  G    I M       +   +R LGAE+ 
Sbjct: 64  TQRAA------GVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVR 117

Query: 119 ILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAF 178
           I+  S    +E +E+    L       +L  F++P        T G E+ +     +   
Sbjct: 118 IVGRSQDDAQEEVER----LVADRGLTMLPPFDHPDIVAGQ-GTLGLEVVEQM-PDLATV 171

Query: 179 ISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL 215
           +  +  GG  +G    +K   PD +V GV     A +
Sbjct: 172 LVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAM 208

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases. Length = 317

>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 32  ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91
             +  KLE ++P  S K R    + + +  +GL       ++  + GN G+  A+  AAR
Sbjct: 16  CNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL--NECVHVVCSSGGNAGLAAAY--AAR 71

Query: 92  GYNL--IIVMPSTCSMERRIV--LRALGAEIILADSALRFEEILEKGEEILKKTPDGYLL 147
              +   IV+P +   + R+V  LR  GA +++      +E      EE+ +  P    +
Sbjct: 72  KLGVPCTIVVPES--TKPRVVEKLRDEGATVVVHGKVW-WEADNYLREELAENDPGPVYV 128

Query: 148 RQFENPANPKIHYETTGPEIWQD--SGGKVDAFISGIGTGGTVTGAGRFLKENNP-DIKV 204
             F++P   + H  +   EI Q   S  KVDA +  +G GG + G  + L+ N   DI V
Sbjct: 129 HPFDDPLIWEGH-SSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPV 187

Query: 205 YGVEPSESAVLN 216
             VE   +  LN
Sbjct: 188 VAVETEGAHSLN 199

Length = 316

>gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 42/223 (18%)

Query: 32  ARIAAKLETMEPCSSVKDRIAYSMIK--DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89
           A++  K E  +   + K R AY+ +     E +      +  ++  +SGN    +A  A 
Sbjct: 39  AQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR------RAGVVTFSSGNHAQAIALSAR 92

Query: 90  ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEK-GEEILKKTPDGY-LL 147
             G    IVMP      +    R  G E++  D   R+ E  E+ G  + ++   G  L+
Sbjct: 93  LLGIPATIVMPQDAPAAKVAATRGYGGEVVTYD---RYTEDREEIGRRLAEER--GLTLI 147

Query: 148 RQFENPANPKIHY----ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIK 203
             +++P     H      T   E++++ G  +DA    +G GG ++G     +  +P  K
Sbjct: 148 PPYDHP-----HVIAGQGTAAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCK 201

Query: 204 VYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHN 246
           VYGVEP      N GQ+         FRS      G +VH+  
Sbjct: 202 VYGVEPEAG---NDGQQS--------FRS------GEIVHIDT 227

Length = 321

>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 15/184 (8%)

Query: 10  DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK 69
           DV+ + GNTP++ L N+      ++  K E   P  S KDR     +  A+++     G 
Sbjct: 21  DVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEE-----GS 75

Query: 70  TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGAEIILADSALRFE 128
             +I  ++GNT    A  AA  G   IIV+P       ++    A GAEII  +    F+
Sbjct: 76  EAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFD 133

Query: 129 EILEKGEEILKKTPDGYLLRQFENPANP-KIHYETTGP-EIWQDSGGKVDAFISGIGTGG 186
           + L+    I  + P   +     N  NP +I  + T   EI        D     +G  G
Sbjct: 134 DALKAVRNIAAEEPITLV-----NSVNPYRIEGQKTAAFEICDQLQRAPDVLAIPVGNAG 188

Query: 187 TVTG 190
            +T 
Sbjct: 189 NITA 192

Length = 352

>gnl|CDD|235994 PRK07334, PRK07334, threonine dehydratase; Provisional

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 27/212 (12%)

Query: 17  NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIA---YSMIKDAE-DKGLITPGKTTL 72
            TP V+   +     A +  K E ++  +S K+R A     ++ + E  +G+I       
Sbjct: 23  RTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGVIA------ 76

Query: 73  IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILE 132
             +++GN   G+A+ A   G    IVMP      +    R  GAE++L       +E   
Sbjct: 77  --MSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARA 132

Query: 133 KGEEILKKTPDGYLLRQFENPAN-PKI--HYETTGPEIWQDSGGKVDAFISGIGTGGTVT 189
              E+ ++  +G     F +P + P +     T   E+ +D+   +D  +  IG GG ++
Sbjct: 133 HARELAEE--EG---LTFVHPYDDPAVIAGQGTVALEMLEDAPD-LDTLVVPIGGGGLIS 186

Query: 190 GAGRFLKENNPDIKVYGVE----PSESAVLNG 217
           G     K   PDI++ GV+    PS  A + G
Sbjct: 187 GMATAAKALKPDIEIIGVQTELYPSMYAAIKG 218

Length = 403

>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 16  GNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEV 75
           G TP++            +  K ET  P  S +DR+A   +                I  
Sbjct: 65  GGTPLIRARISEKLGEN-VYIKDETRNPTGSFRDRLATVAVSYGLPYA-----ANGFIVA 118

Query: 76  TSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA----DSALRFEEIL 131
           + GN    +A  +A  G    +V+P      + I + A GA+II      D A+ + E L
Sbjct: 119 SDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGESVDEAIEYAEEL 178

Query: 132 EKGEEILKKTPD 143
            +   +   TP+
Sbjct: 179 ARLNGLYNVTPE 190

Length = 442

>gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119
           P    +I  T GN G  +AF A   G    IV+P   S+E+   +RALGAE+I
Sbjct: 68  PRVRGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELI 120

Length = 322

>gnl|CDD|234245 TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 68  GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA----DS 123
           G  T +  T GN G G+A+ A   G   ++ MP   + ER   +RA GAE  +     D 
Sbjct: 112 GDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQERLENIRAEGAECTITDLNYDD 171

Query: 124 ALRF--EEILEKGEEILKKTP-DGY 145
           A+R   +   E G  +++ T  +GY
Sbjct: 172 AVRLAWKMAQENGWVMVQDTAWEGY 196

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. Length = 396

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 52  AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI--AAARGYNLIIVMPSTCSMERRI 109
           A+  +    D+  + PG+T L  V     GVG A I  A A G  ++ V     S E+  
Sbjct: 130 AWLAL---FDRAGLKPGETVL--VHGAAGGVGSAAIQLAKALGATVVAV---VSSSEKLE 181

Query: 110 VLRALGAEIILADSALRFEEILEK 133
           +L+ LGA+ ++      F E + +
Sbjct: 182 LLKELGADHVINYREEDFVEQVRE 205

Length = 326

>gnl|CDD|215524 PLN02970, PLN02970, serine racemase

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 42/182 (23%), Positives = 66/182 (36%), Gaps = 25/182 (13%)

Query: 37  KLETMEPCSSVKDRIAY----SMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARG 92
           K E  +   + K R A     S+  D  +KG++T         +SGN    LA  A  RG
Sbjct: 47  KCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTH--------SSGNHAAALALAAKLRG 98

Query: 93  YNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEI---LKKTPDGYLLRQ 149
               IV+P      +   +   G  I         E  +E  E +   +++     L+  
Sbjct: 99  IPAYIVVPKNAPACKVDAVIRYGGIIT------WCEPTVESREAVAARVQQETGAVLIHP 152

Query: 150 FENPANPKIHYE-TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVE 208
           + +     I  + T   E  +     +D  I  I  GG ++G     K   P IK+   E
Sbjct: 153 YNDG--RVISGQGTIALEFLEQVPE-LDVIIVPISGGGLISGIALAAKAIKPSIKIIAAE 209

Query: 209 PS 210
           P 
Sbjct: 210 PK 211

Length = 328

>gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 68  GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
           G+ T    T GN G G+A+ A   G   ++ MP   + ER   +  LGAE  + D  + +
Sbjct: 93  GQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITD--MNY 150

Query: 128 EEIL--------EKGEEILKKTP-DGY 145
           ++ +        + G  +++ T  +GY
Sbjct: 151 DDTVRLAMQMAQQHGWVVVQDTAWEGY 177

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase) [Energy metabolism, Other]. Length = 376

>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 30/217 (13%)

Query: 16  GNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEV 75
           GNTP++ L N+       +  K E + P  S KDR     +  A+++     G   +I  
Sbjct: 27  GNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEE-----GAEAVICA 81

Query: 76  TSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRAL------GAEIILADSALRFEE 129
           ++GNT    A  A   G    IV+P     E ++ L  L      GA+II       F+E
Sbjct: 82  STGNTSAAAAAYATRAGLKAYIVIP-----EGKVALGKLAQAVMYGADIISIQG--NFDE 134

Query: 130 ILEKGEEILKKTPDGYLLRQFENPANP-KIHYETTGP-EIWQDSGGKVDAFISGIGTGGT 187
            L+   E+ +      +     N  NP ++  + T   EI +  G   D     +G  G 
Sbjct: 135 ALKSVRELAETEAVTLV-----NSVNPYRLEGQKTAAFEICEQLGSAPDVLAIPVGNAGN 189

Query: 188 VTGAGRFLKENNPDI-----KVYGVEPSESAVLNGGQ 219
           ++   +  KE N        +++G E   +A +  G+
Sbjct: 190 ISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGK 226

Length = 351

>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 25/198 (12%)

Query: 18  TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIA----YSMIKDAEDKGLITPGKTTLI 73
           TP+V   ++       +  KLET++P  S K R A     S+      +G++T       
Sbjct: 20  TPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVT------- 72

Query: 74  EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI-ILADSALRFEEILE 132
             ++GN G  LA+ A A G    I M       +   +RALGAE+ I+  S        +
Sbjct: 73  -ASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRSQ------DD 125

Query: 133 KGEEILKKTPD-GY-LLRQFENPANPKIHYE-TTGPEIWQDSGGKVDAFISGIGTGGTVT 189
              E+ +   + G  ++  F++P    I  + T G EI +     V   +  +  GG  +
Sbjct: 126 AQAEVERLVREEGLTMVPPFDDPR--IIAGQGTIGLEILEAL-PDVATVLVPLSGGGLAS 182

Query: 190 GAGRFLKENNPDIKVYGV 207
           G    +K   P I+V GV
Sbjct: 183 GVAAAVKAIRPAIRVIGV 200

Length = 322

>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 41/198 (20%)

Query: 32  ARIAAKLETMEPCSSVKDRIAYSMI----KDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87
           A +  K E ++P  S K R AY+ I     +    G++          ++GN   G+A+ 
Sbjct: 40  ANVYLKREDLQPVRSYKLRGAYNAISQLSDEELAAGVVCA--------SAGNHAQGVAYA 91

Query: 88  AAARGYNLIIVMPSTCSMERRIVLRALGA---EIILA----DSALRFEEILEKGEEILKK 140
               G   +I MP T   ++   +R  G    EI+L     D +       E  EE    
Sbjct: 92  CRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDS--AAAAQEYAEET--- 146

Query: 141 TPDGYLLRQFENP------ANPKIHYETTGPEIWQDSG--GKVDAFISGIGTGGTVTGAG 192
                 +  F++P              T   EI +     G  D     +G GG ++G  
Sbjct: 147 --GATFIPPFDDPDVIAGQG-------TVAVEILEQLEKEGSPDYVFVPVGGGGLISGVT 197

Query: 193 RFLKENNPDIKVYGVEPS 210
            +LKE +P  K+ GVEP+
Sbjct: 198 TYLKERSPKTKIIGVEPA 215

Length = 420

>gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 24/55 (43%), Positives = 29/55 (52%)

Query: 68  GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
           G  T    T GN G G+A+ A   G   +I MP   S ER   +RALGAE I+ D
Sbjct: 115 GDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITD 169

Length = 399

>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 52/196 (26%), Positives = 80/196 (40%), Gaps = 46/196 (23%)

Query: 37  KLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS-GNTGVGLAFIAAARGYNL 95
           KLE ++   S K R A++ +       L  P     +   S GN G+ +A+ AAA G   
Sbjct: 42  KLEHLQHTGSFKARGAFNRL-------LAAPVPAAGVVAASGGNAGLAVAYAAAALGVPA 94

Query: 96  IIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPAN 155
            + +P T    +   LRALGAE+++  +   + + LE  +    +T  G LL        
Sbjct: 95  TVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET--GALL-------- 142

Query: 156 PKIH-YE---------TTGPEIWQDSGGKVDAFISGIGTGGTVTG-----AGRFLKENNP 200
              H Y+         T G EI +     VD  +  +G GG + G      GR       
Sbjct: 143 --CHAYDQPEVLAGAGTLGLEIEEQ-APGVDTVLVAVGGGGLIAGIAAWFEGR------- 192

Query: 201 DIKVYGVEPSESAVLN 216
             +V  VEP  +  L+
Sbjct: 193 -ARVVAVEPEGAPTLH 207

Length = 310

>gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 37  KLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLI 96
           KL+ ++P  S KDR  Y  +   +++G+       +I+ +SGN  + LA  + + G  + 
Sbjct: 77  KLDYLQPTGSFKDRGTYVTVAKLKEEGI----NEVVID-SSGNAALSLALYSLSEGIKVH 131

Query: 97  IVMPSTCSMERRIVLRALGAEI 118
           + +    S E+  +L  LGAE+
Sbjct: 132 VFVSYNASKEKISLLSRLGAEL 153

Length = 347

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 18/108 (16%)

Query: 40  TMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI--AAARGYNLII 97
           ++ PC+      AY +++D        PG    +     N+ VG A I  A   G   I 
Sbjct: 128 SVNPCT------AYRLLEDFVKLQ---PGDW--VIQNGANSAVGQAVIQLAKLLGIKTIN 176

Query: 98  VM---PSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTP 142
           V+   P    ++ R  L+ALGA+ +L +  LR     E  +      P
Sbjct: 177 VVRDRPDLEELKER--LKALGADHVLTEEELRSLLATELLKSAPGGRP 222

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	100.0
PLN03013	429	cysteine synthase	100.0
PLN02565	322	cysteine synthase	100.0
PRK11761	296	cysM cysteine synthase B; Provisional	100.0
COG1171	347	IlvA Threonine dehydratase [Amino acid transport a	100.0
PLN00011	323	cysteine synthase	100.0
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	100.0
TIGR01136	299	cysKM cysteine synthases. This model discriminates	100.0
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	100.0
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	100.0
PRK08526	403	threonine dehydratase; Provisional	100.0
PRK07476	322	eutB threonine dehydratase; Provisional	100.0
PRK10717	330	cysteine synthase A; Provisional	100.0
TIGR02991	317	ectoine_eutB ectoine utilization protein EutB. Mem	100.0
PLN02970	328	serine racemase	100.0
PRK12483	521	threonine dehydratase; Reviewed	100.0
PRK06382	406	threonine dehydratase; Provisional	100.0
PRK08198	404	threonine dehydratase; Provisional	100.0
PRK08638	333	threonine dehydratase; Validated	100.0
PRK06110	322	hypothetical protein; Provisional	100.0
cd01561	291	CBS_like CBS_like: This subgroup includes Cystathi	100.0
PRK07048	321	serine/threonine dehydratase; Validated	100.0
TIGR02079	409	THD1 threonine dehydratase. This model represents	100.0
PLN02550	591	threonine dehydratase	100.0
cd06447	404	D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph	100.0
PLN02356	423	phosphateglycerate kinase	100.0
PRK08639	420	threonine dehydratase; Validated	100.0
PRK08813	349	threonine dehydratase; Provisional	100.0
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	100.0
PRK07334	403	threonine dehydratase; Provisional	100.0
PRK06815	317	hypothetical protein; Provisional	100.0
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	100.0
PRK02991	441	D-serine dehydratase; Provisional	100.0
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	100.0
PRK08246	310	threonine dehydratase; Provisional	100.0
TIGR02035	431	D_Ser_am_lyase D-serine ammonia-lyase. This family	100.0
PRK09224	504	threonine dehydratase; Reviewed	100.0
PRK06608	338	threonine dehydratase; Provisional	100.0
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	100.0
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	100.0
KOG1250	457	consensus Threonine/serine dehydratases [Amino aci	100.0
PRK06352	351	threonine synthase; Validated	100.0
PRK07591	421	threonine synthase; Validated	100.0
PRK08197	394	threonine synthase; Validated	100.0
KOG1252	362	consensus Cystathionine beta-synthase and related	100.0
PRK06381	319	threonine synthase; Validated	100.0
KOG1251	323	consensus Serine racemase [Signal transduction mec	100.0
PRK07409	353	threonine synthase; Validated	100.0
PRK06450	338	threonine synthase; Validated	100.0
PRK06260	397	threonine synthase; Validated	100.0
cd01563	324	Thr-synth_1 Threonine synthase is a pyridoxal phos	100.0
PRK06721	352	threonine synthase; Reviewed	100.0
PLN02569	484	threonine synthase	100.0
PRK08329	347	threonine synthase; Validated	100.0
PRK08206	399	diaminopropionate ammonia-lyase; Provisional	100.0
PRK05638	442	threonine synthase; Validated	100.0
cd00640	244	Trp-synth-beta_II Tryptophan synthase beta superfa	100.0
TIGR01747	376	diampropi_NH3ly diaminopropionate ammonia-lyase fa	100.0
TIGR00260	328	thrC threonine synthase. Involved in threonine bio	100.0
TIGR03528	396	2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem	100.0
PRK13028	402	tryptophan synthase subunit beta; Provisional	100.0
TIGR00263	385	trpB tryptophan synthase, beta subunit. Tryptophan	100.0
PRK03910	331	D-cysteine desulfhydrase; Validated	100.0
PRK04346	397	tryptophan synthase subunit beta; Validated	100.0
TIGR01275	311	ACC_deam_rel pyridoxal phosphate-dependent enzymes	100.0
PLN02618	410	tryptophan synthase, beta chain	100.0
PF00291	306	PALP: Pyridoxal-phosphate dependent enzyme; InterP	100.0
TIGR03844	398	cysteate_syn cysteate synthase. Members of this fa	100.0
cd06446	365	Trp-synth_B Tryptophan synthase-beta: Trptophan sy	100.0
TIGR01415	419	trpB_rel pyridoxal-phosphate dependent TrpB-like e	100.0
PRK12390	337	1-aminocyclopropane-1-carboxylate deaminase; Provi	100.0
cd06449	307	ACCD Aminocyclopropane-1-carboxylate deaminase (AC	100.0
TIGR01274	337	ACC_deam 1-aminocyclopropane-1-carboxylate deamina	100.0
PRK12391	427	tryptophan synthase subunit beta; Reviewed	100.0
KOG1481	391	consensus Cysteine synthase [Amino acid transport	100.0
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	100.0
PRK14045	329	1-aminocyclopropane-1-carboxylate deaminase; Provi	100.0
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	100.0
COG0498	411	ThrC Threonine synthase [Amino acid transport and	100.0
COG0133	396	TrpB Tryptophan synthase beta chain [Amino acid tr	99.97
PRK09225	462	threonine synthase; Validated	99.97
COG2515	323	Acd 1-aminocyclopropane-1-carboxylate deaminase [A	99.96
cd01560	460	Thr-synth_2 Threonine synthase catalyzes the final	99.96
COG1350	432	Predicted alternative tryptophan synthase beta-sub	99.94
KOG1395	477	consensus Tryptophan synthase beta chain [Amino ac	99.93
COG3048	443	DsdA D-serine dehydratase [Amino acid transport an	99.92
PF03808	172	Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp	93.32
cd06533	171	Glyco_transf_WecG_TagA The glycosyltransferase Wec	90.55
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	90.19
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	89.33
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	88.85
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	88.6
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	88.23
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	88.2
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	85.93
TIGR00696	177	wecB_tagA_cpsF bacterial polymer biosynthesis prot	85.82
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	85.77
PRK03562	621	glutathione-regulated potassium-efflux system prot	85.66
PRK10669	558	putative cation:proton antiport protein; Provision	85.35
COG0379	324	NadA Quinolinate synthase [Coenzyme metabolism]	85.2
TIGR01064	473	pyruv_kin pyruvate kinase. This enzyme is a homote	84.49
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	84.37
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	83.98
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	83.36
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	82.6
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	82.58
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	82.42
PF00764	388	Arginosuc_synth: Arginosuccinate synthase; InterPr	82.38
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	82.19
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	82.17
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	81.69
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	81.61
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	81.34
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	81.31
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	81.26
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	81.06
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	80.4

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.1e-58  Score=395.30  Aligned_cols=246  Identities=50%  Similarity=0.813  Sum_probs=227.6

Q ss_pred             HhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113            9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus         9 ~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      +.+.+.+++|||+++.++....+++||+|+|++||+||.|||.+.+|+.+|+++|.|+||. +||++||||+|.+||+.|
T Consensus         3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~va   81 (300)
T COG0031           3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVA   81 (300)
T ss_pred             cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHH
Confidence            4577888999999999998888899999999999999999999999999999999999996 699999999999999999


Q ss_pred             HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHHHHHhCCC-eEEeCCCCCCcchHhhHhhHHHH
Q 025113           89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR-FEEILEKGEEILKKTPD-GYLLRQFENPANPKIHYETTGPE  166 (257)
Q Consensus        89 ~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~E  166 (257)
                      +.+|+++++|||++++.++++.|+.|||+|+.++...+ +..+.+++++++++.|+ .+|++||+||+||.+||.|++.|
T Consensus        82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E  161 (300)
T COG0031          82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE  161 (300)
T ss_pred             HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence            99999999999999999999999999999999998444 88899999999999988 77888999999999999999999


Q ss_pred             HHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccc------------eeccccCCeEE
Q 025113          167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLF------------IFISYLFRSFV  234 (257)
Q Consensus       167 i~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~------------~i~~~~~~~~v  234 (257)
                      |++|+++.+|++|+.+|||||++|++++||+.+|++++|+|||.+|+.+.++. +++            .+...+.|+++
T Consensus       162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~  240 (300)
T COG0031         162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVI  240 (300)
T ss_pred             HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEE
Confidence            99999888999999999999999999999999999999999999998776442 222            23345689999


Q ss_pred             EeChHHHHHHHHHHHhhcCeec
Q 025113          235 LVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       235 ~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                      .|+|+|+.+..+.|++++++++
T Consensus       241 ~V~d~~A~~~~r~La~~eGilv  262 (300)
T COG0031         241 RVSDEEAIATARRLAREEGLLV  262 (300)
T ss_pred             EECHHHHHHHHHHHHHHhCeee
Confidence            9999999999999999999986

>PLN03013 cysteine synthase

Probab=100.00  E-value=5.5e-58  Score=414.12  Aligned_cols=252  Identities=58%  Similarity=0.979  Sum_probs=230.0

Q ss_pred             hhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHH
Q 025113            6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA   85 (257)
Q Consensus         6 ~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA   85 (257)
                      .+++++...+++|||++++.++...+.+||+|+|++|||||||||++.+++.++.++|.+.||.++||++|+||||.|+|
T Consensus       112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA  191 (429)
T PLN03013        112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA  191 (429)
T ss_pred             HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence            46788999999999999999887777899999999999999999999999999999999999977899999999999999


Q ss_pred             HHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHH
Q 025113           86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP  165 (257)
Q Consensus        86 ~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~  165 (257)
                      ++|+.+|++++||||+.+++.|+++|+.+||+|+.+++..+++++.+.+++++++.++++|++||+||.|+..||.|+|+
T Consensus       192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~  271 (429)
T PLN03013        192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP  271 (429)
T ss_pred             HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999997656778889999998887789999999999997789999999


Q ss_pred             HHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCccc------------ceeccccCCeE
Q 025113          166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGL------------FIFISYLFRSF  233 (257)
Q Consensus       166 Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~------------~~i~~~~~~~~  233 (257)
                      ||++|+++++|+||+|+||||+++|+++++|+..|+++||+|||.+++.+.++.+.+            +.+.....|++
T Consensus       272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~v  351 (429)
T PLN03013        272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEV  351 (429)
T ss_pred             HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEE
Confidence            999999778999999999999999999999999999999999999998775433322            22334567999


Q ss_pred             EEeChHHHHHHHHHHHhhcCeecC
Q 025113          234 VLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       234 v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.|+|+|+.++++.|+++++++|.
T Consensus       352 v~VsD~ea~~a~r~La~~eGi~vG  375 (429)
T PLN03013        352 IAISSEEAIETAKQLALKEGLMVG  375 (429)
T ss_pred             EEECHHHHHHHHHHHHHHcCCEEe
Confidence            999999999999999999999873

>PLN02565 cysteine synthase

Probab=100.00  E-value=2e-57  Score=402.14  Aligned_cols=251  Identities=66%  Similarity=1.060  Sum_probs=225.5

Q ss_pred             hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113            7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF   86 (257)
Q Consensus         7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~   86 (257)
                      .++.++..+++|||++++.++...+.+||+|+|++|||||||||++.+++..+.+.|.+.+|.+.||++|+||||.|+|+
T Consensus         5 ~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~   84 (322)
T PLN02565          5 IAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAF   84 (322)
T ss_pred             hhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHH
Confidence            45678899999999999887666667999999999999999999999999999999998888778999999999999999


Q ss_pred             HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113           87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE  166 (257)
Q Consensus        87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E  166 (257)
                      +|+.+|++++||||+++++.|+++|+.+||+|+.++...+++++.+.+++++++.++++|++||+|+.|+..||.|+|+|
T Consensus        85 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~E  164 (322)
T PLN02565         85 MAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPE  164 (322)
T ss_pred             HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875456888899999988876889999999999988999999999


Q ss_pred             HHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccc------------eeccccCCeEE
Q 025113          167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLF------------IFISYLFRSFV  234 (257)
Q Consensus       167 i~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~------------~i~~~~~~~~v  234 (257)
                      |++|++++||+||+|+|+||+++|++.++|+++|++|||+|||++++++.++.+.++            .+.....|+++
T Consensus       165 i~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v  244 (322)
T PLN02565        165 IWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVV  244 (322)
T ss_pred             HHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEE
Confidence            999997679999999999999999999999999999999999999988754433221            11123578899


Q ss_pred             EeChHHHHHHHHHHHhhcCeecC
Q 025113          235 LVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       235 ~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .|+|+|+.+++++|++++++++.
T Consensus       245 ~V~d~ea~~a~~~l~~~~gi~vg  267 (322)
T PLN02565        245 QVSSDEAIETAKLLALKEGLLVG  267 (322)
T ss_pred             EECHHHHHHHHHHHHHHhCcEEe
Confidence            99999999999999999998873

>PRK11761 cysM cysteine synthase B; Provisional

Probab=100.00  E-value=1.1e-56  Score=393.61  Aligned_cols=249  Identities=39%  Similarity=0.609  Sum_probs=224.3

Q ss_pred             hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113            7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF   86 (257)
Q Consensus         7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~   86 (257)
                      .++++...+++|||++++.|+...|.+||+|+|++|||||||+|++.+++.++.++|.+.+| .+||++|+||||+|+|+
T Consensus         2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~   80 (296)
T PRK11761          2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAM   80 (296)
T ss_pred             ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHH
Confidence            45788889999999999999877788999999999999999999999999999999988877 45999999999999999


Q ss_pred             HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113           87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE  166 (257)
Q Consensus        87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E  166 (257)
                      +|+.+|++++||||+++++.|++.++.+||+|+.++...+++++.+.+++++++. +++|++||+|+.|+..||.|+++|
T Consensus        81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E  159 (296)
T PRK11761         81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE  159 (296)
T ss_pred             HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence            9999999999999999999999999999999999996456888888899988876 789999999999988899999999


Q ss_pred             HHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCC--cc--cceec-cccCCeEEEeChHHH
Q 025113          167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQ--RG--LFIFI-SYLFRSFVLVDDGAV  241 (257)
Q Consensus       167 i~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~--~~--~~~i~-~~~~~~~v~v~d~e~  241 (257)
                      |++|+++++|+||+|+|+||+++|++.+||+++|+++||+|||.+++.+.+-.  +.  ...+. ....|+++.|+|+|+
T Consensus       160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~  239 (296)
T PRK11761        160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPGIRRWPEEYLPKIFDASRVDRVLDVSQQEA  239 (296)
T ss_pred             HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcCCCCCCCCcCCcccChhhCCEEEEECHHHH
Confidence            99999767999999999999999999999999999999999999987775421  11  12333 456789999999999


Q ss_pred             HHHHHHHHhhcCeecC
Q 025113          242 VHLHNYLLLHIFTLVC  257 (257)
Q Consensus       242 ~~a~~~l~~~~~~~v~  257 (257)
                      .+|+++|++++++++.
T Consensus       240 ~~a~~~l~~~~gi~ve  255 (296)
T PRK11761        240 ENTMRRLAREEGIFCG  255 (296)
T ss_pred             HHHHHHHHHHhCceEc
Confidence            9999999999999874

>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-57  Score=396.30  Aligned_cols=247  Identities=26%  Similarity=0.358  Sum_probs=226.2

Q ss_pred             hhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113            4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG   83 (257)
Q Consensus         4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a   83 (257)
                      +..++.+++..+.+|||.+++.|++.+|.+||+|+|++||+||||.||+++.++.+.+++..   ...||++|+||||++
T Consensus        12 i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQG   88 (347)
T COG1171          12 ILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQG   88 (347)
T ss_pred             HHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHH
Confidence            45678899999999999999999999999999999999999999999999999998644221   356999999999999


Q ss_pred             HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113           84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT  163 (257)
Q Consensus        84 lA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  163 (257)
                      +||+|+++|++++||||.+++..|++.++.|||+|++++  .+|+++.+.++++++++ |+.|++|||+|+. ++||+|+
T Consensus        89 vA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g--~~~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi  164 (347)
T COG1171          89 VAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHG--DNFDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTI  164 (347)
T ss_pred             HHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEEC--CCHHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHH
Confidence            999999999999999999999999999999999999999  46999999999999998 9999999999998 8999999


Q ss_pred             HHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----C-------------------Cc
Q 025113          164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----G-------------------QR  220 (257)
Q Consensus       164 ~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~-------------------~~  220 (257)
                      +.||++|+...||+||||+|+||+++|++.++|.+.|+++||||||++++++..    |                   .+
T Consensus       165 ~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~  244 (347)
T COG1171         165 ALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRP  244 (347)
T ss_pred             HHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCC
Confidence            999999996447999999999999999999999999999999999999998742    1                   12


Q ss_pred             c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +  .|++++.+.|++++|+|+||.++|+.|+++.++++.
T Consensus       245 g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~E  283 (347)
T COG1171         245 GDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAE  283 (347)
T ss_pred             CHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeecc
Confidence            2  378899999999999999999999999999998863

>PLN00011 cysteine synthase

Probab=100.00  E-value=6.2e-56  Score=393.42  Aligned_cols=257  Identities=67%  Similarity=1.026  Sum_probs=228.4

Q ss_pred             CCchhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChH
Q 025113            1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNT   80 (257)
Q Consensus         1 ~~~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~   80 (257)
                      |++.--.++.+...+++|||+++++++...+.+||+|+|++|||||||||++.+++..+.++|.+.||.++||++|+|||
T Consensus         1 ~~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~   80 (323)
T PLN00011          1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNT   80 (323)
T ss_pred             CcchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChH
Confidence            56665667778889999999999998876667999999999999999999999999999999999998778999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhH
Q 025113           81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHY  160 (257)
Q Consensus        81 ~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  160 (257)
                      |+|+|++|+.+|++++||||..+++.|+++++.+||+|+.++...+.+++.+.+++++++.++++|++||+|+.|+..||
T Consensus        81 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~  160 (323)
T PLN00011         81 GIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHY  160 (323)
T ss_pred             HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHH
Confidence            99999999999999999999999999999999999999999965445566778888888766789999999999988899


Q ss_pred             hhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCccc------------ceeccc
Q 025113          161 ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGL------------FIFISY  228 (257)
Q Consensus       161 ~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~------------~~i~~~  228 (257)
                      .|+++||++|+.++||+||+|+|+||+++|++.++|+++|+++||||||.+++++..+.+..            +.+...
T Consensus       161 ~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~  240 (323)
T PLN00011        161 RTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLT  240 (323)
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChh
Confidence            99999999998668999999999999999999999999999999999999998775432221            122234


Q ss_pred             cCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          229 LFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       229 ~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ..|+++.|+|+|+.+|+++|+++++++++
T Consensus       241 ~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~  269 (323)
T PLN00011        241 IVDEIIQVTGEEAIETAKLLALKEGLLVG  269 (323)
T ss_pred             hCCeEEEECHHHHHHHHHHHHHhcCCeEc
Confidence            57889999999999999999999999874

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=100.00  E-value=5.1e-56  Score=398.73  Aligned_cols=251  Identities=53%  Similarity=0.883  Sum_probs=227.0

Q ss_pred             hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113            7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF   86 (257)
Q Consensus         7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~   86 (257)
                      +.+++...+++|||++++.++...+++||+|+|++|||||||||++.+++.++.++|.+.||.++||++|+||||+|+|+
T Consensus        49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~  128 (368)
T PLN02556         49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF  128 (368)
T ss_pred             hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence            45788999999999999999877888999999999999999999999999999999999999888999999999999999


Q ss_pred             HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113           87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE  166 (257)
Q Consensus        87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E  166 (257)
                      +|+.+|++|+||||..++..|++.|+.+||+|+.++...++...++.+++++++.++++|++||+||.|+..||.|+++|
T Consensus       129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E  208 (368)
T PLN02556        129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE  208 (368)
T ss_pred             HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999864445577888888888877899999999999966799999999


Q ss_pred             HHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccc------------eeccccCCeEE
Q 025113          167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLF------------IFISYLFRSFV  234 (257)
Q Consensus       167 i~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~------------~i~~~~~~~~v  234 (257)
                      |++|+.+.+|+||+|+|||||++|+++++|+.+|+++||+|||.+++.+.++.+..+            .+.....|+++
T Consensus       209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v  288 (368)
T PLN02556        209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVL  288 (368)
T ss_pred             HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEE
Confidence            999986689999999999999999999999999999999999999877755433222            22234678899


Q ss_pred             EeChHHHHHHHHHHHhhcCeecC
Q 025113          235 LVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       235 ~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .|+|+|+.+++++|+++++++++
T Consensus       289 ~Vsd~ea~~a~r~l~~~eGi~vg  311 (368)
T PLN02556        289 EVSSEDAVNMARELALKEGLMVG  311 (368)
T ss_pred             EECHHHHHHHHHHHHHHcCCEEe
Confidence            99999999999999999999874

>TIGR01136 cysKM cysteine synthases

Probab=100.00  E-value=2.8e-55  Score=385.86  Aligned_cols=245  Identities=52%  Similarity=0.835  Sum_probs=221.4

Q ss_pred             hcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHc
Q 025113           12 TELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR   91 (257)
Q Consensus        12 ~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~   91 (257)
                      ...+++|||++++.|+...+.+||+|+|++|||||||+|++.+++..+.+.|.+.+| ++|+++|+||||+|+|++|+.+
T Consensus         2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~   80 (299)
T TIGR01136         2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAK   80 (299)
T ss_pred             ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHc
Confidence            456899999999999988888999999999999999999999999999999987776 4589999999999999999999


Q ss_pred             CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhh
Q 025113           92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDS  171 (257)
Q Consensus        92 g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql  171 (257)
                      |++|+||||+++++.|+++++.+||+|+.++++.+++++.+.+++++++.+++++++||+|+.+++.||.|+++||++|+
T Consensus        81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql  160 (299)
T TIGR01136        81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT  160 (299)
T ss_pred             CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999997656789999999998886568899999999998899999999999999


Q ss_pred             CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCc------------ccceeccccCCeEEEeChH
Q 025113          172 GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR------------GLFIFISYLFRSFVLVDDG  239 (257)
Q Consensus       172 ~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~------------~~~~i~~~~~~~~v~v~d~  239 (257)
                      +++||+||+|+|+||+++|++.+|+++.|.+|||+|||.+++++.+..+            .++.+.....|+++.|+|+
T Consensus       161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~  240 (299)
T TIGR01136       161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE  240 (299)
T ss_pred             CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence            7679999999999999999999999999999999999999987754211            1223345567899999999


Q ss_pred             HHHHHHHHHHhhcCeecC
Q 025113          240 AVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       240 e~~~a~~~l~~~~~~~v~  257 (257)
                      |+.+|+++|+++++++++
T Consensus       241 e~~~a~~~l~~~~gi~~e  258 (299)
T TIGR01136       241 DAIETARRLAREEGILVG  258 (299)
T ss_pred             HHHHHHHHHHHHhCceEc
Confidence            999999999999999874

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>TIGR01138 cysM cysteine synthase B

Probab=100.00  E-value=3.2e-55  Score=383.45  Aligned_cols=245  Identities=40%  Similarity=0.641  Sum_probs=219.0

Q ss_pred             hhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHH
Q 025113           11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA   90 (257)
Q Consensus        11 i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~   90 (257)
                      |...+++|||++++.++...|.+||+|+|++|||||||||++.+++.++.++|.+.+| .+||++|+||||+|+|++|+.
T Consensus         2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~   80 (290)
T TIGR01138         2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAAL   80 (290)
T ss_pred             hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHH
Confidence            4567899999999999887888999999999999999999999999999999988887 469999999999999999999


Q ss_pred             cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhh
Q 025113           91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD  170 (257)
Q Consensus        91 ~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q  170 (257)
                      +|++++||||+++++.|++.|+.+||+|+.++.+.+++++.+.+++++++. +.+|++||+|+.|+..||.|+++||++|
T Consensus        81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q  159 (290)
T TIGR01138        81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ  159 (290)
T ss_pred             cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence            999999999999999999999999999999997556888889999998887 4468999999999877899999999999


Q ss_pred             hCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCc-----ccceeccccCCeEEEeChHHHHHHH
Q 025113          171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR-----GLFIFISYLFRSFVLVDDGAVVHLH  245 (257)
Q Consensus       171 l~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~-----~~~~i~~~~~~~~v~v~d~e~~~a~  245 (257)
                      +++++|+||+|+|+||+++|++.++|+++|++|||+|||.+++.+.+...     .+........|+++.|+|+|+.+++
T Consensus       160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~  239 (290)
T TIGR01138       160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPGIRRWPTEYLPGIFDASLVDRVLDIHQRDAENTM  239 (290)
T ss_pred             cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccCCCCCCCCcCCcccChhhCcEEEEECHHHHHHHH
Confidence            97679999999999999999999999999999999999999877654111     0111223457899999999999999


Q ss_pred             HHHHhhcCeecC
Q 025113          246 NYLLLHIFTLVC  257 (257)
Q Consensus       246 ~~l~~~~~~~v~  257 (257)
                      ++|++++++++.
T Consensus       240 ~~l~~~~gi~~g  251 (290)
T TIGR01138       240 RELAVREGIFCG  251 (290)
T ss_pred             HHHHHHhCceEc
Confidence            999999999873

Alternate name: O-acetylserine (thiol)-lyase

>TIGR01139 cysK cysteine synthase A

Probab=100.00  E-value=2.4e-54  Score=379.85  Aligned_cols=244  Identities=51%  Similarity=0.836  Sum_probs=216.1

Q ss_pred             hcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHc
Q 025113           12 TELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR   91 (257)
Q Consensus        12 ~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~   91 (257)
                      ...+++|||+++++ ....+.+||+|+|++|||||||||++.+++..+.++|.+.+| .+|+++|+||||+|+|++|+++
T Consensus         2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~   79 (298)
T TIGR01139         2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAAR   79 (298)
T ss_pred             ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHc
Confidence            45789999999998 455678999999999999999999999999999999987776 4589999999999999999999


Q ss_pred             CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCC-eEEeCCCCCCcchHhhHhhHHHHHHhh
Q 025113           92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPD-GYLLRQFENPANPKIHYETTGPEIWQD  170 (257)
Q Consensus        92 g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~q  170 (257)
                      |++|+||||+++++.|++.|+.+||+|+.++++.++.++.+.+++++++.++ +++++||+||.|++.||.|+++||++|
T Consensus        80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q  159 (298)
T TIGR01139        80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD  159 (298)
T ss_pred             CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999754456888889999888744 559999999999889999999999999


Q ss_pred             hCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcc------------cceeccccCCeEEEeCh
Q 025113          171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG------------LFIFISYLFRSFVLVDD  238 (257)
Q Consensus       171 l~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~------------~~~i~~~~~~~~v~v~d  238 (257)
                      +++.||+||+|+|+||+++|++.+|+++.+++|||+|||.+++++....+.            ++.+.....|+++.|+|
T Consensus       160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d  239 (298)
T TIGR01139       160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD  239 (298)
T ss_pred             hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence            976799999999999999999999999999999999999998776532211            11222345788999999


Q ss_pred             HHHHHHHHHHHhhcCeecC
Q 025113          239 GAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       239 ~e~~~a~~~l~~~~~~~v~  257 (257)
                      +|+.+++++|+++++++++
T Consensus       240 ~e~~~a~~~l~~~~gi~~~  258 (298)
T TIGR01139       240 EEAIETARRLAAEEGILVG  258 (298)
T ss_pred             HHHHHHHHHHHHhcCceEc
Confidence            9999999999999999874

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>PRK08526 threonine dehydratase; Provisional

Probab=100.00  E-value=2.8e-55  Score=398.51  Aligned_cols=246  Identities=24%  Similarity=0.331  Sum_probs=222.3

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||+++++|+...|.+||+|+|++|||||||+|++.+.+..+.+.+.    ..+||++|+||||+
T Consensus         6 ~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~   81 (403)
T PRK08526          6 KIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQ   81 (403)
T ss_pred             HHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHH
Confidence            45678899999999999999999998888899999999999999999999999998876654    35699999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      ++|++|+.+|++++||||.+++..|++.++.|||+|+.++.  +++++.+.+.+++++. +++|++||+||.+ +.||+|
T Consensus        82 avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gt  157 (403)
T PRK08526         82 GVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGT  157 (403)
T ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHH
Confidence            99999999999999999999999999999999999999984  6999999999998886 7899999999987 899999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------c
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------R  220 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~  220 (257)
                      +|.||++|++ ++|+||+|+|+||+++|++.++|..+|+++||||||++++++..    +.                  +
T Consensus       158 ia~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~  236 (403)
T PRK08526        158 IALEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDA  236 (403)
T ss_pred             HHHHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCC
Confidence            9999999994 79999999999999999999999999999999999999987621    10                  1


Q ss_pred             c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +  .+++.+.+.|++++|+|+|+.+|+++|+++++++++
T Consensus       237 ~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve  275 (403)
T PRK08526        237 SPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVE  275 (403)
T ss_pred             CHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEee
Confidence            1  134445788999999999999999999999999874

>PRK07476 eutB threonine dehydratase; Provisional

Probab=100.00  E-value=1.5e-54  Score=384.69  Aligned_cols=246  Identities=22%  Similarity=0.304  Sum_probs=220.9

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..++++|...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++.++.+.+.    ..+||++|+||||+
T Consensus         5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~   80 (322)
T PRK07476          5 DIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGR   80 (322)
T ss_pred             HHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHH
Confidence            45678999999999999999999988888899999999999999999999999999998876    23599999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++|+||||+++++.|++.|+.+||+|+.++.  +++++.+.+++++++. +++|++|++||.+ +.|++|
T Consensus        81 alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t  156 (322)
T PRK07476         81 ALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGT  156 (322)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhH
Confidence            99999999999999999999999999999999999999995  4888999999998876 7899999999998 789999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC-------------------
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ-------------------  219 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~-------------------  219 (257)
                      +++||++|++ ++|+||+|+|+||+++|++.+||.+.|+++||+|||.+++++..    +.                   
T Consensus       157 ~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~  235 (322)
T PRK07476        157 IGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIG  235 (322)
T ss_pred             HHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCcccccccccc
Confidence            9999999994 79999999999999999999999999999999999998765421    00                   


Q ss_pred             -cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 -RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 -~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       +.  ++.+.+.+.|+++.|+|+|+.+++++|+++++++++
T Consensus       236 ~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve  276 (322)
T PRK07476        236 LDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVE  276 (322)
T ss_pred             CCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEe
Confidence             11  123455678999999999999999999999998874

>PRK10717 cysteine synthase A; Provisional

Probab=100.00  E-value=1.6e-53  Score=379.53  Aligned_cols=251  Identities=41%  Similarity=0.652  Sum_probs=215.0

Q ss_pred             hhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHH
Q 025113            6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA   85 (257)
Q Consensus         6 ~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA   85 (257)
                      ..++.++..+++|||++++++++..|.+||+|+|++|||||||+|++.+++..+.+.|.+.+| .+|+++|+||||+|+|
T Consensus         2 ~~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA   80 (330)
T PRK10717          2 KIFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLA   80 (330)
T ss_pred             chhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHH
Confidence            357788999999999999999988888999999999999999999999999999999988877 4599999999999999


Q ss_pred             HHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-----C-HHHHHHHHHHHHHhC-CCeEEeCCCCCCcchHh
Q 025113           86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-----R-FEEILEKGEEILKKT-PDGYLLRQFENPANPKI  158 (257)
Q Consensus        86 ~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-----~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  158 (257)
                      ++|+.+|++|+||||..+++.|+++++.+||+|+.+++..     + .+.+.+.++++.++. .+++|++||+||.++..
T Consensus        81 ~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  160 (330)
T PRK10717         81 LVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREA  160 (330)
T ss_pred             HHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHH
Confidence            9999999999999999999999999999999999999631     1 223344455554443 27899999999998778


Q ss_pred             hHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC---CC---cc-----------
Q 025113          159 HYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG---GQ---RG-----------  221 (257)
Q Consensus       159 g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~---~~---~~-----------  221 (257)
                      ||.|+++||++|+++++|+||+|+|+||+++|++.+||++.|+++||+|||.+++....   +.   .+           
T Consensus       161 g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~  240 (330)
T PRK10717        161 HYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGR  240 (330)
T ss_pred             HHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCc
Confidence            99999999999997679999999999999999999999999999999999998743211   00   00           


Q ss_pred             -cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          222 -LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       222 -~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       +..+.....++++.|+|+|+.+++++|+++++++++
T Consensus       241 ~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~ve  277 (330)
T PRK10717        241 ITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLG  277 (330)
T ss_pred             CCcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEe
Confidence             112233457889999999999999999999999874

>TIGR02991 ectoine_eutB ectoine utilization protein EutB

Probab=100.00  E-value=2.7e-54  Score=381.85  Aligned_cols=246  Identities=22%  Similarity=0.300  Sum_probs=219.6

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      +++.+++++...+++|||+++++|+...|.+||+|+|++|||||||||++.+++.++.+...    ..+|+++|+||||+
T Consensus         5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~   80 (317)
T TIGR02991         5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGR   80 (317)
T ss_pred             HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHH
Confidence            56778999999999999999999988788899999999999999999999999998764322    24699999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++++||||+.+++.|++.++.+||+|+.++.  +++++.+.+++++++. +++|++||+||++ +.||+|
T Consensus        81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t  156 (317)
T TIGR02991        81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGT  156 (317)
T ss_pred             HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHH
Confidence            99999999999999999999999999999999999999995  5888888999998876 8899999999998 789999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC-------------------
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ-------------------  219 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~-------------------  219 (257)
                      +++||++|++ ++|+||+|+|+||+++|++++||++.|+++||+|||++++++..    +.                   
T Consensus       157 ~a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~  235 (317)
T TIGR02991       157 LGLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIG  235 (317)
T ss_pred             HHHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccC
Confidence            9999999994 68999999999999999999999999999999999998766531    10                   


Q ss_pred             -cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 -RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 -~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       ++  ++.+.+.+.|+++.|+|+|+.+++++|+++++++|+
T Consensus       236 ~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve  276 (317)
T TIGR02991       236 LDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVE  276 (317)
T ss_pred             CCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEc
Confidence             01  134456778999999999999999999999999875

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.

>PLN02970 serine racemase

Probab=100.00  E-value=3.2e-54  Score=383.23  Aligned_cols=245  Identities=19%  Similarity=0.244  Sum_probs=218.3

Q ss_pred             hhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113            4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG   83 (257)
Q Consensus         4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a   83 (257)
                      +..+++++...+++|||+++++|+...|.+||+|+|++|||||||||++.+++.++.+++.    .++||++|+||||.|
T Consensus        14 i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~a   89 (328)
T PLN02970         14 IREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAA   89 (328)
T ss_pred             HHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHH
Confidence            4556788999999999999999988778899999999999999999999999999876554    356999999999999


Q ss_pred             HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113           84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT  163 (257)
Q Consensus        84 lA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  163 (257)
                      +|++|+.+|++|+||||+++++.|++.|+.+||+|+.++.  +++++.+.+++++++. +++|++||+|+.+ ..||+|+
T Consensus        90 lA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~-~~g~~t~  165 (328)
T PLN02970         90 LALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRV-ISGQGTI  165 (328)
T ss_pred             HHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hhehHHH
Confidence            9999999999999999999999999999999999999995  5888888999998874 8999999999987 6799999


Q ss_pred             HHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC----c-------------c-
Q 025113          164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ----R-------------G-  221 (257)
Q Consensus       164 ~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~----~-------------~-  221 (257)
                      ++||++|++ .||+||+|+|+||+++|++.+||+++|+++||+|||.+++++..    +.    +             + 
T Consensus       166 g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~  244 (328)
T PLN02970        166 ALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGD  244 (328)
T ss_pred             HHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCH
Confidence            999999995 79999999999999999999999999999999999999876532    11    0             0 


Q ss_pred             -cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          222 -LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       222 -~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       .++..+...|+++.|+|+|+.+++++|+++++++++
T Consensus       245 ~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve  281 (328)
T PLN02970        245 LTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVE  281 (328)
T ss_pred             HHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEe
Confidence             123445678999999999999999999999999874

>PRK12483 threonine dehydratase; Reviewed

Probab=100.00  E-value=3.7e-54  Score=399.75  Aligned_cols=242  Identities=25%  Similarity=0.362  Sum_probs=218.3

Q ss_pred             hHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113            8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI   87 (257)
Q Consensus         8 ~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~   87 (257)
                      ..+|...+++|||++++.|++..|.+||+|+|++|||||||+|++.+++..+.+...    ..+||++|+||||+++|++
T Consensus        28 ~~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~a  103 (521)
T PRK12483         28 AARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALA  103 (521)
T ss_pred             HHHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHH
Confidence            347778999999999999998889999999999999999999999999998764432    2459999999999999999


Q ss_pred             HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113           88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI  167 (257)
Q Consensus        88 a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei  167 (257)
                      |+.+|++++||||.+++..|++.++.+||+|+.++.  +++++.+.+++++++. +++|++||+||.+ +.|++|+|+||
T Consensus       104 A~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI  179 (521)
T PRK12483        104 AARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEI  179 (521)
T ss_pred             HHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHH
Confidence            999999999999999999999999999999999984  6999999999999887 7899999999998 88999999999


Q ss_pred             HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------cc--cc
Q 025113          168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------RG--LF  223 (257)
Q Consensus       168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~~--~~  223 (257)
                      ++|++++||+||+|+|+||+++|++.++|.+.|+++||||||++++++..    +.                  ++  .+
T Consensus       180 ~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~  259 (521)
T PRK12483        180 LRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTF  259 (521)
T ss_pred             HHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHH
Confidence            99996569999999999999999999999999999999999999887642    11                  11  24


Q ss_pred             eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          224 IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       224 ~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ++++.+.|++++|+|+|+.+|++.|+++++++++
T Consensus       260 ~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vE  293 (521)
T PRK12483        260 ELCRHYVDEVVTVSTDELCAAIKDIYDDTRSITE  293 (521)
T ss_pred             HHHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEe
Confidence            5567789999999999999999999999999874

>PRK06382 threonine dehydratase; Provisional

Probab=100.00  E-value=2.7e-54  Score=393.64  Aligned_cols=246  Identities=24%  Similarity=0.312  Sum_probs=221.2

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||++++.|+...|.+||+|+|++|||||||+|++.+++..+.+.+.    ..+||++|+||||+
T Consensus        11 ~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~   86 (406)
T PRK06382         11 DILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQ   86 (406)
T ss_pred             HHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHH
Confidence            34567899999999999999999988888899999999999999999999999998876553    24599999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++++||||+++++.|++.++.+||+|+.++.  +++++.+.+++++++. +++|++||+|+.+ +.|++|
T Consensus        87 a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t  162 (406)
T PRK06382         87 GVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGT  162 (406)
T ss_pred             HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHH
Confidence            99999999999999999999999999999999999999985  5899999999998886 8899999999988 789999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CC------------------Cc
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GG------------------QR  220 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~~------------------~~  220 (257)
                      +++||++|++ .||+||+|+|+||+++|++.++|.+.|+++||||||.+++++.    .+                  .|
T Consensus       163 ~~~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~  241 (406)
T PRK06382        163 IGLEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYP  241 (406)
T ss_pred             HHHHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCc
Confidence            9999999994 7999999999999999999999999999999999999998752    11                  01


Q ss_pred             c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +  ++.+.+.+.|+++.|+|+|+.+|+++|+++++++++
T Consensus       242 ~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~e  280 (406)
T PRK06382        242 GDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAE  280 (406)
T ss_pred             cHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceec
Confidence            1  234556789999999999999999999999999874

>PRK08198 threonine dehydratase; Provisional

Probab=100.00  E-value=3.5e-54  Score=393.41  Aligned_cols=246  Identities=26%  Similarity=0.406  Sum_probs=222.1

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++.++.+++.    ..+||++|+||||+
T Consensus         8 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~   83 (404)
T PRK08198          8 DIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQ   83 (404)
T ss_pred             HHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHH
Confidence            44568899999999999999999998888899999999999999999999999999886554    46799999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      ++|++|+.+|++++||||++++..|+++++.+||+|+.++  .+++++.+.+++++++. +++|++||+||.+ +.||+|
T Consensus        84 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~--~~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t  159 (404)
T PRK08198         84 GVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHG--DVYDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGT  159 (404)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHH
Confidence            9999999999999999999999999999999999999998  45999999999998886 8899999999988 789999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------c
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------R  220 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~  220 (257)
                      +|+||++|+ +++|+||+|+|+||+++|++.+||+++|+++||||||.+++++..    +.                  +
T Consensus       160 ~a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~  238 (404)
T PRK08198        160 IGLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRP  238 (404)
T ss_pred             HHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCc
Confidence            999999999 479999999999999999999999999999999999999987631    11                  1


Q ss_pred             c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +  ++.+.+.+.|+++.|+|+|+.+|+++|+++++++++
T Consensus       239 ~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e  277 (404)
T PRK08198        239 GDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVE  277 (404)
T ss_pred             CHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEe
Confidence            1  123456788999999999999999999999998864

>PRK08638 threonine dehydratase; Validated

Probab=100.00  E-value=4.1e-54  Score=382.61  Aligned_cols=245  Identities=25%  Similarity=0.373  Sum_probs=218.0

Q ss_pred             hhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113            4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG   83 (257)
Q Consensus         4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a   83 (257)
                      +..+++++...+++|||++++.|++..+.+||+|+|++|||||||||++.+++.++.+...    ..+|+++|+||||.|
T Consensus        14 i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~a   89 (333)
T PRK08638         14 IIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQG   89 (333)
T ss_pred             HHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHH
Confidence            4567899999999999999999988788899999999999999999999999998765332    246999999999999


Q ss_pred             HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113           84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT  163 (257)
Q Consensus        84 lA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  163 (257)
                      +|++|+.+|++|+||||++.++.|+++++.+||+|+.+++  +++++.+.+++++++. +++|++||+||.+ ..||.|+
T Consensus        90 lA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~  165 (333)
T PRK08638         90 VALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTI  165 (333)
T ss_pred             HHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHH
Confidence            9999999999999999999999999999999999999984  5899999999998887 7899999999998 7899999


Q ss_pred             HHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCC------------------cc
Q 025113          164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQ------------------RG  221 (257)
Q Consensus       164 ~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~~~------------------~~  221 (257)
                      ++||++|+ +++|+||+|+|+||+++|++.+||++.|+++||+|||.+++++.    .+.                  |.
T Consensus       166 a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~p~  244 (333)
T PRK08638        166 GLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPG  244 (333)
T ss_pred             HHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCCcc
Confidence            99999999 57999999999999999999999999999999999999986543    111                  11


Q ss_pred             c--ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          222 L--FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       222 ~--~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .  +++.+.+.|+++.|+|+|+.+++++|+++++++++
T Consensus       245 ~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e  282 (333)
T PRK08638        245 NLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTE  282 (333)
T ss_pred             HHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeec
Confidence            1  12335678999999999999999999999998764

>PRK06110 hypothetical protein; Provisional

Probab=100.00  E-value=8.4e-54  Score=379.87  Aligned_cols=246  Identities=21%  Similarity=0.226  Sum_probs=218.7

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..++++++..+++|||++++.|++.+|.+||+|+|++|||||||+|++.+++.++.+++...   ..|+++|+||||+
T Consensus         7 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~   83 (322)
T PRK06110          7 ELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQ   83 (322)
T ss_pred             HHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHH
Confidence            3466789999999999999999999888889999999999999999999999999998876432   4589999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+++|++++||||.++++.|+++++.+||+|+.++  .+++++.+.+++++++. +++|++|| ||.+ +.||.|
T Consensus        84 alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~--~~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t  158 (322)
T PRK06110         84 SVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHG--EDFQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVAT  158 (322)
T ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEEcCCC-CChH-Hhccch
Confidence            9999999999999999999999999999999999999997  45899999999998886 78999998 5666 689999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----C------------------Cc
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----G------------------QR  220 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~------------------~~  220 (257)
                      +++||++|++ ++|+||+|+|+||+++|++.++++.+|++|||+|||.+++++..    +                  .+
T Consensus       159 ~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~  237 (322)
T PRK06110        159 YALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTP  237 (322)
T ss_pred             HHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCc
Confidence            9999999995 79999999999999999999999999999999999999876531    1                  01


Q ss_pred             c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .  .+++++.+.|+++.|+|+|+.+++++|+++++++++
T Consensus       238 ~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e  276 (322)
T PRK06110        238 DPEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAE  276 (322)
T ss_pred             cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEe
Confidence            1  134456789999999999999999999999998864

>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

Probab=100.00  E-value=1.4e-52  Score=367.46  Aligned_cols=241  Identities=51%  Similarity=0.792  Sum_probs=213.9

Q ss_pred             CCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcE
Q 025113           16 GNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNL   95 (257)
Q Consensus        16 ~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~   95 (257)
                      |+|||++++.|+...|.+||+|+|++|||||||+|++.+++..+.++|.+++| .+|+++|+||||+|+|++|+++|++|
T Consensus         1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~   79 (291)
T cd01561           1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF   79 (291)
T ss_pred             CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence            68999999999988889999999999999999999999999999999887665 45999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCC
Q 025113           96 IIVMPSTCSMERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG  173 (257)
Q Consensus        96 ~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~  173 (257)
                      +||||..+++.|+++++.+||+|+.++...  +.+++.+.+++++++.++++|++||+||.++..|++|+++||++|+++
T Consensus        80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~  159 (291)
T cd01561          80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG  159 (291)
T ss_pred             EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999642  347888889998887668999999999999554556999999999966


Q ss_pred             CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCc------------ccceeccccCCeEEEeChHHH
Q 025113          174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR------------GLFIFISYLFRSFVLVDDGAV  241 (257)
Q Consensus       174 ~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~------------~~~~i~~~~~~~~v~v~d~e~  241 (257)
                      .||+||+|+|+||+++|++.+|+.+.|+++||+|||.+++++.+...            .++.+...+.++++.|+|+|+
T Consensus       160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~  239 (291)
T cd01561         160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA  239 (291)
T ss_pred             CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHH
Confidence            79999999999999999999999999999999999999877732111            122344456889999999999


Q ss_pred             HHHHHHHHhhcCeecC
Q 025113          242 VHLHNYLLLHIFTLVC  257 (257)
Q Consensus       242 ~~a~~~l~~~~~~~v~  257 (257)
                      .+|+++|+++++++++
T Consensus       240 ~~a~~~l~~~~gi~~e  255 (291)
T cd01561         240 FAMARRLAREEGLLVG  255 (291)
T ss_pred             HHHHHHHHHHhCeeEc
Confidence            9999999999999874

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.

>PRK07048 serine/threonine dehydratase; Validated

Probab=100.00  E-value=2.7e-53  Score=376.63  Aligned_cols=246  Identities=23%  Similarity=0.324  Sum_probs=218.9

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||+++++++...|.+||+|+|++|||||||||++.+++.++.+.+.    ..+||++|+||||+
T Consensus        10 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~   85 (321)
T PRK07048         10 DVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQ   85 (321)
T ss_pred             HHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHH
Confidence            45678899999999999999999887778899999999999999999999999999875432    35699999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|+++++|||.++++.|+++++.+||+|+.++.  +++++.+.+++++++. +++|++||+|+.+ +.|++|
T Consensus        86 alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t  161 (321)
T PRK07048         86 AIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGT  161 (321)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccch
Confidence            99999999999999999999999999999999999999995  4788888899998886 7899999999988 789999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc-----CC-----C----------c--
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN-----GG-----Q----------R--  220 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~-----~~-----~----------~--  220 (257)
                      +++||++|++ +||+||+|+|+||+++|++.++|++.|+++||+|||.+++++.     +.     .          +  
T Consensus       162 ~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~  240 (321)
T PRK07048        162 AAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHL  240 (321)
T ss_pred             HHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCc
Confidence            9999999995 8999999999999999999999999999999999999987531     10     0          0  


Q ss_pred             --ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 --GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 --~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                        ..+++...+.|+++.|+|+|+.+++++|+++++++++
T Consensus       241 ~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e  279 (321)
T PRK07048        241 GNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVE  279 (321)
T ss_pred             cHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceec
Confidence              0123445678999999999999999999999999875

>TIGR02079 THD1 threonine dehydratase

Probab=100.00  E-value=2.1e-53  Score=387.65  Aligned_cols=247  Identities=24%  Similarity=0.361  Sum_probs=218.1

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||++++.|++..|.+||+|+|++|||||||+|++.+++.++.+...    ..+||++|+||||+
T Consensus         2 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~   77 (409)
T TIGR02079         2 DIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQ   77 (409)
T ss_pred             hHHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence            45678899999999999999999998888999999999999999999999999987543322    24699999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE---EEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI---ILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH  159 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  159 (257)
                      ++|++|+.+|++++||||+++++.|+..++.+||+|   +.++  .+++++.+.+++++++. +++|++||+||.+ +.|
T Consensus        78 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g  153 (409)
T TIGR02079        78 GFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEG  153 (409)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhh
Confidence            999999999999999999999999999999999974   3444  46999999999998886 7899999999988 789


Q ss_pred             HhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC----------------
Q 025113          160 YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ----------------  219 (257)
Q Consensus       160 ~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~----------------  219 (257)
                      ++|+++||++|++++||+||+|+|+||+++|++.++|+++|+++||||||.+++++..    +.                
T Consensus       154 ~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v  233 (409)
T TIGR02079       154 QGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAV  233 (409)
T ss_pred             hHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccC
Confidence            9999999999996569999999999999999999999999999999999999987642    11                


Q ss_pred             --cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 --RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 --~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                        ++  .+++++.+.|+++.|+|+|+.+|+++|+++++++++
T Consensus       234 ~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve  275 (409)
T TIGR02079       234 KRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAE  275 (409)
T ss_pred             CCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceec
Confidence              11  123456778999999999999999999999999874

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PLN02550 threonine dehydratase

Probab=100.00  E-value=2e-53  Score=397.15  Aligned_cols=240  Identities=23%  Similarity=0.360  Sum_probs=216.8

Q ss_pred             hhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA   89 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~   89 (257)
                      ++...+++|||++++.|+..+|.+||+|+|++|||||||+|++.+.+.++.+...    ..+||++|+||||+++|++|+
T Consensus       102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~----~~GVV~aSaGNhAqgvA~aA~  177 (591)
T PLN02550        102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL----DKGVICSSAGNHAQGVALSAQ  177 (591)
T ss_pred             hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC----CCCEEEECCCHHHHHHHHHHH
Confidence            5668899999999999998889999999999999999999999999998865432    245999999999999999999


Q ss_pred             HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHh
Q 025113           90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ  169 (257)
Q Consensus        90 ~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~  169 (257)
                      ++|++++||||.+++..|++.++.+||+|+.++  .+++++.+.+++++++. +++|++||+||.+ ++|++|+|+||++
T Consensus       178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g--~~~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~e  253 (591)
T PLN02550        178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVG--DSYDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVR  253 (591)
T ss_pred             HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeC--CCHHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999998  45999999999998886 7899999999998 7899999999999


Q ss_pred             hhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------c--cccee
Q 025113          170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------R--GLFIF  225 (257)
Q Consensus       170 ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~--~~~~i  225 (257)
                      |+++.+|+||+|+|+||+++|++.++|+++|++|||||||.+++++..    +.                  +  ..+++
T Consensus       254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i  333 (591)
T PLN02550        254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL  333 (591)
T ss_pred             HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence            996569999999999999999999999999999999999999887631    11                  1  12456


Q ss_pred             ccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          226 ISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       226 ~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ++.+.|++++|+|+||.+|++.|+++++++++
T Consensus       334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvE  365 (591)
T PLN02550        334 CRELVDGVVLVSRDAICASIKDMFEEKRSILE  365 (591)
T ss_pred             HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEe
Confidence            68899999999999999999999999999874

>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia

Probab=100.00  E-value=2.1e-53  Score=384.19  Aligned_cols=240  Identities=19%  Similarity=0.240  Sum_probs=210.4

Q ss_pred             cCCCCceecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCc-----------
Q 025113           15 IGNTPMVYLNNVVDGCV--------ARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK-----------   69 (257)
Q Consensus        15 ~~~TPl~~~~~l~~~~~--------~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~-----------   69 (257)
                      +++|||++++.|+...|        .+||+|+|++|| |||||||++.+++..     +.+.|.+.||.           
T Consensus        50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~  129 (404)
T cd06447          50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR  129 (404)
T ss_pred             ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence            99999999999886543        699999999999 999999999999864     78889988875           


Q ss_pred             -----eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCe
Q 025113           70 -----TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG  144 (257)
Q Consensus        70 -----~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (257)
                           .+||++|+||||+|+|++|+.+|++++||||.++++.|++.|+.+||+|+.+++  +++++.+.+++++++.+++
T Consensus       130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~  207 (404)
T cd06447         130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMC  207 (404)
T ss_pred             hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCe
Confidence                 479999999999999999999999999999999999999999999999999984  5899999999999887678


Q ss_pred             EEeCCCCCCcchHhhHhhHHHHHHhhhCC---C-----CCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCccc
Q 025113          145 YLLRQFENPANPKIHYETTGPEIWQDSGG---K-----VDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESAVL  215 (257)
Q Consensus       145 ~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~---~-----~d~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~~  215 (257)
                      +|++|++++. .++||+|+|+||++|+++   +     ||+||+|+|+||+++|++++||++ .|+++||+|||.+++++
T Consensus       208 ~~v~~~n~~~-~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~  286 (404)
T cd06447         208 YFVDDENSRD-LFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM  286 (404)
T ss_pred             EeCCCCCchh-HHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence            8999965554 489999999999999952   3     458999999999999999999997 78999999999998765


Q ss_pred             cC----CC------------------------c--ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          216 NG----GQ------------------------R--GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       216 ~~----~~------------------------~--~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ..    +.                        +  ..+++++.+.|++++|+|+|+.+++++|+++++++++
T Consensus       287 ~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~ve  358 (404)
T cd06447         287 LLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVE  358 (404)
T ss_pred             HHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEe
Confidence            11    10                        0  1234556789999999999999999999999999874

D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.

>PLN02356 phosphateglycerate kinase

Probab=100.00  E-value=2e-52  Score=377.75  Aligned_cols=249  Identities=34%  Similarity=0.565  Sum_probs=209.5

Q ss_pred             hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113            7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF   86 (257)
Q Consensus         7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~   86 (257)
                      .+..+...+++|||++++.|+...|.+||+|+|++|||||||||++.+++.+|.++|.+.|+. .|+++||||||.|+|+
T Consensus        43 ~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g-~VveaSSGN~g~alA~  121 (423)
T PLN02356         43 PRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGG-VVTEGSAGSTAISLAT  121 (423)
T ss_pred             hhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCC-EEEEeCCHHHHHHHHH
Confidence            345677889999999999998888889999999999999999999999999999999887764 4788999999999999


Q ss_pred             HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC-----CCCHH-HHH---HHHHHHHHh-----------------
Q 025113           87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS-----ALRFE-EIL---EKGEEILKK-----------------  140 (257)
Q Consensus        87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~-----~~~~~-~~~---~~~~~~~~~-----------------  140 (257)
                      +|+.+|++++||||+++++.|++.|+.+||+|+.+++     ..++. .+.   ..+++++++                 
T Consensus       122 ~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~  201 (423)
T PLN02356        122 VAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNG  201 (423)
T ss_pred             HHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence            9999999999999999999999999999999999964     12231 111   224444433                 


Q ss_pred             ---------------CCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEE
Q 025113          141 ---------------TPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVY  205 (257)
Q Consensus       141 ---------------~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vi  205 (257)
                                     .++.+|++||+|+.|+..|+..+|+||++|+++++|+||+|+||||+++|+++++|+++|+++||
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVi  281 (423)
T PLN02356        202 CISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCF  281 (423)
T ss_pred             ccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEE
Confidence                           14778999999999988877767999999997689999999999999999999999999999999


Q ss_pred             EEeCCCCccccC-------------CC----c------------ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          206 GVEPSESAVLNG-------------GQ----R------------GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       206 gv~~~~~~~~~~-------------~~----~------------~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                      +|||.++..+..             +.    +            -++.+.....|+++.|+|+|+.+++++|+++++++|
T Consensus       282 gVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~v  361 (423)
T PLN02356        282 LIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFV  361 (423)
T ss_pred             EEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeE
Confidence            999998753210             10    0            012233456899999999999999999999999987

>PRK08639 threonine dehydratase; Validated

Probab=100.00  E-value=2.5e-53  Score=388.74  Aligned_cols=249  Identities=24%  Similarity=0.359  Sum_probs=218.0

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||++++.|++..|.+||+|+|++|||||||+|++.+++.++.+...    ..+||++|+||||+
T Consensus        11 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~   86 (420)
T PRK08639         11 DIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQ   86 (420)
T ss_pred             HHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence            45568899999999999999999988888899999999999999999999999988543221    25699999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD-SALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE  161 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  161 (257)
                      ++|++|+.+|++++||||+++++.|++.++.+||+|+.+. ...+++++.+.+.+++++. +++|++||+||.+ +.|++
T Consensus        87 alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~  164 (420)
T PRK08639         87 GVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQG  164 (420)
T ss_pred             HHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchh
Confidence            9999999999999999999999999999999999754322 1246999999999998886 7999999999988 78999


Q ss_pred             hHHHHHHhhhCCC--CCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC----------------
Q 025113          162 TTGPEIWQDSGGK--VDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ----------------  219 (257)
Q Consensus       162 t~~~Ei~~ql~~~--~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~----------------  219 (257)
                      |+|+||++|+++.  ||+||+|+|+||+++|++.++|++.|+++||||||.+++++..    +.                
T Consensus       165 tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v  244 (420)
T PRK08639        165 TVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAV  244 (420)
T ss_pred             HHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeeccccc
Confidence            9999999999655  9999999999999999999999999999999999999887631    11                


Q ss_pred             --cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 --RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 --~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                        ++  .+++++.+.|+++.|+|+|+.+|+++|+++++++++
T Consensus       245 ~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e  286 (420)
T PRK08639        245 ARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAE  286 (420)
T ss_pred             CCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceec
Confidence              11  234556788999999999999999999999999874

>PRK08813 threonine dehydratase; Provisional

Probab=100.00  E-value=1.2e-52  Score=372.93  Aligned_cols=236  Identities=22%  Similarity=0.275  Sum_probs=210.7

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..++++++..+.+|||++++.+      +||+|+|++|||||||+|++.+++.++.+.+..    +.||++|+||||+
T Consensus        25 ~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~   94 (349)
T PRK08813         25 DVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDE----RPVICASAGNHAQ   94 (349)
T ss_pred             HHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC----CeEEEECCCHHHH
Confidence            456688999999999999999865      499999999999999999999999999998862    4599999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++++||||.++++.|++.++.+||+|+.+++  +|+++.+.+++++++. +++|++||+||++ ++||+|
T Consensus        95 alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~T  170 (349)
T PRK08813         95 GVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGT  170 (349)
T ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHH
Confidence            99999999999999999999999999999999999999984  5999999999999886 8999999999998 789999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CC-----------------Cc-
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GG-----------------QR-  220 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~~-----------------~~-  220 (257)
                      +|+||++|.   ||+||+|+|+||+++|++.++|+  ++++||||||++++++.    +.                 .+ 
T Consensus       171 ig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~  245 (349)
T PRK08813        171 VGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPG  245 (349)
T ss_pred             HHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcc
Confidence            999999873   79999999999999999999996  46999999999987642    11                 01 


Q ss_pred             -ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 -GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 -~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       ..+.+.+.+.|+++.|+|+|+.+|+++|+++++++|+
T Consensus       246 ~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE  283 (349)
T PRK08813        246 FLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAE  283 (349)
T ss_pred             hhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEE
Confidence             1134456778999999999999999999999999874

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=100.00  E-value=7.2e-53  Score=391.13  Aligned_cols=242  Identities=26%  Similarity=0.368  Sum_probs=218.6

Q ss_pred             hHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113            8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI   87 (257)
Q Consensus         8 ~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~   87 (257)
                      ..++...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++..+.+...    ..+||++|+||||+++|++
T Consensus         8 ~~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~a   83 (499)
T TIGR01124         8 TARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFS   83 (499)
T ss_pred             HhHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHH
Confidence            347888999999999999998888899999999999999999999999998754432    3569999999999999999


Q ss_pred             HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113           88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI  167 (257)
Q Consensus        88 a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei  167 (257)
                      |+.+|++++||||.+++..|++.++.+||+|+.++  .+++++.+.+++++++. +++|++||+||.+ ++|++|+|.||
T Consensus        84 a~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g--~~~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI  159 (499)
T TIGR01124        84 AARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHG--ANFDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEI  159 (499)
T ss_pred             HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeC--cCHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHH
Confidence            99999999999999999999999999999999998  45999999999998886 7899999999998 89999999999


Q ss_pred             HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------c--ccc
Q 025113          168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------R--GLF  223 (257)
Q Consensus       168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~--~~~  223 (257)
                      ++|+++++|+||+|+|+||+++|++.++|...|+++||||||.+++++..    +.                  +  ..+
T Consensus       160 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~  239 (499)
T TIGR01124       160 LRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETF  239 (499)
T ss_pred             HHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHH
Confidence            99996579999999999999999999999999999999999999887632    11                  1  124


Q ss_pred             eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          224 IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       224 ~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ++++.+.|++++|+|+|+.+|++.|+++++++++
T Consensus       240 ~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~E  273 (499)
T TIGR01124       240 RLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAE  273 (499)
T ss_pred             HHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEe
Confidence            5677889999999999999999999999999874

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>PRK07334 threonine dehydratase; Provisional

Probab=100.00  E-value=5.8e-53  Score=384.74  Aligned_cols=246  Identities=22%  Similarity=0.299  Sum_probs=219.9

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||++++.|+..+|.+||+|+|++|||||||||++.+++.++.+...    ..+||++|+||||+
T Consensus         9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~   84 (403)
T PRK07334          9 DIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQ   84 (403)
T ss_pred             HHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHH
Confidence            45678899999999999999999988788899999999999999999999999998765432    24599999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++++||||..+++.|+++++.+||+|+.+++  +++++.+.+++++++. +++|++||+||.+ +.||.|
T Consensus        85 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t  160 (403)
T PRK07334         85 GVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGT  160 (403)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHH
Confidence            99999999999999999999999999999999999999984  5899999999998875 8899999999998 799999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC----------------cc-
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ----------------RG-  221 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~----------------~~-  221 (257)
                      +++||++|+ +.+|+||+|+|+||+++|++.++|.+.|+++||+|||++++++..    +.                ++ 
T Consensus       161 ~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~  239 (403)
T PRK07334        161 VALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQ  239 (403)
T ss_pred             HHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccH
Confidence            999999999 479999999999999999999999999999999999999887642    10                11 


Q ss_pred             -cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          222 -LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       222 -~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       ++.+.+.+.|+++.|+|+|+.++++.|+++++++|+
T Consensus       240 ~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~  276 (403)
T PRK07334        240 LTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVE  276 (403)
T ss_pred             HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEe
Confidence             123456678999999999999999999999999874

>PRK06815 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-52  Score=371.93  Aligned_cols=246  Identities=21%  Similarity=0.261  Sum_probs=218.1

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||++++.|+...|.+||+|+|++|||||||||++.+++.++.+...    ..+||++|+||||+
T Consensus         6 ~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~   81 (317)
T PRK06815          6 AILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQ   81 (317)
T ss_pred             HHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHH
Confidence            45678899999999999999999988788899999999999999999999999987654322    24699999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++|+||||..+++.|+..++.+||+|+.+++  +++++...+++++++. +++|++||+||.+ +.||+|
T Consensus        82 alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t  157 (317)
T PRK06815         82 GVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGT  157 (317)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhH
Confidence            99999999999999999999999999999999999999996  4888888899988876 8899999999987 689999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC-------------------
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ-------------------  219 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~-------------------  219 (257)
                      +++||++|++ +||+||+|+|+||+++|++.+++++.|+++||||||.+++++..    +.                   
T Consensus       158 ~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~  236 (317)
T PRK06815        158 IGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVE  236 (317)
T ss_pred             HHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCc
Confidence            9999999995 69999999999999999999999999999999999999887632    10                   


Q ss_pred             cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 ~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.  .+++.+.+.++++.|+|+|+.+++++|+++++++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~ve  276 (317)
T PRK06815        237 PGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIE  276 (317)
T ss_pred             ccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEe
Confidence            00  112345678999999999999999999999999875

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=100.00  E-value=1.9e-52  Score=369.94  Aligned_cols=237  Identities=24%  Similarity=0.279  Sum_probs=209.1

Q ss_pred             CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEE
Q 025113           17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLI   96 (257)
Q Consensus        17 ~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~   96 (257)
                      +|||++++++++..+.+||+|+|++|||||||||++.+++.++.++|. .+ .++||++|+||||+|+|++|+.+|++|+
T Consensus         1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~   78 (316)
T cd06448           1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT   78 (316)
T ss_pred             CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence            699999999988778899999999999999999999999999999885 22 3579999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCC--C
Q 025113           97 IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG--K  174 (257)
Q Consensus        97 i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~--~  174 (257)
                      ||||.++++.|++.|+.+||+|+.++++ .++++.+.+++++++.++++|++||+||.+ +.||.|+++||++|+++  .
T Consensus        79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~  156 (316)
T cd06448          79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEK  156 (316)
T ss_pred             EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCC
Confidence            9999999999999999999999999853 267777778888777658899999999998 78889999999999975  5


Q ss_pred             CCEEEEecCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCccccC----CC----------------c--c--cceecccc
Q 025113          175 VDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSESAVLNG----GQ----------------R--G--LFIFISYL  229 (257)
Q Consensus       175 ~d~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigv~~~~~~~~~~----~~----------------~--~--~~~i~~~~  229 (257)
                      ||+||+|+|+||+++|++.+|++++ ++++||+|||.+++++.+    +.                +  +  .+++.+..
T Consensus       157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~  236 (316)
T cd06448         157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH  236 (316)
T ss_pred             CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence            9999999999999999999999996 999999999999877632    10                0  0  12344556


Q ss_pred             CCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          230 FRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       230 ~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .++++.|+|+|+.+++++|+++++++++
T Consensus       237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~  264 (316)
T cd06448         237 NIKSEVVSDRDAVQACLRFADDERILVE  264 (316)
T ss_pred             CCeEEEECHHHHHHHHHHHHHHcCceec
Confidence            7899999999999999999999999874

>PRK02991 D-serine dehydratase; Provisional

Probab=100.00  E-value=3.2e-52  Score=380.60  Aligned_cols=240  Identities=18%  Similarity=0.241  Sum_probs=210.7

Q ss_pred             cCCCCceecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCc-----------
Q 025113           15 IGNTPMVYLNNVVDGCV--------ARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK-----------   69 (257)
Q Consensus        15 ~~~TPl~~~~~l~~~~~--------~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~-----------   69 (257)
                      +++|||++++.+++..|        .+||+|+|++|| |||||+|++.+++..     +.+.|.+.|+.           
T Consensus        73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~  152 (441)
T PRK02991         73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR  152 (441)
T ss_pred             ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence            89999999999886554        699999999999 999999999999875     55778777663           


Q ss_pred             -----eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCe
Q 025113           70 -----TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG  144 (257)
Q Consensus        70 -----~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (257)
                           .+||++|+||||+|+|++|+.+|++++||||+++++.|++.++.+||+|+.+++  +|+++.+.+++++++.+++
T Consensus       153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~  230 (441)
T PRK02991        153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNC  230 (441)
T ss_pred             hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCe
Confidence                 469999999999999999999999999999999999999999999999999994  5999999999998887678


Q ss_pred             EEeCCCCCCcchHhhHhhHHHHHHhhhCC--------CCCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCccc
Q 025113          145 YLLRQFENPANPKIHYETTGPEIWQDSGG--------KVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESAVL  215 (257)
Q Consensus       145 ~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~--------~~d~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~~  215 (257)
                      +|+++++++.. +.||+|+++||++|+++        .||+||+|+|+||+++|++.++|++ .|+++||+|||.+++++
T Consensus       231 ~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~  309 (441)
T PRK02991        231 YFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCM  309 (441)
T ss_pred             EeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHH
Confidence            99999877766 89999999999999952        2679999999999999999999997 68899999999998765


Q ss_pred             cC----CC------------------------cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          216 NG----GQ------------------------RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       216 ~~----~~------------------------~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ..    +.                        ++  .+++++.+.|+++.|+|+|+.+|++.|+++++++|.
T Consensus       310 ~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vE  381 (441)
T PRK02991        310 LLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLE  381 (441)
T ss_pred             HHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceee
Confidence            21    11                        01  135567789999999999999999999999999873

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=100.00  E-value=1.9e-52  Score=379.19  Aligned_cols=231  Identities=26%  Similarity=0.384  Sum_probs=210.2

Q ss_pred             CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEE
Q 025113           18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII   97 (257)
Q Consensus        18 TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i   97 (257)
                      |||+++++|+...|.+||+|+|++|||||||+|++.+++.++.++++.    .+||++|+||||+|+|++|+.+|++++|
T Consensus         1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~i   76 (380)
T TIGR01127         1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVI   76 (380)
T ss_pred             CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            899999999988889999999999999999999999999999988752    4699999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCCCCE
Q 025113           98 VMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDA  177 (257)
Q Consensus        98 ~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~  177 (257)
                      |||+++++.|++.++.+||+|+.++.  +++++.+.+++++++. +++|++||+|+.+ +.||+|+++||++|++ +||+
T Consensus        77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~~-~~D~  151 (380)
T TIGR01127        77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDIP-DVDT  151 (380)
T ss_pred             EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhCC-CCCE
Confidence            99999999999999999999999984  5999999999998886 8899999999988 7999999999999994 7999


Q ss_pred             EEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------cc--cceeccccCCeE
Q 025113          178 FISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------RG--LFIFISYLFRSF  233 (257)
Q Consensus       178 iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~~--~~~i~~~~~~~~  233 (257)
                      ||+|+|+||+++|++.++|++.|++|||||||.+++++..    +.                  ++  .+.+.+.+.|++
T Consensus       152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~  231 (380)
T TIGR01127       152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV  231 (380)
T ss_pred             EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence            9999999999999999999999999999999999877531    11                  11  124556789999


Q ss_pred             EEeChHHHHHHHHHHHhhcCeecC
Q 025113          234 VLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       234 v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.|+|+|+.+|+++|+++++++++
T Consensus       232 v~V~d~e~~~a~~~l~~~~gi~~e  255 (380)
T TIGR01127       232 VTVDEEEIANAIYLLLERHKILAE  255 (380)
T ss_pred             EEECHHHHHHHHHHHHHhcCeEec
Confidence            999999999999999999998864

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK08246 threonine dehydratase; Provisional

Probab=100.00  E-value=4.1e-52  Score=367.01  Aligned_cols=240  Identities=26%  Similarity=0.386  Sum_probs=213.3

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||++++.++.. +.+||+|+|++|||||||||++.+++.++.+ +     .++||++|+||||+
T Consensus         9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~   81 (310)
T PRK08246          9 DVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGL   81 (310)
T ss_pred             HHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHH
Confidence            456788999999999999999998876 7899999999999999999999999988765 2     25799999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++|+||||+.+++.|+.+++.+||+|+.++.  +++++++.+++++++. +++|++||+||.+ +.||+|
T Consensus        82 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t  157 (310)
T PRK08246         82 AVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGT  157 (310)
T ss_pred             HHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHH
Confidence            99999999999999999999999999999999999999985  5888999999988876 8899999999998 789999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CCc------------------
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQR------------------  220 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~~------------------  220 (257)
                      +++||++|+ +.||+||+|+|+||+++|++.+++.   +++||+|||.+++++..    +.+                  
T Consensus       158 ~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~  233 (310)
T PRK08246        158 LGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRV  233 (310)
T ss_pred             HHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCc
Confidence            999999999 4799999999999999999999965   48999999999877632    110                  


Q ss_pred             c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +  ++.+.+.+.|+++.|+|+|+.+|+++|+++++++++
T Consensus       234 ~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e  272 (310)
T PRK08246        234 GEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVE  272 (310)
T ss_pred             cHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceee
Confidence            0  233556788999999999999999999999999874

>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase

Probab=100.00  E-value=5e-52  Score=377.97  Aligned_cols=241  Identities=20%  Similarity=0.259  Sum_probs=211.6

Q ss_pred             ccCCCCceecccccCCC--------CceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCc----------
Q 025113           14 LIGNTPMVYLNNVVDGC--------VARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------   69 (257)
Q Consensus        14 ~~~~TPl~~~~~l~~~~--------~~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------   69 (257)
                      ++++|||++++.+++.+        +.+||+|+|++|| |||||+|++.+++..     +.+.|.+.++.          
T Consensus        67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~  146 (431)
T TIGR02035        67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF  146 (431)
T ss_pred             CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence            99999999999987633        4699999999999 999999999999874     77889888774          


Q ss_pred             ------eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCC
Q 025113           70 ------TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPD  143 (257)
Q Consensus        70 ------~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~  143 (257)
                            .+||++|+||||+|+|++|+.+|++++||||+++++.|++.++.+||+|+.+++  +|+++.+.+++++++.++
T Consensus       147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~  224 (431)
T TIGR02035       147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM  224 (431)
T ss_pred             hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence                  479999999999999999999999999999999999999999999999999995  599999999999988767


Q ss_pred             eEEeCCCCCCcchHhhHhhHHHHHHhhhCC--------CCCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCcc
Q 025113          144 GYLLRQFENPANPKIHYETTGPEIWQDSGG--------KVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESAV  214 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~--------~~d~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~  214 (257)
                      ++|+++ .|+.++++||+|+++||++|+++        .||+|++|+|+||+++|++.++|++ .|+++||+|||.++++
T Consensus       225 ~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~  303 (431)
T TIGR02035       225 CYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC  303 (431)
T ss_pred             eEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence            788887 45566689999999999999952        4779999999999999999999997 8899999999999876


Q ss_pred             cc----CCC------------------------cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          215 LN----GGQ------------------------RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       215 ~~----~~~------------------------~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.    .+.                        ++  .+.+++.+.|++++|+|+|+.+++++|+++++++|.
T Consensus       304 ~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vE  376 (431)
T TIGR02035       304 MLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLE  376 (431)
T ss_pred             HHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEc
Confidence            41    110                        11  123456688999999999999999999999999873

This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.

>PRK09224 threonine dehydratase; Reviewed

Probab=100.00  E-value=4.7e-52  Score=387.00  Aligned_cols=242  Identities=26%  Similarity=0.388  Sum_probs=218.2

Q ss_pred             hHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113            8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI   87 (257)
Q Consensus         8 ~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~   87 (257)
                      ..++...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++..+.+...    ..+||++|+||||+++|++
T Consensus        11 ~~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~a   86 (504)
T PRK09224         11 TARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALS   86 (504)
T ss_pred             HHHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHH
Confidence            457888999999999999998888999999999999999999999999998764322    3569999999999999999


Q ss_pred             HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113           88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI  167 (257)
Q Consensus        88 a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei  167 (257)
                      |+.+|++++||||.+++..|++.++.+||+|+.++.  +++++.+.+.+++++. +++|++||+||.+ +.|++|++.||
T Consensus        87 a~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI  162 (504)
T PRK09224         87 AARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEI  162 (504)
T ss_pred             HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHH
Confidence            999999999999999999999999999999999984  6999999999998885 8899999999998 78999999999


Q ss_pred             HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------cc--cc
Q 025113          168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------RG--LF  223 (257)
Q Consensus       168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~~--~~  223 (257)
                      ++|+++.||+||+|+||||+++|++.++|.+.|+++||||||.+++++..    +.                  ++  .+
T Consensus       163 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~  242 (504)
T PRK09224        163 LQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETF  242 (504)
T ss_pred             HHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHH
Confidence            99996559999999999999999999999999999999999999887632    11                  11  24


Q ss_pred             eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          224 IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       224 ~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ++++.+.|++++|+|+|+.+|++.|+++++++++
T Consensus       243 ~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~e  276 (504)
T PRK09224        243 RLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAE  276 (504)
T ss_pred             HHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEc
Confidence            5667889999999999999999999999999874

>PRK06608 threonine dehydratase; Provisional

Probab=100.00  E-value=5e-52  Score=369.92  Aligned_cols=245  Identities=19%  Similarity=0.252  Sum_probs=215.3

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||++++.|++..|++||+|+|++|||||||+|++.+++.++.++|.+.   ++||++|+||||+
T Consensus         9 ~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~   85 (338)
T PRK06608          9 NIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQ   85 (338)
T ss_pred             HHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHH
Confidence            4567889999999999999999999888889999999999999999999999999999988642   4699999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++++||||.++++.|+++++.+||+|+.++.   .+++.+.+++ +++ +++||++||+|+.+ +.|++|
T Consensus        86 alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t  159 (338)
T PRK06608         86 AVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGT  159 (338)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHH
Confidence            99999999999999999999999999999999999999974   4677777777 444 48899999999988 689999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCC------c-----------c
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQ------R-----------G  221 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~~~------~-----------~  221 (257)
                      +++||++|++++||+||+|+|+||+++|++.++|...++++||+|||.+++++.    .+.      +           .
T Consensus       160 ~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~  239 (338)
T PRK06608        160 LCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLS  239 (338)
T ss_pred             HHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCC
Confidence            999999999768999999999999999999999999999999999999986542    111      0           0


Q ss_pred             ----cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          222 ----LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       222 ----~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                          .+++++. .|+++.|+|+|+.++++.|+++++++++
T Consensus       240 ~~~~~~~~~~~-~d~~v~Vsd~e~~~a~~~l~~~~gi~ve  278 (338)
T PRK06608        240 VSARTFEYLKK-LDDFYLVEEYEIYYWTAWLTHLLKVICE  278 (338)
T ss_pred             CCHHHHHHHHh-CCCEEEECHHHHHHHHHHHHHHcCcEEc
Confidence                0222233 5889999999999999999999999874

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=100.00  E-value=5.2e-52  Score=365.94  Aligned_cols=247  Identities=25%  Similarity=0.356  Sum_probs=221.8

Q ss_pred             CchhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHH
Q 025113            2 EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG   81 (257)
Q Consensus         2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~   81 (257)
                      ++++.+++.|...+++|||+++++|+..+|.+||+|+|++|||||||||++.+++.++.+.+.    ..+||++|+||||
T Consensus         2 ~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g   77 (304)
T cd01562           2 EDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHA   77 (304)
T ss_pred             hHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHH
Confidence            467889999999999999999999988788899999999999999999999999999987762    2469999999999


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHh
Q 025113           82 VGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE  161 (257)
Q Consensus        82 ~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  161 (257)
                      +|+|++|+.+|+++++|||++.++.|+++|+.+||+|+.+++  +++++.+.+++++++. +++|++|++|+.+ ..||.
T Consensus        78 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~  153 (304)
T cd01562          78 QGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQG  153 (304)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHH
Confidence            999999999999999999999999999999999999999996  4899999999998886 8899999999988 68999


Q ss_pred             hHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------
Q 025113          162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------  219 (257)
Q Consensus       162 t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------  219 (257)
                      ++++||++|++ .||+||+|+||||+++|++++||.+.++++||+|||.+++++..    +.                  
T Consensus       154 ~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~  232 (304)
T cd01562         154 TIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKR  232 (304)
T ss_pred             HHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCC
Confidence            99999999996 59999999999999999999999999999999999998876531    10                  


Q ss_pred             cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 ~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.  .+.+.+.+.++++.|+|+|+.+++++|+++++++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~  272 (304)
T cd01562         233 PGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAE  272 (304)
T ss_pred             chHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEc
Confidence            01  122345678999999999999999999999999875

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=100.00  E-value=2.3e-51  Score=380.28  Aligned_cols=249  Identities=41%  Similarity=0.674  Sum_probs=215.9

Q ss_pred             hHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113            8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI   87 (257)
Q Consensus         8 ~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~   87 (257)
                      ++.+...+++|||+++++|+...+.+||+|+|++|||||||+|++.+++.++.++|.+.+| ++|+++|+||||+|+|++
T Consensus         2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~   80 (454)
T TIGR01137         2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALV   80 (454)
T ss_pred             ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHH
Confidence            3456778999999999999988888999999999999999999999999999999998887 569999999999999999


Q ss_pred             HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHH---HHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHH
Q 025113           88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE---EILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG  164 (257)
Q Consensus        88 a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~  164 (257)
                      |+.+|++++||||+++++.|+..++.+||+|+.+++...++   ...+.+++++++.++.+|++||+|+.|+..||.|+|
T Consensus        81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~  160 (454)
T TIGR01137        81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG  160 (454)
T ss_pred             HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence            99999999999999999999999999999999998632233   235667778777557788999999999888999999


Q ss_pred             HHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCC-----C--c----------ccceecc
Q 025113          165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGG-----Q--R----------GLFIFIS  227 (257)
Q Consensus       165 ~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~-----~--~----------~~~~i~~  227 (257)
                      +||++|+++.||+||+|+||||+++|++.++|+..|+++||||||.+++...+.     .  +          .+..+..
T Consensus       161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  240 (454)
T TIGR01137       161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTVLDR  240 (454)
T ss_pred             HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCcCCc
Confidence            999999976899999999999999999999999999999999999987533210     0  0          0111234


Q ss_pred             ccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          228 YLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       228 ~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ...|+++.|+|+|+.++++.|+++++++++
T Consensus       241 ~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~  270 (454)
T TIGR01137       241 KVVDEWIKTDDKESFKMARRLIKEEGLLVG  270 (454)
T ss_pred             hhCCeEEEECHHHHHHHHHHHHHHhCccCc
Confidence            467889999999999999999999999874

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-52  Score=361.79  Aligned_cols=245  Identities=22%  Similarity=0.287  Sum_probs=224.0

Q ss_pred             hhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHH
Q 025113            5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL   84 (257)
Q Consensus         5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~al   84 (257)
                      ...+..++..+..|||.+.-.|++.+|.++|+|+|++||+||||.||+.+++.+..++++    +.+|+++|.||||+|+
T Consensus        54 ~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~  129 (457)
T KOG1250|consen   54 SSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAA  129 (457)
T ss_pred             hhhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHH
Confidence            345677888999999999988999999999999999999999999999999999888775    4679999999999999


Q ss_pred             HHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHH
Q 025113           85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG  164 (257)
Q Consensus        85 A~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~  164 (257)
                      |++|+++|++++||||..++..|++.++.+||+|++.+  .+|+++...++++++++ ++.|++|||+|+. .+|++|++
T Consensus       130 Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G--~~~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig  205 (457)
T KOG1250|consen  130 AYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSG--EDWDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIG  205 (457)
T ss_pred             HHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEec--ccHHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHH
Confidence            99999999999999999999999999999999999999  46999999999999998 9999999999998 78999999


Q ss_pred             HHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CCc--------------------
Q 025113          165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQR--------------------  220 (257)
Q Consensus       165 ~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~~--------------------  220 (257)
                      .||.+|+..++++|+||||+||+++||+.++|..+|+++|||||+++|.++..    +.+                    
T Consensus       206 ~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~  285 (457)
T KOG1250|consen  206 LEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGE  285 (457)
T ss_pred             HHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhH
Confidence            99999996556699999999999999999999999999999999999987632    111                    


Q ss_pred             ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 ~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ..++..+.+.|+++.|+|+||..|+..|.++++.+|.
T Consensus       286 ~tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvE  322 (457)
T KOG1250|consen  286 NTFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVE  322 (457)
T ss_pred             HHHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheec
Confidence            1256677899999999999999999999999999874

>PRK06352 threonine synthase; Validated

Probab=100.00  E-value=1.4e-51  Score=369.11  Aligned_cols=239  Identities=22%  Similarity=0.259  Sum_probs=207.8

Q ss_pred             HhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113            9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus         9 ~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      .++++.+|+|||++++.|+...+.+||+|+|++|||||||||++.+++.++.++|.     .+||++|+||||+|+|++|
T Consensus        20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~a   94 (351)
T PRK06352         20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYA   94 (351)
T ss_pred             CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence            45888999999999999988778899999999999999999999999999999874     5799999999999999999


Q ss_pred             HHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113           89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI  167 (257)
Q Consensus        89 ~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei  167 (257)
                      +.+|++|+||||++ .++.|+++++.+||+|+.+++  +++++.+.+++++++. ++++++ +.||++ +.||.|+++||
T Consensus        95 a~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~EI  169 (351)
T PRK06352         95 TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAFEI  169 (351)
T ss_pred             HHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHHHH
Confidence            99999999999997 589999999999999999995  5889999999998875 666555 568888 68999999999


Q ss_pred             HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCC-----cEEEEEeCCCCccccCCCc----------------ccceec
Q 025113          168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPD-----IKVYGVEPSESAVLNGGQR----------------GLFIFI  226 (257)
Q Consensus       168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~-----~~vigv~~~~~~~~~~~~~----------------~~~~i~  226 (257)
                      ++|++..||+||+|+|+||+++|++++||++.++     ++||+|||.+++++..+.+                ..+...
T Consensus       170 ~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~  249 (351)
T PRK06352        170 CEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLA  249 (351)
T ss_pred             HHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHH
Confidence            9999767999999999999999999999998876     8999999999876543221                111111


Q ss_pred             ----cccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          227 ----SYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       227 ----~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                          +...+.++.|+|+|+.+|+++|+++++++++
T Consensus       250 ~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~ve  284 (351)
T PRK06352        250 EAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIE  284 (351)
T ss_pred             HHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEc
Confidence                1223348999999999999999999999875

>PRK07591 threonine synthase; Validated

Probab=100.00  E-value=2.6e-51  Score=375.12  Aligned_cols=240  Identities=17%  Similarity=0.205  Sum_probs=214.2

Q ss_pred             hhhcccCCCCceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDGCVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~~~~-~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      .+++++|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.+|.+.|.     .+|+++|+||||+|+|++|
T Consensus        82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a  156 (421)
T PRK07591         82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA  156 (421)
T ss_pred             CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence            47889999999999999888884 89999999999999999999999999999885     5789999999999999999


Q ss_pred             HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHH
Q 025113           89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW  168 (257)
Q Consensus        89 ~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~  168 (257)
                      +++|++|+||||+++++.|+.+++.+||+|+.+++  +++++.+.+++++++.++++|++++.||+. +.|++|+++||+
T Consensus       157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~  233 (421)
T PRK07591        157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVA  233 (421)
T ss_pred             HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHH
Confidence            99999999999999999999999999999999995  489999999999888768899999888887 789999999999


Q ss_pred             hhhCCC-CCEEEEecCchhHHHHHHHHHHhc-------CCCcEEEEEeCCCCccccC----CC-----------------
Q 025113          169 QDSGGK-VDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVYGVEPSESAVLNG----GQ-----------------  219 (257)
Q Consensus       169 ~ql~~~-~d~iv~pvG~Gg~~aGi~~~~k~~-------~~~~~vigv~~~~~~~~~~----~~-----------------  219 (257)
                      +|++++ ||+||+|+|+||+++|++.+|+++       .+.+|||+|||++++++..    +.                 
T Consensus       234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~  313 (421)
T PRK07591        234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAI  313 (421)
T ss_pred             HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheec
Confidence            999755 999999999999999999999997       5789999999999877642    10                 


Q ss_pred             --cc----cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 --RG----LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 --~~----~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                        |.    .+++++.+.++++.|+|+|+.+|+++|+++++++++
T Consensus       314 ~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~e  357 (421)
T PRK07591        314 GNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTE  357 (421)
T ss_pred             CCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeec
Confidence              00    012345566789999999999999999999999874

>PRK08197 threonine synthase; Validated

Probab=100.00  E-value=2.8e-51  Score=372.63  Aligned_cols=239  Identities=21%  Similarity=0.208  Sum_probs=212.3

Q ss_pred             hhhcccCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      .++.++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|.+.|.     .+|+++|+||||+|+|++|
T Consensus        72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a  146 (394)
T PRK08197         72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA  146 (394)
T ss_pred             CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence            4888999999999999987777 499999999999999999999999999998874     6799999999999999999


Q ss_pred             HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHH
Q 025113           89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW  168 (257)
Q Consensus        89 ~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~  168 (257)
                      +.+|++++||||+++++.|+.+++.+||+|+.+++  +++++.+.+++++++. ++++++++.||++ +.|+.|+++||+
T Consensus       147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~  222 (394)
T PRK08197        147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELA  222 (394)
T ss_pred             HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHH
Confidence            99999999999999999999999999999999995  4888888998888876 7999999999999 789999999999


Q ss_pred             hhhCCC-CCEEEEecCchhHHHHHHHHHHhc-------CCCcEEEEEeCCCCccccC----CC-----------------
Q 025113          169 QDSGGK-VDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVYGVEPSESAVLNG----GQ-----------------  219 (257)
Q Consensus       169 ~ql~~~-~d~iv~pvG~Gg~~aGi~~~~k~~-------~~~~~vigv~~~~~~~~~~----~~-----------------  219 (257)
                      +|++++ ||+||+|+|+||+++|++.+|+++       .+.+++|+|||++++++..    +.                 
T Consensus       223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~  302 (394)
T PRK08197        223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIR  302 (394)
T ss_pred             HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhh
Confidence            999754 999999999999999999999987       3789999999999876531    10                 


Q ss_pred             -ccc------ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 -RGL------FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 -~~~------~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       +.+      .+.++.+.+.++.|+|+|+.+|+++|+++++++++
T Consensus       303 ~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~ve  347 (394)
T PRK08197        303 VPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFAC  347 (394)
T ss_pred             CCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceEC
Confidence             001      12234566779999999999999999999999874

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=4.9e-52  Score=355.69  Aligned_cols=250  Identities=59%  Similarity=0.920  Sum_probs=231.1

Q ss_pred             hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113            7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF   86 (257)
Q Consensus         7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~   86 (257)
                      ....+...+|+|||+.+.+....+.+++++|+|.+||+||.|||.++.|+.+|+..|.+.||.+++++++|||+|.++|+
T Consensus        42 ~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~  121 (362)
T KOG1252|consen   42 ILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAY  121 (362)
T ss_pred             hhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHH
Confidence            45677889999999999999888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHH---HHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113           87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE---ILEKGEEILKKTPDGYLLRQFENPANPKIHYETT  163 (257)
Q Consensus        87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  163 (257)
                      +|+..|++++++||+.++.+|+..|+.|||+|++++....++.   ++..+.++..+.|+.+.++||.||.||..||.|+
T Consensus       122 ~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~tt  201 (362)
T KOG1252|consen  122 MAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETT  201 (362)
T ss_pred             HHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccc
Confidence            9999999999999999999999999999999999997655655   8889999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCccc--cee------------cccc
Q 025113          164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGL--FIF------------ISYL  229 (257)
Q Consensus       164 ~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~--~~i------------~~~~  229 (257)
                      +.|||+|+.+++|.+|.++|||||++|+.+++|+.+|+++|++|||.+|..+.+..+++  +.+            ....
T Consensus       202 g~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~  281 (362)
T KOG1252|consen  202 GPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKL  281 (362)
T ss_pred             cHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHH
Confidence            99999999999999999999999999999999999999999999999998887766665  333            2335


Q ss_pred             CCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          230 FRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       230 ~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                      +|+.+.++++|+..+-++|+.+++++|
T Consensus       282 vd~~~~~~~d~A~~~Ar~La~eeGll~  308 (362)
T KOG1252|consen  282 VDEVLKVSSDEAIEMARRLALEEGLLV  308 (362)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhCeee
Confidence            677888999999999999999999886

>PRK06381 threonine synthase; Validated

Probab=100.00  E-value=1.4e-50  Score=359.11  Aligned_cols=236  Identities=23%  Similarity=0.275  Sum_probs=207.8

Q ss_pred             cccCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHc
Q 025113           13 ELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR   91 (257)
Q Consensus        13 ~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~   91 (257)
                      ..+++|||++++.|+..+| .+||+|+|++|||||||||++.+++.++.++|.     ++|+++|+||||+|+|++|+.+
T Consensus        11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~~   85 (319)
T PRK06381         11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARLY   85 (319)
T ss_pred             ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHc
Confidence            4589999999999988887 599999999999999999999999999999885     6799999999999999999999


Q ss_pred             CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCC-CC-cchHhhHhhHHHHHHh
Q 025113           92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFE-NP-ANPKIHYETTGPEIWQ  169 (257)
Q Consensus        92 g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~g~~t~~~Ei~~  169 (257)
                      |++|+||||...+..|+++++.+||+|+.+++  +++++.+.+++++++. ++|++++++ || .+ +.||.|+++||++
T Consensus        86 G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~-~~G~~t~a~Ei~~  161 (319)
T PRK06381         86 GLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVD-IEAYSAIAYEIYE  161 (319)
T ss_pred             CCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchH-hhhHHHHHHHHHH
Confidence            99999999999999999999999999999996  4888999999988875 788888886 76 35 7899999999999


Q ss_pred             hhCCCCCEEEEecCchhHHHHHHHHHHhc------CCCcEEEEEeCCCCccccC----CCcc----------------c-
Q 025113          170 DSGGKVDAFISGIGTGGTVTGAGRFLKEN------NPDIKVYGVEPSESAVLNG----GQRG----------------L-  222 (257)
Q Consensus       170 ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~------~~~~~vigv~~~~~~~~~~----~~~~----------------~-  222 (257)
                      |++..||+||+|+|+||+++|++.+|+++      .+.++||+|||.+++++..    +...                + 
T Consensus       162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~  241 (319)
T PRK06381        162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPL  241 (319)
T ss_pred             HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCc
Confidence            99767999999999999999999999998      7899999999999865421    1000                0 


Q ss_pred             -----------ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          223 -----------FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       223 -----------~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                                 ++++..+.++.+.|+|+|+.+++++|+++++++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~e  287 (319)
T PRK06381        242 VSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNAL  287 (319)
T ss_pred             ccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccC
Confidence                       11234455689999999999999999999999875

>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-51  Score=336.49  Aligned_cols=247  Identities=22%  Similarity=0.323  Sum_probs=224.0

Q ss_pred             CchhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHH
Q 025113            2 EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG   81 (257)
Q Consensus         2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~   81 (257)
                      +++..++.|+...+..||.+.++.+.+..|.+||+|+|++|.+||||.|||.+.+..+.++.+    .+.|++.||||||
T Consensus        10 ~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHa   85 (323)
T KOG1251|consen   10 EDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHA   85 (323)
T ss_pred             HHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHH
Confidence            356678999999999999999999999999999999999999999999999999998875443    4679999999999


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHh
Q 025113           82 VGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE  161 (257)
Q Consensus        82 ~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  161 (257)
                      +|+|++|+..|+|++|+||.++|..|+..++.|||+|+.+++.  .+++.+.++++.++. +.+.++||++|.. +.|++
T Consensus        86 qAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqg  161 (323)
T KOG1251|consen   86 QALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQG  161 (323)
T ss_pred             HHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccc
Confidence            9999999999999999999999999999999999999999964  567788899998888 8899999999998 89999


Q ss_pred             hHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC------------------C-----
Q 025113          162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG------------------G-----  218 (257)
Q Consensus       162 t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~------------------~-----  218 (257)
                      |+++|+++|.+ .+|++|+|+|+||+++|++.+.+.+.|+++|++|||++++.-.+                  |     
T Consensus       162 TiA~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~  240 (323)
T KOG1251|consen  162 TIALELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSH  240 (323)
T ss_pred             hHHHHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhcc
Confidence            99999999995 89999999999999999999999999999999999988653211                  1     


Q ss_pred             -CcccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          219 -QRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       219 -~~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       .+..|+|+++++|++++|+|+||.+++++++++=+++|.
T Consensus       241 lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vE  280 (323)
T KOG1251|consen  241 LGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVE  280 (323)
T ss_pred             ccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeec
Confidence             122478999999999999999999999999999888763

>PRK07409 threonine synthase; Validated

Probab=100.00  E-value=2.3e-50  Score=362.03  Aligned_cols=239  Identities=23%  Similarity=0.230  Sum_probs=208.3

Q ss_pred             HhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113            9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus         9 ~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      .+++.++|+|||++++.|+...|.+||+|+|++|||||||||++.+++..+.++|.     .+||++|+||||+|+|++|
T Consensus        23 ~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a   97 (353)
T PRK07409         23 PVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYA   97 (353)
T ss_pred             CcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence            34788999999999999987778899999999999999999999999999998874     5799999999999999999


Q ss_pred             HHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113           89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI  167 (257)
Q Consensus        89 ~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei  167 (257)
                      +.+|++++||||+. .++.|+++++.+||+|+.+++  +++++.+.+++++++. +++++++ .||.+ +.||.|+++||
T Consensus        98 ~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI  172 (353)
T PRK07409         98 ARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEI  172 (353)
T ss_pred             HHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHHH
Confidence            99999999999997 689999999999999999995  5899999999998877 4677765 58888 67999999999


Q ss_pred             HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccCCCc----------------ccc--
Q 025113          168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLNGGQR----------------GLF--  223 (257)
Q Consensus       168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~~~~~----------------~~~--  223 (257)
                      ++|+++.||+||+|+|+||+++|++.+|+++.+      .+++|+|||.+++++..+.+                ..+  
T Consensus       173 ~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~~~~~~~  252 (353)
T PRK07409        173 VDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGNPASWDK  252 (353)
T ss_pred             HHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCCCCCHHH
Confidence            999976799999999999999999999998743      49999999999876643221                111  


Q ss_pred             --eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          224 --IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       224 --~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                        .+++...+.++.|+|+|+.+++++|+++++++++
T Consensus       253 ~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~  288 (353)
T PRK07409        253 AVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCE  288 (353)
T ss_pred             HHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeC
Confidence              1133445679999999999999999999999875

>PRK06450 threonine synthase; Validated

Probab=100.00  E-value=4e-50  Score=357.29  Aligned_cols=225  Identities=23%  Similarity=0.232  Sum_probs=194.4

Q ss_pred             hhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA   89 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~   89 (257)
                      .++.++|+|||++.+        +||+|+|++|||||||||++.++++++.+.|.     ++|+++|+||+|.|+|++|+
T Consensus        51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa  117 (338)
T PRK06450         51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA  117 (338)
T ss_pred             CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence            588999999999975        69999999999999999999999999998774     67999999999999999999


Q ss_pred             HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHh
Q 025113           90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ  169 (257)
Q Consensus        90 ~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~  169 (257)
                      .+|++++||||+++++.|+++++.+||+|+.+++  +++++.+.    +++. +.+|++++.||.+ +.||+|+++||++
T Consensus       118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~e  189 (338)
T PRK06450        118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAK  189 (338)
T ss_pred             HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999995  47765443    4444 7789999999998 7899999999999


Q ss_pred             hhCC-CCCEEEEecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCcccc----CCC------------------c
Q 025113          170 DSGG-KVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLN----GGQ------------------R  220 (257)
Q Consensus       170 ql~~-~~d~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~----~~~------------------~  220 (257)
                      |+++ .||+||+|+|+||+++|++++|+++.+      .+|+|+|||++++++.    +..                  |
T Consensus       190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~p  269 (338)
T PRK06450        190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTRP  269 (338)
T ss_pred             HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCCC
Confidence            9974 599999999999999999999998764      3899999999987664    110                  1


Q ss_pred             cc----ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 GL----FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 ~~----~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ..    ++.++.. ++++.|+|+|+.+|+++|++ ++++|+
T Consensus       270 ~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~ve  308 (338)
T PRK06450        270 FLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVE  308 (338)
T ss_pred             CCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEC
Confidence            00    1223444 68999999999999999987 588764

>PRK06260 threonine synthase; Validated

Probab=100.00  E-value=3.7e-50  Score=365.65  Aligned_cols=238  Identities=23%  Similarity=0.222  Sum_probs=210.5

Q ss_pred             hhhcccCCCCceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDGCVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~~~~-~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      .+++++|+|||++++.|+..+|. +||+|+|++|||||||||++.+++.++.++|.     .+||++|+||||.|+|++|
T Consensus        60 ~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~a  134 (397)
T PRK06260         60 IVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYA  134 (397)
T ss_pred             cccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence            58899999999999999887787 89999999999999999999999999999885     5799999999999999999


Q ss_pred             HHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113           89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI  167 (257)
Q Consensus        89 ~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei  167 (257)
                      +.+|++++||||.+ +++.|+.+++.+||+|+.+++  +++++.+.+++++++. ++++++++ ||++ +.||.|+++||
T Consensus       135 a~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~Ei  209 (397)
T PRK06260        135 ARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFEI  209 (397)
T ss_pred             HHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHHH
Confidence            99999999999997 789999999999999999995  5899999999998876 78888887 8888 78999999999


Q ss_pred             HhhhCC-CCCEEEEecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccC----CC-----------------
Q 025113          168 WQDSGG-KVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLNG----GQ-----------------  219 (257)
Q Consensus       168 ~~ql~~-~~d~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~~----~~-----------------  219 (257)
                      ++|+++ .||+||+|+|+||+++|++.+|+++.+      .+|||+||+.+++++..    +.                 
T Consensus       210 ~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~  289 (397)
T PRK06260        210 ADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIR  289 (397)
T ss_pred             HHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeE
Confidence            999976 699999999999999999999998763      37999999999876521    10                 


Q ss_pred             ---ccc----ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 ---RGL----FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 ---~~~----~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                         |..    +++++...++++.|+|+|+.+|++.|+++++++++
T Consensus       290 i~~p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~ve  334 (397)
T PRK06260        290 IGNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVE  334 (397)
T ss_pred             eCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeC
Confidence               100    12345566789999999999999999999999875

>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

Probab=100.00  E-value=5.3e-50  Score=356.14  Aligned_cols=239  Identities=22%  Similarity=0.235  Sum_probs=211.4

Q ss_pred             HhhhcccCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113            9 RDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI   87 (257)
Q Consensus         9 ~~i~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~   87 (257)
                      +++++++++|||+++++|+...+ .+||+|+|++|||||||||++.+++.++.++|.     ++|+++|+||||.|+|++
T Consensus        14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~   88 (324)
T cd01563          14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAY   88 (324)
T ss_pred             CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHH
Confidence            56889999999999999987665 699999999999999999999999999998873     679999999999999999


Q ss_pred             HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113           88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI  167 (257)
Q Consensus        88 a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei  167 (257)
                      |+.+|+++++|||+++++.|+++|+.+||+|+.++.  +++++.+.+++++++.  ++|++|++|+.+ +.||.|++.||
T Consensus        89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei  163 (324)
T cd01563          89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEI  163 (324)
T ss_pred             HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHH
Confidence            999999999999999999999999999999999995  5889999999998875  789999999999 67999999999


Q ss_pred             HhhhCC-CCCEEEEecCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccccC----C------------------
Q 025113          168 WQDSGG-KVDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLNG----G------------------  218 (257)
Q Consensus       168 ~~ql~~-~~d~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigv~~~~~~~~~~----~------------------  218 (257)
                      ++|+++ .+|+||+|+|+||+++|++.++|.+.      ++++||+|||.+++++..    +                  
T Consensus       164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~  243 (324)
T cd01563         164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIR  243 (324)
T ss_pred             HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeee
Confidence            999963 69999999999999999999999875      579999999999865521    1                  


Q ss_pred             --Cccc----ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          219 --QRGL----FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       219 --~~~~----~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                        .+..    +++++.+.++++.|+|+|+.+++++|+++++++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~  288 (324)
T cd01563         244 IGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVE  288 (324)
T ss_pred             cCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeC
Confidence              0111    12334566899999999999999999999999874

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.

>PRK06721 threonine synthase; Reviewed

Probab=100.00  E-value=1.3e-49  Score=356.59  Aligned_cols=240  Identities=24%  Similarity=0.278  Sum_probs=206.6

Q ss_pred             hHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113            8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI   87 (257)
Q Consensus         8 ~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~   87 (257)
                      ..+++..+++|||++++.+++..|.+||+|+|++|||||||||++.+++.++.++|.     .+||++|+||||+|+|++
T Consensus        19 ~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~   93 (352)
T PRK06721         19 TPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAY   93 (352)
T ss_pred             CCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence            445788899999999999988778899999999999999999999999999998874     679999999999999999


Q ss_pred             HHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113           88 AAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE  166 (257)
Q Consensus        88 a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E  166 (257)
                      |+.+|++|+||||++. ++.|+++++.+||+|+.+++  +++++.+.+++++++. ++++++ +.||.+ ..||.|+++|
T Consensus        94 aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~E  168 (352)
T PRK06721         94 AARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFE  168 (352)
T ss_pred             HHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHHH
Confidence            9999999999999974 78899999999999999994  5889999999998886 566665 568887 6799999999


Q ss_pred             HHhhhCCCCCEEEEecCchhHHHHHH----HHHHhcC-CCcEEEEEeCCCCccccCCC----------------cccc--
Q 025113          167 IWQDSGGKVDAFISGIGTGGTVTGAG----RFLKENN-PDIKVYGVEPSESAVLNGGQ----------------RGLF--  223 (257)
Q Consensus       167 i~~ql~~~~d~iv~pvG~Gg~~aGi~----~~~k~~~-~~~~vigv~~~~~~~~~~~~----------------~~~~--  223 (257)
                      |++|+++.||+||+|+|+||+++|++    .++|..+ |+++||+|||.+++++..+.                +..+  
T Consensus       169 i~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~~~~~~~  248 (352)
T PRK06721        169 ICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGNPASWSY  248 (352)
T ss_pred             HHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCCCCCHHH
Confidence            99999767999999999999999854    4556554 89999999999987664321                1111  


Q ss_pred             --eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          224 --IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       224 --~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                        ...+...++++.|+|+|+.+|+++|+++++++++
T Consensus       249 ~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~ve  284 (352)
T PRK06721        249 AVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAE  284 (352)
T ss_pred             HHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccC
Confidence              1134467899999999999999999999999875

>PLN02569 threonine synthase

Probab=100.00  E-value=5.2e-49  Score=363.20  Aligned_cols=242  Identities=15%  Similarity=0.096  Sum_probs=208.2

Q ss_pred             hhhcccCCCCceecccccCC-CCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDG-CVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI   87 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~-~~~-~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~   87 (257)
                      .+++++|+|||++++.|... .|. +||+|+|++|||||||||++.+++..+.+.|........|+++|+||+|.|+|++
T Consensus       126 ~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAay  205 (484)
T PLN02569        126 IVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAY  205 (484)
T ss_pred             ceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHH
Confidence            37889999999999999877 774 8999999999999999999999999998876522112569999999999999999


Q ss_pred             HHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113           88 AAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE  166 (257)
Q Consensus        88 a~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E  166 (257)
                      |+.+|++++||||++ .+..|+.+++.+||+|+.+++  +|+++++.+++++++. ++++++++ ||++ +.||+|+++|
T Consensus       206 aa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~E  280 (484)
T PLN02569        206 CAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIE  280 (484)
T ss_pred             HHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHH
Confidence            999999999999996 788999999999999999995  5999999999988877 68889988 9998 7899999999


Q ss_pred             HHhhhCCC-CCEEEEecCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccccC----CC----------------
Q 025113          167 IWQDSGGK-VDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLNG----GQ----------------  219 (257)
Q Consensus       167 i~~ql~~~-~d~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigv~~~~~~~~~~----~~----------------  219 (257)
                      |++|++++ ||+||+|+|+||+++|++.+|+++.      +.+|+|+||+++++++..    +.                
T Consensus       281 I~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi  360 (484)
T PLN02569        281 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAI  360 (484)
T ss_pred             HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhh
Confidence            99999765 9999999999999999999999863      457999999999877642    11                


Q ss_pred             ----ccc----ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 ----RGL----FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 ----~~~----~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                          |..    ...++...+.++.|+|+|+.+|+++ +++++++++
T Consensus       361 ~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~ve  405 (484)
T PLN02569        361 QIGDPVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLC  405 (484)
T ss_pred             ccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEEC
Confidence                000    0122334556899999999999999 999999875

>PRK08329 threonine synthase; Validated

Probab=100.00  E-value=4.9e-49  Score=352.31  Aligned_cols=229  Identities=21%  Similarity=0.225  Sum_probs=202.8

Q ss_pred             hhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHH
Q 025113           11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA   90 (257)
Q Consensus        11 i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~   90 (257)
                      ++.++|.|||+++.       .+||+|+|++|||||||||++.+++.++.+.|.     .+||++|+||||+|+|++|++
T Consensus        58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~  125 (347)
T PRK08329         58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS  125 (347)
T ss_pred             CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence            68899999999973       389999999999999999999999999999875     679999999999999999999


Q ss_pred             cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhh
Q 025113           91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD  170 (257)
Q Consensus        91 ~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q  170 (257)
                      +|++++||||+++++.|+.+++.+||+|+.+++  +++++.+.+++++++. +++|++++.||.+ +.||+|+++||++|
T Consensus       126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eq  201 (347)
T PRK08329        126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQ  201 (347)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHH
Confidence            999999999999999999999999999999996  3777888888888875 7788999999998 78999999999999


Q ss_pred             hCCCCCEEEEecCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccccCC--------------Cc-c---cceec
Q 025113          171 SGGKVDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLNGG--------------QR-G---LFIFI  226 (257)
Q Consensus       171 l~~~~d~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigv~~~~~~~~~~~--------------~~-~---~~~i~  226 (257)
                      ++ .||+||+|+|+||+++|++++|+++.      +.+++|+|||.++.++...              .+ .   .++++
T Consensus       202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l  280 (347)
T PRK08329        202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRAL  280 (347)
T ss_pred             cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHH
Confidence            96 89999999999999999999999873      5689999999998766421              11 1   12456


Q ss_pred             cccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          227 SYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       227 ~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.+.+.++.|+|+|+.+|+++|++ ++++++
T Consensus       281 ~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~ve  310 (347)
T PRK08329        281 EESNGFCISVGEEETRAALHWLRR-MGFLVE  310 (347)
T ss_pred             HHhCCEEEEECHHHHHHHHHHHHh-cCceEC
Confidence            677888999999999999999986 788774

>PRK08206 diaminopropionate ammonia-lyase; Provisional

Probab=100.00  E-value=3.6e-49  Score=358.49  Aligned_cols=250  Identities=20%  Similarity=0.215  Sum_probs=210.2

Q ss_pred             hhhhhHhh--hcccCCCCceecccccCCCC-ceEEEEeCCC-CCCCChhhHHHHHHHHHHHHc--CC-------------
Q 025113            4 NNAIKRDV--TELIGNTPMVYLNNVVDGCV-ARIAAKLETM-EPCSSVKDRIAYSMIKDAEDK--GL-------------   64 (257)
Q Consensus         4 ~~~~~~~i--~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~-~ptGS~K~R~a~~~~~~a~~~--g~-------------   64 (257)
                      +..+.+++  ....++|||++++.|+..+| .+||+|+|++ |||||||+|++.+.+.++..+  +.             
T Consensus        29 ~~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~  108 (399)
T PRK08206         29 AKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSG  108 (399)
T ss_pred             HHHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhh
Confidence            34567788  55899999999999998888 5999999997 599999999999988887632  21             


Q ss_pred             -CCC--CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 025113           65 -ITP--GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT  141 (257)
Q Consensus        65 -~~~--g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~  141 (257)
                       +.+  ...+|+++|+||||+|+|++|+.+|++|+||||..+++.|+..++.+||+|+.++.  +++++++.+++++++.
T Consensus       109 ~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~  186 (399)
T PRK08206        109 EVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN  186 (399)
T ss_pred             HHHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc
Confidence             000  01258999999999999999999999999999999999999999999999999995  5899999999988876


Q ss_pred             CCeEEeC-----CCCC-CcchHhhHhhHHHHHHhhhCC---CCCEEEEecCchhHHHHHHHHHHhcC--CCcEEEEEeCC
Q 025113          142 PDGYLLR-----QFEN-PANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENN--PDIKVYGVEPS  210 (257)
Q Consensus       142 ~~~~~~~-----~~~~-~~~~~~g~~t~~~Ei~~ql~~---~~d~iv~pvG~Gg~~aGi~~~~k~~~--~~~~vigv~~~  210 (257)
                       +++|++     ||+| |.+++.||.|+++||++|+++   .||+||+|+|+||+++|++.+++++.  +.++||+|||+
T Consensus       187 -g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~  265 (399)
T PRK08206        187 -GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPD  265 (399)
T ss_pred             -CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCC
Confidence             788886     6765 666688999999999999965   59999999999999999999999984  47999999999


Q ss_pred             CCccccC----CC-------------------cc--cceeccccCCeEEEeChHHHHHHHHHHHh----hcCeec
Q 025113          211 ESAVLNG----GQ-------------------RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLL----HIFTLV  256 (257)
Q Consensus       211 ~~~~~~~----~~-------------------~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~----~~~~~v  256 (257)
                      +++++..    +.                   ++  .+++.+.+.|+++.|+|+|+.+|+++|++    ++++++
T Consensus       266 gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~v  340 (399)
T PRK08206        266 QADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVS  340 (399)
T ss_pred             CCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeee
Confidence            9877631    11                   00  12334567899999999999999999996    677776

>PRK05638 threonine synthase; Validated

Probab=100.00  E-value=5.6e-49  Score=362.31  Aligned_cols=235  Identities=19%  Similarity=0.183  Sum_probs=206.1

Q ss_pred             hhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA   89 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~   89 (257)
                      .++.++|+|||++++ ++..+|.+||+|+|++|||||||||++.+++.+|.+.|.     .+|+++|+||||.|+|++|+
T Consensus        59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa  132 (442)
T PRK05638         59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSA  132 (442)
T ss_pred             ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHH
Confidence            378899999999994 666677899999999999999999999999999998864     67999999999999999999


Q ss_pred             HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHh
Q 025113           90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ  169 (257)
Q Consensus        90 ~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~  169 (257)
                      .+|++|+||||+++++.|+.+++.+||+|+.+++  +++++.+.+++++++. +++++++++||.+ +.||+|+++||++
T Consensus       133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~e  208 (442)
T PRK05638        133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWE  208 (442)
T ss_pred             HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHH
Confidence            9999999999999999999999999999999984  5899999999988776 8999999999998 7899999999999


Q ss_pred             hhCCCCCEEEEecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccC----CC---------------cc---
Q 025113          170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLNG----GQ---------------RG---  221 (257)
Q Consensus       170 ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~~----~~---------------~~---  221 (257)
                      |++  ||+||+|+|+||+++|++.+|+++.+      .++||+|||++++++..    +.               |.   
T Consensus       209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~  286 (442)
T PRK05638        209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKE  286 (442)
T ss_pred             HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHH
Confidence            995  99999999999999999999999865      37999999998877641    11               10   


Q ss_pred             -cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          222 -LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       222 -~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       ..++++...+.++.|+|+++.+++++|.+ ++++++
T Consensus       287 ~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~e  322 (442)
T PRK05638        287 YVSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAE  322 (442)
T ss_pred             HHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceec
Confidence             01234555778999999999999998875 688764

>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

Probab=100.00  E-value=5.9e-48  Score=330.11  Aligned_cols=213  Identities=40%  Similarity=0.562  Sum_probs=199.9

Q ss_pred             CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEE
Q 025113           18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII   97 (257)
Q Consensus        18 TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i   97 (257)
                      |||++++.++...+.+||+|+|++|||||||||++.+++..+.+.|.+ |+ ..|+++|+||+|.|+|++|+.+|+++++
T Consensus         1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v   78 (244)
T cd00640           1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI   78 (244)
T ss_pred             CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence            899999999887778999999999999999999999999999998865 33 5699999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCC-CCC
Q 025113           98 VMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG-KVD  176 (257)
Q Consensus        98 ~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~-~~d  176 (257)
                      |+|.+.++.++++++.+|++|+.++++  ++++.+.+++++++.++++|++||.|+.+ +.|+.++++||++|+++ .||
T Consensus        79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d  155 (244)
T cd00640          79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPD  155 (244)
T ss_pred             EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999964  89999999999998668999999999988 67888999999999976 599


Q ss_pred             EEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          177 AFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       177 ~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                      +||+|+|+||+++|++.+++...|.++||+|||                      +++.|+|+|+.++++.|++++++++
T Consensus       156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------~~~~v~d~~~~~a~~~l~~~~gi~~  213 (244)
T cd00640         156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------EVVTVSDEEALEAIRLLAREEGILV  213 (244)
T ss_pred             EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------------------eEEEECHHHHHHHHHHHHHHcCceE
Confidence            999999999999999999999999999999999                      7999999999999999999999987


Q ss_pred             C
Q 025113          257 C  257 (257)
Q Consensus       257 ~  257 (257)
                      +
T Consensus       214 ~  214 (244)
T cd00640         214 E  214 (244)
T ss_pred             C
Confidence            5

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy

>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family

Probab=100.00  E-value=6.9e-47  Score=340.51  Aligned_cols=247  Identities=18%  Similarity=0.208  Sum_probs=206.5

Q ss_pred             hhhhHhhhcccCCCCceecccccCCCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHHHc----------------CCCC
Q 025113            5 NAIKRDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEP-CSSVKDRIAYSMIKDAEDK----------------GLIT   66 (257)
Q Consensus         5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~p-tGS~K~R~a~~~~~~a~~~----------------g~~~   66 (257)
                      ...+.++..+ .+|||++++.|++.+| .+||+|+|++|+ |||||+|++.+.+..+.++                +.++
T Consensus        11 ~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (376)
T TIGR01747        11 LAFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIG   89 (376)
T ss_pred             HHHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHH
Confidence            3456677555 9999999999998888 489999999985 8999999999999887553                1211


Q ss_pred             C--CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCe
Q 025113           67 P--GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG  144 (257)
Q Consensus        67 ~--g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (257)
                      +  +..+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..++.+||+|+.+++  +++++.+.+++++++. ++
T Consensus        90 ~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~  166 (376)
T TIGR01747        90 EKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GW  166 (376)
T ss_pred             hhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-Cc
Confidence            1  24679999999999999999999999999999999999999999999999999995  5999999999998876 68


Q ss_pred             EEeC-----CCCC--CcchHhhHhhHHHHHHhhhCC----CCCEEEEecCchhHHHHHHHHHHhcCC-C-cEEEEEeCCC
Q 025113          145 YLLR-----QFEN--PANPKIHYETTGPEIWQDSGG----KVDAFISGIGTGGTVTGAGRFLKENNP-D-IKVYGVEPSE  211 (257)
Q Consensus       145 ~~~~-----~~~~--~~~~~~g~~t~~~Ei~~ql~~----~~d~iv~pvG~Gg~~aGi~~~~k~~~~-~-~~vigv~~~~  211 (257)
                      ++++     +|+|  |.. +.||+|+++||++|+++    .||+||+|+|+||+++|++.+++++.+ + ++||+|||.+
T Consensus       167 ~~~~~~~~~~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~g  245 (376)
T TIGR01747       167 VVVQDTAWEGYEKIPTWI-MQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDK  245 (376)
T ss_pred             EEeccccccccccCCchH-HHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence            8876     4655  333 78999999999999952    699999999999999999999987644 3 7999999999


Q ss_pred             CccccC------CC-------------------c--ccceeccccCCeEEEeChHHHHHHHHHHHhhc----Ceec
Q 025113          212 SAVLNG------GQ-------------------R--GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHI----FTLV  256 (257)
Q Consensus       212 ~~~~~~------~~-------------------~--~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~----~~~v  256 (257)
                      ++++..      +.                   +  ..+++++...+++++|+|+||.+|+++|+++.    ++++
T Consensus       246 a~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~  321 (376)
T TIGR01747       246 ADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIIS  321 (376)
T ss_pred             CCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEee
Confidence            987631      11                   1  12455677889999999999999999999854    5665

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).

>TIGR00260 thrC threonine synthase

Probab=100.00  E-value=9.7e-47  Score=335.75  Aligned_cols=239  Identities=19%  Similarity=0.150  Sum_probs=204.7

Q ss_pred             HhhhcccCCCCceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113            9 RDVTELIGNTPMVYLNNVVDGCVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI   87 (257)
Q Consensus         9 ~~i~~~~~~TPl~~~~~l~~~~~~-~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~   87 (257)
                      +.++..+++|||+++++++...+. +||+|+|++|||||||||++.+++.++.++|.     .+|+++|+||||+|+|++
T Consensus        15 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~   89 (328)
T TIGR00260        15 DLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAY   89 (328)
T ss_pred             hhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence            357788999999999998877776 99999999999999999999999999998874     579999999999999999


Q ss_pred             HHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCC--CcchHhhHhhHH
Q 025113           88 AAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFEN--PANPKIHYETTG  164 (257)
Q Consensus        88 a~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~t~~  164 (257)
                      |+.+|++++||||+. +++.|+..++.+||+|+.+++  +++++.+.+++++++. +.+++++ .|  |.+ +.||.|++
T Consensus        90 a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-~n~~~~~-~~g~~t~~  164 (328)
T TIGR00260        90 AGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNS-VNSIPYR-LEGQKTYA  164 (328)
T ss_pred             hccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-Ceeeccc-CCCCCeE-eeeehhHH
Confidence            999999999999998 899999999999999999995  5899999999988876 4555554 44  777 67889999


Q ss_pred             HHHHhhhCC-CCCEEEEecCchhHHHHHHHHHHhcCC-----CcEEEEEeCCCCcccc-----CCC--------------
Q 025113          165 PEIWQDSGG-KVDAFISGIGTGGTVTGAGRFLKENNP-----DIKVYGVEPSESAVLN-----GGQ--------------  219 (257)
Q Consensus       165 ~Ei~~ql~~-~~d~iv~pvG~Gg~~aGi~~~~k~~~~-----~~~vigv~~~~~~~~~-----~~~--------------  219 (257)
                      +||++|+++ .||+||+|+|+||+++|++.+|+++..     .+++++|||.+++++.     ++.              
T Consensus       165 ~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l  244 (328)
T TIGR00260       165 FEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAI  244 (328)
T ss_pred             HHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcce
Confidence            999999974 799999999999999999999997511     2399999999985442     111              


Q ss_pred             ----ccc----ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 ----RGL----FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 ----~~~----~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                          |..    +++++.+.++++.|+|+|+.+++++|+++++++++
T Consensus       245 ~~~~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~  290 (328)
T TIGR00260       245 DIGNPANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVE  290 (328)
T ss_pred             ecCCCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeEC
Confidence                110    12334577899999999999999999999999985

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.

>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase

Probab=100.00  E-value=6.8e-46  Score=336.16  Aligned_cols=246  Identities=18%  Similarity=0.178  Sum_probs=201.0

Q ss_pred             hhHhhhcccCCCCceecccccCCCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHHH--cCC--------------CC--
Q 025113            7 IKRDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEP-CSSVKDRIAYSMIKDAED--KGL--------------IT--   66 (257)
Q Consensus         7 ~~~~i~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~p-tGS~K~R~a~~~~~~a~~--~g~--------------~~--   66 (257)
                      .+.++. .+.+|||++++.|++..| .+||+|+|++|+ |||||+||+.+.+..+.+  .|.              .+  
T Consensus        32 ~~~~~~-~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~  110 (396)
T TIGR03528        32 FHQSFP-GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREK  110 (396)
T ss_pred             HHhcCC-CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhh
Confidence            344553 559999999999998888 599999999885 999999999999988633  221              00  


Q ss_pred             CCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEE
Q 025113           67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYL  146 (257)
Q Consensus        67 ~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (257)
                      ....+||++|+||||+|+|++|+.+|++|+||||.++++.|+..++.+||+|+.++.  +++++.+.+++++++. +++|
T Consensus       111 ~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~  187 (396)
T TIGR03528       111 LGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVM  187 (396)
T ss_pred             ccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEe
Confidence            012379999999999999999999999999999999999999999999999999994  5899999999998876 7888


Q ss_pred             eC-----CCCCCc-chHhhHhhHHHHHHhhhC----CCCCEEEEecCchhHHHHHHHHHHhc-CCC-cEEEEEeCCCCcc
Q 025113          147 LR-----QFENPA-NPKIHYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKEN-NPD-IKVYGVEPSESAV  214 (257)
Q Consensus       147 ~~-----~~~~~~-~~~~g~~t~~~Ei~~ql~----~~~d~iv~pvG~Gg~~aGi~~~~k~~-~~~-~~vigv~~~~~~~  214 (257)
                      ++     +|+|.. ..+.||+|+++||++|++    +.||+||+|+|+||+++|++.+++++ .++ ++||+|||+++++
T Consensus       188 v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~  267 (396)
T TIGR03528       188 VQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADC  267 (396)
T ss_pred             eccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCch
Confidence            85     576532 235799999999999996    26999999999999999999989554 444 5999999999887


Q ss_pred             ccC------CC-------------------cc--cceeccccCCeEEEeChHHHHHHHHHHHh----hcCeec
Q 025113          215 LNG------GQ-------------------RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLL----HIFTLV  256 (257)
Q Consensus       215 ~~~------~~-------------------~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~----~~~~~v  256 (257)
                      +..      +.                   |+  .+++++.+.|+++.|+|+|+.+|+++|++    ++++++
T Consensus       268 l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~  340 (396)
T TIGR03528       268 LYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVIS  340 (396)
T ss_pred             HHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceee
Confidence            632      11                   00  12344567899999999999999999998    567665

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.

>PRK13028 tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=1.5e-44  Score=326.39  Aligned_cols=242  Identities=20%  Similarity=0.211  Sum_probs=194.6

Q ss_pred             hhcccC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113           11 VTELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus        11 i~~~~~-~TPl~~~~~l~~~~-~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      ...+++ +|||+++++|++.+ +.+||+|+|++|||||||+|.+...+..+.+.|+    ...|+++|+||||+|+|++|
T Consensus        55 ~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aa  130 (402)
T PRK13028         55 LKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAA  130 (402)
T ss_pred             HHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence            345565 89999999999888 5799999999999999999999999999998885    24456789999999999999


Q ss_pred             HHcCCcEEEEeCCCCCH---HHHHHHHHCCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEeCCC-C--C--CcchHh
Q 025113           89 AARGYNLIIVMPSTCSM---ERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLLRQF-E--N--PANPKI  158 (257)
Q Consensus        89 ~~~g~~~~i~vp~~~~~---~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~--~--~~~~~~  158 (257)
                      +.+|++|+||||....+   .++..|+.+||+|+.++. ..+++++.+.+.+ ++++.++.+|+.+. .  +  |.++..
T Consensus       131 a~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~  210 (402)
T PRK13028        131 ALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRD  210 (402)
T ss_pred             HHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHH
Confidence            99999999999985433   567899999999999984 3578898888744 56654456666322 1  2  334456


Q ss_pred             hHhhHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCC--------CccccCCCcc-----
Q 025113          159 HYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE--------SAVLNGGQRG-----  221 (257)
Q Consensus       159 g~~t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~--------~~~~~~~~~~-----  221 (257)
                      |+++++.|+.+|+    +..||+||+|+|+||+++|++.+|++ .++++||||||.+        ++++..+.++     
T Consensus       211 ~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~  289 (402)
T PRK13028        211 FQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGF  289 (402)
T ss_pred             HhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceeccc
Confidence            9999999999997    33699999999999999999999986 4889999999998        6666443321     


Q ss_pred             --------------cce----------------eccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          222 --------------LFI----------------FISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       222 --------------~~~----------------i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                                    .+.                +.....++++.|+|+|+.+|++.|++++++++.
T Consensus       290 ~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~  355 (402)
T PRK13028        290 KSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPA  355 (402)
T ss_pred             ceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeec
Confidence                          011                112234689999999999999999999999863

>TIGR00263 trpB tryptophan synthase, beta subunit

Probab=100.00  E-value=9e-45  Score=328.52  Aligned_cols=241  Identities=19%  Similarity=0.201  Sum_probs=190.6

Q ss_pred             hhccc-CCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113           11 VTELI-GNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus        11 i~~~~-~~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      +..++ ++|||+++++|++.+| .+||+|+|++|||||||+|++..++..+.+.|.    ...|+++|+||||+|+|++|
T Consensus        43 ~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a  118 (385)
T TIGR00263        43 LRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATATAA  118 (385)
T ss_pred             HHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHH
Confidence            33444 4999999999988777 799999999999999999999999999988774    24455799999999999999


Q ss_pred             HHcCCcEEEEeCCC-CCH--HHHHHHHHCCCEEEEECCC-CCHHHHH-HHHHHHHHhCCCeEEe-CCCCC----CcchHh
Q 025113           89 AARGYNLIIVMPST-CSM--ERRIVLRALGAEIILADSA-LRFEEIL-EKGEEILKKTPDGYLL-RQFEN----PANPKI  158 (257)
Q Consensus        89 ~~~g~~~~i~vp~~-~~~--~~~~~l~~~Ga~v~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~----~~~~~~  158 (257)
                      +.+|++|+||||+. .+.  .++++|+.+||+|+.++.. +.++++. +.+++++++.++.+|+ +++.|    +.++..
T Consensus       119 ~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~  198 (385)
T TIGR00263       119 ALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRD  198 (385)
T ss_pred             HHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHH
Confidence            99999999999985 443  5788999999999999853 4577764 4455566665556666 44433    245568


Q ss_pred             hHhhHHHHHHhhhC----CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCcc-----
Q 025113          159 HYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQRG-----  221 (257)
Q Consensus       159 g~~t~~~Ei~~ql~----~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~-----  221 (257)
                      |++|+++||++|+.    ..||+||+|+|+||+++|++.++.. .|+++||||||.++.        ++..+.+.     
T Consensus       199 ~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~  277 (385)
T TIGR00263       199 FQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGM  277 (385)
T ss_pred             HhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCc
Confidence            99999999999973    2589999999999999999998855 699999999999852        22222110     


Q ss_pred             ------------------------------cceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          222 ------------------------------LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       222 ------------------------------~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                                                    .+.+.....++++.|+|+|+.++++.|++++++++
T Consensus       278 ~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~  342 (385)
T TIGR00263       278 KTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIP  342 (385)
T ss_pred             ccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCee
Confidence                                          01122334568999999999999999999999986

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.

>PRK03910 D-cysteine desulfhydrase; Validated

Probab=100.00  E-value=2.8e-45  Score=326.58  Aligned_cols=247  Identities=22%  Similarity=0.173  Sum_probs=205.2

Q ss_pred             hhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCceEEEEeC--CChH
Q 025113            5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLIEVT--SGNT   80 (257)
Q Consensus         5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s--sGN~   80 (257)
                      +..+++++..+++|||++++.|+...|.+||+|+|++||+  ||||+|++.+++.++.+.|.     ++||+++  +|||
T Consensus         3 ~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~   77 (331)
T PRK03910          3 LARFPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNH   77 (331)
T ss_pred             cCcCCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHH
Confidence            3456778899999999999998877788999999999997  59999999999999998874     5678764  5899


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHHCCCEEEEECCCCCHHH-HHHHHHHHHHhCCCeE-EeCCC
Q 025113           81 GVGLAFIAAARGYNLIIVMPSTCSM--------ERRIVLRALGAEIILADSALRFEE-ILEKGEEILKKTPDGY-LLRQF  150 (257)
Q Consensus        81 ~~alA~~a~~~g~~~~i~vp~~~~~--------~~~~~l~~~Ga~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~  150 (257)
                      |+|+|++|+.+|++++||||...++        .++..++.+||+|+.++.+++..+ +...++++.++.+..+ +..++
T Consensus        78 g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~  157 (331)
T PRK03910         78 ARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGG  157 (331)
T ss_pred             HHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCC
Confidence            9999999999999999999998765        456899999999999996433333 3455666766543333 45677


Q ss_pred             CCCcchHhhHhhHHHHHHhhhCC---CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----------
Q 025113          151 ENPANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----------  217 (257)
Q Consensus       151 ~~~~~~~~g~~t~~~Ei~~ql~~---~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----------  217 (257)
                      .|+.+ ..|+.+++.||++|+++   +||+||+|+|||||++|++.+|+++.|+++||||||.+++.+..          
T Consensus       158 ~~~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~  236 (331)
T PRK03910        158 SNALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQAT  236 (331)
T ss_pred             CCchh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence            88888 56888999999999963   69999999999999999999999999999999999998755321          


Q ss_pred             ----CC-----cccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          218 ----GQ-----RGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       218 ----~~-----~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                          +.     +..+.+.+.+.++.+.|+|+|+.+++++|+++++++++
T Consensus       237 a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~e  285 (331)
T PRK03910        237 AELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLD  285 (331)
T ss_pred             HHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccc
Confidence                11     11235667788999999999999999999999999875

>PRK04346 tryptophan synthase subunit beta; Validated

Probab=100.00  E-value=2.4e-44  Score=324.62  Aligned_cols=241  Identities=19%  Similarity=0.229  Sum_probs=190.7

Q ss_pred             hhcccC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113           11 VTELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus        11 i~~~~~-~TPl~~~~~l~~~~-~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      ...++| +|||+++++|++.+ +.+||+|+|++|||||||+|++...+..|.+.|+    ...|+++|+||||.|+|++|
T Consensus        51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~a  126 (397)
T PRK04346         51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAA  126 (397)
T ss_pred             HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence            345566 69999999999888 5799999999999999999999999999999886    34456689999999999999


Q ss_pred             HHcCCcEEEEeCCC-CC--HHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEe-CCCCC----CcchHh
Q 025113           89 AARGYNLIIVMPST-CS--MERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLL-RQFEN----PANPKI  158 (257)
Q Consensus        89 ~~~g~~~~i~vp~~-~~--~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~----~~~~~~  158 (257)
                      +++|++|+||||.. .+  ..++.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+|+ .+..+    |.+...
T Consensus       127 a~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~  206 (397)
T PRK04346        127 ALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRD  206 (397)
T ss_pred             HHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHH
Confidence            99999999999985 33  3577889999999999984 4467777665544 56654455555 33322    234356


Q ss_pred             hHhhHHHHHHhhhC----CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCcc-----
Q 025113          159 HYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQRG-----  221 (257)
Q Consensus       159 g~~t~~~Ei~~ql~----~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~-----  221 (257)
                      ||+|++.||.+|+.    ..||+||+|+|+||+++|++.+|++ .|+++||||||.++.        ++..+.++     
T Consensus       207 ~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~  285 (397)
T PRK04346        207 FQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGA  285 (397)
T ss_pred             hcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccc
Confidence            99999999999973    3699999999999999999999975 789999999999852        22211111     


Q ss_pred             --------------cc----------------eeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          222 --------------LF----------------IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       222 --------------~~----------------~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                                    .+                .+.....++++.|+|+|+.+|+++|+++++++.
T Consensus       286 ~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~  350 (397)
T PRK04346        286 KTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIP  350 (397)
T ss_pred             cceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEe
Confidence                          01                112334568999999999999999999999984

>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family

Probab=100.00  E-value=1.7e-44  Score=319.06  Aligned_cols=237  Identities=20%  Similarity=0.170  Sum_probs=194.5

Q ss_pred             ccCCCCceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCceEEEEe--CCChHHHHHHHHHH
Q 025113           14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGNTGVGLAFIAA   89 (257)
Q Consensus        14 ~~~~TPl~~~~~l~~~~~~~l~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~~~alA~~a~   89 (257)
                      ...+|||++++.|+...+.+||+|+|++||+  ||||+|++.+++.++.++|.     +.||++  |+||||+|+|++|+
T Consensus         4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~   78 (311)
T TIGR01275         4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK   78 (311)
T ss_pred             CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence            4579999999998887888999999999998  99999999999999999885     678887  66999999999999


Q ss_pred             HcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH----hCC-CeEEeCCCCCCcchHhhHhhH
Q 025113           90 ARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILEKGEEILK----KTP-DGYLLRQFENPANPKIHYETT  163 (257)
Q Consensus        90 ~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~  163 (257)
                      .+|+++++|||... +..+...++.+||+|+.++.. ++.+..+.++++++    +.+ ..++++++.||.+ ..|+.++
T Consensus        79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~  156 (311)
T TIGR01275        79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEA  156 (311)
T ss_pred             HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHH
Confidence            99999999999865 455677789999999999852 34444444444433    322 3456688889888 5566779


Q ss_pred             HHHHHhhhCC--CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc-c------------C-CC--ccccee
Q 025113          164 GPEIWQDSGG--KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL-N------------G-GQ--RGLFIF  225 (257)
Q Consensus       164 ~~Ei~~ql~~--~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~-~------------~-~~--~~~~~i  225 (257)
                      ++||++|+++  +||+||+|+|||||++|++.+||+++|+++|||||+..+.+. .            + +.  ...+++
T Consensus       157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  236 (311)
T TIGR01275       157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE  236 (311)
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence            9999999963  699999999999999999999999999999999998765211 1            0 11  224556


Q ss_pred             ccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          226 ISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       226 ~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ...+.+..+.|+|+|+.++++.|+++++++++
T Consensus       237 ~~~~~~~~~~v~d~e~~~~~~~la~~~gi~ve  268 (311)
T TIGR01275       237 LDDYSGPGYGKPTSEVAEIVKKVASREGIILD  268 (311)
T ss_pred             ECCcccCcCCCCCHHHHHHHHHHHHHhCCccC
Confidence            66777889999999999999999999999875

This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).

>PLN02618 tryptophan synthase, beta chain

Probab=100.00  E-value=5e-44  Score=323.09  Aligned_cols=243  Identities=19%  Similarity=0.241  Sum_probs=191.7

Q ss_pred             HhhhcccC-CCCceecccccCCC------CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHH
Q 025113            9 RDVTELIG-NTPMVYLNNVVDGC------VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG   81 (257)
Q Consensus         9 ~~i~~~~~-~TPl~~~~~l~~~~------~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~   81 (257)
                      +.+..++| +|||+++++|++.+      |.+||+|+|++|||||||+|.+...+..|.+.|+    ...|+++|+||||
T Consensus        57 ~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG  132 (410)
T PLN02618         57 GILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQHG  132 (410)
T ss_pred             HHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHH
Confidence            45677885 99999999998766      4799999999999999999999999998888774    2344466799999


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEECC-CCCHHHHHH-HHHHHHHhCCCeEEe-CCCC--CC
Q 025113           82 VGLAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADS-ALRFEEILE-KGEEILKKTPDGYLL-RQFE--NP  153 (257)
Q Consensus        82 ~alA~~a~~~g~~~~i~vp~~~---~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~--~~  153 (257)
                      .|+|++|+++|++|+||||...   +..++.+|+.+||+|+.++. +.+++++.. .+++++++..+.+|+ .+..  +|
T Consensus       133 ~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P  212 (410)
T PLN02618        133 VATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP  212 (410)
T ss_pred             HHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCC
Confidence            9999999999999999999853   35677799999999999964 357888874 456677764455555 2221  22


Q ss_pred             --cchHhhHhhHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCC
Q 025113          154 --ANPKIHYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQ  219 (257)
Q Consensus       154 --~~~~~g~~t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~  219 (257)
                        .+...++.++|.||.+|+    +..||+||+|+|+||+++|++.+|+. .++++||||||.++.        ++..+.
T Consensus       213 ~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~  291 (410)
T PLN02618        213 YPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGE  291 (410)
T ss_pred             CHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCC
Confidence              234578999999997775    34699999999999999999999975 689999999999862        222221


Q ss_pred             cc-------------------c---------------ceeccc-cCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          220 RG-------------------L---------------FIFISY-LFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       220 ~~-------------------~---------------~~i~~~-~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                      ++                   +               +..++. ..++++.|+|+|+.+|+++|++++++++
T Consensus       292 ~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~  363 (410)
T PLN02618        292 VGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIP  363 (410)
T ss_pred             cceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceE
Confidence            11                   0               111222 5678999999999999999999999985

>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=1.2e-44  Score=318.91  Aligned_cols=237  Identities=36%  Similarity=0.447  Sum_probs=194.3

Q ss_pred             hhcccCCCCceecc--cccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113           11 VTELIGNTPMVYLN--NVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus        11 i~~~~~~TPl~~~~--~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      |+.++++|||++++  .++...+.+||+|+|++|||||||+|++.+++.++.+++.     .+|+++|+||||.|+|++|
T Consensus         1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a   75 (306)
T PF00291_consen    1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA   75 (306)
T ss_dssp             GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred             CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence            57899999999975  4445567899999999999999999999999999998863     6789999999999999999


Q ss_pred             HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC--CCHHHHHHHHHHH---HHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113           89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA--LRFEEILEKGEEI---LKKTPDGYLLRQFENPANPKIHYETT  163 (257)
Q Consensus        89 ~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~t~  163 (257)
                      +.+|+++++|+|+++++.++++++.+||+|+.++..  ..++++.+.+++.   ....++.  ++|+ ++.+.+.||.++
T Consensus        76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~~~  152 (306)
T PF00291_consen   76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYATI  152 (306)
T ss_dssp             HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHHHH
T ss_pred             hhccccceeeeccccccccccceeeecceEEEccccccccccccccccccccccccccccc--cCcc-cchhhhhhhhhc
Confidence            999999999999999999999999999999999853  1234444444432   2222233  7777 555668999999


Q ss_pred             HHHHHhhhCCCCCE--EEEecCchhHHHHHHHHHHh--cCCCcEEEEEeCCCCccccC----CC----------------
Q 025113          164 GPEIWQDSGGKVDA--FISGIGTGGTVTGAGRFLKE--NNPDIKVYGVEPSESAVLNG----GQ----------------  219 (257)
Q Consensus       164 ~~Ei~~ql~~~~d~--iv~pvG~Gg~~aGi~~~~k~--~~~~~~vigv~~~~~~~~~~----~~----------------  219 (257)
                      +.||++|++ .||.  ||+|+|+||+++|++.+++.  . |++++|+|++.+++++..    +.                
T Consensus       153 ~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~  230 (306)
T PF00291_consen  153 GLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVP  230 (306)
T ss_dssp             HHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSS
T ss_pred             chhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeecccCC
Confidence            999999996 6665  99999999999999999999  7 899999999999876531    11                


Q ss_pred             ---cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 ---RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 ---~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                         ++  .+++.+.+.++++.|+|+|+.+++++|++++++++|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~  273 (306)
T PF00291_consen  231 MPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVE  273 (306)
T ss_dssp             SCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-
T ss_pred             ccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEc
Confidence               11  134556667788999999999999999999999875

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....

>TIGR03844 cysteate_syn cysteate synthase

Probab=100.00  E-value=1.2e-44  Score=327.93  Aligned_cols=237  Identities=14%  Similarity=0.060  Sum_probs=197.3

Q ss_pred             hcccCCCCceecccccCCCCc-eEEEEe-------CCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113           12 TELIGNTPMVYLNNVVDGCVA-RIAAKL-------ETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG   83 (257)
Q Consensus        12 ~~~~~~TPl~~~~~l~~~~~~-~l~~K~-------E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a   83 (257)
                      ....+.|||++++.|+..+|. +||+|+       |++|||||||||++.+++.++.+.|.     ..|+++|+||||+|
T Consensus        57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~a  131 (398)
T TIGR03844        57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRA  131 (398)
T ss_pred             CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHH
Confidence            346678999999999988887 999954       55899999999999999999998873     67999999999999


Q ss_pred             HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113           84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT  163 (257)
Q Consensus        84 lA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  163 (257)
                      +|++|+++|++++||||.+++..+...++.+|++|+.+++  +|+++.+.+++++++. +++..++++||.. +.|++|+
T Consensus       132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti  207 (398)
T TIGR03844       132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTV  207 (398)
T ss_pred             HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHH
Confidence            9999999999999999998654333335788999999985  5999999999998876 6655566778877 8999999


Q ss_pred             HHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcC-------CCcEEEEEeCCCCccccC----CC---------c---
Q 025113          164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENN-------PDIKVYGVEPSESAVLNG----GQ---------R---  220 (257)
Q Consensus       164 ~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~-------~~~~vigv~~~~~~~~~~----~~---------~---  220 (257)
                      ++||++|++..||+||+|+|+|+++.|++.+++++.       .-+++++||+++++++..    +.         +   
T Consensus       208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~  287 (398)
T TIGR03844       208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAE  287 (398)
T ss_pred             HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCcccc
Confidence            999999996449999999999988999999888742       337899999999887631    10         0   


Q ss_pred             --------------cc--------ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 --------------GL--------FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 --------------~~--------~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                                    .+        +++++...++++.|+|+||.+|+++|+++++++|+
T Consensus       288 ~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vE  346 (398)
T TIGR03844       288 NSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDIL  346 (398)
T ss_pred             ccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCcccc
Confidence                          00        23345667899999999999999999999999875

Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.

>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions

Probab=100.00  E-value=5.1e-44  Score=321.96  Aligned_cols=242  Identities=20%  Similarity=0.189  Sum_probs=191.2

Q ss_pred             hhhccc-CCCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEE-eCCChHHHHHHH
Q 025113           10 DVTELI-GNTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLAF   86 (257)
Q Consensus        10 ~i~~~~-~~TPl~~~~~l~~~~-~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~~~alA~   86 (257)
                      ....+. .+|||+++++|+..+ +.+||+|+|++|||||||+|++..++..+.++|.     ..+++ +|+||||+|+|+
T Consensus        26 ~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~alA~  100 (365)
T cd06446          26 LYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK-----KRVIAETGAGQHGVATAT  100 (365)
T ss_pred             HhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHH
Confidence            334444 499999999998777 5799999999999999999999999999998885     34555 699999999999


Q ss_pred             HHHHcCCcEEEEeCCCCC---HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHH-HHhCCC-eEEeCCC----CCCcch
Q 025113           87 IAAARGYNLIIVMPSTCS---MERRIVLRALGAEIILADSA-LRFEEILEKGEEI-LKKTPD-GYLLRQF----ENPANP  156 (257)
Q Consensus        87 ~a~~~g~~~~i~vp~~~~---~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~-~~~~~~-~~~~~~~----~~~~~~  156 (257)
                      +|+.+|++|+||||...+   +.++.+++.+||+|+.++.. .+++++...+.+. +++.++ +|+++++    .++.++
T Consensus       101 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~  180 (365)
T cd06446         101 ACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMV  180 (365)
T ss_pred             HHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHH
Confidence            999999999999998643   36788999999999999863 2456666544443 443223 4444432    123466


Q ss_pred             HhhHhhHHHHHHhhhC----CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCC--------Ccc---
Q 025113          157 KIHYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGG--------QRG---  221 (257)
Q Consensus       157 ~~g~~t~~~Ei~~ql~----~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~--------~~~---  221 (257)
                      ++||.|+++||++|+.    ..||+||+|+|+||+++|++.+++. .++++||+|||.+++++.+.        ...   
T Consensus       181 ~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~  259 (365)
T cd06446         181 RDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLH  259 (365)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceec
Confidence            8899999999999985    3699999999999999999998887 46899999999998776421        000   


Q ss_pred             ---c-----------------------------ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          222 ---L-----------------------------FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       222 ---~-----------------------------~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                         +                             +.+.+...|+++.|+|+|+.+++++|+++++++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~e  327 (365)
T cd06446         260 GLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPA  327 (365)
T ss_pred             chhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeC
Confidence               0                             01223456889999999999999999999999975

In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.

>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme

Probab=100.00  E-value=9.6e-44  Score=323.52  Aligned_cols=240  Identities=19%  Similarity=0.196  Sum_probs=191.2

Q ss_pred             HhhhcccCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEE-eCCChHHHHHH
Q 025113            9 RDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLA   85 (257)
Q Consensus         9 ~~i~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~~~alA   85 (257)
                      +......++|||+++++|++.++  .+||+|+|++|||||||+|++.+++..+.++|.     ..+++ +|+||||.|+|
T Consensus        60 ~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~alA  134 (419)
T TIGR01415        60 KRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSALS  134 (419)
T ss_pred             HHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHH
Confidence            33444446999999999987766  689999999999999999999999999999985     34564 68999999999


Q ss_pred             HHHHHcCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEECCCCCHHH------------------HHHHHHHHHHhCC-C
Q 025113           86 FIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADSALRFEE------------------ILEKGEEILKKTP-D  143 (257)
Q Consensus        86 ~~a~~~g~~~~i~vp~~~---~~~~~~~l~~~Ga~v~~~~~~~~~~~------------------~~~~~~~~~~~~~-~  143 (257)
                      ++|+.+|++|+||||...   ++.|+.+|+.+||+|+.++.+  +++                  +++.+.+++++.+ .
T Consensus       135 ~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~  212 (419)
T TIGR01415       135 LAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDT  212 (419)
T ss_pred             HHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCC
Confidence            999999999999999843   568899999999999999964  333                  2455666666544 4


Q ss_pred             eEEeCCCCCCcchHhhHhhHHHHHHhhhCC---CCCEEEEecCchhHHHHHHHHHHhc----CCCcEEEEEeCCCCcccc
Q 025113          144 GYLLRQFENPANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKEN----NPDIKVYGVEPSESAVLN  216 (257)
Q Consensus       144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~---~~d~iv~pvG~Gg~~aGi~~~~k~~----~~~~~vigv~~~~~~~~~  216 (257)
                      .|+++++.|  +...|+.++|+||++|++.   .||+||+|+|+||+++|++.+|.+.    .++++||+|||.++++++
T Consensus       213 ~y~~~~~~n--~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~  290 (419)
T TIGR01415       213 KYSLGSVLN--HVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLT  290 (419)
T ss_pred             EEEeCCCCc--HHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhh
Confidence            466666655  3477999999999999964   4999999999999999999888322    257999999999998775


Q ss_pred             CCC------------cc-----------cce-----------------eccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          217 GGQ------------RG-----------LFI-----------------FISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       217 ~~~------------~~-----------~~~-----------------i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                      .+.            +.           +..                 +.+....+++.|+|+|+.+|+++|++++++++
T Consensus       291 ~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~  370 (419)
T TIGR01415       291 RGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVP  370 (419)
T ss_pred             cCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCcc
Confidence            431            00           000                 01223346889999999999999999999987


Q ss_pred             C
Q 025113          257 C  257 (257)
Q Consensus       257 ~  257 (257)
                      .
T Consensus       371 e  371 (419)
T TIGR01415       371 A  371 (419)
T ss_pred             c
Confidence            4

This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.

>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=100.00  E-value=2.7e-44  Score=320.92  Aligned_cols=248  Identities=15%  Similarity=0.098  Sum_probs=201.1

Q ss_pred             hhhhHhhhcccCCCCceecccccCCCC--ceEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCceEEEEe--CC
Q 025113            5 NAIKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TS   77 (257)
Q Consensus         5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ss   77 (257)
                      +..++++...+++|||++++.++...|  .+||+|+|++||+   ||||+|.+.+++.++.++|.     .+|+++  |+
T Consensus         3 ~~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~   77 (337)
T PRK12390          3 LQKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQ   77 (337)
T ss_pred             CCCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCc
Confidence            445678889999999999999887777  6999999999987   78899999999999999885     667876  88


Q ss_pred             ChHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHhCCCeEE-
Q 025113           78 GNTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTPDGYL-  146 (257)
Q Consensus        78 GN~~~alA~~a~~~g~~~~i~vp~~~~--------~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-  146 (257)
                      ||||+|+|++|+.+|+++++|+|..++        ..++..++.+||+|+.++.+.  .+.++.+.+.+..++.++..| 
T Consensus        78 GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (337)
T PRK12390         78 SNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYA  157 (337)
T ss_pred             cHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEE
Confidence            999999999999999999999876543        236778999999999999631  234666666666666434444 


Q ss_pred             eCCCCCCc-chHhhHhhHHHHHHhh---hCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCC----
Q 025113          147 LRQFENPA-NPKIHYETTGPEIWQD---SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGG----  218 (257)
Q Consensus       147 ~~~~~~~~-~~~~g~~t~~~Ei~~q---l~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~----  218 (257)
                      ++.+.++. ....||.++++||++|   ++++||+||+|+|||||++|++.++|+..|++|||+||+.+++.+...    
T Consensus       158 ~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~  237 (337)
T PRK12390        158 IPAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLR  237 (337)
T ss_pred             eCCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHH
Confidence            44443321 1245888889999998   545799999999999999999999999999999999999998765321    


Q ss_pred             ------------C-c--ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          219 ------------Q-R--GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       219 ------------~-~--~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                                  . +  ..+.+.+.+.++.+.|+|+|+.+++++|+++++++++
T Consensus       238 ~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~e  291 (337)
T PRK12390        238 IARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTD  291 (337)
T ss_pred             HHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCcccc
Confidence                        0 1  1234566788999999999999999999999999875

>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia

Probab=100.00  E-value=9.4e-44  Score=313.79  Aligned_cols=234  Identities=21%  Similarity=0.195  Sum_probs=192.0

Q ss_pred             CCceecccccCCC--CceEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCceEEEEe--CCChHHHHHHHHHHH
Q 025113           18 TPMVYLNNVVDGC--VARIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGNTGVGLAFIAAA   90 (257)
Q Consensus        18 TPl~~~~~l~~~~--~~~l~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~~~alA~~a~~   90 (257)
                      |||++++.|+..+  +.+||+|+|++||+   ||||+|++.+++.++.++|.     ++|+++  |+||||+|+|++|+.
T Consensus         1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~   75 (307)
T cd06449           1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK   75 (307)
T ss_pred             CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence            8999999998766  56899999999998   56799999999999998885     568887  689999999999999


Q ss_pred             cCCcEEEEeCCCCC--------HHHHHHHHHCCCEEEEECCCC--CHHHHHHHH-HHHHHhCCCeEE-eCCC-CCCcchH
Q 025113           91 RGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKG-EEILKKTPDGYL-LRQF-ENPANPK  157 (257)
Q Consensus        91 ~g~~~~i~vp~~~~--------~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~  157 (257)
                      +|++++||||.+.+        ..|+++++.+||+|+.++.+.  ...++.+.+ +.+.++.+..++ .+++ +||.+ .
T Consensus        76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  154 (307)
T cd06449          76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-G  154 (307)
T ss_pred             cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-H
Confidence            99999999999776        468999999999999998641  122233333 333333323344 4555 48888 7


Q ss_pred             hhHhhHHHHHHhhhCC---CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC--------------CC-
Q 025113          158 IHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG--------------GQ-  219 (257)
Q Consensus       158 ~g~~t~~~Ei~~ql~~---~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~--------------~~-  219 (257)
                      .||.|++.||++|+++   .||+||+|+|||||++|++.++|++.++++||+|||.+++.+..              +. 
T Consensus       155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~  234 (307)
T cd06449         155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE  234 (307)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence            7999999999999854   69999999999999999999999999999999999999866421              11 


Q ss_pred             --cccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 --RGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 --~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                        ..++.+...+.++.+.|+|+|+.++++.|+++++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~e  274 (307)
T cd06449         235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITD  274 (307)
T ss_pred             CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccc
Confidence              12345666778889999999999999999999999875

>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase

Probab=100.00  E-value=1.6e-43  Score=315.91  Aligned_cols=247  Identities=17%  Similarity=0.138  Sum_probs=200.6

Q ss_pred             hhhhHhhhcccCCCCceecccccCCCCc--eEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCceEEEEe--CC
Q 025113            5 NAIKRDVTELIGNTPMVYLNNVVDGCVA--RIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TS   77 (257)
Q Consensus         5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~--~l~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ss   77 (257)
                      +..+.++...+++|||++++.+++.+|.  +||+|+|++||+   ||||+|++.+++.++.++|.     ++|+++  |+
T Consensus         2 ~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~   76 (337)
T TIGR01274         2 LSRFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQ   76 (337)
T ss_pred             CCcCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCc
Confidence            3456788899999999999999887764  999999999986   77899999999999999885     567876  77


Q ss_pred             ChHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHhC-CCeEE
Q 025113           78 GNTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKT-PDGYL  146 (257)
Q Consensus        78 GN~~~alA~~a~~~g~~~~i~vp~~~~--------~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~  146 (257)
                      ||||+|+|++|+.+|++|+||||+..+        +.|+.+++.+||+|+.++.+.  +..+....+.+.+++. +..++
T Consensus        77 gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~  156 (337)
T TIGR01274        77 SNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYP  156 (337)
T ss_pred             chHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEE
Confidence            999999999999999999999998542        579999999999999998531  1234555555555554 23356


Q ss_pred             eCCCC--CCcchHhhHhhHHHHHHhhh---CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----
Q 025113          147 LRQFE--NPANPKIHYETTGPEIWQDS---GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----  217 (257)
Q Consensus       147 ~~~~~--~~~~~~~g~~t~~~Ei~~ql---~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----  217 (257)
                      ++.+.  ++.. ..|+.++++||++|+   +++||+||+|+|+|||++|++.+++.+.++++|||||+.+++++..    
T Consensus       157 i~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~  235 (337)
T TIGR01274       157 IPAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQIL  235 (337)
T ss_pred             eCCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHH
Confidence            55553  3444 568889999999995   4479999999999999999999999999999999999999866521    


Q ss_pred             ------------CCc---ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          218 ------------GQR---GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       218 ------------~~~---~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                                  ..+   ..+.+...+.++.+.|+|+|+.++++.|+++++++++
T Consensus       236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~e  290 (337)
T TIGR01274       236 RIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTD  290 (337)
T ss_pred             HHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccC
Confidence                        011   1134555667889999999999999999999999875

This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.

>PRK12391 tryptophan synthase subunit beta; Reviewed

Probab=100.00  E-value=8e-43  Score=317.93  Aligned_cols=241  Identities=20%  Similarity=0.190  Sum_probs=190.8

Q ss_pred             hhcccCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEE-eCCChHHHHHHHH
Q 025113           11 VTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLAFI   87 (257)
Q Consensus        11 i~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~~~alA~~   87 (257)
                      +....++|||+++++|++.+|  .+||+|+|++|||||||+|++..++..+.+.|.     ..+++ +|+||||.|+|++
T Consensus        71 ~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~a  145 (427)
T PRK12391         71 IYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALA  145 (427)
T ss_pred             HHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHH
Confidence            345678999999999987766  689999999999999999999999999999885     34665 6789999999999


Q ss_pred             HHHcCCcEEEEeCCC---CCHHHHHHHHHCCCEEEEECCCCC----------------HHHHHHHHHHHHHhCCCeEEeC
Q 025113           88 AAARGYNLIIVMPST---CSMERRIVLRALGAEIILADSALR----------------FEEILEKGEEILKKTPDGYLLR  148 (257)
Q Consensus        88 a~~~g~~~~i~vp~~---~~~~~~~~l~~~Ga~v~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~  148 (257)
                      |+.+|++|+||||..   .++.|+.+|+.+||+|+.++.+.+                +..+++.+.+++.+.++.+|..
T Consensus       146 aa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~  225 (427)
T PRK12391        146 CALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYAL  225 (427)
T ss_pred             HHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEc
Confidence            999999999999974   366889999999999999985311                1124566667766654555554


Q ss_pred             CCCCCcchHhhHhhHHHHHHhhhC---CCCCEEEEecCchhHHHHHHHHHHh---cC-CCcEEEEEeCCCCccccCCC--
Q 025113          149 QFENPANPKIHYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKE---NN-PDIKVYGVEPSESAVLNGGQ--  219 (257)
Q Consensus       149 ~~~~~~~~~~g~~t~~~Ei~~ql~---~~~d~iv~pvG~Gg~~aGi~~~~k~---~~-~~~~vigv~~~~~~~~~~~~--  219 (257)
                      ... ..+.+.||.++|+||++|+.   ..||+||+|+|+||+++|++.+|..   .+ ++++||+|||.++++++.+.  
T Consensus       226 ~s~-~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~  304 (427)
T PRK12391        226 GSV-LNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYA  304 (427)
T ss_pred             CCC-CcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhcccccc
Confidence            433 23457899999999999985   3699999999999999999987732   34 88999999999998875421  


Q ss_pred             ------cc--c-------------cee-----------------ccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 ------RG--L-------------FIF-----------------ISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 ------~~--~-------------~~i-----------------~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                            .+  +             ..+                 .+....+++.|+|+|+.+|+++|++++++++.
T Consensus       305 ~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~  380 (427)
T PRK12391        305 YDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPA  380 (427)
T ss_pred             ccccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeec
Confidence                  00  0             000                 01122467999999999999999999999863

>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=7e-44  Score=297.80  Aligned_cols=246  Identities=38%  Similarity=0.600  Sum_probs=212.4

Q ss_pred             hhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA   89 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~   89 (257)
                      -+-..+|+|||+++..|++.-|++++.|.|.+||.||.|||.|.++++.|++.|+|-||. .|++.++||+|.++|..|.
T Consensus        42 Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg-~v~EGtaGsTgIslA~v~~  120 (391)
T KOG1481|consen   42 GVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGG-TVVEGTAGSTGISLAHVAR  120 (391)
T ss_pred             hhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCc-eEEecCCCccchhHHHhhh
Confidence            456789999999999999999999999999999999999999999999999999999995 4999999999999999999


Q ss_pred             HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-----CHH-HHHHHHHHHHHhCC--CeEEeCCCCCCcchHhhHh
Q 025113           90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-----RFE-EILEKGEEILKKTP--DGYLLRQFENPANPKIHYE  161 (257)
Q Consensus        90 ~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-----~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~  161 (257)
                      .+|.+|+|+||.+.+.+|.+.++.+||+|+.|++..     .|. .+.+.+.+...+..  ..+|.+||+|++||..||.
T Consensus       121 a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHye  200 (391)
T KOG1481|consen  121 ALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYE  200 (391)
T ss_pred             hcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhc
Confidence            999999999999999999999999999999998631     121 22333333333321  2477899999999999999


Q ss_pred             hHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCC-cEEEEEeCCCCccc--------cC-----CC--------
Q 025113          162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPD-IKVYGVEPSESAVL--------NG-----GQ--------  219 (257)
Q Consensus       162 t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~-~~vigv~~~~~~~~--------~~-----~~--------  219 (257)
                      |+|+|||.|..+++|++++.+|||||++|+.+++|+..+. ++++..+|.++-..        +.     |.        
T Consensus       201 tTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dt  280 (391)
T KOG1481|consen  201 TTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDT  280 (391)
T ss_pred             CcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcch
Confidence            9999999999999999999999999999999999999876 99999999998421        11     10        


Q ss_pred             ----------cccceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          220 ----------RGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       220 ----------~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                                ..++.+.+.+.|+.+.|+|+++.+.-++|..+++.+|
T Consensus       281 i~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFv  327 (391)
T KOG1481|consen  281 ITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFV  327 (391)
T ss_pred             hhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEe
Confidence                      1234556778999999999999999999999999876

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=2.8e-42  Score=327.46  Aligned_cols=241  Identities=19%  Similarity=0.250  Sum_probs=194.7

Q ss_pred             hhcccC-CCCceecccccCC----CC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113           11 VTELIG-NTPMVYLNNVVDG----CV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG   83 (257)
Q Consensus        11 i~~~~~-~TPl~~~~~l~~~----~~--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a   83 (257)
                      ...++| +|||+++++|+..    +|  .+||+|+|++|||||||+|++.+++..+.+.|+    ...|+++|+||||.|
T Consensus       319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~A  394 (695)
T PRK13802        319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVA  394 (695)
T ss_pred             HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHH
Confidence            456788 9999999998743    44  699999999999999999999999999999986    356889999999999


Q ss_pred             HHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHCCCEEEEECC-CCCHHHHHHHH-HHHHHhCC-CeEEeCCCCCC----
Q 025113           84 LAFIAAARGYNLIIVMPST---CSMERRIVLRALGAEIILADS-ALRFEEILEKG-EEILKKTP-DGYLLRQFENP----  153 (257)
Q Consensus        84 lA~~a~~~g~~~~i~vp~~---~~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~----  153 (257)
                      +|++|+++|++|+||||..   .+..|+.+|+.+||+|+.++. ..+++++.+.+ ++++++.+ .+|+++++.||    
T Consensus       395 lA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p  474 (695)
T PRK13802        395 TATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFP  474 (695)
T ss_pred             HHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcH
Confidence            9999999999999999985   367899999999999999984 34678876555 55666543 45678888654    


Q ss_pred             cchHhhHhhHHHHHHhhhCC-----CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----------C
Q 025113          154 ANPKIHYETTGPEIWQDSGG-----KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----------G  218 (257)
Q Consensus       154 ~~~~~g~~t~~~Ei~~ql~~-----~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----------~  218 (257)
                      .++..|++|+|.||++|+..     .||+||+|+|+||+++|++.+|+. .+++++|||||.++.+..+          +
T Consensus       475 ~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g  553 (695)
T PRK13802        475 AMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTG  553 (695)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccC
Confidence            34568999999999999842     699999999999999999999976 6889999999998743321          1


Q ss_pred             Cccc------c-------eecc-cc-------------------CC--eEEEeChHHHHHHHHHHHhhcCeec
Q 025113          219 QRGL------F-------IFIS-YL-------------------FR--SFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       219 ~~~~------~-------~i~~-~~-------------------~~--~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                      .++.      +       .+.. +.                   .+  .++.|+|+|+.+|.+.|+++|+|++
T Consensus       554 ~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIip  626 (695)
T PRK13802        554 ELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIP  626 (695)
T ss_pred             CccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccc
Confidence            1110      0       0000 01                   22  3589999999999999999999986

>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=100.00  E-value=3.2e-42  Score=306.53  Aligned_cols=246  Identities=17%  Similarity=0.183  Sum_probs=195.1

Q ss_pred             hhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCceEEE--EeCCChH
Q 025113            5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLI--EVTSGNT   80 (257)
Q Consensus         5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv--~~ssGN~   80 (257)
                      ++.+++++..+++|||++++.++...|++||+|+|++||+  ||||+|++.+++.++.++|.     .+|+  ++|+|||
T Consensus         9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~   83 (329)
T PRK14045          9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNH   83 (329)
T ss_pred             hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHH
Confidence            4567899999999999999998877788999999999996  89999999999999998885     4566  5899999


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHHCCCEEEEECCCCC---HHHHHHHHHHHHHhCCCeEE-eCCCCCCcc
Q 025113           81 GVGLAFIAAARGYNLIIVMPSTCSME-RRIVLRALGAEIILADSALR---FEEILEKGEEILKKTPDGYL-LRQFENPAN  155 (257)
Q Consensus        81 ~~alA~~a~~~g~~~~i~vp~~~~~~-~~~~l~~~Ga~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  155 (257)
                      |+|+|++|+.+|+++++|||...+.. +...++.+||+++.++...+   .+.+.+.+++++++.+..+| .+++.|+.+
T Consensus        84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~  163 (329)
T PRK14045         84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG  163 (329)
T ss_pred             HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence            99999999999999999999865433 66677899999998874222   33556667777666544555 466678888


Q ss_pred             hHhhHhhHHHHHHhhhC---CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc-cccC-------------C
Q 025113          156 PKIHYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA-VLNG-------------G  218 (257)
Q Consensus       156 ~~~g~~t~~~Ei~~ql~---~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~-~~~~-------------~  218 (257)
                      +. |+.+...||++|+.   .++|+||+|+|||||++|++.++|..+|+++||||++.+.. .+.+             +
T Consensus       164 ~~-g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g  242 (329)
T PRK14045        164 TL-GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLG  242 (329)
T ss_pred             HH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhC
Confidence            54 44444449999985   37999999999999999999999999999999999997732 1211             0


Q ss_pred             --Ccc-cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          219 --QRG-LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       219 --~~~-~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                        ... ...+.+...+++..++ +|..++++.|+++++++++
T Consensus       243 ~~~~~~~~~~~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ld  283 (329)
T PRK14045        243 VKVKVQEPELYDYSFGEYGKIT-KEVAKLIRSVGTMEGLILD  283 (329)
T ss_pred             CCCCccceEecccccCCCCCCC-HHHHHHHHHHHHhhCCCCc
Confidence              000 1223344447788888 6999999999999999874

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=5.8e-41  Score=318.46  Aligned_cols=240  Identities=21%  Similarity=0.216  Sum_probs=190.0

Q ss_pred             hcccC-CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHH
Q 025113           12 TELIG-NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA   90 (257)
Q Consensus        12 ~~~~~-~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~   90 (257)
                      ..+.+ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+.+.|+    ...|+++|+||||+|+|++|+.
T Consensus       265 ~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~  340 (610)
T PRK13803        265 QNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACAL  340 (610)
T ss_pred             HHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHH
Confidence            34454 899999999998788899999999999999999999999999988774    2445578999999999999999


Q ss_pred             cCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEECC-CCCHHHHHHHH-HHHHHhCCCeEEeCCCC---C--CcchHhhH
Q 025113           91 RGYNLIIVMPSTC---SMERRIVLRALGAEIILADS-ALRFEEILEKG-EEILKKTPDGYLLRQFE---N--PANPKIHY  160 (257)
Q Consensus        91 ~g~~~~i~vp~~~---~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~--~~~~~~g~  160 (257)
                      +|++|+||||...   +..++.+|+.+||+|+.++. ..+++++...+ +++..+.++.+|+.++.   +  |.++..|+
T Consensus       341 ~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~  420 (610)
T PRK13803        341 FGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQ  420 (610)
T ss_pred             cCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHh
Confidence            9999999999764   35688899999999999985 34677775544 44545555677775432   2  33433589


Q ss_pred             hhHHHHHHhhhC----CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCcc-------
Q 025113          161 ETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQRG-------  221 (257)
Q Consensus       161 ~t~~~Ei~~ql~----~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~-------  221 (257)
                      +|++.||++|+.    ..||+||+|+|+||+++|++.+|+. .++++||||||.++.        ++..+.++       
T Consensus       421 ~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~  499 (610)
T PRK13803        421 SVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMT  499 (610)
T ss_pred             hHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeecccee
Confidence            999999999983    2599999999999999999999964 789999999999852        22222110       


Q ss_pred             ------------cc----------------eeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          222 ------------LF----------------IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       222 ------------~~----------------~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                                  ++                .+.+...++++.|+|+|+.+|++.|++++++++
T Consensus       500 ~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~  562 (610)
T PRK13803        500 YLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIP  562 (610)
T ss_pred             eeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCcc
Confidence                        11                112233457999999999999999999999986

>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.3e-39  Score=289.50  Aligned_cols=239  Identities=22%  Similarity=0.189  Sum_probs=206.8

Q ss_pred             hhhcccCCCCceecccccCCCCc---eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDGCVA---RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF   86 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~~~~---~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~   86 (257)
                      .++...+.||+++.+.+...++.   ++|+|.|++|||||||||++..+++.+.+.|.     .+|+++||||+|.|+|.
T Consensus        69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa  143 (411)
T COG0498          69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA  143 (411)
T ss_pred             hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence            45778899999999888776663   59999999999999999999999999999883     46999999999999999


Q ss_pred             HHHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHH
Q 025113           87 IAAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP  165 (257)
Q Consensus        87 ~a~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~  165 (257)
                      ++.+.|+++.|++|.. ++..|+.+|..+|++++.+++  +||+|++.+++++++. ++++....-||.. +.|+.|+++
T Consensus       144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~f  219 (411)
T COG0498         144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAF  219 (411)
T ss_pred             HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHh
Confidence            9999999999999997 999999999999999999995  5999999999999866 5577777778887 789999999


Q ss_pred             HHHhhhCC-CCCEEEEecCchhHHHHHHHHHHhcCCC------cEEEEEeCCCCccccC------------------CCc
Q 025113          166 EIWQDSGG-KVDAFISGIGTGGTVTGAGRFLKENNPD------IKVYGVEPSESAVLNG------------------GQR  220 (257)
Q Consensus       166 Ei~~ql~~-~~d~iv~pvG~Gg~~aGi~~~~k~~~~~------~~vigv~~~~~~~~~~------------------~~~  220 (257)
                      |+++|+++ .||+|++|+|+||++.|++.++++..+.      ++..+||++++.++..                  +.|
T Consensus       220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~p  299 (411)
T COG0498         220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGNP  299 (411)
T ss_pred             HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccCCC
Confidence            99999973 6999999999999999999999988764      7889999999776532                  112


Q ss_pred             ccce----eccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 GLFI----FISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 ~~~~----i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ..++    ..+.....++.|||+|+.+++++|+++++++++
T Consensus       300 ~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~e  340 (411)
T COG0498         300 SNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIE  340 (411)
T ss_pred             CCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccC
Confidence            2221    122334559999999999999999999999875

>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]

Probab=99.97  E-value=5.4e-30  Score=218.18  Aligned_cols=239  Identities=19%  Similarity=0.233  Sum_probs=189.0

Q ss_pred             hccc-CCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHH
Q 025113           12 TELI-GNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA   90 (257)
Q Consensus        12 ~~~~-~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~   90 (257)
                      ..+. +||||...++|++.++.+||+|+|++|.||+||...+...+.-|.+.|+    .+.|.+...|.||.|.|.+|++
T Consensus        50 ~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~  125 (396)
T COG0133          50 KDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAAL  125 (396)
T ss_pred             HHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHH
Confidence            3344 4899999999999999999999999999999999999999999999997    5666788889999999999999


Q ss_pred             cCCcEEEEeCCC-C--CHHHHHHHHHCCCEEEEECC-CCCHHHHHHHH-HHHHHhCCCeEEeCCC---CCCc--chHhhH
Q 025113           91 RGYNLIIVMPST-C--SMERRIVLRALGAEIILADS-ALRFEEILEKG-EEILKKTPDGYLLRQF---ENPA--NPKIHY  160 (257)
Q Consensus        91 ~g~~~~i~vp~~-~--~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~--~~~~g~  160 (257)
                      +|++|+|||... +  ...++-.|+.+||+|+.|.. +.++.|+...| +.+.......+|+...   -+|+  .....+
T Consensus       126 fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ  205 (396)
T COG0133         126 FGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQ  205 (396)
T ss_pred             hCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHH
Confidence            999999999863 3  45568889999999999984 56788888765 5677766667776442   1222  223478


Q ss_pred             hhHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCccc------
Q 025113          161 ETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQRGL------  222 (257)
Q Consensus       161 ~t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~~------  222 (257)
                      +.++.|.-+|+    +.-||+||.|||+|+++.|+...|-. .+++++||||+.+.-        ++..|.++.      
T Consensus       206 ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~t  284 (396)
T COG0133         206 SVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKT  284 (396)
T ss_pred             HHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccc
Confidence            89999987775    44599999999999999999877754 367999999998743        232222221      


Q ss_pred             -------------ce----------------eccccCCeEEEeChHHHHHHHHHHHhhcCee
Q 025113          223 -------------FI----------------FISYLFRSFVLVDDGAVVHLHNYLLLHIFTL  255 (257)
Q Consensus       223 -------------~~----------------i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~  255 (257)
                                   +.                +...-..+++.|+|+|+.+|..+|.+.|+|+
T Consensus       285 yllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGII  346 (396)
T COG0133         285 YLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGII  346 (396)
T ss_pred             eeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcc
Confidence                         11                1112234599999999999999999999986

>PRK09225 threonine synthase; Validated

Probab=99.97  E-value=1e-29  Score=233.37  Aligned_cols=226  Identities=16%  Similarity=0.084  Sum_probs=175.8

Q ss_pred             CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHH---HHHHHHHcCCCCCCceEEEEeCCChHHHHH-HHHHHHcC
Q 025113           17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYS---MIKDAEDKGLITPGKTTLIEVTSGNTGVGL-AFIAAARG   92 (257)
Q Consensus        17 ~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~---~~~~a~~~g~~~~g~~~vv~~ssGN~~~al-A~~a~~~g   92 (257)
                      .+||.+++.       ++|+.-.+++||||||||++..   ++.++.+ +.    ...|+++||||+|.|+ +.++.+.|
T Consensus        88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g  155 (462)
T PRK09225         88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN  155 (462)
T ss_pred             ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence            478877742       6999999999999999999988   8888887 42    4679999999999998 67888999


Q ss_pred             CcEEEEeCCC-CCHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHhC-----CCeEEeCCCCCCcchHhhHhhHHH
Q 025113           93 YNLIIVMPST-CSMERRIVLRAL-GAEIILADSALRFEEILEKGEEILKKT-----PDGYLLRQFENPANPKIHYETTGP  165 (257)
Q Consensus        93 ~~~~i~vp~~-~~~~~~~~l~~~-Ga~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~  165 (257)
                      ++++|++|++ +++.++++|..+ |++|+.+..+++|++|.+.++++.++.     -+++-.+. -|+.. +.++.+.++
T Consensus       156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~gQ~~yyf  233 (462)
T PRK09225        156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANS-INIGR-LLAQIVYYF  233 (462)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHH-HHHHHHHHH
Confidence            9999999995 899999999999 998854443367999999998876551     14444444 37776 789999999


Q ss_pred             HHHhhhCC---CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc-----C-----------------CCc
Q 025113          166 EIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN-----G-----------------GQR  220 (257)
Q Consensus       166 Ei~~ql~~---~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~-----~-----------------~~~  220 (257)
                      |+++|+++   .||+|+||+|+||.+.|.+.+.+.-.|-.|+|+++ ..++++.     +                 +.|
T Consensus       234 ea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~~p  312 (462)
T PRK09225        234 YAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVATLSPAMDISVS  312 (462)
T ss_pred             HHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe-cCChHHHHHHHcCCCccCCCCCCcCchhhcCCC
Confidence            99999964   38999999999999999999844434556999997 4433331     1                 112


Q ss_pred             cccee----------------ccc---cCC---------------eEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 GLFIF----------------ISY---LFR---------------SFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 ~~~~i----------------~~~---~~~---------------~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ++++.                ++.   ...               ..+.|+|+|+.++++.+++++++++|
T Consensus       313 sn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~d  383 (462)
T PRK09225        313 SNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLID  383 (462)
T ss_pred             CcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEEC
Confidence            22211                111   122               57999999999999999999999987

>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]

Probab=99.96  E-value=2.5e-28  Score=207.44  Aligned_cols=248  Identities=19%  Similarity=0.154  Sum_probs=193.5

Q ss_pred             hhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCC--CCChhhHHHHHHHHHHHHcCCCCCCceEEEEe--CCCh
Q 025113            4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEP--CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGN   79 (257)
Q Consensus         4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~p--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN   79 (257)
                      .+..++|+....++|||-.+++++...|+++|+|+|++.+  .|.+|.|+..+++.+|.++|.     +++|+.  ..+|
T Consensus         2 ~l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSN   76 (323)
T COG2515           2 NLSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSN   76 (323)
T ss_pred             CcccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchh
Confidence            3556889999999999999999999999999999999966  779999999999999998874     778885  5699


Q ss_pred             HHHHHHHHHHHcCCcEEEEeCCCC----CHHHHHHHHHCCCEEEEECCCCCH--HHHHHHHHHHHHhCCCeEEeCCC-C-
Q 025113           80 TGVGLAFIAAARGYNLIIVMPSTC----SMERRIVLRALGAEIILADSALRF--EEILEKGEEILKKTPDGYLLRQF-E-  151 (257)
Q Consensus        80 ~~~alA~~a~~~g~~~~i~vp~~~----~~~~~~~l~~~Ga~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~-  151 (257)
                      |.+++|++|+++|++|+.++....    -..++...+.+|+++..++...++  ..-....++..++.++..|+.|. . 
T Consensus        77 h~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~  156 (323)
T COG2515          77 HVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGS  156 (323)
T ss_pred             HHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCc
Confidence            999999999999999999997654    233666778899999999975444  22233333333444444444443 3 


Q ss_pred             CCcchHhhHhhHHHHHHhhhC--CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC------------
Q 025113          152 NPANPKIHYETTGPEIWQDSG--GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG------------  217 (257)
Q Consensus       152 ~~~~~~~g~~t~~~Ei~~ql~--~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~------------  217 (257)
                      ||.- ..||...+.||.+|..  -++|.||+++|||||.||+..++....++.+|||+..........            
T Consensus       157 ~~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~  235 (323)
T COG2515         157 SPLG-ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAE  235 (323)
T ss_pred             Cccc-cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHH
Confidence            4433 5689999999999986  479999999999999999999999999999999999888754321            


Q ss_pred             ----CCcccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          218 ----GQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       218 ----~~~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                          +....+.+..++.-.-+-...+|.+++++.+.+.++++.|
T Consensus       236 ~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillD  279 (323)
T COG2515         236 LLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLD  279 (323)
T ss_pred             HcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccc
Confidence                1111223333344344667788999999999999999865

>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis

Probab=99.96  E-value=7.8e-28  Score=221.12  Aligned_cols=226  Identities=15%  Similarity=0.088  Sum_probs=173.7

Q ss_pred             CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHH---HHHHHHcCCCCCCceEEEEeCCChHHHH-HHHHHHHcC
Q 025113           17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSM---IKDAEDKGLITPGKTTLIEVTSGNTGVG-LAFIAAARG   92 (257)
Q Consensus        17 ~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~---~~~a~~~g~~~~g~~~vv~~ssGN~~~a-lA~~a~~~g   92 (257)
                      -+||.++..       ++|++.++++||||||||++..+   +..+.++.   .+...|+++||||+|.| ++.++...|
T Consensus        87 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~---~~~~~Il~ATSGdTG~Aa~aaf~~~~g  156 (460)
T cd01560          87 IAPLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRR---NERITILVATSGDTGSAAIEGFRGKPN  156 (460)
T ss_pred             ccceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhc---CCCeEEEEcCCCcHHHHHHHHHhCcCC
Confidence            377777653       68999999999999999999876   67776541   13478999999999999 478889999


Q ss_pred             CcEEEEeCCC-CCHHHHHHHHHCCC---EEEEECCCCCHHHHHHHHHHHHHhC-----CCeEEeCCCCCCcchHhhHhhH
Q 025113           93 YNLIIVMPST-CSMERRIVLRALGA---EIILADSALRFEEILEKGEEILKKT-----PDGYLLRQFENPANPKIHYETT  163 (257)
Q Consensus        93 ~~~~i~vp~~-~~~~~~~~l~~~Ga---~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~  163 (257)
                      ++++|++|.. +++.++.+|..+|+   +++.+++  +|++|++.++++.++.     -+++-.+. -|+.. +.++.+.
T Consensus       157 i~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~~Q~~y  232 (460)
T cd01560         157 VDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWAR-ILAQIVY  232 (460)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHH-HHHHHHH
Confidence            9999999995 89999999999996   7888884  5999999998876542     13343433 46666 6799999


Q ss_pred             HHHHHhhhCC----CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc-----C-----------------
Q 025113          164 GPEIWQDSGG----KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN-----G-----------------  217 (257)
Q Consensus       164 ~~Ei~~ql~~----~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~-----~-----------------  217 (257)
                      ++|+++|+.+    .||.|+||+|+||.+.|.+.+.+.-.|-.|+|+++.... .+.     |                 
T Consensus       233 yf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~-il~~~~~~G~y~~~~~~~~T~spamd  311 (460)
T cd01560         233 YFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEND-VLRRFFKTGRYDRRESLKQTLSPAMD  311 (460)
T ss_pred             HHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCCh-HHHHHHHcCCCcCCCCCCCCcCchhh
Confidence            9999999964    589999999999999999998665456678998755432 221     1                 


Q ss_pred             -CCcccc-eeccc---cCC------------------------------eEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          218 -GQRGLF-IFISY---LFR------------------------------SFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       218 -~~~~~~-~i~~~---~~~------------------------------~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       +.|+++ +++..   ...                              ..+.|+|+|+.++++.+++++++++|
T Consensus       312 I~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vd  386 (460)
T cd01560         312 ILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLID  386 (460)
T ss_pred             cCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEEC
Confidence             011111 11111   111                              56899999999999999999999987

The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.

>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]

Probab=99.94  E-value=1.3e-25  Score=191.87  Aligned_cols=234  Identities=20%  Similarity=0.184  Sum_probs=178.9

Q ss_pred             CCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEE-eCCChHHHHHHHHHHHcC
Q 025113           16 GNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLAFIAAARG   92 (257)
Q Consensus        16 ~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~~~alA~~a~~~g   92 (257)
                      ++|||+|.++|.+.++  +++|.|.|+..||||||...|......+...|.     ..++| ...|.||.|++++|+.+|
T Consensus        77 RPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~-----~rl~TETGAGQWGsAlslA~alf~  151 (432)
T COG1350          77 RPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA-----KRLTTETGAGQWGSALSLAAALFG  151 (432)
T ss_pred             CCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc-----eeeecccCCchHHHHHHHHHHHhC
Confidence            6999999999987655  799999999999999999999999999998885     44554 567999999999999999


Q ss_pred             CcEEEEeCCC---CCHHHHHHHHHCCCEEEEECCCCCH----------------HHHHHHHHHHHHhCCCeEEeCCCCCC
Q 025113           93 YNLIIVMPST---CSMERRIVLRALGAEIILADSALRF----------------EEILEKGEEILKKTPDGYLLRQFENP  153 (257)
Q Consensus        93 ~~~~i~vp~~---~~~~~~~~l~~~Ga~v~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (257)
                      ++|+|||-..   ..+.++..|+.+||+|+..+.+.+-                -=++..|-+.+-++++..|....--.
T Consensus       152 lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVln  231 (432)
T COG1350         152 LKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLN  231 (432)
T ss_pred             ceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHH
Confidence            9999999763   3677888999999999998864211                11355565666655545554432111


Q ss_pred             cchHhhHhhHHHHHHhh---hCCCCCEEEEecCchhHHHHHHHHHHh--c-CC-CcEEEEEeCCCCccccCCC-------
Q 025113          154 ANPKIHYETTGPEIWQD---SGGKVDAFISGIGTGGTVTGAGRFLKE--N-NP-DIKVYGVEPSESAVLNGGQ-------  219 (257)
Q Consensus       154 ~~~~~g~~t~~~Ei~~q---l~~~~d~iv~pvG~Gg~~aGi~~~~k~--~-~~-~~~vigv~~~~~~~~~~~~-------  219 (257)
                       ....|+..+|.|..+|   ++..||++|.|||+|++++|+..-|-.  + +. ..++|+|+|..++.+..|.       
T Consensus       232 -hvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gD  310 (432)
T COG1350         232 -HVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGD  310 (432)
T ss_pred             -HHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCc
Confidence             2357999999999555   566799999999999999998765532  2 22 2899999999999886421       


Q ss_pred             ------------------ccc---------------ceeccccCCeEEEeChHHHHHHHHHHHhhcCee
Q 025113          220 ------------------RGL---------------FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTL  255 (257)
Q Consensus       220 ------------------~~~---------------~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~  255 (257)
                                        |.+               ..+.+.-.-+.+..+.+|+-+|-+.+++.++++
T Consensus       311 tagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiV  379 (432)
T COG1350         311 TAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIV  379 (432)
T ss_pred             hhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCc
Confidence                              000               011223344588899999999999999999986

>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]

Probab=99.93  E-value=5.4e-25  Score=189.63  Aligned_cols=237  Identities=19%  Similarity=0.200  Sum_probs=172.6

Q ss_pred             ccCCCCceecccccCCC--CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHc
Q 025113           14 LIGNTPMVYLNNVVDGC--VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR   91 (257)
Q Consensus        14 ~~~~TPl~~~~~l~~~~--~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~   91 (257)
                      .-++|||++.++|-+.+  |.++|+|+|++||+||||...+...+..+.+.|+    ...|.+...|.||.|+|.+|+++
T Consensus       119 ~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~F  194 (477)
T KOG1395|consen  119 LGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAKF  194 (477)
T ss_pred             cCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHHh
Confidence            34699999999998765  4799999999999999999999999988888887    45566778899999999999999


Q ss_pred             CCcEEEEeCCC---CCHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEeCCCC-CC--c--chHhhHh
Q 025113           92 GYNLIIVMPST---CSMERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLLRQFE-NP--A--NPKIHYE  161 (257)
Q Consensus        92 g~~~~i~vp~~---~~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~--~--~~~~g~~  161 (257)
                      |++|+|+|-.+   ..+.++-+|+.+||+|+.+.. ..++.++...+-+ +.....-.+|+.... .|  .  ....-+.
T Consensus       195 Gl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhs  274 (477)
T KOG1395|consen  195 GLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHS  274 (477)
T ss_pred             CCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHH
Confidence            99999999764   367788999999999999985 3345554444322 222222233433221 11  1  1123467


Q ss_pred             hHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc--------ccCCCcc--------
Q 025113          162 TTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAV--------LNGGQRG--------  221 (257)
Q Consensus       162 t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~--------~~~~~~~--------  221 (257)
                      +++.|-..|.    ++.||.||.|+|+|++++|+..-|..- ..++.|+|+..+...        +..+.++        
T Consensus       275 vIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty  353 (477)
T KOG1395|consen  275 VIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTY  353 (477)
T ss_pred             HHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeecccccccccceee
Confidence            8888776553    456999999999999999998887653 347888888766432        1111111        


Q ss_pred             -----------cce----------------eccccCCeEEEeChHHHHHHHHHHHhhcCee
Q 025113          222 -----------LFI----------------FISYLFRSFVLVDDGAVVHLHNYLLLHIFTL  255 (257)
Q Consensus       222 -----------~~~----------------i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~  255 (257)
                                 ++.                +...-..+++.|+|.|..++.++|.+.|+|+
T Consensus       354 ~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGII  414 (477)
T KOG1395|consen  354 VLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGII  414 (477)
T ss_pred             eeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccc
Confidence                       011                1122345699999999999999999999986

>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]

Probab=99.92  E-value=1.3e-24  Score=184.23  Aligned_cols=242  Identities=19%  Similarity=0.259  Sum_probs=200.9

Q ss_pred             hcccCCCCceecccccC--------CCCceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCC---------
Q 025113           12 TELIGNTPMVYLNNVVD--------GCVARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPG---------   68 (257)
Q Consensus        12 ~~~~~~TPl~~~~~l~~--------~~~~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g---------   68 (257)
                      +.++..+||+.++.+.+        ....++|+|.+++.| +||.|.|+..|-+..     |.+.|.+.-.         
T Consensus        73 ~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~  152 (443)
T COG3048          73 TGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSE  152 (443)
T ss_pred             cCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcH
Confidence            45778899998876541        233589999999999 999999988877642     3455544332         


Q ss_pred             -------ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 025113           69 -------KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT  141 (257)
Q Consensus        69 -------~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~  141 (257)
                             ...|...|+||.|+++..+.+.+|+++++-|..++.++|...++..|.+|+..+  .+|..+++.-++-++..
T Consensus       153 ~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe--~DY~~AVeeGRk~a~~D  230 (443)
T COG3048         153 EFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYE--QDYGVAVEEGRKEAESD  230 (443)
T ss_pred             HHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEec--chhhHHHHHhhhhhccC
Confidence                   335778999999999999999999999999999999999999999999999999  56999999999999999


Q ss_pred             CCeEEeCCCCCCcchHhhHhhHHHHHHhhhC--------CCCCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCCC
Q 025113          142 PDGYLLRQFENPANPKIHYETTGPEIWQDSG--------GKVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSES  212 (257)
Q Consensus       142 ~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~--------~~~d~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~  212 (257)
                      |..||++..+.... ..||...+..+-.|+.        ..|-.|..|||.||.-.|++.++|.. ..+++++-+||..+
T Consensus       231 P~c~FiDDE~S~~L-FLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPths  309 (443)
T COG3048         231 PNCFFIDDENSRTL-FLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS  309 (443)
T ss_pred             CceEEecccchhhh-hhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCC
Confidence            99999987655443 6799999999988874        24678999999999999999999976 56799999999999


Q ss_pred             ccccC----------------------------CCcccc--eeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          213 AVLNG----------------------------GQRGLF--IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       213 ~~~~~----------------------------~~~~~~--~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                      +||.-                            +.|+.+  +.++.+.+.+++|+|+..++-+.+|++.+++-+
T Consensus       310 PcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rl  383 (443)
T COG3048         310 PCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRL  383 (443)
T ss_pred             hHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCccc
Confidence            99731                            223322  567778899999999999999999999998754

>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli

Probab=93.32  E-value=0.77  Score=36.97  Aligned_cols=119  Identities=15%  Similarity=0.094  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHcCCcEE-EEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhh
Q 025113           81 GVGLAFIAAARGYNLI-IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH  159 (257)
Q Consensus        81 ~~alA~~a~~~g~~~~-i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  159 (257)
                      |..+.++++.+|.++. -+.+.+.-...++.+...|-+|..++++  -....+.++.+.+++|+.-.+.-+.-+.+ ..-
T Consensus        13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~   89 (172)
T PF03808_consen   13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFD-EEE   89 (172)
T ss_pred             CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCC-hhh
Confidence            4578999999998873 3333344455677778889999999964  34455566777788877654432222222 112


Q ss_pred             HhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 025113          160 YETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGV  207 (257)
Q Consensus       160 ~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv  207 (257)
                      .    .+|.+++. ..||.|++..|+---= -.....+...+..-+++|
T Consensus        90 ~----~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~i~v  133 (172)
T PF03808_consen   90 E----EAIINRINASGPDIVFVGLGAPKQE-RWIARHRQRLPAGVIIGV  133 (172)
T ss_pred             H----HHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEE
Confidence            2    33333332 3689999999986432 233344444454445555

Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process

>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins

Probab=90.55  E-value=3.5  Score=33.12  Aligned_cols=120  Identities=17%  Similarity=0.132  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhh
Q 025113           81 GVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH  159 (257)
Q Consensus        81 ~~alA~~a~~~g~~~~i~vp~-~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  159 (257)
                      |..+.++++.+|.+..--++. +.-....+.+...+.+|..+++.  -+...+.++.+.+++|+...+...+-+.... .
T Consensus        11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~-~   87 (171)
T cd06533          11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFGPE-E   87 (171)
T ss_pred             cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-h
Confidence            456889999999883322322 22344566677779999999964  3444455567777787765443222222211 1


Q ss_pred             HhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEe
Q 025113          160 YETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVE  208 (257)
Q Consensus       160 ~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~  208 (257)
                          -.++.+++. ..||.|+++.|+---= -.....+...+..-+++|-
T Consensus        88 ----~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~~~vG  132 (171)
T cd06533          88 ----EEEIIERINASGADILFVGLGAPKQE-LWIARHKDRLPVPVAIGVG  132 (171)
T ss_pred             ----HHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEec
Confidence                122444442 3699999999985422 3334445555555566663

E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=90.19  E-value=3.2  Score=36.41  Aligned_cols=88  Identities=24%  Similarity=0.291  Sum_probs=64.8

Q ss_pred             eEEEEeCCCCC-----CCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HH
Q 025113           33 RIAAKLETMEP-----CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-ME  106 (257)
Q Consensus        33 ~l~~K~E~~~p-----tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~  106 (257)
                      +-++|.++.-|     |-+.-=-.|+-|+++..+-+   +|...|=-++.+--|+++--.|+.+|++.+-++..... ..
T Consensus       124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~iee  200 (354)
T KOG0025|consen  124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEE  200 (354)
T ss_pred             cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHH
Confidence            46777777555     44555557888999988754   46543323455566777778899999999999988654 55


Q ss_pred             HHHHHHHCCCEEEEECC
Q 025113          107 RRIVLRALGAEIILADS  123 (257)
Q Consensus       107 ~~~~l~~~Ga~v~~~~~  123 (257)
                      ..++|+.+||+-++.+.
T Consensus       201 l~~~Lk~lGA~~ViTee  217 (354)
T KOG0025|consen  201 LKKQLKSLGATEVITEE  217 (354)
T ss_pred             HHHHHHHcCCceEecHH
Confidence            67789999999998884

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=89.33  E-value=4.1  Score=30.37  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=22.8

Q ss_pred             CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 025113          174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE  211 (257)
Q Consensus       174 ~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~  211 (257)
                      .+|++|-++|++.++.-.   ++...+.=+++.+.-.+
T Consensus        58 ~~d~vid~~g~~~~~~~~---~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   58 GVDVVIDCVGSGDTLQEA---IKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             SEEEEEESSSSHHHHHHH---HHHEEEEEEEEEESSTS
T ss_pred             cceEEEEecCcHHHHHHH---HHHhccCCEEEEEEccC
Confidence            599999999987766544   44455554555554443

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=88.85  E-value=5.2  Score=35.64  Aligned_cols=58  Identities=28%  Similarity=0.463  Sum_probs=44.8

Q ss_pred             cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      ...+++|.+.+|.+.+|.-|..+--.|+.+|...++.+.   +..+.+.++.+||+.+..-
T Consensus       137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~y  194 (326)
T COG0604         137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVINY  194 (326)
T ss_pred             hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEcC
Confidence            567788888889999999999999999999984444332   3356668999999777654

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=88.60  E-value=7.1  Score=34.71  Aligned_cols=59  Identities=17%  Similarity=0.274  Sum_probs=42.4

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      ..+..+++|.+.+|... |..|.+++.+|+..|.+++++   ..++.+++.++.+|++.....
T Consensus       159 ~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~~  217 (349)
T TIGR03201       159 AVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLNP  217 (349)
T ss_pred             HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEecC
Confidence            33455677766555555 999999999999999975443   335667888889999765443

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=88.23  E-value=9.1  Score=33.32  Aligned_cols=59  Identities=20%  Similarity=0.270  Sum_probs=44.7

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +...+.+|...+|.+.+|..|.++.-.|+.+|.+++++.   .++.+.+.++.+|++-+...
T Consensus       137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~~  195 (329)
T cd08294         137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFNY  195 (329)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEeC
Confidence            445677887777777789999999999999999865543   34568888888999655444

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08230 glucose_DH Glucose dehydrogenase

Probab=88.20  E-value=4.2  Score=36.23  Aligned_cols=54  Identities=17%  Similarity=0.283  Sum_probs=41.9

Q ss_pred             CCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113           65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII  119 (257)
Q Consensus        65 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~  119 (257)
                      +.+|.+.+|. ..|..|...+..++..|.+++++.+...++.+++.++.+|++.+
T Consensus       170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v  223 (355)
T cd08230         170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV  223 (355)
T ss_pred             cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence            3456565555 56999999999999999987776665557788999999999864

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=85.93  E-value=9  Score=31.82  Aligned_cols=50  Identities=30%  Similarity=0.472  Sum_probs=41.3

Q ss_pred             EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        72 vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +|++.+|+.|..++.+....+.++++++.+. +....+.++..|++++..+
T Consensus         2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d   51 (233)
T PF05368_consen    2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD   51 (233)
T ss_dssp             EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred             EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence            5778899999999999888999999999876 4456677888999988555

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family

Probab=85.82  E-value=9.5  Score=30.92  Aligned_cols=115  Identities=14%  Similarity=0.082  Sum_probs=64.3

Q ss_pred             HHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEe--CCCCCCcchHh
Q 025113           82 VGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLL--RQFENPANPKI  158 (257)
Q Consensus        82 ~alA~~a~~~g~~~~i~vp~-~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  158 (257)
                      ..+.++++.+|.+..--++. +.-...++.....|.+|..+++.  -....+.++.+.+++|+....  ++|.++..   
T Consensus        14 ~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~---   88 (177)
T TIGR00696        14 IGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGAFGPLEPEE---   88 (177)
T ss_pred             HHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEECCCCChHH---
Confidence            56889999998664322221 11233455566788999999964  344455667777778765433  22222111   


Q ss_pred             hHhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 025113          159 HYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGV  207 (257)
Q Consensus       159 g~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv  207 (257)
                           -.++.+++. ..+|.++|+.|+=--= -...-.+...+..-++||
T Consensus        89 -----~~~i~~~I~~s~~dil~VglG~PkQE-~~~~~~~~~~~~~v~~gv  132 (177)
T TIGR00696        89 -----RKAALAKIARSGAGIVFVGLGCPKQE-IWMRNHRHLKPDAVMIGV  132 (177)
T ss_pred             -----HHHHHHHHHHcCCCEEEEEcCCcHhH-HHHHHhHHhCCCcEEEEe
Confidence                 133444442 3599999999984311 111223344444555665

The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=85.77  E-value=14  Score=33.71  Aligned_cols=56  Identities=27%  Similarity=0.334  Sum_probs=42.3

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII  119 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~  119 (257)
                      ....+.+|.+.+| ...|..|.+++..|+.+|.+.+++..  ..+.+++..+.+|++.+
T Consensus       179 ~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~v  234 (393)
T TIGR02819       179 VTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCETV  234 (393)
T ss_pred             HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeEE
Confidence            3455677766555 67799999999999999998766442  24678888999999853

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=85.66  E-value=21  Score=34.85  Aligned_cols=51  Identities=16%  Similarity=0.270  Sum_probs=40.1

Q ss_pred             eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      .+++....|..|+.+|-.-...|++++++   +.++.+.+.++.+|.+++.-+.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa  451 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA  451 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence            45888999999999999888889988776   3456677777888877766664

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=85.35  E-value=29  Score=33.27  Aligned_cols=131  Identities=21%  Similarity=0.178  Sum_probs=80.2

Q ss_pred             eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCC
Q 025113           70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ  149 (257)
Q Consensus        70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (257)
                      .+++....|+.|+.+|-.-+..|.+++++=.   ++.+.+.++..|.+++.-+..                         
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~-------------------------  469 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA-------------------------  469 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC-------------------------
Confidence            4578888999999988877777777655432   234555555555555444421                         


Q ss_pred             CCCCcchHhhHhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccceeccc
Q 025113          150 FENPANPKIHYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISY  228 (257)
Q Consensus       150 ~~~~~~~~~g~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~~i~~~  228 (257)
                           +         .|++++.+ .+.|.+++.++.-....-+....++.+|+.++++-...         +...+.++.
T Consensus       470 -----~---------~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~---------~~~~~~l~~  526 (558)
T PRK10669        470 -----N---------EEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHY---------DDEVAYITE  526 (558)
T ss_pred             -----C---------HHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECC---------HHHHHHHHH
Confidence                 1         22233321 35688888887755444455566777888888875321         122344455


Q ss_pred             cCCeEEEeChHHHHHHHHHHHhh
Q 025113          229 LFRSFVLVDDGAVVHLHNYLLLH  251 (257)
Q Consensus       229 ~~~~~v~v~d~e~~~a~~~l~~~  251 (257)
                      ...+.+..+++++.+.+....++
T Consensus       527 ~Gad~vv~p~~~~a~~i~~~l~~  549 (558)
T PRK10669        527 RGANQVVMGEREIARTMLELLET  549 (558)
T ss_pred             cCCCEEEChHHHHHHHHHHHhcC
Confidence            66667777788877777665554

>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]

Probab=85.20  E-value=27  Score=31.02  Aligned_cols=165  Identities=20%  Similarity=0.114  Sum_probs=94.8

Q ss_pred             EeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHHH--HHHHHHHHHHhCCCeE-EeCC
Q 025113           74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFEE--ILEKGEEILKKTPDGY-LLRQ  149 (257)
Q Consensus        74 ~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~  149 (257)
                      +.+|+|.-.-+-++   .+-+-++|.|+.--...+.  +..|. +|+..+|.=-.-+  ..+...++.+++|+.. .++|
T Consensus       143 ~cTSsNAvkvVe~~---~~~~~Iif~PD~~Lg~yva--~~tg~k~ii~w~G~C~VH~~ft~~~i~~~k~~~Pda~vlvHP  217 (324)
T COG0379         143 CCTSSNAVKVVESA---LDGDKILFLPDKNLGRYVA--KQTGAKKIILWPGHCIVHEEFTAEDIEELKEKYPDAEVLVHP  217 (324)
T ss_pred             EEecchHHHHHHhc---cCCCcEEEcCcHHHHHHHH--HHcCCCcEEEECCccchhhhcCHHHHHHHHHHCCCCEEEECC
Confidence            45667776666665   7778899999854433333  44677 9998886300001  1234556667788764 4555


Q ss_pred             CCCCcchHh---hHhhHH--HHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCC--CccccCCCcc-
Q 025113          150 FENPANPKI---HYETTG--PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE--SAVLNGGQRG-  221 (257)
Q Consensus       150 ~~~~~~~~~---g~~t~~--~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~--~~~~~~~~~~-  221 (257)
                      --.+.. ..   .-++++  .+..++.  +.+-+++     ||=.|+.--++...|+.++|-..+.+  |+.|...... 
T Consensus       218 EC~~~V-v~~AD~vGST~~ii~~~~~~--~~~~~iv-----~TE~g~~~~l~~~~P~k~~~~~~~~~~~C~~Mk~itL~~  289 (324)
T COG0379         218 ECPPEV-VELADFVGSTSQIIKAVKAS--PAQKFIV-----GTERGIVHRLQKEAPDKEFIPLPTAGAVCPTMKMITLEK  289 (324)
T ss_pred             CCCHHH-HHhccccccHHHHHHHHhcC--CCceEEE-----EecHHHHHHHHHHCCCCeEEccCCCCCcChhhhhhCHHH
Confidence            322221 11   112222  2333322  3455554     34567777888899999999998886  4444321111 


Q ss_pred             cceeccccCCeEEEeChHHHHHHHHHHHhh
Q 025113          222 LFIFISYLFRSFVLVDDGAVVHLHNYLLLH  251 (257)
Q Consensus       222 ~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~  251 (257)
                      -.+.+......-|.|+++-+.+|.+-|-+.
T Consensus       290 i~~~L~~~~~~eV~V~~~i~~~A~~aleRM  319 (324)
T COG0379         290 ILEALEEGGNNEVTVDEEIAERARRALERM  319 (324)
T ss_pred             HHHHHHhCCCceEEeCHHHHHHHHHHHHHH
Confidence            112222222258999999999998877553

>TIGR01064 pyruv_kin pyruvate kinase

Probab=84.49  E-value=28  Score=32.88  Aligned_cols=123  Identities=13%  Similarity=0.165  Sum_probs=75.3

Q ss_pred             HHHHHHHcCCcEEEEe-----------CCCCCHHHHHHHHHCCCEEEEECCC---CCH-HHHHHHHHHHHHhCCCeE---
Q 025113           84 LAFIAAARGYNLIIVM-----------PSTCSMERRIVLRALGAEIILADSA---LRF-EEILEKGEEILKKTPDGY---  145 (257)
Q Consensus        84 lA~~a~~~g~~~~i~v-----------p~~~~~~~~~~l~~~Ga~v~~~~~~---~~~-~~~~~~~~~~~~~~~~~~---  145 (257)
                      +..+|+..|+++++..           |..+....+......|++.+....+   +.| .++++...+.+++-...+   
T Consensus       262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~  341 (473)
T TIGR01064       262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL  341 (473)
T ss_pred             HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence            4567888999988865           3445667777778889999888753   223 355555444443221111   


Q ss_pred             --EeCCCC-CC--cchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 025113          146 --LLRQFE-NP--ANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES  212 (257)
Q Consensus       146 --~~~~~~-~~--~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~  212 (257)
                        |-.+.. ..  ..........+.++.+.+  +.++||+.+-+|.++--++    ...|.+.|+++.+...
T Consensus       342 ~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vS----r~rp~~PIiAvT~~~~  407 (473)
T TIGR01064       342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLS----KYRPNAPIIAVTPNER  407 (473)
T ss_pred             hhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHH----hhCCCCCEEEEcCCHH
Confidence              101100 00  011123344455666666  4789999999999876554    4578999999988764

This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=84.37  E-value=16  Score=31.93  Aligned_cols=59  Identities=20%  Similarity=0.316  Sum_probs=44.7

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +.+.+.+|.+.+|.+.+|-.|.+++..|+..|.+++++..   +..+.+.++.+|++.+...
T Consensus       132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~~  190 (325)
T TIGR02825       132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFNY  190 (325)
T ss_pred             HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEec
Confidence            4566778877667777899999999999999998665543   4567888889999655443

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=83.98  E-value=2.5  Score=38.09  Aligned_cols=55  Identities=22%  Similarity=0.240  Sum_probs=43.5

Q ss_pred             eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 025113           70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA  124 (257)
Q Consensus        70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~  124 (257)
                      ..++..+||..|.-+|+.+..++-.-.|++|..+.......+...|++++.++.+
T Consensus        41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~   95 (363)
T PF01041_consen   41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID   95 (363)
T ss_dssp             SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred             CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence            4578899999999999888444444889999988888999999999999999964

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=83.36  E-value=20  Score=31.54  Aligned_cols=57  Identities=21%  Similarity=0.253  Sum_probs=43.6

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-CCCEEEE
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIIL  120 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~-~Ga~v~~  120 (257)
                      +.+.+++|.+.+|.+.+|..|.++...|+.+|.++++..   .+..+.+.++. +|++-+.
T Consensus       145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~vi  202 (338)
T cd08295         145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDAF  202 (338)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCceeE
Confidence            345677888877888889999999999999999865543   34567787877 8986544

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=82.60  E-value=12  Score=32.09  Aligned_cols=53  Identities=26%  Similarity=0.307  Sum_probs=38.1

Q ss_pred             CCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        65 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      ..+|.+.+|. ..|..|..++..|+.+|.+.++++  +.++.+++.++.+|++.+.
T Consensus       118 ~~~g~~VlV~-G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i  170 (280)
T TIGR03366       118 DLKGRRVLVV-GAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA  170 (280)
T ss_pred             CCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence            3466564554 568899999999999999855555  3466788888889985433

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=82.58  E-value=17  Score=30.53  Aligned_cols=73  Identities=22%  Similarity=0.239  Sum_probs=46.9

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT  141 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~  141 (257)
                      .+.+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+..+ .+.++..+..++..++.
T Consensus         9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK12823          9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF   82 (260)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            36788999999999999999889998877654322223344555667777655432 23444445555554443

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=82.42  E-value=16  Score=32.08  Aligned_cols=57  Identities=30%  Similarity=0.468  Sum_probs=43.0

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      .+...+.+|.+.+|...+|..|.+++..|+.+|.+++++...   . +...++.+|++.+.
T Consensus       170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~  226 (350)
T cd08274         170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVI  226 (350)
T ss_pred             HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEE
Confidence            355667788777777778999999999999999996655432   2 66777889987443

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6

Probab=82.38  E-value=18  Score=33.23  Aligned_cols=126  Identities=20%  Similarity=0.234  Sum_probs=69.9

Q ss_pred             EEeCCC-hHHHHHHHHHHHcCCcEEEEeCC-CC---C-HHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHhCCCeE
Q 025113           73 IEVTSG-NTGVGLAFIAAARGYNLIIVMPS-TC---S-MERRIVLRALGA-EIILADSALRFEEILEKGEEILKKTPDGY  145 (257)
Q Consensus        73 v~~ssG-N~~~alA~~a~~~g~~~~i~vp~-~~---~-~~~~~~l~~~Ga-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (257)
                      +..|.| .+...+.|.....+..++.|.-+ .-   + ....+....+|| +++.++....|.  .+.+....+.  +..
T Consensus         2 LAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~a--nA~   77 (388)
T PF00764_consen    2 LAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKA--NAL   77 (388)
T ss_dssp             EE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHT--T--
T ss_pred             eeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHH--HHH
Confidence            445665 67777888888777899888843 11   2 233445677899 999999532221  1122222221  233


Q ss_pred             EeCCCCC---CcchHhhHhhHHHHHHhhhCCCCCEEEE-ecCchhHHHHHHHHHHhcCCCcEEEE
Q 025113          146 LLRQFEN---PANPKIHYETTGPEIWQDSGGKVDAFIS-GIGTGGTVTGAGRFLKENNPDIKVYG  206 (257)
Q Consensus       146 ~~~~~~~---~~~~~~g~~t~~~Ei~~ql~~~~d~iv~-pvG~Gg~~aGi~~~~k~~~~~~~vig  206 (257)
                      |-+.|-.   ...|.  ......|++++.  ..++|.. ++|-|--..=.-.+++.+.|+.+|++
T Consensus        78 Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via  138 (388)
T PF00764_consen   78 YEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA  138 (388)
T ss_dssp             BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred             hCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence            3332211   11222  244456777776  3688886 56888888888889999999988875

3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=82.19  E-value=10  Score=33.50  Aligned_cols=45  Identities=22%  Similarity=0.214  Sum_probs=37.5

Q ss_pred             ChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 025113           78 GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD  122 (257)
Q Consensus        78 GN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +|.++++..+++++|++++++.|+..  ++..++.++..|+++...+
T Consensus       162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~  208 (301)
T TIGR00670       162 GRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE  208 (301)
T ss_pred             CcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence            69999999999999999999999864  5555667777888887765

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=82.17  E-value=18  Score=32.22  Aligned_cols=58  Identities=21%  Similarity=0.201  Sum_probs=41.7

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      .+.+.+.+|.+.+|. ..|-.|.+++..|+.+|.+.++.+.  .++.+++.++.+|++-+.
T Consensus       169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~i  226 (358)
T TIGR03451       169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHTV  226 (358)
T ss_pred             HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence            345567778776666 4688999999999999987444442  346678888899996444

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08293 PTGR2 Prostaglandin reductase

Probab=81.69  E-value=28  Score=30.60  Aligned_cols=60  Identities=27%  Similarity=0.390  Sum_probs=41.2

Q ss_pred             HcCCCCCC--ceEEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHH-CCCEEEEECC
Q 025113           61 DKGLITPG--KTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRA-LGAEIILADS  123 (257)
Q Consensus        61 ~~g~~~~g--~~~vv~~ssGN~~~alA~~a~~~g~-~~~i~vp~~~~~~~~~~l~~-~Ga~v~~~~~  123 (257)
                      +.+.+++|  .+.+|.+.+|..|.++...|+.+|. +++++.+   ++.+.+.++. +|++-+....
T Consensus       146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~~  209 (345)
T cd08293         146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINYK  209 (345)
T ss_pred             HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEECC
Confidence            34455655  5666777779999999999999998 5555433   4556677665 8997655443

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=81.61  E-value=27  Score=31.16  Aligned_cols=59  Identities=17%  Similarity=0.210  Sum_probs=43.3

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HCCCEEEEEC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGAEIILAD  122 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~-~~Ga~v~~~~  122 (257)
                      +.+.+++|.+.+|.+.+|..|.++...|+.+|.+++++.   .++.+.+.++ .+|++-+.-.
T Consensus       152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~~  211 (348)
T PLN03154        152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFNY  211 (348)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEEC
Confidence            345677887777777789999999999999999855432   3556777776 7999755543

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=81.34  E-value=25  Score=30.99  Aligned_cols=74  Identities=24%  Similarity=0.252  Sum_probs=54.0

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeC-CCCCHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHHHHhCC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP-STCSMERRIVLRALG-AEIILADSALRFEEILEKGEEILKKTP  142 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp-~~~~~~~~~~l~~~G-a~v~~~~~~~~~~~~~~~~~~~~~~~~  142 (257)
                      |...++|++++-.|+++|.-.+++|.+..++== .....+..+.++..| ++-+.++-+ +.++..+.+++..++.+
T Consensus        38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEVG  113 (300)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence            356788999999999999999999984444322 234566777777777 455666753 57888888999888874

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=81.31  E-value=17  Score=29.22  Aligned_cols=121  Identities=21%  Similarity=0.139  Sum_probs=73.4

Q ss_pred             eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCC
Q 025113           70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ  149 (257)
Q Consensus        70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (257)
                      .+|..-..|+-|+++|-.++.+|.+++.+-|...+..   .....|.+.   .   ++++..       ++. +...+.-
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~---~---~l~ell-------~~a-Div~~~~   99 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY---V---SLDELL-------AQA-DIVSLHL   99 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE---S---SHHHHH-------HH--SEEEE-S
T ss_pred             CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee---e---ehhhhc-------chh-hhhhhhh
Confidence            4577788999999999999999999999888754433   233344421   1   244332       332 4444433


Q ss_pred             CCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHH--HHHHHHHhcCCCcEEEEEeCCCCccc
Q 025113          150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT--GAGRFLKENNPDIKVYGVEPSESAVL  215 (257)
Q Consensus       150 ~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~a--Gi~~~~k~~~~~~~vigv~~~~~~~~  215 (257)
                      -.++.+    ...+..|.++++  +++.+++-+|-|+.+-  .+..++++  .+..-.+.+....-++
T Consensus       100 plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV~~~EP~  159 (178)
T PF02826_consen  100 PLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES--GKIAGAALDVFEPEPL  159 (178)
T ss_dssp             SSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS-SSSSS
T ss_pred             cccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh--ccCceEEEECCCCCCC
Confidence            223332    345567888888  4789999999998764  45555554  3455556655554333

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=81.26  E-value=21  Score=31.98  Aligned_cols=59  Identities=19%  Similarity=0.324  Sum_probs=41.8

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +...+++|.+.+|.+ .|..|.+++..|+.+|.+.++.+.  .++.+++.++.+|++.....
T Consensus       185 ~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i~~  243 (371)
T cd08281         185 NTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATVNA  243 (371)
T ss_pred             hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEeCC
Confidence            445677777766654 689999999999999985444432  45678888889999654433

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=81.06  E-value=29  Score=30.67  Aligned_cols=59  Identities=24%  Similarity=0.372  Sum_probs=43.5

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +...+.+|.+.+| ...|..|.++...|+.+|.+.++.+..  ++.+...++.+|++.+...
T Consensus       168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~~~  226 (350)
T cd08256         168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVLNP  226 (350)
T ss_pred             HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEecC
Confidence            4566777766555 667999999999999999887666554  3567778888998655433

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=80.40  E-value=32  Score=32.76  Aligned_cols=50  Identities=18%  Similarity=0.221  Sum_probs=40.2

Q ss_pred             eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      .+|+....|..|++....|+.+|-.+++ +  +..+.++++.+.+|++.+.++
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a-~--D~~~~rle~aeslGA~~v~i~  215 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSLGAIVRA-F--DTRPEVAEQVESMGAEFLELD  215 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEE-E--eCCHHHHHHHHHcCCeEEEec
Confidence            4588899999999999999999985333 2  356788999999999976555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	257
1z7w_A	322	Crystal Structure Of O-Acetylserine Sulfhydrylase F		8e-78
2isq_A	320	Crystal Structure Of O-Acetylserine Sulfhydrylase F		1e-77
1z7y_A	322	Crystal Structure Of The Arabidopsis Thaliana O-Ace		3e-77
4aec_A	430	Crystal Structure Of The Arabidopsis Thaliana O-Ace		4e-74
3vbe_A	344	Crystal Structure Of Beta-Cyanoalanine Synthase In		7e-67
3vc3_A	344	Crystal Structure Of Beta-Cyanoalanine Synthase K95		4e-66
2q3d_A	313	2.2 A Resolution Crystal Structure Of O-acetylserin		2e-48
3rr2_A	314	Structure Of A Cysteine Synthase (O-Acetylserine Su		5e-48
2q3b_A	313	1.8 A Resolution Crystal Structure Of O-Acetylserin		7e-48
4i1y_A	314	The Structure Of Cysteine Synthase From Mycobacteri		2e-47
2egu_A	308	Crystal Structure Of O-Acetylserine Sulfhydrase Fro		9e-46
1ve1_A	304	Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfh		2e-45
1oas_A	322	O-Acetylserine Sulfhydrylase From Salmonella Typhim		3e-43
1d6s_A	322	Crystal Structure Of The K41a Mutant Of O-Acetylser		1e-42
4air_A	354	Leishmania Major Cysteine Synthase Length = 354		2e-41
3t4p_A	334	Crystal Structure Of O-Acetyl Serine Sulfhydrylase		4e-41
2bhs_A	303	Crystal Structure Of Cysteine Synthase B Length = 3		1e-40
2bht_A	303	Crystal Structure Of O-Acetylserine Sulfhydrylase B		4e-40
2jc3_A	303	Structure Of O-acetylserine Sulfhydrylase B From Sa		6e-40
2v03_A	303	High Resolution Structure And Catalysis Of An O- Ac		7e-40
1m54_A	363	Cystathionine-Beta Synthase: Reduced Vicinal Thiols		6e-35
1jbq_A	435	Structure Of Human Cystathionine Beta-Synthase: A U		1e-34
3fca_A	291	Genetic Incorporation Of A Metal-Ion Chelating Amin		2e-33
3pc2_A	527	Full Length Structure Of Cystathionine Beta-Synthas		4e-33
1o58_A	303	Crystal Structure Of O-Acetylserine Sulfhydrylase (		4e-33
1y7l_A	316	O-Acetylserine Sulfhydrylase Complex Length = 316		3e-32
3dwg_A	325	Crystal Structure Of A Sulfur Carrier Protein Compl		2e-29
3dwi_A	323	Crystal Structure Of Mycobacterium Tuberculosis Cys		7e-29
3dki_A	326	2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobac		8e-29
3bm5_A	338	Crystal Structure Of O-Acetyl-Serine Sulfhydrylase		3e-28
2pqm_A	343	Crystal Structure Of Cysteine Synthase (Oass) From		3e-28
1wkv_A	389	Crystal Structure Of O-Phosphoserine Sulfhydrylase		3e-05
1tdj_A	514	Threonine Deaminase (Biosynthetic) From E. Coli Len		7e-05
3vsc_A	389	Crystal Structure Of The K127a Mutant Of O-Phosphos		1e-04
4d9k_A	398	Crystal Structure Of Escherichia Coli Diaminopropio		3e-04
4d9m_A	398	Crystal Structure Of Diaminopropionate Ammonia Lyas		3e-04
4d9i_A	398	Crystal Structure Of Holo Diaminopropionate Ammonia		3e-04
1ve5_A	311	Crystal Structure Of T.Th. Hb8 Threonine Deaminase		5e-04

>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana Length = 322

Iteration: 1
 Score =  286 bits (732), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 133/215 (61%), Positives = 161/215 (74%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI 
Sbjct: 5   IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A  
Sbjct: 65  PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                         TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S      
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                 ++LKE N ++K+YGVEP ESA+L+GG+ G
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219

>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana In Complex With C-Terminal Peptide From Arabidopsis Serine Acetyltransferase Length = 320

Iteration: 1
 Score =  286 bits (731), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 133/215 (61%), Positives = 161/215 (74%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI 
Sbjct: 3   IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A  
Sbjct: 63  PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                         TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S      
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                 ++LKE N ++K+YGVEP ESA+L+GG+ G
Sbjct: 183 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 217

>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetylserine Sulfhydrylase K46a Mutant Length = 322

Iteration: 1
 Score =  284 bits (726), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 132/215 (61%), Positives = 160/215 (74%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSV DRI +SMI DAE KGLI 
Sbjct: 5   IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGLIK 64
Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A  
Sbjct: 65  PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                         TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S      
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                 ++LKE N ++K+YGVEP ESA+L+GG+ G
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219

>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl- Serine-(Thiol)-Lyase C Length = 430

Iteration: 1
 Score =  274 bits (700), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 127/219 (57%), Positives = 158/219 (72%)
Query: 3   DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
           D   I  +V++LIG TPMVYLN++  GCVA IAAKLE MEPC SVKDRI YSM+ DAE K
Sbjct: 109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQK 168
Query: 63  GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
           G I+PGK+ L+E TSGNTG+GLAFIAA+RGY LI+ MP++ SMERR++L+A GAE++L D
Sbjct: 169 GFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTD 228
Query: 123 SALRFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXX 182
            A                TPD Y+L+QF+NPANPKIHYETTGPEIW D+ GKVD F++  
Sbjct: 229 PAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGI 288
Query: 183 XXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                     RF+KE NP  +V GVEP+ES +L+GG+ G
Sbjct: 289 GTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327

>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean Length = 344

Iteration: 1
 Score =  249 bits (637), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 152/215 (70%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           IK+ V++LIG TP+VYLN V +GC A +A K E M+P +S+KDR AY+MI DAE+K LIT
Sbjct: 25  IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLIT 84
Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PGKTTLIE TSGN G+ +AF+AA +GY +++ MPS  S+ERR+ +RA GAE+IL D A  
Sbjct: 85  PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                         TP+ ++L+QF NPAN ++H+ETTGPEIW+D+ G+VD F+       
Sbjct: 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGG 204
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                 ++LK  NP++K+YGVEPSES VLNGG+ G
Sbjct: 205 TVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPG 239

>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a Mutant In Soybean Length = 344

Iteration: 1
 Score =  247 bits (631), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 112/215 (52%), Positives = 151/215 (70%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           IK+ V++LIG TP+VYLN V +GC A +A K E M+P +S+ DR AY+MI DAE+K LIT
Sbjct: 25  IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLIT 84
Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PGKTTLIE TSGN G+ +AF+AA +GY +++ MPS  S+ERR+ +RA GAE+IL D A  
Sbjct: 85  PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                         TP+ ++L+QF NPAN ++H+ETTGPEIW+D+ G+VD F+       
Sbjct: 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGG 204
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                 ++LK  NP++K+YGVEPSES VLNGG+ G
Sbjct: 205 TVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPG 239

>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine Sulfhydrylase (oass) From Mycobacterium Tuberculosis In Complex With The Reaction Intermediate Alpha-aminoacrylate Length = 313

Iteration: 1
 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 129/216 (59%), Gaps = 1/216 (0%)
Query: 6   AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
           +I  D+T+LIG TP+V L  V DG VA I AKLE   P +SVKDRI  +M++ AE  GLI
Sbjct: 5   SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
            P  T ++E TSGNTG+ LA + AARGY  ++ MP T S+ERR++LRA GAE+IL   A 
Sbjct: 65  KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
                              ++ +QFENPANP IH  TT  E+W+D+ GKVD  ++     
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                  + +KE  P  +   VEP+ S VL+GGQ+G
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKG 219

>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc Baa-535 M Length = 314

Iteration: 1
 Score =  187 bits (475), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 93/215 (43%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I  ++T+LIG TP+V L  V DG  A + AKLE+  P  S+KDRI  +MI  AE  GLI 
Sbjct: 7   IAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           P  T ++E TSGNTG+ LA ++AARGY  ++ MP T S+ERR++LRA GAE++L   A  
Sbjct: 67  P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEG 125
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                             ++ +QFENPANP +H  TT  E+W+D+ GKVD F+S      
Sbjct: 126 MAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGG 185
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                 + +K+  P  +   VEP+ S VL+GGQ+G
Sbjct: 186 TITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKG 220

>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine Sulfhydrylase (Oass) Holoenzyme From Mycobacterium Tuberculosis Length = 313

Iteration: 1
 Score =  187 bits (474), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 128/216 (59%), Gaps = 1/216 (0%)
Query: 6   AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
           +I  D+T+LIG TP+V L  V DG VA I AKLE   P +SV DRI  +M++ AE  GLI
Sbjct: 5   SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLI 64
Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
            P  T ++E TSGNTG+ LA + AARGY  ++ MP T S+ERR++LRA GAE+IL   A 
Sbjct: 65  KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
                              ++ +QFENPANP IH  TT  E+W+D+ GKVD  ++     
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                  + +KE  P  +   VEP+ S VL+GGQ+G
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKG 219

>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium Ulcerans Agy99 Length = 314

Iteration: 1
 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 127/215 (59%), Gaps = 1/215 (0%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I  ++ +LIG TP+V L  V DG  A + AKLE+  P  S+KDRI  +MI  AE  GLI 
Sbjct: 7   IAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           P  T ++E TSGNTG+ LA ++AARGY  ++ MP T S+ERR++LRA GAE++L   A  
Sbjct: 67  P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEG 125
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                             ++ +QFENPANP +H  TT  E+W+D+ GKVD F+S      
Sbjct: 126 MAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGG 185
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                 + +K+  P  +   VEP+ S VL+GGQ+G
Sbjct: 186 TITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKG 220

>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From Geobacillus Kaustophilus Hta426 Length = 308

Iteration: 1
 Score =  180 bits (456), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 99/212 (46%), Positives = 134/212 (63%), Gaps = 4/212 (1%)
Query: 11  VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
           +TELIG+TP V LN +VD   A +  KLE M P SSVKDRIA +MI+ AE  G + PG T
Sbjct: 8   ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 71  TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXX 130
            ++E TSGNTG+GLA +AAA+GY  ++VMP T S+ERR +LRA GAE++L   A      
Sbjct: 68  -IVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 131 XXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXX 189
                        GY + +QF+N ANP+IH  TTG EI +  G ++DAF++         
Sbjct: 127 IAKAEELVRE--HGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTIT 184
Query: 190 XXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
              + L+E  P+IK+Y VEP++S VL+GG+ G
Sbjct: 185 GAGKVLREAYPNIKIYAVEPADSPVLSGGKPG 216

>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfhydrylase Length = 304

Iteration: 1
 Score =  179 bits (453), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/212 (44%), Positives = 130/212 (61%), Gaps = 2/212 (0%)
Query: 15  IGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK-TTLI 73
           IG TP+V L  VV+  +A +  KLE + P  S+KDR A+ MIKDAE++G++ PG    ++
Sbjct: 7   IGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIV 66
Query: 74  EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXX 133
           E TSGNTG+GLA IAA+RGY LI+ MP+  S ER+ VL+A GAE++L D   R       
Sbjct: 67  EPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE 126
Query: 134 XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXXR 193
                      ++  QF+NPAN + HYETTGPE+++   G++DAF+             R
Sbjct: 127 ALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGR 185
Query: 194 FLKENNPDIKVYGVEPSESAVLNGGQRGLFIF 225
           +LKE  P +KV  VEP+ S VL+GG+ G   F
Sbjct: 186 YLKERIPHVKVIAVEPARSNVLSGGKMGQHGF 217

>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium Length = 322

Iteration: 1
 Score =  171 bits (434), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 94/212 (44%), Positives = 130/212 (61%), Gaps = 7/212 (3%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I  D +  IG+TP+V LN + +G   RI AK+E+  P  SVK RI  +MI DAE +G++ 
Sbjct: 3   IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PG   L+E T+GNTG+ LA++AAARGY L + MP T S+ERR +L+ALGA ++L + A  
Sbjct: 60  PG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 127 FXXXXXXXXXXXXXTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
                          P  Y LL+QF NPANP+IH +TTGPEIW+D+ G+VD FIS     
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 186 XXXXXXXRFLK--ENNPDIKVYGVEPSESAVL 215
                  R++K  +   D+    VEP++S V+
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVI 210

>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine Sulfhydrylase Complexed In External Aldimine Linkage With Methionine Length = 322

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/212 (43%), Positives = 129/212 (60%), Gaps = 7/212 (3%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I  D +  IG+TP+V LN + +G   RI AK+E+  P  SV  RI  +MI DAE +G++ 
Sbjct: 3   IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGVLK 59
Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PG   L+E T+GNTG+ LA++AAARGY L + MP T S+ERR +L+ALGA ++L + A  
Sbjct: 60  PG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 127 FXXXXXXXXXXXXXTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
                          P  Y LL+QF NPANP+IH +TTGPEIW+D+ G+VD FIS     
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 186 XXXXXXXRFLK--ENNPDIKVYGVEPSESAVL 215
                  R++K  +   D+    VEP++S V+
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVI 210

>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase Length = 354

Iteration: 1
 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/215 (39%), Positives = 122/215 (56%), Gaps = 1/215 (0%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           + + + +LIG TP +YLN + +   A++  K+E   P +SVKDR+ +++   AE +G + 
Sbjct: 32  VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 90
Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PGK+ ++E +SGNTGV LA + A RGY +II MP + S+ERR +LR  GAE+IL  +AL 
Sbjct: 91  PGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 150
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                          P+  L  QF    N  IH ETTGPEIW+ +   VD FI+      
Sbjct: 151 MKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 210
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                 R LK+     ++  VEP ES VL+GG+ G
Sbjct: 211 TLTGVARALKKMGSHARIVAVEPMESPVLSGGKPG 245

>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From Leishmania Donovani In Complex With Designed Tetrapeptide Length = 334

Iteration: 1
 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 122/215 (56%), Gaps = 1/215 (0%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           + + + +LIG TP +YLN + +   A++  K+E   P +SV DR+ +++   AE +G + 
Sbjct: 11  VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKLI 69
Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PGK+ ++E +SGNTGV LA + A RGY +II MP + S+ERR +LR  GAE+IL  +AL 
Sbjct: 70  PGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
                          P+  L  QF    N  IH ETTGPEIW+ +   VD FI+      
Sbjct: 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 189
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                 R LK+     ++  VEP+ES VL+GG+ G
Sbjct: 190 TLTGVARALKKMGSHARIVAVEPTESPVLSGGKPG 224

>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B Length = 303

Iteration: 1
 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/234 (39%), Positives = 130/234 (55%), Gaps = 5/234 (2%)
Query: 13  ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
           + IGNTP+V L  +     + +  KLE   P  SVKDR A SMI +AE +G I PG   L
Sbjct: 6   QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-L 64
Query: 73  IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
           IE TSGNTG+ LA IAA +GY + ++MP   S ERR  +RA GAE+IL  +  +      
Sbjct: 65  IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
                     +G LL QF NP NP  HY TTGPEIWQ +GG++  F+S            
Sbjct: 124 DLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHN 246
           RF++E +  + + G++P E + + G +R    ++  +F +  LVD+  V+ +H 
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNA-SLVDE--VLDIHQ 234

>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B Length = 303

Iteration: 1
 Score =  161 bits (407), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/234 (38%), Positives = 129/234 (55%), Gaps = 5/234 (2%)
Query: 13  ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
           + IGNTP+V L  +     + +  KLE   P  SV DR A SMI +AE +G I PG   L
Sbjct: 6   QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGDV-L 64
Query: 73  IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
           IE TSGNTG+ LA IAA +GY + ++MP   S ERR  +RA GAE+IL  +  +      
Sbjct: 65  IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
                     +G LL QF NP NPK HY TTGPEIWQ +GG++  F+S            
Sbjct: 124 DLALEMANRGEGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHN 246
            F++E +  + + G++P E + + G +R    ++  +F +  LVD+  V+ +H 
Sbjct: 184 EFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNA-SLVDE--VLDIHQ 234

>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From Salmonella Typhimurium Length = 303

Iteration: 1
 Score =  160 bits (405), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 91/234 (38%), Positives = 128/234 (54%), Gaps = 3/234 (1%)
Query: 13  ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
           + IGNTP+V L  +     + I  KLE   P  SVKDR A SMI +AE +G I PG   L
Sbjct: 6   QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-L 64
Query: 73  IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
           IE TSGNTG+ LA IAA +GY + ++MP   S ERR  +RA GAE+IL  +  +      
Sbjct: 65  IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
                     +G LL QF NP NP  HY TTGPEIW+ + G++  F+S            
Sbjct: 124 DLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHN 246
           RFL+E    + + G++P E + + G +R    ++  +F +  LVD+   +H ++
Sbjct: 184 RFLREQEKPVTIVGLQPEEGSSIPGIRRWPAEYMPGIFNA-SLVDEVLDIHQND 236

>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O- Acetylserine Sulfhydrylase Length = 303

Iteration: 1
 Score =  160 bits (405), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 91/234 (38%), Positives = 129/234 (55%), Gaps = 5/234 (2%)
Query: 13  ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
           + IGNTP+V L  +     + +  KLE   P  SV DR A SMI +AE +G I PG   L
Sbjct: 6   QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGDV-L 64
Query: 73  IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
           IE TSGNTG+ LA IAA +GY + ++MP   S ERR  +RA GAE+IL  +  +      
Sbjct: 65  IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
                     +G LL QF NP NP  HY TTGPEIWQ +GG++  F+S            
Sbjct: 124 DLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHN 246
           RF++E +  + + G++P E + + G +R    ++  +F +  LVD+  V+ +H 
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNA-SLVDE--VLDIHQ 234

>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols Length = 363

Iteration: 1
 Score =  144 bits (362), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/208 (41%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 10  DVTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITP 67
           D+ + IG+TPMV +N +    G    + AK E      SVKDRI+  MI+DAE  G + P
Sbjct: 36  DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKP 95
Query: 68  GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
           G T +IE TSGNTG+GLA  AA RGY  IIVMP   S E+  VLRALGAEI+   +  RF
Sbjct: 96  GDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 154
Query: 128 XXXXX---XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXX 184
                            P+ ++L Q+ N +NP  HY+TT  EI Q   GK+D  ++    
Sbjct: 155 DSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGT 214
Query: 185 XXXXXXXXRFLKENNPDIKVYGVEPSES 212
                   R LKE  P  ++ GV+P  S
Sbjct: 215 GGTITGIARKLKEKCPGCRIIGVDPEGS 242

>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'- Phosphate Dependent Hemeprotein Length = 435

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/208 (41%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 10  DVTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITP 67
           D+ + IG+TPMV +N +    G    + AK E      SVKDRI+  MI+DAE  G + P
Sbjct: 101 DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKP 160
Query: 68  GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
           G T +IE TSGNTG+GLA  AA RGY  IIVMP   S E+  VLRALGAEI+   +  RF
Sbjct: 161 GDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 219
Query: 128 XXXXXX---XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXX 184
                            P+ ++L Q+ N +NP  HY+TT  EI Q   GK+D  ++    
Sbjct: 220 DSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGT 279
Query: 185 XXXXXXXXRFLKENNPDIKVYGVEPSES 212
                   R LKE  P  ++ GV+P  S
Sbjct: 280 GGTITGIARKLKEKCPGCRIIGVDPEGS 307

>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid Into Proteins As Biophysical Probe Length = 291

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 14  LIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
           LIG+TP+V L    D   +RI  KLE   P  SVKDR A  MI DAE +GL+   K  ++
Sbjct: 5   LIGSTPIVRL----DSIDSRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLL---KNGIV 57
Query: 74  EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXX 133
           E TSGN G+ +A I A RG+ +I+ MP T S+ERR VL+ LGAE++L    L        
Sbjct: 58  EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEK 117
Query: 134 XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXXR 193
                  T   ++L QFENP N   H  TTGPEI +    ++DAF++            R
Sbjct: 118 ALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGR 176
Query: 194 FLKE-NNPDIKVYGVEPSESAVLNGGQRG 221
            LK      +K+  VEP++S VL+GGQ G
Sbjct: 177 VLKGFFGNGVKIVAVEPAKSPVLSGGQPG 205

>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From Drosophila Length = 527

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 110/208 (52%), Gaps = 6/208 (2%)
Query: 7   IKRDVTELIGNTPMVYLNNV--VDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGL 64
           I  ++ E+IG TP+V LNN+   DG    + AK E + P  SVKDRI Y M++DAE++GL
Sbjct: 50  ITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGL 109
Query: 65  ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124
           + PG  T+IE TSGNTG+GLA   A +GY  IIVMP   S E+   LR LGA+II   + 
Sbjct: 110 LKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTE 168
Query: 125 LRFXXXXX---XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISX 181
             +                TP+  +L Q+ N  NP  HY+ T  EI      KVD  +  
Sbjct: 169 AAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVS 228
Query: 182 XXXXXXXXXXXRFLKENNPDIKVYGVEP 209
                      R +KE  P  ++ GV+P
Sbjct: 229 AGTAGTISGIGRKIKEQVPSCQIVGVDP 256

>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665) From Thermotoga Maritima At 1.80 A Resolution Length = 303

Iteration: 1
 Score =  137 bits (346), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 14  LIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
           LIG+TP+V L    D   +RI  KLE   P  SVKDR A  MI DAE +GL+   K  ++
Sbjct: 17  LIGSTPIVRL----DSIDSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLL---KNGIV 69
Query: 74  EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXX 133
           E TSGN G+ +A I A RG+ +I+ MP T S+ERR VL+ LGAE++L    L        
Sbjct: 70  EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEK 129
Query: 134 XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXXR 193
                  T   ++L QFENP N   H  TTGPEI +    ++DAF++            R
Sbjct: 130 ALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGR 188
Query: 194 FLKE-NNPDIKVYGVEPSESAVLNGGQRG 221
            LK      +K+  VEP++S VL+GGQ G
Sbjct: 189 VLKGFFGNGVKIVAVEPAKSPVLSGGQPG 217

>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex Length = 316

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 118/213 (55%), Gaps = 5/213 (2%)
Query: 6   AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
           AI  D +  IGNTP+V L +   G    +  K+E   P  SV  RI  +M+  AE  G +
Sbjct: 2   AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTL 59
Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
           T GK  +++ TSGNTG+ LA++AAARGY + + MP T S+ER+ +L  LG  ++L + A 
Sbjct: 60  TKGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 126 RFXXXXXXXXXXXXXTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXX 184
                           P  Y +L+QFENPANP+IH ETTGPEIW+D+ GKVD  ++    
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 185 XXXXXXXXRFLKEN-NPDIKVYGVEPSESAVLN 216
                   R +K +    I    VEP ES V++
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVIS 211

>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex Found In The Cysteine Biosynthetic Pathway Of Mycobacterium Tuberculosis Length = 325

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 105/204 (51%), Gaps = 9/204 (4%)
Query: 13  ELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
           + +GNTP+V L  +        DG   R+ AKLE   P  S+KDR A  MI+ AE  GL+
Sbjct: 11  QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
            PG  T++E TSGNTG+ LA  A  +GY LI VMP   S+ERR +L   GA+II + +  
Sbjct: 71  RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 129
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
                           P   +L Q+ NPAN   HY  TGPE+  D   ++  F++     
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 188
Query: 186 XXXXXXXRFLKENNPDIKVYGVEP 209
                  RFL+E+  ++K+   EP
Sbjct: 189 GTLMGTGRFLREHVANVKIVAAEP 212

>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The Cysteine Synthase B Length = 323

Iteration: 1
 Score =  124 bits (310), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 104/204 (50%), Gaps = 9/204 (4%)
Query: 13  ELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
           + +GNTP+V L  +        DG   R+ AKLE   P  S+KDR A  MI+ AE  GL+
Sbjct: 9   QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
            PG  T++E TSGNTG+ LA  A  +GY LI VMP   S+ERR +L   GA+II + +  
Sbjct: 69  RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 127
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
                           P   +L Q+ NPAN   HY  TGPE+  D   ++  F++     
Sbjct: 128 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 186
Query: 186 XXXXXXXRFLKENNPDIKVYGVEP 209
                  RFL+E+  ++ +   EP
Sbjct: 187 GTLMGTGRFLREHVANVAIVAAEP 210

>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium Tuberculosis An O-Phosphoserine Dependent Cysteine Synthase Length = 326

Iteration: 1
 Score =  123 bits (309), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 104/204 (50%), Gaps = 9/204 (4%)
Query: 13  ELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
           + +GNTP+V L  +        DG   R+ AKLE   P  S+ DR A  MI+ AE  GL+
Sbjct: 12  QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
            PG  T++E TSGNTG+ LA  A  +GY LI VMP   S+ERR +L   GA+II + +  
Sbjct: 72  RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 130
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
                           P   +L Q+ NPAN   HY  TGPE+  D   ++  F++     
Sbjct: 131 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 189
Query: 186 XXXXXXXRFLKENNPDIKVYGVEP 209
                  RFL+E+  ++K+   EP
Sbjct: 190 GTLMGTGRFLREHVANVKIVAAEP 213

>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From Entamoeba Histolytica In Complex With Cysteine Length = 338

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 113/220 (51%), Gaps = 7/220 (3%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCV----ARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
           I  ++ E IG TP+V L+ V +        RI  KLE   P SSVKDR+ ++++  A   
Sbjct: 12  IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 71
Query: 63  GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
           G + PG   +IE TSGNTG+ L    A  GY + I MPST S+ER+++++A GAE+IL +
Sbjct: 72  GRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 130
Query: 123 SALRFXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISX 181
                              P  Y +  QF NP N   H+ T   EIW+D+ G+VD  +S 
Sbjct: 131 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSA 189
Query: 182 XXXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                        LKE    IK+  VEP ESAVL G  +G
Sbjct: 190 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKG 229

>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From Entamoeba Histolytica At 1.86 A Resolution Length = 343

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 113/220 (51%), Gaps = 7/220 (3%)
Query: 7   IKRDVTELIGNTPMVYLNNVVD----GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
           I  ++ E IG TP+V L+ V +        RI  KLE   P SSVKDR+ ++++  A   
Sbjct: 13  IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 72
Query: 63  GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
           G + PG   +IE TSGNTG+ L    A  GY + I MPST S+ER+++++A GAE+IL +
Sbjct: 73  GRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 131
Query: 123 SALRFXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISX 181
                              P  Y +  QF NP N   H+ T   EIW+D+ G+VD  +S 
Sbjct: 132 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSA 190
Query: 182 XXXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
                        LKE    IK+  VEP ESAVL G  +G
Sbjct: 191 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKG 230

>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Length = 389

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 10/193 (5%)
Query: 33  RIAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91
           R+  KLE   P S SVKDR A  +I     +  +  G + + + TS N GV L+ +A   
Sbjct: 111 RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLY 167
Query: 92  GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXXXXXXXXXTPDGYL-LRQF 150
           GY   + +P       +++ R LGA++I+   A                  +G++ + QF
Sbjct: 168 GYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP--STVHLLPRVMKDSKNEGFVHVNQF 225
Query: 151 ENPANPKIHYETTGPEIWQDS---GGKVDAFISXXXXXXXXXXXXRFLKENNPDIKVYGV 207
            N AN + H   T  EI+  S   G  +                  +L+  +P I+   V
Sbjct: 226 YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLV 285
Query: 208 EPSESAVLNGGQR 220
           +P++   + G +R
Sbjct: 286 QPAQGDSIPGIRR 298

>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli Length = 514

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           ++  V E    TP+  +  +       I  K E  +P  S K R AY+M+      GL  
Sbjct: 21  LRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMA-----GLTE 75
Query: 67  PGKTT-LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
             K   +I  ++GN   G+AF +A  G   +IVMP+  +  +   +R  G E++L
Sbjct: 76  EQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL 130

>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine Sulfhydrylase Complexed With External Schiff Base Of Pyridoxal 5'-Phosphate With O- Phospho-L-Serine Length = 389

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 10/193 (5%)
Query: 33  RIAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91
           R+  KLE   P S SV DR A  +I     +  +  G + + + TS N GV L+ +A   
Sbjct: 111 RVWLKLEWYNPFSLSVADRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLY 167
Query: 92  GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXXXXXXXXXTPDGYL-LRQF 150
           GY   + +P       +++ R LGA++I+   A                  +G++ + QF
Sbjct: 168 GYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP--STVHLLPRVMKDSKNEGFVHVNQF 225
Query: 151 ENPANPKIHYETTGPEIWQDS---GGKVDAFISXXXXXXXXXXXXRFLKENNPDIKVYGV 207
            N AN + H   T  EI+  S   G  +                  +L+  +P I+   V
Sbjct: 226 YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLV 285
Query: 208 EPSESAVLNGGQR 220
           +P++   + G +R
Sbjct: 286 QPAQGDSIPGIRR 298

>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate Ammonia Lyase In Apo Form Length = 398

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 69  KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
           K T    T GN G G+A+ A   G N +I MP   + ER   +  LGAE I+ D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165

>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From Escherichia Coli In Complex With Aminoacrylate-Plp Azomethine Reaction Intermediate Length = 398

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 69  KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
           K T    T GN G G+A+ A   G N +I MP   + ER   +  LGAE I+ D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165

>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase From Escherichia Coli Length = 398

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 69  KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
           K T    T GN G G+A+ A   G N +I MP   + ER   +  LGAE I+ D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165

>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase Length = 311

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
           ++D  A  R +      TP++    +      R+  K E ++   S K R A S      
Sbjct: 4   LQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALS------ 57
Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119
            K L       L+ V+SGN   G+A+ A   G   ++VMP   S  ++   RA GAE++
Sbjct: 58  -KALALENPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	1e-141
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	1e-140
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	1e-138
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	1e-138
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	1e-134
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	1e-131
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	1e-130
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	1e-127
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	1e-126
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	1e-122
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	1e-115
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	1e-109
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	1e-109
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	1e-108
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	2e-17
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	2e-17
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	4e-17
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	1e-16
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	2e-16
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	4e-16
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	8e-16
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	1e-15
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	3e-15
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	5e-14
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	6e-14
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	7e-14
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	1e-13
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	2e-13
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	4e-04

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322

 Score =  397 bits (1023), Expect = e-141
 Identities = 150/215 (69%), Positives = 181/215 (84%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI 
Sbjct: 5   IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A  
Sbjct: 65  PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124

Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
            +  + K EEIL KTP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+SGIGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184

Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           T+TGAG++LKE N ++K+YGVEP ESA+L+GG+ G
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Length = 430

 Score =  399 bits (1028), Expect = e-140
 Identities = 142/215 (66%), Positives = 176/215 (81%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I  +V++LIG TPMVYLN++  GCVA IAAKLE MEPC SVKDRI YSM+ DAE KG I+
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PGK+ L+E TSGNTG+GLAFIAA+RGY LI+ MP++ SMERR++L+A GAE++L D A  
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232

Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
               ++K EEILK TPD Y+L+QF+NPANPKIHYETTGPEIW D+ GKVD F++GIGTGG
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292

Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           T+TG GRF+KE NP  +V GVEP+ES +L+GG+ G
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A* Length = 334

 Score =  391 bits (1008), Expect = e-138
 Identities = 94/215 (43%), Positives = 139/215 (64%), Gaps = 1/215 (0%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           + + + +LIG TP +YLN + +   A++  K+E   P +SVKDR+ +++   AE +G + 
Sbjct: 11  VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 69

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PGK+ ++E +SGNTGV LA + A RGY +II MP + S+ERR +LR  GAE+IL  +AL 
Sbjct: 70  PGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129

Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
            +  +   ++I+   P+  L  QF    N  IH ETTGPEIW+ +   VD FI+G+GTGG
Sbjct: 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 189

Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           T+TG  R LK+     ++  VEP+ES VL+GG+ G
Sbjct: 190 TLTGVARALKKMGSHARIVAVEPTESPVLSGGKPG 224

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Length = 313

 Score =  389 bits (1003), Expect = e-138
 Identities = 109/216 (50%), Positives = 145/216 (67%), Gaps = 1/216 (0%)

Query: 6   AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
           +I  D+T+LIG TP+V L  V DG VA I AKLE   P +SVKDRI  +M++ AE  GLI
Sbjct: 5   SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64

Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
            P  T ++E TSGNTG+ LA + AARGY  ++ MP T S+ERR++LRA GAE+IL   A 
Sbjct: 65  KPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123

Query: 126 RFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTG 185
                + K EE+ K     ++ +QFENPANP IH  TT  E+W+D+ GKVD  ++G+GTG
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183

Query: 186 GTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           GT+TG  + +KE  P  +   VEP+ S VL+GGQ+G
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKG 219

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Length = 304

 Score =  378 bits (974), Expect = e-134
 Identities = 106/212 (50%), Positives = 145/212 (68%), Gaps = 2/212 (0%)

Query: 11  VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK- 69
           V   IG TP+V L  VV+  +A +  KLE + P  S+KDR A+ MIKDAE++G++ PG  
Sbjct: 3   VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62

Query: 70  TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE 129
             ++E TSGNTG+GLA IAA+RGY LI+ MP+  S ER+ VL+A GAE++L D   R   
Sbjct: 63  QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122

Query: 130 ILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT 189
             E+    LK+    ++  QF+NPAN + HYETTGPE+++   G++DAF+ G GTGGT+T
Sbjct: 123 AREEALR-LKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181

Query: 190 GAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           G GR+LKE  P +KV  VEP+ S VL+GG+ G
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMG 213

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Length = 316

 Score =  371 bits (955), Expect = e-131
 Identities = 98/218 (44%), Positives = 137/218 (62%), Gaps = 5/218 (2%)

Query: 6   AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
           AI  D +  IGNTP+V L +   G    +  K+E   P  SVK RI  +M+  AE  G +
Sbjct: 2   AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 59

Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
           T GK  +++ TSGNTG+ LA++AAARGY + + MP T S+ER+ +L  LG  ++L + A 
Sbjct: 60  TKGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118

Query: 126 RFEEILEKGEEILKKTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGT 184
             +  + K EEI+   P  Y +L+QFENPANP+IH ETTGPEIW+D+ GKVD  ++G+GT
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178

Query: 185 GGTVTGAGRFLK-ENNPDIKVYGVEPSESAVLNGGQRG 221
           GG++TG  R +K +    I    VEP ES V++    G
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAG 216

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Length = 308

 Score =  368 bits (948), Expect = e-130
 Identities = 110/215 (51%), Positives = 152/215 (70%), Gaps = 2/215 (0%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
               +TELIG+TP V LN +VD   A +  KLE M P SSVKDRIA +MI+ AE  G + 
Sbjct: 4   TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLK 63

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PG  T++E TSGNTG+GLA +AAA+GY  ++VMP T S+ERR +LRA GAE++L   A  
Sbjct: 64  PG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQG 122

Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
               + K EE+++     ++ +QF+N ANP+IH  TTG EI +  G ++DAF++G+GTGG
Sbjct: 123 MRGAIAKAEELVR-EHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGG 181

Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           T+TGAG+ L+E  P+IK+Y VEP++S VL+GG+ G
Sbjct: 182 TITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPG 216

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Length = 343

 Score =  364 bits (936), Expect = e-127
 Identities = 91/220 (41%), Positives = 128/220 (58%), Gaps = 7/220 (3%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCV----ARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
           I  ++ E IG TP+V L+ V +        RI  KLE   P SSVKDR+ ++++  A   
Sbjct: 13  IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 72

Query: 63  GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
           G + PG   +IE TSGNTG+ L    A  GY + I MPST S+ER+++++A GAE+IL +
Sbjct: 73  GRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 131

Query: 123 SALRFEEILEKGEEILKKTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISG 181
                   +E+  +++K+ P  Y +  QF NP N   H+  T  EIW+D+ G+VD  +S 
Sbjct: 132 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGEVDIVVSA 190

Query: 182 IGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           +GT GTV G    LKE    IK+  VEP ESAVL G  +G
Sbjct: 191 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKG 230

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Length = 303

 Score =  359 bits (924), Expect = e-126
 Identities = 94/212 (44%), Positives = 128/212 (60%), Gaps = 2/212 (0%)

Query: 10  DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK 69
            + + IGNTP+V L  +     + +  KLE   P  SVKDR A SMI +AE +G I PG 
Sbjct: 3   TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG- 61

Query: 70  TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE 129
             LIE TSGNTG+ LA IAA +GY + ++MP   S ERR  +RA GAE+IL       E 
Sbjct: 62  DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121

Query: 130 ILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT 189
             +   E+  +   G LL QF NP NP  HY TTGPEIWQ +GG++  F+S +GT GT+T
Sbjct: 122 ARDLALEMANRGE-GKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180

Query: 190 GAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           G  RF++E +  + + G++P E + + G +R 
Sbjct: 181 GVSRFMREQSKPVTIVGLQPEEGSSIPGIRRW 212

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Length = 303

 Score =  348 bits (895), Expect = e-122
 Identities = 97/216 (44%), Positives = 135/216 (62%), Gaps = 9/216 (4%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
               +  LIG+TP+V L+++     +RI  KLE   P  SVKDR A  MI DAE +GL+ 
Sbjct: 10  HHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLK 65

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
            G   ++E TSGN G+ +A I A RG+ +I+ MP T S+ERR VL+ LGAE++L    L 
Sbjct: 66  NG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELG 122

Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
            +  +EK  EI +     ++L QFENP N   H  TTGPEI +    ++DAF++G+GTGG
Sbjct: 123 MKGAVEKALEISR-ETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGG 181

Query: 187 TVTGAGRFLKE-NNPDIKVYGVEPSESAVLNGGQRG 221
           T++G GR LK      +K+  VEP++S VL+GGQ G
Sbjct: 182 TISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPG 217

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325

 Score =  331 bits (851), Expect = e-115
 Identities = 84/215 (39%), Positives = 119/215 (55%), Gaps = 9/215 (4%)

Query: 6   AIKRDVTELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKD 58
                + + +GNTP+V L  +        DG   R+ AKLE   P  S+KDR A  MI+ 
Sbjct: 4   TRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQ 63

Query: 59  AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118
           AE  GL+ PG  T++E TSGNTG+ LA  A  +GY LI VMP   S+ERR +L   GA+I
Sbjct: 64  AEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQI 122

Query: 119 ILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAF 178
           I + +       +   +E+    P   +L Q+ NPAN   HY  TGPE+  D   ++  F
Sbjct: 123 IFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHF 181

Query: 179 ISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213
           ++G+GT GT+ G GRFL+E+  ++K+   EP    
Sbjct: 182 VAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGE 216

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Length = 389

 Score =  320 bits (821), Expect = e-109
 Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 9/215 (4%)

Query: 10  DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPG 68
           D  E    TP+V     +     R+  KLE   P S SVKDR A  +I     +  +  G
Sbjct: 89  DFFERGKPTPLVRSRLQLPNG-VRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145

Query: 69  KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE 128
            + + + TS N GV L+ +A   GY   + +P       +++ R LGA++I+   A    
Sbjct: 146 -SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204

Query: 129 EILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD---SGGKVDAFISGIGTG 185
            +L +  +   K      + QF N AN + H   T  EI+      G  +      +GT 
Sbjct: 205 HLLPRVMK-DSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263

Query: 186 GTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR 220
           G ++ A  +L+  +P I+   V+P++   + G +R
Sbjct: 264 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRR 298

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435

 Score =  320 bits (823), Expect = e-109
 Identities = 96/225 (42%), Positives = 131/225 (58%), Gaps = 11/225 (4%)

Query: 7   IKRDVTELIGNTPMVYLNNVV--DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGL 64
           I  D+ + IG+TPMV +N +    G    + AK E      SVKDRI+  MI+DAE  G 
Sbjct: 98  ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157

Query: 65  ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124
           + PG  T+IE TSGNTG+GLA  AA RGY  IIVMP   S E+  VLRALGAEI+   + 
Sbjct: 158 LKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 216

Query: 125 LRFEE---ILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISG 181
            RF+     +     +  + P+ ++L Q+ N +NP  HY+TT  EI Q   GK+D  ++ 
Sbjct: 217 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 276

Query: 182 IGTGGTVTGAGRFLKENNPDIKVYGVEPSESAV-----LNGGQRG 221
           +GTGGT+TG  R LKE  P  ++ GV+P  S +     LN  ++ 
Sbjct: 277 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQT 321

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score =  321 bits (826), Expect = e-108
 Identities = 91/231 (39%), Positives = 131/231 (56%), Gaps = 11/231 (4%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVV--DGCVARIAAKLETMEPCSSVKDRIAYSMIKD 58
           +     I  ++ E+IG TP+V LNN+   DG    + AK E + P  SVKDRI Y M++D
Sbjct: 44  IAHRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQD 103

Query: 59  AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118
           AE++GL+ PG  T+IE TSGNTG+GLA   A +GY  IIVMP   S E+   LR LGA+I
Sbjct: 104 AEEQGLLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKI 162

Query: 119 ILADSALRFEE---ILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKV 175
           I   +   ++    ++   +++ ++TP+  +L Q+ N  NP  HY+ T  EI      KV
Sbjct: 163 IRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKV 222

Query: 176 DAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAV-----LNGGQRG 221
           D  +   GT GT++G GR +KE  P  ++ GV+P  S +     LN     
Sbjct: 223 DMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQ 273

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 42/226 (18%), Positives = 75/226 (33%), Gaps = 27/226 (11%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIK--- 57
           M   +        L   TP+     +       +  K+++ +P  S K R      K   
Sbjct: 30  MGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWA 89

Query: 58  DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117
                  +          ++GN G+  A+ A   G    IV+P T        L+  GA 
Sbjct: 90  KQGCAHFVCS--------SAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGAT 141

Query: 118 IILADSALRFEEILEKGEEILKKTPDGYLLRQFENP------ANPKIHYETTGPEIWQDS 171
             +       +E  E  + + K  P    +  F++P      A       +   E+ +  
Sbjct: 142 CKVVGEL--LDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHA-------SIVKELKETL 192

Query: 172 GGKVDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSESAVLN 216
             K  A    +G GG + G  + L+E    D+ V  +E   +   +
Sbjct: 193 WEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFH 238

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311

 Score = 78.7 bits (195), Expect = 2e-17
 Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 42/213 (19%)

Query: 18  TPMVY---LNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAED-KGLITPGKTTLI 73
           TP++    L+ ++     R+  K E ++   S K R A S     E+ KGL+        
Sbjct: 21  TPLLTSRLLDGLLG---KRLLLKAEHLQKTGSFKARGALSKALALENPKGLLA------- 70

Query: 74  EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEK 133
            V+SGN   G+A+ A   G   ++VMP   S  ++   RA GAE++        +   E 
Sbjct: 71  -VSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVT--AKNREEV 127

Query: 134 GEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQ---DSGGKVDAFIS 180
              + ++T  GY L          IH ++         T G E+       G    A ++
Sbjct: 128 ARALQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLA 175

Query: 181 GIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213
            +G GG + G    +K  +P   V GVEP  + 
Sbjct: 176 PVGGGGLLAGLATAVKALSPTTLVLGVEPEAAD 208

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323

 Score = 78.3 bits (194), Expect = 4e-17
 Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 43/216 (19%)

Query: 15  IGNTPMVY---LNNVVDGCVARIAAKLETMEPCSSVKDRIAY----SMIKDAEDKGLITP 67
              TP++    +N       A +  K E  +   + K R A      + +     G++T 
Sbjct: 24  ANKTPVLTSSTVNKEFV---AEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLT- 79

Query: 68  GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
                   +SGN    +A  A   G    I+MP      +    +  G ++I+ D     
Sbjct: 80  -------FSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--K 130

Query: 128 EEILEKGEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQDSGGKVDA 177
           ++  +  +EI ++   G  +          I  Y+         T   E++++ G  +DA
Sbjct: 131 DDREKMAKEISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEEVGP-LDA 177

Query: 178 FISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213
               +G GG ++G+    +   P+ +VYGVEP    
Sbjct: 178 LFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGN 213

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318

 Score = 76.8 bits (190), Expect = 1e-16
 Identities = 35/217 (16%), Positives = 72/217 (33%), Gaps = 36/217 (16%)

Query: 14  LIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIK---DAEDKGLITPGKT 70
               TP++    +       +  K E ++P  S K R      +       + L+     
Sbjct: 4   FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRHLVCS--- 60

Query: 71  TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEI 130
                + GN G+  A+ A   G    IV+P + S++    L+  GAE+ L      ++E 
Sbjct: 61  -----SGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKV--WDEA 113

Query: 131 LEKGEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQDSGGKVDA-FI 179
             + +E+ K+   G+            +  ++         +   E+         A  +
Sbjct: 114 NLRAQELAKRD--GWEN----------VPPFDHPLIWKGHASLVQELKAVLRTPPGALVL 161

Query: 180 SGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN 216
           +  G G         L+     + +  +E   +   N
Sbjct: 162 AVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFN 198

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346

 Score = 76.8 bits (190), Expect = 2e-16
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 46/216 (21%)

Query: 18  TPMVY---LNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMI-----KDAEDK--GLITP 67
           TP++    LN +       +  K E  +   S K R A + +        E K   ++T 
Sbjct: 26  TPVLTSSILNQLTG---RNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVT- 81

Query: 68  GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
                   +SGN G  L + A   G    IV+P T    +++ ++A GA I+  + +   
Sbjct: 82  -------HSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--D 132

Query: 128 EEILEKGEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQDSGGKVDA 177
           E      + + ++T    ++          +H  +         T   E+       VDA
Sbjct: 133 ESRENVAKRVTEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQVPL-VDA 179

Query: 178 FISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213
            +  +G GG + G    +K   P +KVY  EPS + 
Sbjct: 180 LVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNAD 215

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398

 Score = 75.2 bits (185), Expect = 8e-16
 Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 14/158 (8%)

Query: 69  KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE 128
           K T    T GN G G+A+ A   G N +I MP   + ER   +  LGAE I+ D    ++
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMN--YD 169

Query: 129 EILEKGEEILKKTPDGYLLRQFENPANPKIH------YETTGPEIWQ---DSGGKVDAFI 179
           + +    +  ++     +++        KI       Y T   E  +   + G      +
Sbjct: 170 DTVRLTMQHAQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVL 228

Query: 180 SGIGTGGTVTGAGRFLKE--NNPDIKVYGVEPSESAVL 215
              G G    G   +L +  +  ++    VEP ++  +
Sbjct: 229 LQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCI 266

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 46/185 (24%), Positives = 71/185 (38%), Gaps = 14/185 (7%)

Query: 16  GNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEV 75
           G TP++   N+       I  K+E + P  S KDR     + DA   G        ++  
Sbjct: 37  GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAVLCA 91

Query: 76  TSGNTGVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKG 134
           ++GNT    A  AA  G    +++P    +M +       GA+II  D    F++ LE  
Sbjct: 92  STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG--NFDDCLELA 149

Query: 135 EEILKKTPDGYLLRQFENPANPKIH--YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAG 192
            ++    P   L+    N  NP      +T   EI    G   D     +G  G +T   
Sbjct: 150 RKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYW 205

Query: 193 RFLKE 197
           +   E
Sbjct: 206 KGYTE 210

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486

 Score = 73.7 bits (181), Expect = 3e-15
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 13/184 (7%)

Query: 16  GNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
           GN+ + +          +  +  K   +    S KD     ++        +      + 
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188

Query: 74  EVTSGNTGVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILE 132
             ++G+T   L+   A+ G   I+ +P+   SM + +   A GA ++  D+   F+  ++
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDGCMK 246

Query: 133 KGEEILKKTPDGYLLRQFENPANPKIH--YETTGPEIWQDSGGKV-DAFISGIGTGGTVT 189
              EI  + P  YL     N  N       +T   EI Q    +V D  I   G  G + 
Sbjct: 247 LIREITAELP-IYLA----NSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIY 301

Query: 190 GAGR 193
              +
Sbjct: 302 AFYK 305

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366

 Score = 69.9 bits (172), Expect = 5e-14
 Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 37/217 (17%)

Query: 11  VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMI----KDAEDKGLIT 66
           V ++   +P+     + D        K E  +   S K R AY+M+    ++  DKG+IT
Sbjct: 54  VYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT 113

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
                    ++GN   G+A           IVMP+T    +   +RALG +++L      
Sbjct: 114 --------ASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKT-- 163

Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQDSGGKVD 176
           F+E      E+ +K   G             I  ++         T G EI +     + 
Sbjct: 164 FDEAQTHALELSEKD--GLKY----------IPPFDDPGVIKGQGTIGTEINRQLK-DIH 210

Query: 177 AFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213
           A    +G GG + G   F K+  P+ K+ GVEP  +A
Sbjct: 211 AVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAA 247

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352

 Score = 69.2 bits (170), Expect = 6e-14
 Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 15/186 (8%)

Query: 16  GNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
           GNTP++  +N+    G   +I  K E + P  S KDR     I  A + G        +I
Sbjct: 29  GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----RAVI 83

Query: 74  EVTSGNTGVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILE 132
             ++GNT    A  AA  G    +++P    ++ +       GA+++       F++ L 
Sbjct: 84  CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQG--TFDDALN 141

Query: 133 KGEEILKKTPDGYLLRQFENPANPKIH-YETTGPEIWQDSGGKVDAFISGIGTGGTVTGA 191
              +I +       +    NP   +I   +T   EI    G   D     +G  G +T  
Sbjct: 142 IVRKIGEN--FPVEIVNSVNPY--RIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAY 197

Query: 192 GRFLKE 197
            +  K 
Sbjct: 198 WKGFKI 203

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514

 Score = 69.6 bits (171), Expect = 7e-14
 Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 39/218 (17%)

Query: 11  VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMI----KDAEDKGLIT 66
           V E    TP+  +  +       I  K E  +P  S K R AY+M+    ++ +  G+IT
Sbjct: 25  VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT 84

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA-DSAL 125
                    ++GN   G+AF +A  G   +IVMP+  +  +   +R  G E++L   +  
Sbjct: 85  A--------SAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGAN-- 134

Query: 126 RFEEILEKGEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQDSGGKV 175
            F+E   K  E+ ++   G+            +  ++         T   E+ Q     +
Sbjct: 135 -FDEAKAKAIELSQQQ--GFTW----------VPPFDHPMVIAGQGTLALELLQQDA-HL 180

Query: 176 DAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213
           D     +G GG   G    +K+  P IKV  VE  +SA
Sbjct: 181 DRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA 218

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 16/192 (8%)

Query: 31  VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90
           V   A KL       ++ D   YS +   E K      + ++   ++GN G+ +  ++A 
Sbjct: 126 VLAHAEKLALEAGLLTLDD--DYSKLLSPEFKQFF--SQYSIAVGSTGNLGLSIGIMSAR 181

Query: 91  RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQF 150
            G+ + + M +     ++  LR+ G  ++  +    +   +E+G +  +  P+ + +   
Sbjct: 182 IGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQD--YGVAVEEGRKAAQSDPNCFFI-DD 238

Query: 151 ENPANPKIHYETTGPEI---WQDSGGKVDAF-----ISGIGTGGTVTGAGRFLKEN-NPD 201
           EN     + Y   G  +   +   G  VDA          G GG   G    LK      
Sbjct: 239 ENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDH 298

Query: 202 IKVYGVEPSESA 213
           +  +  EP+ S 
Sbjct: 299 VHCFFAEPTHSP 310

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 17/187 (9%)

Query: 16  GNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
           G+TP++ L    +      R+ AK E + P  S KDR     +  A + G        + 
Sbjct: 27  GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVA 81

Query: 74  EVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILE 132
             ++GNT    A  AA  G   I+V+P+   ++ +       GA I+  +    F++ L 
Sbjct: 82  CASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALR 139

Query: 133 KGEEILKKTPDGYLLRQFENPANPKIH--YETTGPEIWQDSGGKVDAFISGIGTGGTVTG 190
             +++ +  P   L+    N  NP      +T   E+  + G         +G  G +T 
Sbjct: 140 LTQKLTEAFP-VALV----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITA 194

Query: 191 AGRFLKE 197
                K 
Sbjct: 195 HWMGYKA 201

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 17/153 (11%)

Query: 52  AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI--AAARGYNLIIVMPSTCSMERRI 109
           AY M+   +    +  G   LI   SG  G+G   I      G   + V     S ++  
Sbjct: 206 AYRMLVS-DRGAQMKQGDIVLIWGASG--GLGSYAIQFVKNGGGIPVAV---VSSAQKEA 259

Query: 110 VLRALGA-EIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168
            +RALG   +I        ++I +    +++       L   +    P I +E TG   +
Sbjct: 260 AVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTF 319

Query: 169 QDS------GGKVDAFISGIGTGGTVTGAGRFL 195
             S      GG V     G  +G   T   R+L
Sbjct: 320 GLSVIVARRGGTV--VTCGSSSGYLHTFDNRYL 350

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	100.0
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	100.0
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	100.0
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	100.0
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	100.0
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	100.0
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	100.0
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	100.0
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	100.0
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	100.0
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	100.0
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	100.0
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	100.0
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	100.0
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	100.0
4h27_A	364	L-serine dehydratase/L-threonine deaminase; PLP de	100.0
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	100.0
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	100.0
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	100.0
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	100.0
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	100.0
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	100.0
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	100.0
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	100.0
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	100.0
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	100.0
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	100.0
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	100.0
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	100.0
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	100.0
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	100.0
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	100.0
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	100.0
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	100.0
1x1q_A	418	Tryptophan synthase beta chain; structural genomic	100.0
1v8z_A	388	Tryptophan synthase beta chain 1; beta+alpha, rike	100.0
1qop_B	396	Tryptophan synthase beta chain; lyase, carbon-oxyg	100.0
2o2e_A	422	Tryptophan synthase beta chain; amino-acid biosynt	100.0
1vb3_A	428	Threonine synthase; PLP-dependent enzyme, lyase; H	100.0
4f4f_A	468	Threonine synthase; structural genomics, niaid, na	100.0
1kl7_A	514	Threonine synthase; threonine synthesis, pyridoxal	100.0
3v7n_A	487	Threonine synthase; ssgcid, structural genomics, s	100.0
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.61
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	93.15
1vp8_A	201	Hypothetical protein AF0103; putative pyruvate kin	92.76
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.76
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	92.5
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	91.92
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	91.76
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	91.35
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	91.26
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	91.25
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	90.99
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	90.8
4eye_A	342	Probable oxidoreductase; structural genomics, niai	90.75
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	90.61
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	90.25
3gms_A	340	Putative NADPH:quinone reductase; structural genom	90.09
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.77
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	89.44
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	89.36
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	89.31
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	89.06
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	88.99
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	88.82
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	88.8
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	88.69
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	88.57
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	88.52
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	88.2
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	88.09
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	88.09
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	87.94
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	87.92
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	87.91
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	87.73
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	87.41
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	87.39
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	87.37
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	87.16
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	87.09
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	86.99
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	86.92
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	86.75
3c85_A	183	Putative glutathione-regulated potassium-efflux S	86.55
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	86.45
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	86.41
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	86.18
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	86.11
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	85.82
1t57_A	206	Conserved protein MTH1675; structural genomics, FM	85.6
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	85.57
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	85.55
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	85.54
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	85.14
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	85.08
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	84.79
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	84.44
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	84.0
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	83.52
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	83.5
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	83.49
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	83.08
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	82.42
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	82.28
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	82.23
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	82.21
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	82.21
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	81.74
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	81.73
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	81.46
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	80.76
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	80.64
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	80.63
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	80.59
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	80.54

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=100.00  E-value=1.9e-58  Score=411.81  Aligned_cols=251  Identities=51%  Similarity=0.880  Sum_probs=229.7

Q ss_pred             hhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHH
Q 025113            6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA   85 (257)
Q Consensus         6 ~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA   85 (257)
                      ++.+.|.+.+|+|||+++++|++.+|++||+|+|++|||||||+|++.+++.+|.++|.+.||..+||++|+||||+|+|
T Consensus        24 ~i~~~i~~lIG~TPLv~~~~Ls~~~G~~IylK~E~lnptGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA  103 (344)
T 3vc3_A           24 NIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMA  103 (344)
T ss_dssp             SCBSSGGGGSCCCCEEECCSTTTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHH
T ss_pred             hhhccHhhhcCCCceEECcccchhhCCEEEEEecCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             HHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHH
Q 025113           86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP  165 (257)
Q Consensus        86 ~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~  165 (257)
                      ++|+.+|++|+||||+++++.|++.++.+||+|+.++...++.+....+.++..+.++.+|++||+||.+++.||.|++.
T Consensus       104 ~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~a~~~t~g~  183 (344)
T 3vc3_A          104 FMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGP  183 (344)
T ss_dssp             HHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEECCCTTTCHHHHHHHHHTHHH
T ss_pred             HHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCCCcchHHHHHHHHHHhhccCceeccccccchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999986545666666677777777799999999999998899999999


Q ss_pred             HHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccce------------eccccCCeE
Q 025113          166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFI------------FISYLFRSF  233 (257)
Q Consensus       166 Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~~------------i~~~~~~~~  233 (257)
                      ||++|+++++|+||+|+|+||+++|++.++|+..|++++|+|||.+++.+.++.++++.            ......|++
T Consensus       184 EI~eq~~~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v~vigVep~~s~~l~~~~~~~~~i~g~g~~~~~~~~~~~~~d~~  263 (344)
T 3vc3_A          184 EIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKV  263 (344)
T ss_dssp             HHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEE
T ss_pred             HHHHHhCCCceEEEEecCCccchHHHhhhhHhhCCCceEEEEcCCCChhhcCCCCCCeeEecccccccCcccchhhceEE
Confidence            99999988999999999999999999999999999999999999999888765544332            224567899


Q ss_pred             EEeChHHHHHHHHHHHhhcCeec
Q 025113          234 VLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       234 v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                      +.|+|+|+.++.++|+++++++|
T Consensus       264 v~v~d~eai~a~~~L~~~eGi~v  286 (344)
T 3vc3_A          264 LEVSSEDAVNMARVLALKEGLMV  286 (344)
T ss_dssp             EEECHHHHHHHHHHHHHHHCCCB
T ss_pred             EEECHHHHHHHHHHHHHHCCCEE
Confidence            99999999999999999999887

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=100.00  E-value=2.6e-57  Score=403.14  Aligned_cols=254  Identities=38%  Similarity=0.652  Sum_probs=232.2

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||+++++| ...+.+||+|+|++|||||||+|++.+++..+.++|.+++|.+.||++|+||||+
T Consensus         7 ~i~~~~~~i~~~ig~TPL~~l~~l-~~~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~   85 (334)
T 3tbh_A            7 KSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGV   85 (334)
T ss_dssp             TTTSCCSSGGGGSSCCCEEECCTT-CCSSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHH
T ss_pred             hHHHHHHHHHHhcCCCCeEECCcc-cCCCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHH
Confidence            345678899999999999999999 7788999999999999999999999999999999999888865469999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++++||||++++..|+++++.+||+|+.+++..+++++.+.+++++++.++++|++||+||.|++.||.|
T Consensus        86 alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~~~np~n~~~g~~t  165 (334)
T 3tbh_A           86 SLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEET  165 (334)
T ss_dssp             HHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCchHHHHHHHHHHHhCCCEEECCccCChhHHHHHHHH
Confidence            99999999999999999999999999999999999999997556899999999999888789999999999998899999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcc------------cceeccccC
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG------------LFIFISYLF  230 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~------------~~~i~~~~~  230 (257)
                      +++||++|+++.||+||+|+|+||+++|++.++|+..|+++||||||.+++++..+.+.            ++.+.+.+.
T Consensus       166 ~~~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~~~  245 (334)
T 3tbh_A          166 TGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLI  245 (334)
T ss_dssp             HHHHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEEEEETTSCTTTTCCCCCCSCTTSCCSSCCTTCCGGGC
T ss_pred             HHHHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEEEeeCCchHhhCCCcCCeecCCCCCCcCCHHHHHHhC
Confidence            99999999977899999999999999999999999999999999999999877543221            344556788


Q ss_pred             CeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          231 RSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       231 ~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      |+++.|+|+|+.+++++|+++++++++
T Consensus       246 d~~~~V~d~e~~~a~~~l~~~egi~~e  272 (334)
T 3tbh_A          246 DEVLCVAGDDAIETALKLTRSDGVFCG  272 (334)
T ss_dssp             SEEEEECHHHHHHHHHHHHHHHCCCBC
T ss_pred             CEEEEECHHHHHHHHHHHHHHcCeEEc
Confidence            999999999999999999999999875

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}

Probab=100.00  E-value=2e-57  Score=413.45  Aligned_cols=255  Identities=57%  Similarity=0.970  Sum_probs=235.7

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      +.+++++++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++.++.++|.+.||..+||++|+||||+
T Consensus       109 ~~~~~~~~i~~~ig~TPLv~l~~Ls~~~g~~I~lK~E~lnptGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG~  188 (430)
T 4aec_A          109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGI  188 (430)
T ss_dssp             SSCSCBSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHH
T ss_pred             cccchhhhhhccCCCCCeEEChhhhhhcCCeEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHHH
Confidence            45677899999999999999999998889999999999999999999999999999999999999888899999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++|+||||++++..|++.++.+||+|+.+++..+++++.+.+++++++.++++|++||+||.+++.||.|
T Consensus       189 AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~~~~~~a~~~a~el~~~~~~~~~i~~~~np~~~~aG~~T  268 (430)
T 4aec_A          189 GLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYET  268 (430)
T ss_dssp             HHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEEECCTTTCTHHHHHHHHT
T ss_pred             HHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECCCCChHHHHHHHHHHHHhcCCcEEecCCCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999986556899999999999988789999999999998899999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcc------------cceeccccC
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG------------LFIFISYLF  230 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~------------~~~i~~~~~  230 (257)
                      ++.||++|++++||+||+|+|+||+++|++.++|+..|+++||||||.+++++.++.+.            ++.+...+.
T Consensus       269 ~a~EI~eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVigVep~~s~~l~~g~~~~~~i~Gl~~~~~p~~l~~~~v  348 (430)
T 4aec_A          269 TGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIM  348 (430)
T ss_dssp             HHHHHHHHTTSCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCTTTC
T ss_pred             HHHHHHHHcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEEeCCCcHhhCCCccceeehhccCCCCcHHHHHHhC
Confidence            99999999977899999999999999999999999999999999999999877643322            234456678


Q ss_pred             CeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          231 RSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       231 ~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      |+++.|+|+|+.+++++|+++++++++
T Consensus       349 d~~v~Vsd~ea~~a~r~La~~eGi~ve  375 (430)
T 4aec_A          349 DEVIAISSEEAIETAKQLALKEGLMVG  375 (430)
T ss_dssp             SEEEEECHHHHHHHHHHHHHHHCCCBC
T ss_pred             CeEEEECHHHHHHHHHHHHHHCCCEEe
Confidence            999999999999999999999999875

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*

Probab=100.00  E-value=6.9e-57  Score=398.74  Aligned_cols=252  Identities=62%  Similarity=1.018  Sum_probs=230.9

Q ss_pred             hhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHH
Q 025113            6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA   85 (257)
Q Consensus         6 ~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA   85 (257)
                      .+++++...+++|||+++++|++..+.+||+|+|++|||||||||++.+++.++.++|.++||..+||++|+||||+|+|
T Consensus         4 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA   83 (322)
T 1z7w_A            4 RIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLA   83 (322)
T ss_dssp             CCCSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHH
T ss_pred             hhhhHHHHhcCCCCeEECccccccCCceEEEEecccCCCCchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHH
Confidence            35788999999999999999988888899999999999999999999999999999999988877899999999999999


Q ss_pred             HHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHH
Q 025113           86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP  165 (257)
Q Consensus        86 ~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~  165 (257)
                      ++|+.+|++++||||.++++.|+++++.+||+|+.++++.+++++.+.+++++++.++++|++||+||.|+..||.|+++
T Consensus        84 ~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~~~n~~~~~~g~~t~~~  163 (322)
T 1z7w_A           84 FTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGP  163 (322)
T ss_dssp             HHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHH
T ss_pred             HHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCeEeCCCCCChhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999997545889999999999988789999999999998889999999


Q ss_pred             HHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcc------------cceeccccCCeE
Q 025113          166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG------------LFIFISYLFRSF  233 (257)
Q Consensus       166 Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~------------~~~i~~~~~~~~  233 (257)
                      ||++|++++||+||+|+|+||+++|++.++|+..|+++||+|||.+++.+.++.+.            ++.+.+.+.+++
T Consensus       164 Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~  243 (322)
T 1z7w_A          164 EIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEV  243 (322)
T ss_dssp             HHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEE
T ss_pred             HHHHHhcCCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEEEecCCCccccCCCCCCcccCcCcCCCCChhhhHHhCCEE
Confidence            99999976899999999999999999999999999999999999998777532211            234556678999


Q ss_pred             EEeChHHHHHHHHHHHhhcCeecC
Q 025113          234 VLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       234 v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.|+|+|+.++++.|+++++++++
T Consensus       244 ~~V~d~e~~~a~~~l~~~~gi~~~  267 (322)
T 1z7w_A          244 VQVSSDESIDMARQLALKEGLLVG  267 (322)
T ss_dssp             EEECHHHHHHHHHHHHHHHSCCBC
T ss_pred             EEECHHHHHHHHHHHHHHcCceEc
Confidence            999999999999999999999875

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=100.00  E-value=1.5e-56  Score=396.96  Aligned_cols=252  Identities=34%  Similarity=0.491  Sum_probs=230.1

Q ss_pred             hhhhhHhhhcccCCCCceecccccCC-------CCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeC
Q 025113            4 NNAIKRDVTELIGNTPMVYLNNVVDG-------CVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVT   76 (257)
Q Consensus         4 ~~~~~~~i~~~~~~TPl~~~~~l~~~-------~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s   76 (257)
                      .|+++++|...+++|||+++++|++.       .+.+||+|+|++|||||||+|++.+++.++.++|.++|+ .+||++|
T Consensus         2 ~~~~~~~i~~~ig~TPL~~~~~l~~~~~~~~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~l~~~-~~vv~aS   80 (325)
T 3dwg_A            2 HMTRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPG-ATILEPT   80 (325)
T ss_dssp             CCCEESSTGGGCSCCCEEECTTTSSBSSCBTTBCCEEEEEEETTSSTTSBTTHHHHHHHHHHHHHTTCCCTT-CEEEEEC
T ss_pred             CcccccCHHHhcCCCCcEEccccchhhcccccCCCcEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCCCCC-CEEEEeC
Confidence            35678899999999999999999877       678999999999999999999999999999999988886 5699999


Q ss_pred             CChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcch
Q 025113           77 SGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANP  156 (257)
Q Consensus        77 sGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (257)
                      +||||+|+|++|+.+|++|+||||++++..|+++++.+||+|+.+++..+++++.+.+++++++.++++|++||+||.++
T Consensus        81 sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~np~~~  160 (325)
T 3dwg_A           81 SGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANT  160 (325)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECSTTTHHHHHHHHHHHHHHCTTSBCCCTTTCHHHH
T ss_pred             CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999997667999999999999998669999999999997


Q ss_pred             HhhHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCC-----CcccceeccccCC
Q 025113          157 KIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGG-----QRGLFIFISYLFR  231 (257)
Q Consensus       157 ~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~-----~~~~~~i~~~~~~  231 (257)
                      ..||.|+++||++|++ .||+||+|+|+||+++|++.++|+..|+++||+|||.+++.+..-     ...++.+.+.+.|
T Consensus       161 ~~g~~t~~~Ei~~q~~-~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~~~~i~~~~~~~~~~~~~~d  239 (325)
T 3dwg_A          161 DSHYCGTGPELLADLP-EITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGVYALRNMDEGFVPELYDPEILT  239 (325)
T ss_dssp             HHHHHTHHHHHHHHCT-TCCEEEEECSSSHHHHHHHHHHHHHSTTCEEEEEEEECCGGGGCCSSGGGCCCCTTCCGGGCS
T ss_pred             HHHHHHHHHHHHHhcC-CCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEeeCCCcchhccCcccCCcCcccccHhhCC
Confidence            7899999999999996 499999999999999999999999999999999999999776431     1123445677889


Q ss_pred             eEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          232 SFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       232 ~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.+.|+|+|+.++++.|+++++++++
T Consensus       240 ~~~~V~d~e~~~a~~~l~~~egi~~e  265 (325)
T 3dwg_A          240 ARYSVGAVDAVRRTRELVHTEGIFAG  265 (325)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHCCCBC
T ss_pred             eEEEECHHHHHHHHHHHHHHcCceec
Confidence            99999999999999999999999875

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=100.00  E-value=3e-55  Score=385.19  Aligned_cols=247  Identities=39%  Similarity=0.615  Sum_probs=224.0

Q ss_pred             HhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113            9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus         9 ~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      +++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|.++|| .+||++|+||||+|+|++|
T Consensus         2 ~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~g-~~vv~~ssGN~g~a~A~~a   80 (303)
T 2v03_A            2 STLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIA   80 (303)
T ss_dssp             CSGGGGSSCCCEEECSSSSCSSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTT-CEEEEECSSHHHHHHHHHH
T ss_pred             cchHhhcCCCCcEECcccccccCCEEEEEeccCCCCCCcHHHHHHHHHHHHHHcCCCCCC-CEEEEECCcHHHHHHHHHH
Confidence            467889999999999999888889999999999999999999999999999999988876 5799999999999999999


Q ss_pred             HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHH
Q 025113           89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW  168 (257)
Q Consensus        89 ~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~  168 (257)
                      +.+|++++||||++++..|+++++.+||+|+.++.+.+++++.+.+++++++.+++ |++||+||.++..||.|+++||+
T Consensus        81 ~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~n~~~~~~g~~t~~~Ei~  159 (303)
T 2v03_A           81 ALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIW  159 (303)
T ss_dssp             HHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHTTSCE-ECCTTTCTHHHHHHHHTHHHHHH
T ss_pred             HHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCc-ccCCcCChhhHHHhcCCcHHHHH
Confidence            99999999999999999999999999999999997557999999999998885577 99999999997779999999999


Q ss_pred             hhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC--C-Cc--ccceeccccCCeEEEeChHHHHH
Q 025113          169 QDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG--G-QR--GLFIFISYLFRSFVLVDDGAVVH  243 (257)
Q Consensus       169 ~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~--~-~~--~~~~i~~~~~~~~v~v~d~e~~~  243 (257)
                      +|+++++|+||+|+|+||+++|++.++|+..|+++||+|||.+++++.+  + .+  .++.+.+.+.++++.|+|+|+.+
T Consensus       160 ~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~  239 (303)
T 2v03_A          160 QQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAEN  239 (303)
T ss_dssp             HHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTTCCCCCGGGCCTTCCGGGCSEEEEECHHHHHH
T ss_pred             HHhCCCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEEEcCCCCcccccCCcCCCCCCCcccchHHCCEEEEECHHHHHH
Confidence            9997679999999999999999999999999999999999999987642  1 11  12344556789999999999999


Q ss_pred             HHHHHHhhcCeecC
Q 025113          244 LHNYLLLHIFTLVC  257 (257)
Q Consensus       244 a~~~l~~~~~~~v~  257 (257)
                      +++.|+++++++++
T Consensus       240 a~~~l~~~~gi~~~  253 (303)
T 2v03_A          240 TMRELAVREGIFCG  253 (303)
T ss_dssp             HHHHHHHHHCCCBC
T ss_pred             HHHHHHHHcCceEc
Confidence            99999999999875

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=100.00  E-value=2.5e-55  Score=387.32  Aligned_cols=252  Identities=45%  Similarity=0.709  Sum_probs=227.3

Q ss_pred             hhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHH
Q 025113            5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL   84 (257)
Q Consensus         5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~al   84 (257)
                      +.+++++...+++|||+++++|++..+.+||+|+|++|||||||||++.+++..+.++|.+++| .+||++|+||||+|+
T Consensus         4 ~~~~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g-~~vv~assGN~g~al   82 (313)
T 2q3b_A            4 MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIAL   82 (313)
T ss_dssp             CCCCSSGGGGSCCCCEEECSSSCTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTT-CEEEEECSSHHHHHH
T ss_pred             cchhhhHHHhcCCCceEECcccccccCcEEEEEehhcCCCCcHHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHH
Confidence            4567889999999999999999888888999999999999999999999999999999988776 469999999999999


Q ss_pred             HHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHH
Q 025113           85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG  164 (257)
Q Consensus        85 A~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~  164 (257)
                      |++|+.+|++++||||.++++.|+++++.+||+|+.++...+++++.+.+++++++.+..++++||+||.++..||.|++
T Consensus        83 A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~~~~~~~~t~~  162 (313)
T 2q3b_A           83 AMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTA  162 (313)
T ss_dssp             HHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEECCCTTTCTHHHHHHHHTHH
T ss_pred             HHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHHHHhCCCEEeCCCCCChhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999754688999999999998855588999999999667899999


Q ss_pred             HHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCc------------ccceeccccCCe
Q 025113          165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR------------GLFIFISYLFRS  232 (257)
Q Consensus       165 ~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~------------~~~~i~~~~~~~  232 (257)
                      +||++|+++++|+||+|+|+||+++|++.++|++.|+++||+|||.+++.+....+            .++.+...+.|+
T Consensus       163 ~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~d~  242 (313)
T 2q3b_A          163 EEVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDE  242 (313)
T ss_dssp             HHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCE
T ss_pred             HHHHHHcCCCCCEEEEccCcchhHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCcccCCcCCCCCChhhhHhhccE
Confidence            99999997679999999999999999999999999999999999999877643211            123344567899


Q ss_pred             EEEeChHHHHHHHHHHHhhcCeecC
Q 025113          233 FVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       233 ~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ++.|+|+|+.++++.|+++++++++
T Consensus       243 ~~~v~d~e~~~a~~~l~~~~gi~~e  267 (313)
T 2q3b_A          243 IITVGNEDALNVARRLAREEGLLVG  267 (313)
T ss_dssp             EEEECHHHHHHHHHHHHHHHSCCBC
T ss_pred             EEEECHHHHHHHHHHHHHHcCceEc
Confidence            9999999999999999999999875

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=100.00  E-value=1.6e-55  Score=389.07  Aligned_cols=249  Identities=39%  Similarity=0.607  Sum_probs=224.1

Q ss_pred             hhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHH
Q 025113            6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA   85 (257)
Q Consensus         6 ~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA   85 (257)
                      ++++++...+++|||+++++| + .+.+||+|+|++|||||||||++.+++.++.++|.++|+ .+||++|+||||+|+|
T Consensus         2 ~~~~~i~~~~~~TPL~~l~~l-~-~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~~-~~vv~~ssGN~g~a~A   78 (316)
T 1y7l_A            2 AIYADNSYSIGNTPLVRLKHF-G-HNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALA   78 (316)
T ss_dssp             CCCSSGGGGCCCCCEEECSSS-S-STTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTT-CEEEESCCSHHHHHHH
T ss_pred             cchhhhHHhcCCCCcEECccC-C-CCCEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHH
Confidence            356789999999999999999 6 788999999999999999999999999999999988776 5799999999999999


Q ss_pred             HHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCe-EEeCCCCCCcchHhhHhhHH
Q 025113           86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG-YLLRQFENPANPKIHYETTG  164 (257)
Q Consensus        86 ~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~t~~  164 (257)
                      ++|+.+|++++||||++++..|+++++.+||+|+.++++.+++++.+.+++++++.++. +|++||+||.|+..||.|++
T Consensus        79 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~  158 (316)
T 1y7l_A           79 YVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTG  158 (316)
T ss_dssp             HHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHH
T ss_pred             HHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999996445899999999999987667 88999999999778999999


Q ss_pred             HHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCccccCC------------------Cccccee
Q 025113          165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSESAVLNGG------------------QRGLFIF  225 (257)
Q Consensus       165 ~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigv~~~~~~~~~~~------------------~~~~~~i  225 (257)
                      +||++|+++++|+||+|+|+||+++|++.++|++. |+++||+|||.+++.+.+.                  ...++.+
T Consensus       159 ~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~g~~~~~~~~~~~gi~~~~~~~~~  238 (316)
T 1y7l_A          159 PEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNL  238 (316)
T ss_dssp             HHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTC
T ss_pred             HHHHHHcCCCCCEEEEeCCccccHHHHHHHHHHhCCCCCEEEEEecCCCccccccccCCccCCCCcccCcCCCCCCCchh
Confidence            99999997669999999999999999999999998 9999999999998654320                  0012345


Q ss_pred             ccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          226 ISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       226 ~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .+.+.++++.|+|+|+.++++.|+++++++++
T Consensus       239 ~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e  270 (316)
T 1y7l_A          239 DLSIIDRVETVDSDTALATARRLMAEEGILAG  270 (316)
T ss_dssp             CGGGCCEEEEECHHHHHHHHHHHHHHHCCCBC
T ss_pred             hHhhCCEEEEECHHHHHHHHHHHHHhhCCeEc
Confidence            56678999999999999999999999999875

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}

Probab=100.00  E-value=3.1e-55  Score=385.87  Aligned_cols=249  Identities=45%  Similarity=0.708  Sum_probs=207.2

Q ss_pred             hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113            7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF   86 (257)
Q Consensus         7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~   86 (257)
                      +++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|.+++| .+||++|+||||+|+|+
T Consensus         4 ~~~~i~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g-~~vv~assGN~g~a~A~   82 (308)
T 2egu_A            4 TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPG-DTIVEPTSGNTGIGLAM   82 (308)
T ss_dssp             CCSCGGGGSSCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTT-CEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCeEECCcccccCCCEEEEEecccCCCCChHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHHHH
Confidence            46788999999999999999888889999999999999999999999999999999988776 56999999999999999


Q ss_pred             HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113           87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE  166 (257)
Q Consensus        87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E  166 (257)
                      +|+.+|++++||||++++..|+++++.+||+|+.++.+.+++++.+.+++++++. ++++++||+||.++..||.|+++|
T Consensus        83 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~g~~t~~~E  161 (308)
T 2egu_A           83 VAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGAIAKAEELVREH-GYFMPQQFKNEANPEIHRLTTGKE  161 (308)
T ss_dssp             HHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH-CCBCC--------------CHHHH
T ss_pred             HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHHC-cCCcCCcCCChhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999997545889999999998887 458889999999977899999999


Q ss_pred             HHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcc------------cceeccccCCeEE
Q 025113          167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG------------LFIFISYLFRSFV  234 (257)
Q Consensus       167 i~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~------------~~~i~~~~~~~~v  234 (257)
                      |++|+++++|+||+|+|+||+++|++.++|++.|+++||+|||.+++.+..+.++            ++.+...+.|+++
T Consensus       162 i~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~  241 (308)
T 2egu_A          162 IVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVI  241 (308)
T ss_dssp             HHHHHTTCCCEEEEEGGGTHHHHHHHHHHHHHCTTCEEEEEEECC-----------------------CCCCCCSCSEEE
T ss_pred             HHHHcCCCCCEEEEeeCCchhHHHHHHHHHHhCCCCEEEEEEeCCCccccCCCCCCcccCccCCCCCCHhHHHHhcCeEE
Confidence            9999976799999999999999999999999999999999999999766432111            2334456789999


Q ss_pred             EeChHHHHHHHHHHHhhcCeecC
Q 025113          235 LVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       235 ~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .|+|+|+.++++.|+++++++++
T Consensus       242 ~v~d~e~~~a~~~l~~~~gi~~e  264 (308)
T 2egu_A          242 TVTTEEAFAAARRAAREEGILGG  264 (308)
T ss_dssp             EECHHHHHHHHHHHHHHHCCCBC
T ss_pred             EECHHHHHHHHHHHHHHhCceEc
Confidence            99999999999999999999875

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=100.00  E-value=5.7e-55  Score=389.46  Aligned_cols=251  Identities=36%  Similarity=0.571  Sum_probs=227.0

Q ss_pred             hhhhHhhhcccCCCCceecccccC----CCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChH
Q 025113            5 NAIKRDVTELIGNTPMVYLNNVVD----GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNT   80 (257)
Q Consensus         5 ~~~~~~i~~~~~~TPl~~~~~l~~----~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~   80 (257)
                      .++++++...+++|||+++++|++    ..+.+||+|+|++|||||||||++.+++..+.++|.+++| .+||++|+|||
T Consensus        11 ~~~~~~i~~~~g~TPL~~~~~l~~~~~~~~g~~v~~K~E~~~ptGSfKdR~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~   89 (343)
T 2pqm_A           11 KRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPG-MEIIESTSGNT   89 (343)
T ss_dssp             CCEESSGGGGSSCCCEEECCGGGCSTTSCTTCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTSSCTT-CEEEEECSSHH
T ss_pred             hhHHHHHHhhcCCCCeEECCccccccccccCcEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCC-CEEEEECCcHH
Confidence            356788999999999999999987    7788999999999999999999999999999999988876 46999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCe-EEeCCCCCCcchHhh
Q 025113           81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG-YLLRQFENPANPKIH  159 (257)
Q Consensus        81 ~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g  159 (257)
                      |+|+|++|+.+|++|+||||++++..|+++++.+||+|+.+++..+++++.+.+++++++.++. ++++||+||.|++.|
T Consensus        90 g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~n~~n~~~g  169 (343)
T 2pqm_A           90 GIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAH  169 (343)
T ss_dssp             HHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTTEEECCTTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEECCCCCChhHHHHH
Confidence            9999999999999999999999999999999999999999997546889999999999988666 778999999998889


Q ss_pred             HhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCc------------ccceecc
Q 025113          160 YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR------------GLFIFIS  227 (257)
Q Consensus       160 ~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~------------~~~~i~~  227 (257)
                      |.|++ ||++|+++++|+||+|+|+||+++|++.++|++.|+++||+|||.+++.+..+.+            .++.+.+
T Consensus       170 ~~t~~-Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~  248 (343)
T 2pqm_A          170 HYTAN-EIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKK  248 (343)
T ss_dssp             HHHHH-HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCTTTTCCCCCCCCTTCCCSSCCTTCCG
T ss_pred             HHHHH-HHHHHcCCCCCEEEEecCCchhHHHHHHHHHHcCCCCEEEEEecCCCcccccCCCCCeecCccCCCCCCHHHHH
Confidence            99999 9999997679999999999999999999999999999999999999876653211            1334556


Q ss_pred             ccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          228 YLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       228 ~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .+.++++.|+|+|+.++++.|+++++++++
T Consensus       249 ~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e  278 (343)
T 2pqm_A          249 EFVDEIIPIKTQDAWKMARAVVKYDGIMCG  278 (343)
T ss_dssp             GGCCEEEEECHHHHHHHHHHHHHHHCCCBC
T ss_pred             HhCCeEEEECHHHHHHHHHHHHHHhCCeEc
Confidence            678999999999999999999999999875

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*

Probab=100.00  E-value=1.8e-54  Score=380.33  Aligned_cols=246  Identities=43%  Similarity=0.680  Sum_probs=221.1

Q ss_pred             hhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCc-eEEEEeCCChHHHHHHHHHH
Q 025113           11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK-TTLIEVTSGNTGVGLAFIAA   89 (257)
Q Consensus        11 i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~-~~vv~~ssGN~~~alA~~a~   89 (257)
                      |...+++|||+++++|++..+.+||+|+|++|||||||||++.+++.++.++|.++||. .+||++|+||||+|+|++|+
T Consensus         3 i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~   82 (304)
T 1ve1_A            3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAA   82 (304)
T ss_dssp             GGGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHH
T ss_pred             hHHhcCCCCcEECcccccccCCEEEEEecccCCCCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHH
Confidence            56789999999999998888899999999999999999999999999999999887763 17999999999999999999


Q ss_pred             HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHh
Q 025113           90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ  169 (257)
Q Consensus        90 ~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~  169 (257)
                      .+|++++||||.+++..|+++++.+||+|+.++++.+++++.+.+++++++ ++++|++||+||.++..||.|+++||++
T Consensus        83 ~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~l~~~-~~~~~~~~~~n~~~~~g~~~t~~~Ei~~  161 (304)
T 1ve1_A           83 SRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEE-LGAFMPDQFKNPANVRAHYETTGPELYE  161 (304)
T ss_dssp             HHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHH-HTCBCCCTTTCHHHHHHHHHTHHHHHHH
T ss_pred             HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHhc-CCCEeCCCCCChhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999755589999999999888 4889999999999955558999999999


Q ss_pred             hhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCc------------ccceeccccCCeEEEeC
Q 025113          170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR------------GLFIFISYLFRSFVLVD  237 (257)
Q Consensus       170 ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~------------~~~~i~~~~~~~~v~v~  237 (257)
                      |+++++|+||+|+|+||+++|++.++|++.|+++||+|||.+++.+.++.+            .++.+.+.+.++.+.|+
T Consensus       162 q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~  241 (304)
T 1ve1_A          162 ALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW  241 (304)
T ss_dssp             HTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEEC
T ss_pred             HcCCCCCEEEEecCCchhHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCcccCCCCCCCCChhhhhhhCCEEEEEC
Confidence            997679999999999999999999999999999999999999876653221            12344556788999999


Q ss_pred             hHHHHHHHHHHHhhcCeecC
Q 025113          238 DGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       238 d~e~~~a~~~l~~~~~~~v~  257 (257)
                      |+|+.+++++|+++++++++
T Consensus       242 d~e~~~a~~~l~~~~gi~~e  261 (304)
T 1ve1_A          242 EEDAFPLARRLAREEGLFLG  261 (304)
T ss_dssp             HHHHHHHHHHHHHHHCCCBC
T ss_pred             HHHHHHHHHHHHHHhCcEEc
Confidence            99999999999999999875

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*

Probab=100.00  E-value=1.7e-53  Score=374.01  Aligned_cols=242  Identities=43%  Similarity=0.646  Sum_probs=216.6

Q ss_pred             hHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113            8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI   87 (257)
Q Consensus         8 ~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~   87 (257)
                      +.-+...+++|||+++++|+    .+||+|+|++|||||||||++.+++..+.++|.++++   ||++|+||||+|+|++
T Consensus        11 ~~~~~~~~~~TPL~~l~~l~----~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~~---vv~aSsGN~g~a~A~a   83 (303)
T 1o58_A           11 HHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMI   83 (303)
T ss_dssp             CCHHHHHSCCCCEEECTTTC----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTC---EEEECSSHHHHHHHHH
T ss_pred             hhhhhhccCCCCeEECccCC----ceEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCCCC---EEEECchHHHHHHHHH
Confidence            34567789999999999876    4899999999999999999999999999998876554   8999999999999999


Q ss_pred             HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113           88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI  167 (257)
Q Consensus        88 a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei  167 (257)
                      |+.+|++++||||.+++..|+++++.+||+|+.++++.+++++.+.+++++++. +++|++||+||.++..||.|+++||
T Consensus        84 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei  162 (303)
T 1o58_A           84 GAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEI  162 (303)
T ss_dssp             HHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHH
T ss_pred             HHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhc-CeEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999996445899999999998887 7888999999999778999999999


Q ss_pred             HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCC-cEEEEEeCCCCccccCCCcc------------cceeccccCCeEE
Q 025113          168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPD-IKVYGVEPSESAVLNGGQRG------------LFIFISYLFRSFV  234 (257)
Q Consensus       168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~-~~vigv~~~~~~~~~~~~~~------------~~~i~~~~~~~~v  234 (257)
                      ++|++++||+||+|+|+||+++|++.++|++.|+ ++||+|||.+++.+..+.+.            ++.+.+.+.++.+
T Consensus       163 ~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~~vigve~~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~~~d~~~  242 (303)
T 1o58_A          163 LKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVI  242 (303)
T ss_dssp             HHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEE
T ss_pred             HHHcCCCCCEEEEeeCCcccHHHHHHHHHHhCCCCCEEEEEecCCCccccCCCCCCeecCcCCCCCcCHHHHHHhCCeEE
Confidence            9999766999999999999999999999999999 99999999999776542211            2334456788999


Q ss_pred             EeChHHHHHHHHHHHhhcCeecC
Q 025113          235 LVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       235 ~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .|+|+|+.++++.|+++++++++
T Consensus       243 ~V~d~e~~~a~~~l~~~~gi~~e  265 (303)
T 1o58_A          243 TVEDEEAYEMARYLAKKEGLLVG  265 (303)
T ss_dssp             EECHHHHHHHHHHHHHHHCCCBC
T ss_pred             EECHHHHHHHHHHHHHHcCceEc
Confidence            99999999999999999999875

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*

Probab=100.00  E-value=5.6e-54  Score=383.40  Aligned_cols=249  Identities=21%  Similarity=0.291  Sum_probs=219.0

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++.++.++|...+ ..+||++|+||||+
T Consensus        11 ~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~-~~~vv~~SsGNhg~   89 (346)
T 3l6b_A           11 DVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERK-PKAVVTHSSGNHGQ   89 (346)
T ss_dssp             HHHHHHHHHGGGSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHHTTC-----CC-CSCEEEECSSHHHH
T ss_pred             HHHHHHHHHhcccCCCCeEEchhhHHHhCCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHhccccC-CCEEEEeCCCHHHH
Confidence            45668899999999999999999988888899999999999999999999999999988764333 35699999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++|+||||++++..|+++++.+||+|+.+++  +++++.+.+++++++. +++|++|++||.+ +.||.|
T Consensus        90 a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~~l~~~~-~~~~i~~~~np~~-~~g~~t  165 (346)
T 3l6b_A           90 ALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEP--SDESRENVAKRVTEET-EGIMVHPNQEPAV-IAGQGT  165 (346)
T ss_dssp             HHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECS--SHHHHHHHHHHHHHHH-TCEECCSSSCHHH-HHHHHH
T ss_pred             HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHH
Confidence            99999999999999999999999999999999999999995  5899999999998887 7899999999987 789999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC-------------------
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ-------------------  219 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~-------------------  219 (257)
                      +++||++|+ +++|+||+|+|+||+++|++.++|+..|+++||||||.+++++..    +.                   
T Consensus       166 ~~~Ei~~q~-~~~d~vvv~vG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~~tia~gl~~~~  244 (346)
T 3l6b_A          166 IALEVLNQV-PLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSI  244 (346)
T ss_dssp             HHHHHHHHS-TTCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCSCC
T ss_pred             HHHHHHHhC-CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCCHHHHHHHHcCCccccCCCCCchhhhccCCC
Confidence            999999999 589999999999999999999999999999999999998764310    00                   


Q ss_pred             -cccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 -RGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 -~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       +..+++.+.+.|+++.|+|+|+.++++.|+++++++++
T Consensus       245 g~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e  283 (346)
T 3l6b_A          245 GLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIE  283 (346)
T ss_dssp             CTTHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCC
T ss_pred             cHHHHHHHHHcCCeEEEECHHHHHHHHHHHHHHCCcEEc
Confidence             11234556778999999999999999999999999875

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=100.00  E-value=1.7e-52  Score=382.56  Aligned_cols=251  Identities=38%  Similarity=0.582  Sum_probs=217.8

Q ss_pred             hhhHhhhcccCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113            6 AIKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG   83 (257)
Q Consensus         6 ~~~~~i~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a   83 (257)
                      ++++++...+++|||+++++|++.+|  .+||+|+|++|||||||||++.+++..+.++|.++|+ .+||++|+||||+|
T Consensus        97 ~~~~~i~~~ig~TPLv~l~~Ls~~~G~~~~v~lK~E~~nptGSfKdR~a~~~i~~a~~~G~l~~g-~tVV~aSsGN~G~A  175 (435)
T 1jbq_A           97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIG  175 (435)
T ss_dssp             SEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTT-CEEEEECSSHHHHH
T ss_pred             hHHHHHHhhCCCCCeEECcchhhHhCCCceEEEEECCCCCcCCHHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHH
Confidence            35677889999999999999987666  6899999999999999999999999999999988886 46999999999999


Q ss_pred             HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHH---HHHHHHHHHHhCCCeEEeCCCCCCcchHhhH
Q 025113           84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE---ILEKGEEILKKTPDGYLLRQFENPANPKIHY  160 (257)
Q Consensus        84 lA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  160 (257)
                      +|++|+.+|++++||||++++..|+++++.+||+|+.++...++++   ..+.+++++++.++.+|++||+|+.|++.||
T Consensus       176 lA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~~~~~d~~~~~~~~a~~la~~~~~~~~i~q~~n~~n~~ag~  255 (435)
T 1jbq_A          176 LALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHY  255 (435)
T ss_dssp             HHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHH
T ss_pred             HHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecCCCCcchHHHHHHHHHHHHHhcCCeEEeCccCCcccHHHHH
Confidence            9999999999999999999999999999999999999986444654   4577888888877889999999999989999


Q ss_pred             hhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC-----CCcc------------cc
Q 025113          161 ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG-----GQRG------------LF  223 (257)
Q Consensus       161 ~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~-----~~~~------------~~  223 (257)
                      .|++.||++|+++++|+||+|+|+||+++|++.++|+..|+++||||||.+++.+..     +...            +.
T Consensus       256 ~t~a~EI~eQl~~~~D~vVvpvGtGGtlaGi~~~lk~~~p~vrVigVep~gs~~~~~~~l~~~~~~~~~~~gig~~~~~~  335 (435)
T 1jbq_A          256 DTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT  335 (435)
T ss_dssp             HTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCT
T ss_pred             HHHHHHHHHHcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCEEEEEecCCchhhchhhhhcCCCcceeecccccCccch
Confidence            999999999997679999999999999999999999999999999999999854311     1100            01


Q ss_pred             eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          224 IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       224 ~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .+...+.|+++.|+|+|+.+++++|+++++++++
T Consensus       336 ~l~~~~vd~~~~Vsd~ea~~a~r~La~~eGilve  369 (435)
T 1jbq_A          336 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCG  369 (435)
T ss_dssp             TCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBC
T ss_pred             hhhhhhccceEEeCHHHHHHHHHHHHHHcCCEEc
Confidence            1224578899999999999999999999999875

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=100.00  E-value=5e-52  Score=389.74  Aligned_cols=252  Identities=36%  Similarity=0.570  Sum_probs=224.1

Q ss_pred             hhhhHhhhcccCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            5 NAIKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      .++++.+...+++|||+++++|++.+|  .+||+|+|++|||||||+|++.+++..|.++|.++|| .+||++|+||||+
T Consensus        48 ~~~~~~i~~~ig~TPl~~l~~l~~~~g~~~~i~~K~E~~~ptGS~K~R~a~~~i~~a~~~g~~~~g-~~vv~~ssGN~g~  126 (527)
T 3pc3_A           48 QQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPG-YTIIEPTSGNTGI  126 (527)
T ss_dssp             CSSCSSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHHTCCCTT-CEEEEECSSHHHH
T ss_pred             hhHHhhHHhhcCCCCcEEcchhhhhcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHH
Confidence            456778899999999999999987666  6999999999999999999999999999999998887 4699999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHH---HHHHHHHHHHHhCCCeEEeCCCCCCcchHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE---EILEKGEEILKKTPDGYLLRQFENPANPKIH  159 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  159 (257)
                      |+|++|+.+|++|+||||++++..|+++++.+||+|+.++...+|+   .+.+.+++++++.++.+|++||+||.|++.|
T Consensus       127 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~n~~~g  206 (527)
T 3pc3_A          127 GLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAH  206 (527)
T ss_dssp             HHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTSCTTSTTSHHHHHHHHHHHSSSEECCCTTTCTHHHHHH
T ss_pred             HHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCCcccHHHHHHHHHHHHHhCCCcEecCCCCCcchHHHH
Confidence            9999999999999999999999999999999999999998644454   3677888998888788899999999998999


Q ss_pred             HhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC-----CCcc------------c
Q 025113          160 YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG-----GQRG------------L  222 (257)
Q Consensus       160 ~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~-----~~~~------------~  222 (257)
                      |.|++.||++|+++++|+||+|+|+||+++|++.++|+..|+++||||||.+++.+..     +.++            +
T Consensus       207 ~~t~~~Ei~~q~~~~~d~vv~~vG~GG~~~G~~~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~p  286 (527)
T 3pc3_A          207 YDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPP  286 (527)
T ss_dssp             HHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEETTCCCSSSGGGGCCSCCCCSCCSCCCSSCC
T ss_pred             HHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCcccccchhhcCCCCCceeccccCCCCCC
Confidence            9999999999997689999999999999999999999999999999999999864321     1111            1


Q ss_pred             ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          223 FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       223 ~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ..+.+.+.|+++.|+|+|+.+|+++|+++++++++
T Consensus       287 ~~~~~~~~d~~~~V~d~e~~~a~r~l~~~eGi~~~  321 (527)
T 3pc3_A          287 TVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCG  321 (527)
T ss_dssp             TTCCGGGCCEEEEECGGGTHHHHHHHHHHHCCCBC
T ss_pred             cccchhhCcEEEEECHHHHHHHHHHHHHHcCceEc
Confidence            22345678999999999999999999999999875

>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*

Probab=100.00  E-value=1.5e-52  Score=376.54  Aligned_cols=241  Identities=20%  Similarity=0.195  Sum_probs=214.3

Q ss_pred             HhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113            9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus         9 ~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      .+....+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++|.     .+||++|+||||+|+|++|
T Consensus        38 ~~~~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~aa  112 (364)
T 4h27_A           38 MSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC-----AHFVCSSSGNAGMAAAYAA  112 (364)
T ss_dssp             ---CCSSCCCCEEEEHHHHHHHTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHH
T ss_pred             hhcCCCCCcCCeEEChhhHHHhCCEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcCC-----CEEEEeCCChHHHHHHHHH
Confidence            44566789999999999988888899999999999999999999999999998774     6799999999999999999


Q ss_pred             HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHH
Q 025113           89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW  168 (257)
Q Consensus        89 ~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~  168 (257)
                      +.+|++|+||||++++..|+++++.+||+|+.+++  +++++.+.+++++++.++++|++||+||.+ +.||.|++.||+
T Consensus       113 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~~~a~~~a~~l~~~~~~~~~~~~~~np~~-~~G~~t~~~Ei~  189 (364)
T 4h27_A          113 RQLGVPATIVVPGTTPALTIERLKNEGATVKVVGE--LLDEAFELAKALAKNNPGWVYIPPFDDPLI-WEGHASIVKELK  189 (364)
T ss_dssp             HHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECS--STTHHHHHHHHHHHHSTTEEEECSSCSHHH-HHHHTHHHHHHH
T ss_pred             HHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhCCCeEEeCCCCCHHH-HHHHHHHHHHHH
Confidence            99999999999999999999999999999999984  589999999999998778999999999988 789999999999


Q ss_pred             hhhCCCCCEEEEecCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCccccC----CC------------------cc--cc
Q 025113          169 QDSGGKVDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSESAVLNG----GQ------------------RG--LF  223 (257)
Q Consensus       169 ~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigv~~~~~~~~~~----~~------------------~~--~~  223 (257)
                      +|+++.||+||+|+|+||+++|++.++|+++ |++++|+|||.+++++..    +.                  ++  .+
T Consensus       190 ~q~~~~~D~vvvpvG~GG~~aGi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~  269 (364)
T 4h27_A          190 ETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQAL  269 (364)
T ss_dssp             HHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHH
T ss_pred             HHhCCCCCEEEEcCCccHHHHHHHHHHHHhCCCCCeEEEEecCCChHHHHHHHCCCcccCCCCCcHHHHhCCCCCcHHHH
Confidence            9997679999999999999999999999886 889999999999876531    10                  01  13


Q ss_pred             eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          224 IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       224 ~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ++.+.+.+..+.|+|+|+.+++++|+++++++++
T Consensus       270 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~e  303 (364)
T 4h27_A          270 KLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVE  303 (364)
T ss_dssp             HHHTTSCEEEEEECHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHhcCCEEEEECHHHHHHHHHHHHHHCCCeEc
Confidence            4445566778899999999999999999999875

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*

Probab=100.00  E-value=3.6e-52  Score=374.90  Aligned_cols=243  Identities=19%  Similarity=0.185  Sum_probs=214.3

Q ss_pred             hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113            7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF   86 (257)
Q Consensus         7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~   86 (257)
                      .++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|     ..+||++|+||||+|+|+
T Consensus        36 ~~p~~~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptGSfKdRga~~~l~~a~~~g-----~~~vv~aSsGN~g~alA~  110 (372)
T 1p5j_A           36 FMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQG-----CAHFVCSSAGNAGMAAAY  110 (372)
T ss_dssp             ----CCCSSCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTT-----CCEEEECCSSHHHHHHHH
T ss_pred             hcccccCCCCCCCceEcHhhHHHhCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHcC-----CCEEEEeCCCHHHHHHHH
Confidence            344566789999999999988777889999999999999999999999999998876     367999999999999999


Q ss_pred             HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113           87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE  166 (257)
Q Consensus        87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E  166 (257)
                      +|+.+|++++||||+++++.|+++++.+||+|+.+++  +++++.+.+++++++.++++|++||+||.+ +.||.|+++|
T Consensus       111 aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~l~~~~~~~~~v~~~~n~~~-~~G~~t~~~E  187 (372)
T 1p5j_A          111 AARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE--LLDEAFELAKALAKNNPGWVYIPPFDDPLI-WEGHASIVKE  187 (372)
T ss_dssp             HHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--CHHHHHHHHHHHHHHSTTEEECCSSCCHHH-HHHHTHHHHH
T ss_pred             HHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhcCCcEEeCCCCCHHH-HhhHHHHHHH
Confidence            9999999999999999999999999999999999985  599999999999988668999999999998 7889999999


Q ss_pred             HHhhhCCCCCEEEEecCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCccccC----CC------------------cc--
Q 025113          167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSESAVLNG----GQ------------------RG--  221 (257)
Q Consensus       167 i~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigv~~~~~~~~~~----~~------------------~~--  221 (257)
                      |++|++..+|+||+|+|+||+++|++.++|+++ |+++||+|||.+++++..    +.                  ++  
T Consensus       188 i~~ql~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~  267 (372)
T 1p5j_A          188 LKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQ  267 (372)
T ss_dssp             HHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHH
T ss_pred             HHHHcCCCCCEEEEecCCchHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHcCCceecCCCceeecccCCCCCCHH
Confidence            999997669999999999999999999999986 889999999999875521    10                  01  


Q ss_pred             cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          222 LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       222 ~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .+++.+...++++.|+|+|+.+++++|+++++++++
T Consensus       268 ~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~e  303 (372)
T 1p5j_A          268 ALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVE  303 (372)
T ss_dssp             HHHHHHHSCEEEEEECHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHhhcCCEEEEECHHHHHHHHHHHHHHcCCeec
Confidence            234445567789999999999999999999999875

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*

Probab=100.00  E-value=1.9e-53  Score=376.80  Aligned_cols=246  Identities=20%  Similarity=0.327  Sum_probs=216.0

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++.    +..+||++|+||||+
T Consensus        12 ~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~KdRga~~~i~~~~~~~----~~~~vv~~ssGN~g~   87 (323)
T 1v71_A           12 DVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQ----RKAGVLTFSSGNHAQ   87 (323)
T ss_dssp             HHHHHHHHHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHH----HHHCEEECCSSHHHH
T ss_pred             HHHHHHHHHhccCCCCCceEhHhhHHHhCCeEEEEecCCCCcCCHHHHHHHHHHHHHHHhc----CCCeEEEeCCCcHHH
Confidence            3456788999999999999999988777889999999999999999999999998654321    135699999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|+++++|||.+++..|+++++.+||+|+.++++  ++++.+.+++++++. +++|++||+||.+ +.||.|
T Consensus        88 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~l~~~~-~~~~i~~~~n~~~-~~g~~t  163 (323)
T 1v71_A           88 AIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDREKMAKEISERE-GLTIIPPYDHPHV-LAGQGT  163 (323)
T ss_dssp             HHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECTT--TTCHHHHHHHHHHHH-TCBCCCSSSSHHH-HHHHTH
T ss_pred             HHHHHHHHcCCCEEEECCCCCcHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCCCcch-hhhHhH
Confidence            999999999999999999999999999999999999999964  677888888988876 6788999999988 689999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----C------------------Cc
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----G------------------QR  220 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~------------------~~  220 (257)
                      +++||++|++ ++|+||+|+|+||+++|++.++|+++|+++||+|||.+++++..    +                  .+
T Consensus       164 ~~~Ei~~q~~-~~d~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~  242 (323)
T 1v71_A          164 AAKELFEEVG-PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHL  242 (323)
T ss_dssp             HHHHHHHHHC-CCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSC
T ss_pred             HHHHHHHhcC-CCCEEEEecCCcHHHHHHHHHHHHcCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCcccccccCCCC
Confidence            9999999995 79999999999999999999999999999999999998765421    1                  01


Q ss_pred             c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +  .+++.+.+.++.+.|+|+|+.+++++|+++++++++
T Consensus       243 ~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~e  281 (323)
T 1v71_A          243 GNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVE  281 (323)
T ss_dssp             CHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCC
T ss_pred             cHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEc
Confidence            1  234666788999999999999999999999999875

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1

Probab=100.00  E-value=7.6e-53  Score=371.13  Aligned_cols=244  Identities=25%  Similarity=0.313  Sum_probs=214.9

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..+++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.  +     ..+||++|+||||+
T Consensus         6 ~i~~a~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~i~~l~--~-----~~~vv~~ssGN~g~   78 (311)
T 1ve5_A            6 DLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE--N-----PKGLLAVSSGNHAQ   78 (311)
T ss_dssp             HHHHHHHHHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSS--S-----CCCEEEECSSHHHH
T ss_pred             HHHHHHHHHhccCCCCCceechhhHHhhCCeEEEEecCCCCcCCcHHHHHHHHHHHhc--C-----CCeEEEECCCcHHH
Confidence            4567889999999999999999988777889999999999999999999999999876  2     25699999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++++||||++++..|+++++.+||+|+.++++  ++++.+.+++++++. +++|++||+||.+ +.||.|
T Consensus        79 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t  154 (311)
T 1ve5_A           79 GVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVT--AKNREEVARALQEET-GYALIHPFDDPLV-IAGQGT  154 (311)
T ss_dssp             HHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTCC--TTTHHHHHHHHHHHH-CCEECCSSSSHHH-HHHHHH
T ss_pred             HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CcEecCCCCCcch-hhhccH
Confidence            999999999999999999999999999999999999999854  788888999998876 7899999999988 689999


Q ss_pred             HHHHHHhhhC---CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC----------------
Q 025113          163 TGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ----------------  219 (257)
Q Consensus       163 ~~~Ei~~ql~---~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~----------------  219 (257)
                      +++||++|++   +++|+||+|+|+||+++|++.++|++.|+++||+|||.+++++..    +.                
T Consensus       155 ~~~Ei~~q~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~i~~gl~  234 (311)
T 1ve5_A          155 AGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVR  234 (311)
T ss_dssp             HHHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGC
T ss_pred             HHHHHHHHHHhcCCCCCEEEEccCchHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCccccCCCCCeeeCcCC
Confidence            9999999995   579999999999999999999999999999999999998765410    10                


Q ss_pred             ---cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 ---RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 ---~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                         ++  .+.+.+.+.++.+.|+|+|+.++++.|+++++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~e  277 (311)
T 1ve5_A          235 TLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVE  277 (311)
T ss_dssp             CSSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCC
T ss_pred             CCCccHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCceEc
Confidence               11  123456678999999999999999999999999875

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-51  Score=364.49  Aligned_cols=236  Identities=21%  Similarity=0.212  Sum_probs=210.0

Q ss_pred             cccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcC
Q 025113           13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARG   92 (257)
Q Consensus        13 ~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g   92 (257)
                      ..+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|     ..+||++|+||||+|+|++|+.+|
T Consensus         3 ~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptgS~K~R~a~~~l~~a~~~g-----~~~vv~~ssGN~g~alA~~a~~~G   77 (318)
T 2rkb_A            3 PFHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKG-----CRHLVCSSGGNAGIAAAYAARKLG   77 (318)
T ss_dssp             CSSCCCCEEEEHHHHHHHTSCEEEEEGGGSTTSBTTHHHHHHHHHHHHHTT-----CCEEEECCCSHHHHHHHHHHHHHT
T ss_pred             CCCccCCceehHhhHHHhCCeEEEEecCCCCCCCHHHHHHHHHHHHHHHcC-----CCEEEEECCchHHHHHHHHHHHcC
Confidence            357899999999988777889999999999999999999999999998876     367999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhC
Q 025113           93 YNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSG  172 (257)
Q Consensus        93 ~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~  172 (257)
                      ++++||||+++++.|+++++.+||+|+.+++  +++++.+.+++++++. +++|++||+||.+ +.||.|++.||++|++
T Consensus        78 ~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~  153 (318)
T 2rkb_A           78 IPATIVLPESTSLQVVQRLQGEGAEVQLTGK--VWDEANLRAQELAKRD-GWENVPPFDHPLI-WKGHASLVQELKAVLR  153 (318)
T ss_dssp             CCEEEEECTTCCHHHHHHHHHTTCEEEECCS--SHHHHHHHHHHHHHST-TEEECCSSCSHHH-HHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCChhh-ccchhHHHHHHHHhcC
Confidence            9999999999999999999999999999985  5999999999998875 8999999999988 7889999999999997


Q ss_pred             CCCCEEEEecCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCccccC----CC------------------cc--cceecc
Q 025113          173 GKVDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSESAVLNG----GQ------------------RG--LFIFIS  227 (257)
Q Consensus       173 ~~~d~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigv~~~~~~~~~~----~~------------------~~--~~~i~~  227 (257)
                      +.||+||+|+|+||+++|++.++|+++ |+++||+|||.+++++..    +.                  ++  .+++.+
T Consensus       154 ~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~  233 (318)
T 2rkb_A          154 TPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECMQ  233 (318)
T ss_dssp             SCCSEEEEECSSSHHHHHHHHHHHHHTCTTSCEEEEEETTBCHHHHHHHHTSCCBCSCCCSSCGGGCCSBCCHHHHHHHH
T ss_pred             CCCCEEEEeeCCCcHHHHHHHHHHHhCCCCCEEEEEecCCChHHHHHHHcCCcccCCCCCceecccCCCCCCHHHHHHHH
Confidence            679999999999999999999999885 889999999999865421    10                  00  123445


Q ss_pred             ccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          228 YLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       228 ~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ...++.+.|+|+|+.++++.|+++++++++
T Consensus       234 ~~~~~~~~v~d~e~~~a~~~l~~~~gi~~e  263 (318)
T 2rkb_A          234 VCKIHSEVVEDTEAVSAVQQLLDDERMLVE  263 (318)
T ss_dssp             HSCEEEEEECHHHHHHHHHHHHHHHCBCCC
T ss_pred             HcCCEEEEECHHHHHHHHHHHHHhcCcEEc
Confidence            566789999999999999999999999875

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2

Probab=100.00  E-value=4.2e-52  Score=385.24  Aligned_cols=239  Identities=26%  Similarity=0.364  Sum_probs=216.3

Q ss_pred             hhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA   89 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~   89 (257)
                      ++...+++|||++++.|++..|.+||+|+|++|||||||+|++.+++..+.+++.    ..+||++|+||||+|+|++|+
T Consensus        24 ~i~~~i~~TPL~~l~~Ls~~~g~~V~lK~E~lqPtgSfKdRgA~n~i~~l~~~~~----~~gVV~aSsGNhg~avA~aa~   99 (514)
T 1tdj_A           24 PVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQK----AHGVITASAGNHAQGVAFSSA   99 (514)
T ss_dssp             CGGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSC----SSSCEEEECSSSHHHHHHHHH
T ss_pred             hHhcccCCCCcEEchhhHHhhCCeEEEEECCCCCcccHHHHHHHHHHHHHHHhcC----CCEEEEECCcHHHHHHHHHHH
Confidence            6788899999999999988888999999999999999999999999998865443    356999999999999999999


Q ss_pred             HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHh
Q 025113           90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ  169 (257)
Q Consensus        90 ~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~  169 (257)
                      .+|++++||||.+++..|+++++.+||+|+.+++  +++++.+.+++++++. +++|++||+||.+ +.||+|++.||++
T Consensus       100 ~lGi~~~IvmP~~~p~~Kv~~~r~~GAeVvlv~~--~~dda~~~a~ela~e~-g~~~v~pfdnp~~-iaGqgTig~EI~e  175 (514)
T 1tdj_A          100 RLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NFDEAKAKAIELSQQQ-GFTWVPPFDHPMV-IAGQGTLALELLQ  175 (514)
T ss_dssp             HTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SHHHHHHHHHHHHHHH-CCEECCSSCCHHH-HHHHHHHHHHHHH
T ss_pred             HcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999984  6999999999999886 7899999999998 7899999999999


Q ss_pred             hhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----C------------------Ccc--ccee
Q 025113          170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----G------------------QRG--LFIF  225 (257)
Q Consensus       170 ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~------------------~~~--~~~i  225 (257)
                      |++ .+|+||+|+|+||+++|++.++|++.|+++||||||.+++++..    +                  .++  .+.+
T Consensus       176 Ql~-~~D~vvvpvGgGGliaGia~~lk~~~P~~kVIgVep~~a~~l~~sl~~G~~~~l~~v~tiadGiav~~~g~~~~~l  254 (514)
T 1tdj_A          176 QDA-HLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRL  254 (514)
T ss_dssp             HCT-TCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHHH
T ss_pred             HCC-CCCEEEEccCcHHHHHHHHHHHHHhCCCCEEEEEeccCChhHHHHHhcCCeeecCCccccccchhcCCCChHHHHH
Confidence            995 49999999999999999999999999999999999999876531    1                  011  2456


Q ss_pred             ccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          226 ISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       226 ~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .+.+.|+++.|+|+|+.+|++.|+++++++++
T Consensus       255 ~~~~vd~~v~Vsd~ei~~ai~~L~~~~givvE  286 (514)
T 1tdj_A          255 CQEYLDDIITVDSDAICAAMKDLFEDVRAVAE  286 (514)
T ss_dssp             HTTSCCEEEEECHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHhCCeEEEECHHHHHHHHHHHHHHcCeEEc
Confidence            77889999999999999999999999999875

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A

Probab=100.00  E-value=7.5e-51  Score=373.58  Aligned_cols=244  Identities=17%  Similarity=0.246  Sum_probs=214.3

Q ss_pred             hhcccCCCCceeccccc----CCC----CceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCc-------
Q 025113           11 VTELIGNTPMVYLNNVV----DGC----VARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK-------   69 (257)
Q Consensus        11 i~~~~~~TPl~~~~~l~----~~~----~~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~-------   69 (257)
                      .+.++++|||+++++|+    +.+    +.+||+|+|++|| |||||+|++.+++..     +.++|.+.||.       
T Consensus        72 ~~~g~~~TPL~~~~~l~~~l~~~~g~~~~~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~  151 (442)
T 3ss7_X           72 ATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLS  151 (442)
T ss_dssp             GGTTCCCCCEEECHHHHHHHHHHHTCCCCSEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGS
T ss_pred             ccCCCCCCCcEEhHhhhhHHHHhhCCCcCCeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhh
Confidence            34567899999999876    444    4799999999999 999999999999986     78899988876       


Q ss_pred             ---------eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHh
Q 025113           70 ---------TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKK  140 (257)
Q Consensus        70 ---------~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~  140 (257)
                               .+|+++|+||||+|+|++|+.+|++|+||||.+++..|+.+++.+||+|+.+++  +++++.+.+++++++
T Consensus       152 ~~~r~~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~--~~~~a~~~a~~~a~~  229 (442)
T 3ss7_X          152 PEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQ--DYGVAVEEGRKAAQS  229 (442)
T ss_dssp             HHHHHHHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESS--CHHHHHHHHHHHHHT
T ss_pred             hhhhhhccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHh
Confidence                     479999999999999999999999999999999999999999999999999995  599999999999988


Q ss_pred             CCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCC--------CCCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCC
Q 025113          141 TPDGYLLRQFENPANPKIHYETTGPEIWQDSGG--------KVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSE  211 (257)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~--------~~d~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~  211 (257)
                      .++++|+++ .|+.+++.||.|++.||++|++.        .||+||+|+|+||+++|++.++|++ .++++||+|||.+
T Consensus       230 ~~~~~~i~~-~n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~lk~~~~~~v~vigVep~~  308 (442)
T 3ss7_X          230 DPNCFFIDD-ENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTH  308 (442)
T ss_dssp             CTTEEECCT-TTCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEEEEEECSSSHHHHHHHHHHHHHHGGGEEEEEEEETT
T ss_pred             CCCceeCCC-CChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCEEEEEeCCchHHHHHHHHHHHhcCCCCEEEEEEeCC
Confidence            777889988 46666689999999999999842        3669999999999999999999997 8999999999999


Q ss_pred             CccccC----CC------------------------cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          212 SAVLNG----GQ------------------------RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       212 ~~~~~~----~~------------------------~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ++++..    +.                        ++  .+++++.+.++++.|+|+|+.++++.|+++++++++
T Consensus       309 ~~~~~~~~~~G~~~~~~v~~~g~~~~TiAdgl~v~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~L~~~eGi~~e  384 (442)
T 3ss7_X          309 SPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLE  384 (442)
T ss_dssp             CCHHHHHHHHSCGGGCBGGGGTCCCCCSCGGGCCSBCCSSHHHHHGGGCCEEEEECHHHHHHHHHHHHHHHCCCCC
T ss_pred             chHHHHHHhcCCCceeeeccCCCchhhHHhhcCCCCCchhHHHHHHhhCCeEEEECHHHHHHHHHHHHHHCCCeEc
Confidence            976421    10                        11  135667889999999999999999999999999875

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}

Probab=100.00  E-value=1.9e-51  Score=369.75  Aligned_cols=240  Identities=24%  Similarity=0.324  Sum_probs=215.4

Q ss_pred             HhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113            9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus         9 ~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      .++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+++.    ..+||++|+||||+|+|++|
T Consensus        52 ~~i~~~i~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfKdRga~~~i~~l~~~~~----~~~vv~assGN~g~a~A~aa  127 (366)
T 3iau_A           52 SPVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREEL----DKGVITASAGNHAQGVALAG  127 (366)
T ss_dssp             CCGGGTCCCCCEEECHHHHHHHTSEEEEEEGGGSTTSBTTHHHHHHHHHTSCHHHH----HHCEEEECSSHHHHHHHHHH
T ss_pred             HHHhhhcCCCCcEEhhhhhHhhCCEEEEEecCCCCCcchHHHHHHHHHHHHHHhCC----CCEEEEeCCCHHHHHHHHHH
Confidence            36778899999999999988888899999999999999999999999987644322    35699999999999999999


Q ss_pred             HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHH
Q 025113           89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW  168 (257)
Q Consensus        89 ~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~  168 (257)
                      +.+|++++||||++++..|+++++.+||+|+.++  .+++++.+.+++++++. +++|++||+||.+ +.||.|++.||+
T Consensus       128 ~~~G~~~~iv~P~~~~~~k~~~~~~~GA~V~~v~--~~~~~~~~~a~~~~~~~-~~~~i~~~~n~~~-i~g~~t~~~Ei~  203 (366)
T 3iau_A          128 QRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYG--KTFDEAQTHALELSEKD-GLKYIPPFDDPGV-IKGQGTIGTEIN  203 (366)
T ss_dssp             HHTTCCEEEEECTTCCHHHHHHHHHTTCEEEECC--SSHHHHHHHHHHHHHHH-TCEECCSSSSHHH-HHHHHHHHHHHH
T ss_pred             HHhCCceEEEeCCCCCHHHHHHHHHCCCeEEEEC--cCHHHHHHHHHHHHHhc-CCEecCCCCChHH-HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999  46999999999998887 8899999999988 699999999999


Q ss_pred             hhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----C------------------Ccc--cce
Q 025113          169 QDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----G------------------QRG--LFI  224 (257)
Q Consensus       169 ~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~------------------~~~--~~~  224 (257)
                      +|+ +.+|+||+|+|+||+++|++.++|.++|++++|+|||.+++++..    +                  .++  .++
T Consensus       204 ~q~-~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigVe~~~~~~l~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~  282 (366)
T 3iau_A          204 RQL-KDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFA  282 (366)
T ss_dssp             HHC-CSEEEEEEECSSSHHHHHHHHHHHHHSTTSEEEEEEEGGGCHHHHHHHHTSCCEESCCCCSSGGGCCSSCCHHHHH
T ss_pred             Hhc-CCCCEEEEccCchHHHHHHHHHHHHhCCCCeEEEEeecCChHHHHHHHcCCCCcCCCccchhhhhcCCCCcHHHHH
Confidence            999 689999999999999999999999999999999999999876531    0                  111  245


Q ss_pred             eccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          225 FISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       225 i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.+.+.++.+.|+|+|+.++++.|+++++++++
T Consensus       283 ~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~e  315 (366)
T 3iau_A          283 KCQELIDGMVLVANDGISAAIKDVYDEGRNILE  315 (366)
T ss_dssp             HHHHHCCEEEEECHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHhcCCCceeECHHHHHHHHHHHHHHcCcEEc
Confidence            667788999999999999999999999999875

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A

Probab=100.00  E-value=1.3e-50  Score=362.51  Aligned_cols=240  Identities=20%  Similarity=0.206  Sum_probs=212.5

Q ss_pred             hHhhhcccCCCCceec--ccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHH
Q 025113            8 KRDVTELIGNTPMVYL--NNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA   85 (257)
Q Consensus         8 ~~~i~~~~~~TPl~~~--~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA   85 (257)
                      .++++..+++|||+++  ++|++..|.+||+|+|++|||||||||++.+++.++.++|.     .+||++|+||||+|+|
T Consensus        19 ~~~v~~~~g~TPL~~~~~~~l~~~~g~~v~~K~E~~~ptgS~KdR~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA   93 (351)
T 3aey_A           19 TPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVACASTGNTAASAA   93 (351)
T ss_dssp             SCCCCSCCCCCCEEECCCCHHHHTTTCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----SEEEESCSSHHHHHHH
T ss_pred             CCceecCCCCCCeeecCchhhHHHhCCeEEEEecCCCCcccHHHHHHHHHHHHHHhcCC-----CEEEEeCCCHHHHHHH
Confidence            3578999999999999  88888788899999999999999999999999999998874     6799999999999999


Q ss_pred             HHHHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHH
Q 025113           86 FIAAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG  164 (257)
Q Consensus        86 ~~a~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~  164 (257)
                      ++|+.+|++++||||++ ++..|+++++.+||+|+.+++  +++++.+.+++++++. +++|+++ +||.+ +.||.|++
T Consensus        94 ~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~  168 (351)
T 3aey_A           94 AYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALRLTQKLTEAF-PVALVNS-VNPHR-LEGQKTLA  168 (351)
T ss_dssp             HHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-SEEECST-TCHHH-HHHHHHHH
T ss_pred             HHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEecCC-CCccc-eeeeeeHH
Confidence            99999999999999997 999999999999999999996  4999999999999887 5888887 88888 68999999


Q ss_pred             HHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccCCC----------------ccc
Q 025113          165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLNGGQ----------------RGL  222 (257)
Q Consensus       165 ~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~~~~----------------~~~  222 (257)
                      +||++|++..||+||+|+|+||+++|++.++|+..+      .++||+|||.+++++..+.                +..
T Consensus       169 ~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~  248 (351)
T 3aey_A          169 FEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPAS  248 (351)
T ss_dssp             HHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHHTSCSSCCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCSSCTT
T ss_pred             HHHHHHcCCCCCEEEEecCchHHHHHHHHHHHHHHhccccCCCCeEEEEecCCCChhhcCcccCCccchhHhhcCCCCCC
Confidence            999999976699999999999999999999998753      6999999999875542111                111


Q ss_pred             ce----eccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          223 FI----FISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       223 ~~----i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.    +.+.+.++.+.|+|+|+.+++++|+++++++++
T Consensus       249 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~e  287 (351)
T 3aey_A          249 WQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCE  287 (351)
T ss_dssp             HHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBC
T ss_pred             HHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCEEEC
Confidence            11    345567899999999999999999999999875

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1e-50  Score=364.26  Aligned_cols=240  Identities=23%  Similarity=0.246  Sum_probs=212.5

Q ss_pred             HhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113            9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus         9 ~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a   88 (257)
                      ++++..+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|.     .+||++|+||||+|+|++|
T Consensus        30 ~~v~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~alA~~a  104 (360)
T 2d1f_A           30 TPVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAVLCASTGNTSASAAAYA  104 (360)
T ss_dssp             CCCCCCCCCCCEEECHHHHHHHSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----SEEEECCSSHHHHHHHHHH
T ss_pred             CccccccCCCCCeechhhHHHhCCeEEEEECCCCCCcCHHHHHHHHHHHHHHHCCC-----CEEEEeCCcHHHHHHHHHH
Confidence            56788999999999999987778899999999999999999999999999998774     6799999999999999999


Q ss_pred             HHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113           89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI  167 (257)
Q Consensus        89 ~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei  167 (257)
                      +.+|++++||||++ ++..|+++++.+||+|+.+++  +++++.+.+++++++.++.+|+++ +||.+ +.||.|+++||
T Consensus       105 ~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~~~~~~i~~-~n~~~-~~g~~t~~~Ei  180 (360)
T 2d1f_A          105 ARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG--NFDDCLELARKMAADFPTISLVNS-VNPVR-IEGQKTAAFEI  180 (360)
T ss_dssp             HHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSS--CHHHHHHHHHHHHHHCTTEEECST-TCHHH-HHHHTHHHHHH
T ss_pred             HHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCeEEcCC-CChhh-hhhHHHHHHHH
Confidence            99999999999998 999999999999999999995  499999999999988855888888 88888 67999999999


Q ss_pred             HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccCCC----------------cccc--
Q 025113          168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLNGGQ----------------RGLF--  223 (257)
Q Consensus       168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~~~~----------------~~~~--  223 (257)
                      ++|++..||+||+|+|+||+++|++.++++..+      .++||+|||.+++++..+.                +..+  
T Consensus       181 ~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~~~~  260 (360)
T 2d1f_A          181 VDVLGTAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSPASWTS  260 (360)
T ss_dssp             HHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHSSCCSSCCCSCGGGCCSSCTTHHH
T ss_pred             HHHcCCCCCEEEEeCCchHHHHHHHHHHHHHHhccccccCceEEEEecCCCCHHhcCCccCCccchHHHhCCCCCCcHHH
Confidence            999976799999999999999999999998753      6899999999876542111                1111  


Q ss_pred             --eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          224 --IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       224 --~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                        .+++.+.++++.|+|+|+.+++++|+++++++++
T Consensus       261 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~eGi~~e  296 (360)
T 2d1f_A          261 AVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVE  296 (360)
T ss_dssp             HHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBC
T ss_pred             HHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCeeEC
Confidence              2345567899999999999999999999999875

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}

Probab=100.00  E-value=1.6e-50  Score=362.10  Aligned_cols=240  Identities=20%  Similarity=0.183  Sum_probs=212.2

Q ss_pred             hHhhhcccCCCCceecccccCCCCce--EEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHH
Q 025113            8 KRDVTELIGNTPMVYLNNVVDGCVAR--IAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA   85 (257)
Q Consensus         8 ~~~i~~~~~~TPl~~~~~l~~~~~~~--l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA   85 (257)
                      .++++..+++|||+++++|++..|.+  ||+|+|++|||||||||++.+++.++.++|.     .+||++|+||||+|+|
T Consensus        21 ~~~v~~~~g~TPL~~~~~l~~~~g~~~~i~~K~E~~~ptGS~KdR~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA   95 (352)
T 2zsj_A           21 TPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----RAVICASTGNTSASAA   95 (352)
T ss_dssp             CCCCCCCCCCCCEEECHHHHHHHTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHH
T ss_pred             CCceecccCCCCCeehHHHHHHhCCCceEEEEECCCCCCccHHHHHHHHHHHHHHhcCC-----CEEEEeCCchHHHHHH
Confidence            35788999999999999988777777  9999999999999999999999999998874     6799999999999999


Q ss_pred             HHHHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHH
Q 025113           86 FIAAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG  164 (257)
Q Consensus        86 ~~a~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~  164 (257)
                      ++|+.+|++++||||++ ++..|+++++.+||+|+.+++  +++++.+.+++++++. +++|+++ +||.+ +.||.|++
T Consensus        96 ~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~  170 (352)
T 2zsj_A           96 AYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQG--TFDDALNIVRKIGENF-PVEIVNS-VNPYR-IEGQKTAA  170 (352)
T ss_dssp             HHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESS--CHHHHHHHHHHHHHHS-SEEECST-TCTHH-HHHHTHHH
T ss_pred             HHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHc-CcEECCC-CCcch-hhhHhHHH
Confidence            99999999999999997 999999999999999999996  5999999999999887 5888887 88888 78999999


Q ss_pred             HHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccCCC----------------ccc
Q 025113          165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLNGGQ----------------RGL  222 (257)
Q Consensus       165 ~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~~~~----------------~~~  222 (257)
                      +||++|++..||+||+|+|+||+++|++.++|+..+      .++||+|||.+++++..+.                +..
T Consensus       171 ~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~  250 (352)
T 2zsj_A          171 FEICDTLGEAPDYHFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNPYS  250 (352)
T ss_dssp             HHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEETTBCHHHHTSCCSSCCCSCGGGCCSSCTT
T ss_pred             HHHHHHcCCCCCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCcHHhcCCccCCCcchhHHhcCCCCCc
Confidence            999999976699999999999999999999998753      6899999999976542111                111


Q ss_pred             ce----eccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          223 FI----FISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       223 ~~----i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.    +.+.+.++.+.|+|+|+.++++.|+++++++++
T Consensus       251 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~e  289 (352)
T 2zsj_A          251 WKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCE  289 (352)
T ss_dssp             HHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBC
T ss_pred             HHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCeeEC
Confidence            21    245567789999999999999999999999875

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*

Probab=100.00  E-value=5e-50  Score=357.46  Aligned_cols=247  Identities=19%  Similarity=0.146  Sum_probs=212.6

Q ss_pred             hhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCC--CCChhhHHHHHHHHHHHHcCCCCCCceEEEEeC--CCh
Q 025113            4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEP--CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVT--SGN   79 (257)
Q Consensus         4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~p--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s--sGN   79 (257)
                      .+..+++++..+++|||++++.|++.+|.+||+|+|++||  +||||+|++.+++.++.++|.     ++||++|  +||
T Consensus        19 ~~~a~~ri~~~~~~TPL~~~~~l~~~~g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~-----~~vv~~s~tsGN   93 (342)
T 4d9b_A           19 HLTRFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGA-----DTLITAGAIQSN   93 (342)
T ss_dssp             GGGGSCCCCSSCSCCCEEECHHHHHHHTSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTC-----CEEEEEEETTCH
T ss_pred             hhccCCcccccCCCCceeEhhhhHHhhCCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCC-----CEEEEcCCcccH
Confidence            3567889999999999999999987778899999999999  999999999999999999885     6788885  799


Q ss_pred             HHHHHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHHCCCEEEEECCCCCHHHHHH-HHHHHHHhCCCeEEeC--
Q 025113           80 TGVGLAFIAAARGYNLIIVMPSTCSM--------ERRIVLRALGAEIILADSALRFEEILE-KGEEILKKTPDGYLLR--  148 (257)
Q Consensus        80 ~~~alA~~a~~~g~~~~i~vp~~~~~--------~~~~~l~~~Ga~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--  148 (257)
                      ||+|+|++|+.+|++++||||.+++.        .|++.++.+||+|+.+++..+++++.+ .++++.++. +..|+.  
T Consensus        94 ~g~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~p~  172 (342)
T 4d9b_A           94 HVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQG-FRPYVIPV  172 (342)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCSSHHHHHHHHHHHHHHTT-CCEEECCG
T ss_pred             HHHHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchhhHHHHHHHHHHHHHhcC-CceEEeCC
Confidence            99999999999999999999997763        589999999999999997655666654 567776665 333443  


Q ss_pred             CCCCCcchHhhHhhHHHHHHhhhC--CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC---------
Q 025113          149 QFENPANPKIHYETTGPEIWQDSG--GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG---------  217 (257)
Q Consensus       149 ~~~~~~~~~~g~~t~~~Ei~~ql~--~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~---------  217 (257)
                      ++.|+.+ ..||.|++.||++|++  .++|+||+|+|||||++|++.++|++.|+++||||||.+++.+..         
T Consensus       173 ~~~n~~~-~~G~~t~~~EI~~q~~~~~~~d~vv~~vGtGGt~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~t  251 (342)
T 4d9b_A          173 GGSSALG-AMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQA  251 (342)
T ss_dssp             GGCSHHH-HHHHHHHHHHHHHHHTTTCCCCEEEEEESSSHHHHHHHHHHHHHCTTSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred             CCCChHH-HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCHHHHHHHHHHHhhCCCCeEEEEEecCcHHHHHHHHHHHHHH
Confidence            4456655 5699999999999996  479999999999999999999999999999999999999875432         


Q ss_pred             -----C--CcccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          218 -----G--QRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       218 -----~--~~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                           +  ...++.+.+.+.|+.+.|+|+|+.+++++|+++++++++
T Consensus       252 ~a~gl~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e  298 (342)
T 4d9b_A          252 IAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLD  298 (342)
T ss_dssp             HHHHTTCCCCCCCEEECTTSTTCTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHcCCCCccceEEEecCCCceEecCCHHHHHHHHHHHHhcCcccc
Confidence                 1  223567788899999999999999999999999999874

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*

Probab=100.00  E-value=1.1e-49  Score=353.04  Aligned_cols=246  Identities=21%  Similarity=0.193  Sum_probs=215.5

Q ss_pred             hhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCC--CCChhhHHHHHHHHHHHHcCCCCCCceEEEEe--CCChH
Q 025113            5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEP--CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGNT   80 (257)
Q Consensus         5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~p--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~   80 (257)
                      +..++++...+++|||+++++|++..|.+||+|+|++||  +||||+|++.+++.++.++|.     .+||++  |+|||
T Consensus         9 l~~~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~-----~~vv~~G~ssGN~   83 (325)
T 1j0a_A            9 LAKFPRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGA-----DVVITVGAVHSNH   83 (325)
T ss_dssp             HTTCCCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTC-----SEEEEECCTTCHH
T ss_pred             hccCCCcccccCCCCceEhhhhhhhhCCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCCcchHH
Confidence            456778999999999999999887778899999999999  999999999999999999885     568886  99999


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCCCH---HHHHHHHHHHHHhCCCeE-EeCCCCCCcc
Q 025113           81 GVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRF---EEILEKGEEILKKTPDGY-LLRQFENPAN  155 (257)
Q Consensus        81 ~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  155 (257)
                      |+|+|++|+.+|++++||||+++ +..|++.++.+||+|+.+++..+.   +++.+.+++++++.+..+ +..++.|+.+
T Consensus        84 g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~n~~~  163 (325)
T 1j0a_A           84 AFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIG  163 (325)
T ss_dssp             HHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHH
T ss_pred             HHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcchhhhhhHHHHHHHHHHHHcCCceEEEcCCCCCHHH
Confidence            99999999999999999999999 999999999999999999975322   266778888888764433 4566788877


Q ss_pred             hHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC--------------CCc-
Q 025113          156 PKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG--------------GQR-  220 (257)
Q Consensus       156 ~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~--------------~~~-  220 (257)
                       ..||.|++.||++|+++++|+||+|+|||||++|++.++|+++|+++||+|||.+++++..              +.+ 
T Consensus       164 -~~g~~t~~~Ei~~q~~~~~d~vv~~vGtGGt~~Gi~~~lk~~~~~~~vigVe~~~~~~~~~~~~~t~~~~~~~~~g~~~  242 (325)
T 1j0a_A          164 -TLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKV  242 (325)
T ss_dssp             -HTHHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred             -HHHHHHHHHHHHHhhCCCCCEEEEeCCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHhcCCCC
Confidence             5689999999999997689999999999999999999999999999999999999976532              112 


Q ss_pred             -ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 -GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 -~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       .++.+.+.+.|+ +.|+|+|+.+++++|+++++++++
T Consensus       243 ~~~~~~~~~~~~~-~~v~d~e~~~a~~~l~~~~gi~~e  279 (325)
T 1j0a_A          243 EVRPELYDYSFGE-YGKITGEVAQIIRKVGTREGIILD  279 (325)
T ss_dssp             CSCCEEEECSTTS-TTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred             CCCcEEecCcccC-CCCCCHHHHHHHHHHHHhhCcccc
Confidence             246777888999 999999999999999999999874

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*

Probab=100.00  E-value=3.1e-50  Score=358.76  Aligned_cols=247  Identities=15%  Similarity=0.102  Sum_probs=214.7

Q ss_pred             hhhhHhhhcccCCCCceecccccCCC-C-ceEEEEeCCCC-C--CCChhhHHHHHHHHHHHHcCCCCCCceEEEE--eCC
Q 025113            5 NAIKRDVTELIGNTPMVYLNNVVDGC-V-ARIAAKLETME-P--CSSVKDRIAYSMIKDAEDKGLITPGKTTLIE--VTS   77 (257)
Q Consensus         5 ~~~~~~i~~~~~~TPl~~~~~l~~~~-~-~~l~~K~E~~~-p--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~--~ss   77 (257)
                      +..++++...+++|||+++++|++.+ | .+||+|+|++| |  +||||+|++.+++.++.++|.     .+||+  +|+
T Consensus         3 l~~~~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~-----~~vv~~G~ss   77 (341)
T 1f2d_A            3 VAKFAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDY-----THLVSIGGRQ   77 (341)
T ss_dssp             TTSSCCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCC-----SEEEEEEETT
T ss_pred             cccCCCcccCCCCCcceeHHhHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCCcc
Confidence            34567889999999999999998777 7 89999999999 9  999999999999999998875     57999  999


Q ss_pred             ChHHHHHHHHHHHcCCcEEEEeCCCCC-----HH------HHHHHHHCCCEEEEECCCCCH---HHHHHHHHHHHHhCCC
Q 025113           78 GNTGVGLAFIAAARGYNLIIVMPSTCS-----ME------RRIVLRALGAEIILADSALRF---EEILEKGEEILKKTPD  143 (257)
Q Consensus        78 GN~~~alA~~a~~~g~~~~i~vp~~~~-----~~------~~~~l~~~Ga~v~~~~~~~~~---~~~~~~~~~~~~~~~~  143 (257)
                      ||||+|+|++|+.+|++|+||||.+++     +.      |++.++.+||+|+.+++....   +++.+.+++++++.+.
T Consensus        78 GN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~  157 (341)
T 1f2d_A           78 SNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHK  157 (341)
T ss_dssp             CHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999877     33      999999999999999964322   3677788888887654


Q ss_pred             eE-EeCC-CCCCcchHhhHhhHHHHHHhhhC---CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC-
Q 025113          144 GY-LLRQ-FENPANPKIHYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG-  217 (257)
Q Consensus       144 ~~-~~~~-~~~~~~~~~g~~t~~~Ei~~ql~---~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~-  217 (257)
                      .+ +++| |+||.+ ..||.|++.||++|++   .+||+||+|+|||||++|++.+++++.|+++||+|||.+++++.. 
T Consensus       158 ~~~i~~~~~~np~~-~~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~  236 (341)
T 1f2d_A          158 PYPIPAGCSEHKYG-GLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKE  236 (341)
T ss_dssp             EEEECGGGTTSTTT-TTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHH
T ss_pred             EEEeCCCcCCCCcc-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHH
Confidence            44 5588 999999 6789999999999985   479999999999999999999999999999999999999875431 


Q ss_pred             -------------CCc---ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          218 -------------GQR---GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       218 -------------~~~---~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                                   +.+   ..+.+.+.+.++.+.|+|+|+.+++++|+++++++++
T Consensus       237 ~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~egi~~e  292 (341)
T 1f2d_A          237 QTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTD  292 (341)
T ss_dssp             HHHHHHHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHcCCCCCcCeEEEecCcccceEecCCHHHHHHHHHHHHHcCCccc
Confidence                         111   2346777888999999999999999999999999874

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1

Probab=100.00  E-value=1.3e-48  Score=352.64  Aligned_cols=237  Identities=24%  Similarity=0.274  Sum_probs=206.8

Q ss_pred             cCCCCceecccccCCCCceEEEEeCCCCC-CCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCC
Q 025113           15 IGNTPMVYLNNVVDGCVARIAAKLETMEP-CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGY   93 (257)
Q Consensus        15 ~~~TPl~~~~~l~~~~~~~l~~K~E~~~p-tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~   93 (257)
                      ..+|||+++++|++. |.+||+|+|++|| |||||+|++.+++..+.  +.+++| .+|+++|+||||+|+|++|+.+|+
T Consensus        94 ~~~TPL~~l~~Ls~~-g~~IylK~E~lnp~tGS~K~R~a~~~i~~l~--~a~~~g-~~Iv~assGNhG~AlA~aaa~~Gl  169 (389)
T 1wkv_A           94 GKPTPLVRSRLQLPN-GVRVWLKLEWYNPFSLSVKDRPAVEIISRLS--RRVEKG-SLVADATSSNFGVALSAVARLYGY  169 (389)
T ss_dssp             SCSCCEEECCCCCST-TEEEEEEEGGGSTTTSBTTHHHHHHHHHHHT--TTSCTT-CEEEEECCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEccccccC-CCeEEEEEcCCCCCcCChHHHHHHHHHHHHH--HHHhcC-CEEEEECCcHHHHHHHHHHHHcCC
Confidence            468999999999876 7899999999999 99999999999999855  444555 679999999999999999999999


Q ss_pred             cEEEEeCCCCCHHHHHHHHHCCCEEE-EECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhC
Q 025113           94 NLIIVMPSTCSMERRIVLRALGAEII-LADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSG  172 (257)
Q Consensus        94 ~~~i~vp~~~~~~~~~~l~~~Ga~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~  172 (257)
                      +|+||||+.++..++.+|+.+||+|+ .++. .+++++++.+++++++. +++|++||+||.+++.||+|++.||++|+.
T Consensus       170 ~~~ivmp~~~~~~k~~~~~~~GAeVv~~v~~-~~~~da~~~a~~~~~~~-g~~~~~p~~N~~~~~~~~~t~g~Ei~~Q~~  247 (389)
T 1wkv_A          170 RARVYLPGAAEEFGKLLPRLLGAQVIVDPEA-PSTVHLLPRVMKDSKNE-GFVHVNQFYNDANFEAHMRGTAREIFVQSR  247 (389)
T ss_dssp             EEEEEEETTSCHHHHHHHHHTTCEEEEETTC-SSSGGGHHHHHHHHHHH-CCEECCTTTCHHHHHHHHHTHHHHHHHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcc-CcEecCcCCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 7773 36888999998888775 789999999999989999999999999984


Q ss_pred             ---CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCc---ccceeccccCC-eEEEeChHHHHHHH
Q 025113          173 ---GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR---GLFIFISYLFR-SFVLVDDGAVVHLH  245 (257)
Q Consensus       173 ---~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~---~~~~i~~~~~~-~~v~v~d~e~~~a~  245 (257)
                         ..||+||+|+|+||+++|++.+|+++.|+++||||||.+++++.+-..   ++..+.....| +++.|+|+|+.+++
T Consensus       248 ~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~~~~~l~Gi~~i~~~~~~~~~~~~dg~~~~Vsd~ea~~a~  327 (389)
T 1wkv_A          248 RGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINMLDISYTLAEVTLEEAMEAV  327 (389)
T ss_dssp             HTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTCCCGGGCCSHHHHSCCCCEEEEECHHHHHHHH
T ss_pred             hcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecCCCCccccccccCCcchhhhhheeccEEEEECHHHHHHHH
Confidence               369999999999999999999999999999999999999876654111   11112233456 89999999999999


Q ss_pred             HHHHhhcCeecC
Q 025113          246 NYLLLHIFTLVC  257 (257)
Q Consensus       246 ~~l~~~~~~~v~  257 (257)
                      +.|+++++++++
T Consensus       328 ~~l~~~eGi~~~  339 (389)
T 1wkv_A          328 VEVARSDGLVIG  339 (389)
T ss_dssp             HHHHHHHSCCBC
T ss_pred             HHHHHHcCCeEC
Confidence            999999999875

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*

Probab=100.00  E-value=3.9e-49  Score=358.29  Aligned_cols=242  Identities=19%  Similarity=0.195  Sum_probs=207.8

Q ss_pred             cccCCCCceecccccCCCC-ceEEEEeCCCC-CCCChhhHHHHHHHHHHHH--cCC----CC-------CCce-EEEEeC
Q 025113           13 ELIGNTPMVYLNNVVDGCV-ARIAAKLETME-PCSSVKDRIAYSMIKDAED--KGL----IT-------PGKT-TLIEVT   76 (257)
Q Consensus        13 ~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~-ptGS~K~R~a~~~~~~a~~--~g~----~~-------~g~~-~vv~~s   76 (257)
                      ..+++|||+++++|++.+| .+||+|+|++| ||||||+|++.+++.++.+  .|.    +.       .+.. +||++|
T Consensus        40 ~~~~~TPL~~~~~l~~~~g~~~i~~K~E~~~~ptgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~~~~~vv~aS  119 (398)
T 4d9i_A           40 AGYRPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTT  119 (398)
T ss_dssp             TTCCCCCEEECHHHHHHHTSSEEEEEEGGGSTTTTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCSCCCEEEEEC
T ss_pred             CCCCCCCceehHHHHHHhCCCcEEEEECCCCCCCCcchhhhhHHHHHHHHHHhhcccccccchhhhhhhccCCCEEEEEC
Confidence            4578999999999988888 49999999999 9999999999999999842  221    00       1134 799999


Q ss_pred             CChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCC-----CC
Q 025113           77 SGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ-----FE  151 (257)
Q Consensus        77 sGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  151 (257)
                      +||||+|+|++|+.+|++|+||||++++..|++.++.+||+|+.+++  +++++.+.+++++++. +++|++|     |+
T Consensus       120 sGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~~~a~~~a~~~~~~~-g~~~v~~~~~~g~~  196 (398)
T 4d9i_A          120 DGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDM--NYDDTVRLTMQHAQQH-GWEVVQDTAWEGYT  196 (398)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSS--CHHHHHHHHHHHHHHH-TCEECCSSCBTTBC
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEecCcccCCcC
Confidence            99999999999999999999999999999999999999999999995  5999999999998887 8899986     65


Q ss_pred             -CCcchHhhHhhHHHHHHhhhCCC---CCEEEEecCchhHHHHHHHHHHhc--CCCcEEEEEeCCCCccccC----C---
Q 025113          152 -NPANPKIHYETTGPEIWQDSGGK---VDAFISGIGTGGTVTGAGRFLKEN--NPDIKVYGVEPSESAVLNG----G---  218 (257)
Q Consensus       152 -~~~~~~~g~~t~~~Ei~~ql~~~---~d~iv~pvG~Gg~~aGi~~~~k~~--~~~~~vigv~~~~~~~~~~----~---  218 (257)
                       |+.+.+.||.|++.||++|+++.   ||+||+|+|+||+++|++.+++++  .++++||+|||.+++++..    +   
T Consensus       197 ~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG~GG~~aGi~~~~k~~~~~~~~~vigVep~~~~~~~~s~~~g~~~  276 (398)
T 4d9i_A          197 KIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIV  276 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSSHHHHHHHHHHHHHHCTTSCEEEEEEETTSCHHHHHHHHTSCC
T ss_pred             CCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCCchHHHHHHcCCce
Confidence             45666899999999999998543   999999999999999999999876  4789999999999876631    1   


Q ss_pred             ----------------Ccc--cceeccccCCeEEEeChHHHHHHHHHHHhhcC----eecC
Q 025113          219 ----------------QRG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIF----TLVC  257 (257)
Q Consensus       219 ----------------~~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~----~~v~  257 (257)
                                      .|+  .+++++.+.++++.|+|+|+.+++++|+++++    ++++
T Consensus       277 ~~~~~~~tia~gl~~~~p~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~eG~~~~i~~e  337 (398)
T 4d9i_A          277 NVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISG  337 (398)
T ss_dssp             CC------CCTTCCCSSCCHHHHHHHHHHCCEEEEECTHHHHHHHHHHHSCSTTCCCCCCC
T ss_pred             ecCCCCCceeccccCCCCCHHHHHHHHHcCCeEEEECHHHHHHHHHHHHHhhCCCCcEEEC
Confidence                            111  14455778899999999999999999999987    8764

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*

Probab=100.00  E-value=1.6e-48  Score=347.27  Aligned_cols=244  Identities=18%  Similarity=0.127  Sum_probs=208.2

Q ss_pred             hhhhHhhhcccCCCCceecccccCCC-C-ceEEEEeCCCC-C--CCChhhHHHHHHHHHHHHcCCCCCCceEEEE--eCC
Q 025113            5 NAIKRDVTELIGNTPMVYLNNVVDGC-V-ARIAAKLETME-P--CSSVKDRIAYSMIKDAEDKGLITPGKTTLIE--VTS   77 (257)
Q Consensus         5 ~~~~~~i~~~~~~TPl~~~~~l~~~~-~-~~l~~K~E~~~-p--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~--~ss   77 (257)
                      +..++++...+++|||+++++|++.+ + .+||+|+|++| |  |||||+|++.+++.++.++|.     .+||+  +|+
T Consensus         3 ~~~~~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~g~-----~~vv~~Gass   77 (338)
T 1tzj_A            3 LQRFPRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGC-----DTLVSIGGIQ   77 (338)
T ss_dssp             GGGSCCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHTTC-----CEEEEEEETT
T ss_pred             cccCCccccCCCCCccEEHHHHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCCch
Confidence            45567899999999999999988777 7 79999999997 8  999999999999999998875     56888  799


Q ss_pred             ChHHHHHHHHHHHcCCcEEEEeCCCCCHH--------HHHHHHHCCCEEEEECCCCCHHH-----HHHHHHHHHHhCCCe
Q 025113           78 GNTGVGLAFIAAARGYNLIIVMPSTCSME--------RRIVLRALGAEIILADSALRFEE-----ILEKGEEILKKTPDG  144 (257)
Q Consensus        78 GN~~~alA~~a~~~g~~~~i~vp~~~~~~--------~~~~l~~~Ga~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~  144 (257)
                      ||||+|+|++|+.+|++++||||++++..        |+++++.+||+|+.+++.  +++     +.+.+++++++.+..
T Consensus        78 GN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~~~~~~a~~l~~~~~~~  155 (338)
T 1tzj_A           78 SNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG--FDIGFRRSWEDALESVRAAGGKP  155 (338)
T ss_dssp             CHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC---------CHHHHHHHHHHHTTCCE
T ss_pred             hHHHHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeCCc--chhhHHHHHHHHHHHHHhcCCce
Confidence            99999999999999999999999987654        999999999999999964  333     467788888776444


Q ss_pred             EE-eCC-CCCCcchHhhHhhHHHHHHhhhC---CCCCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCccccC-
Q 025113          145 YL-LRQ-FENPANPKIHYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESAVLNG-  217 (257)
Q Consensus       145 ~~-~~~-~~~~~~~~~g~~t~~~Ei~~ql~---~~~d~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~~~~-  217 (257)
                      ++ .++ ++||.+ ..||.|++.||++|+.   .++|+||+|+|+|||++|++.++|++ .|+ +||+|||.+++.+.. 
T Consensus       156 ~~~p~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~~Gi~~~~k~~g~~~-~vigve~~~~~~~~~~  233 (338)
T 1tzj_A          156 YAIPAGCSDHPLG-GLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRAD-RVIGVDASAKPAQTRE  233 (338)
T ss_dssp             EECCGGGTSSTTT-TTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGG-GEEEEECSSCHHHHHH
T ss_pred             EEeCCCcCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHHHHHHHHHHhhCCCC-eEEEEEccCchHHHHH
Confidence            54 456 899998 6789999999999984   47999999999999999999999998 888 999999999865421 


Q ss_pred             ---------------CC---cccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          218 ---------------GQ---RGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       218 ---------------~~---~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                                     +.   +..+.+.+.+.++.+.|+|+|+.+++++|+++++++++
T Consensus       234 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~e  291 (338)
T 1tzj_A          234 QITRIARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTD  291 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHcCCCCCCCcccEEEecCcccceeecCCHHHHHHHHHHHHhcCCccc
Confidence                           11   12346777788999999999999999999999999875

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*

Probab=100.00  E-value=7.7e-46  Score=343.64  Aligned_cols=238  Identities=16%  Similarity=0.118  Sum_probs=200.7

Q ss_pred             hhcccCCCCceecccccCC-CC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHH---cCCCCCCceEEEEeCCChHHHHHH
Q 025113           11 VTELIGNTPMVYLNNVVDG-CV-ARIAAKLETMEPCSSVKDRIAYSMIKDAED---KGLITPGKTTLIEVTSGNTGVGLA   85 (257)
Q Consensus        11 i~~~~~~TPl~~~~~l~~~-~~-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~---~g~~~~g~~~vv~~ssGN~~~alA   85 (257)
                      +..++++|||+++++|++. +| .+||+|+|++|||||||||++.+++..+.+   ++.   +..+||++|+||||.|+|
T Consensus       124 v~l~~g~TPLv~l~~L~~~~lg~~~l~~K~E~~nPTGSFKDRga~~~~~~l~~~~~~~~---g~~~Vv~aSsGNtG~AlA  200 (486)
T 1e5x_A          124 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKR---PVVGVGCASTGDTSAALS  200 (486)
T ss_dssp             CCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTC---CCCEEEECCCSHHHHHHH
T ss_pred             ccccCCCCCcEECcccchhhcCCCcEEEeeccCCCccCHHHHHHHHHHHHHHHHHHcCC---CCeEEEEcCCCHHHHHHH
Confidence            4556889999999998876 66 489999999999999999999998877654   331   246799999999999999


Q ss_pred             HHHHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHH
Q 025113           86 FIAAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG  164 (257)
Q Consensus        86 ~~a~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~  164 (257)
                      ++|+++|++++||||.+ ++..|+.+++.+||+|+.+++  +|+++.+.+++++++. ++++++++ ||.+ +.||.|++
T Consensus       201 ~~a~~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~vi~v~g--~~dd~~~~a~~l~~~~-~~~~vns~-N~~~-i~gq~t~~  275 (486)
T 1e5x_A          201 AYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDGCMKLIREITAEL-PIYLANSL-NSLR-LEGQKTAA  275 (486)
T ss_dssp             HHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-CEEEGGGS-HHHH-HHHHTHHH
T ss_pred             HHHHHcCCeEEEEECCCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHhcC-CEEEeCCC-CHHH-HHHHHHHH
Confidence            99999999999999996 999999999999999999995  4999999999998887 78888887 8888 78899999


Q ss_pred             HHHHhhhCC-CCCEEEEecCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccccC----CC--------------
Q 025113          165 PEIWQDSGG-KVDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLNG----GQ--------------  219 (257)
Q Consensus       165 ~Ei~~ql~~-~~d~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigv~~~~~~~~~~----~~--------------  219 (257)
                      +||++|+++ .||+||+|+|+||+++|++.+|+++.      |.+++|+||+.+++++..    +.              
T Consensus       276 ~Ei~~ql~~~~~D~vvvpvG~GG~i~Gi~~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l~~~~~~G~~~~~~~~~~~t~a~  355 (486)
T 1e5x_A          276 IEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFAS  355 (486)
T ss_dssp             HHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC---------
T ss_pred             HHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHHhhhhccCCCCCEEEEEecCCCchHHHHHHcCCCccccCCCCCeeCc
Confidence            999999965 59999999999999999999998764      789999999998876531    10              


Q ss_pred             ------cccceeccccCCe----EEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 ------RGLFIFISYLFRS----FVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 ------~~~~~i~~~~~~~----~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                            |..++......++    ++.|+|+|+.++++ +++++++++|
T Consensus       356 gi~i~~p~~~~~~~~~~~~~~g~~~~Vsd~e~~~ai~-l~~~eGi~~e  402 (486)
T 1e5x_A          356 AIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMA-QADSTGMFIC  402 (486)
T ss_dssp             -------CCCHHHHHHHHHTTCEEEEECHHHHHHHHH-HHHHTTCCCC
T ss_pred             cccCCCCccHHHHHHHHhccCCeEEEECHHHHHHHHH-HHHHCCeEEC
Confidence                  1112222222333    99999999999999 7788999886

>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=8.1e-46  Score=338.29  Aligned_cols=240  Identities=18%  Similarity=0.202  Sum_probs=192.7

Q ss_pred             cccC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHH
Q 025113           13 ELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA   90 (257)
Q Consensus        13 ~~~~-~TPl~~~~~l~~~~-~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~   90 (257)
                      ..++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.|+    ...|+++|+||||+|+|++|+.
T Consensus        72 ~~ig~~TPL~~~~~Ls~~~gg~~i~lK~E~l~ptGSfK~R~a~~~i~~a~~~g~----~~vI~~~ssGNhg~avA~aaa~  147 (418)
T 1x1q_A           72 QFAGRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQALLARRMGK----RRVIAETGAGQHGVSVATVAAL  147 (418)
T ss_dssp             HTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSGGGBTTHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHHHH
T ss_pred             cccCCCCCcEEhHHhHhhcCCceEEEEEccCCcCccHHHHHHHHHHHHHHHcCC----CEEEEecCchHHHHHHHHHHHH
Confidence            4564 69999999998777 5899999999999999999999999998887775    2345568999999999999999


Q ss_pred             cCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEe-CCCCCCc----chHhhH
Q 025113           91 RGYNLIIVMPSTC---SMERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLL-RQFENPA----NPKIHY  160 (257)
Q Consensus        91 ~g~~~~i~vp~~~---~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~----~~~~g~  160 (257)
                      +|++|+||||...   +..|+.+++.+||+|+.++. ..+++++.+.+.+ ++++.++.+|+ +++.|+.    ++..||
T Consensus       148 ~Gi~~~I~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~~a~~~a~~~~~~~~~~~~~i~~~~~n~~p~~~~v~~gq  227 (418)
T 1x1q_A          148 FGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQ  227 (418)
T ss_dssp             HTCEEEEEEEHHHHHTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHTTTTEEECCCCSSSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCCcchhhhHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCccCCCCcHHHHHHHH
Confidence            9999999999852   23678899999999999984 3579999887754 56665455554 5544432    212599


Q ss_pred             hhHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCccc--------cCCCc-------
Q 025113          161 ETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESAVL--------NGGQR-------  220 (257)
Q Consensus       161 ~t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~~--------~~~~~-------  220 (257)
                      +|++.||++|+    +..||+||+|+|+||+++|++.++|++ .|+++||||||.++...        ..+.+       
T Consensus       228 ~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~~k~l~~p~~~vigVe~~g~~~~~~~~~~~l~~G~~~~~~g~~  307 (418)
T 1x1q_A          228 SVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGVLHGSY  307 (418)
T ss_dssp             THHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHHHHHTSCTTCCEEEEEEECCTTSSSCHHHHHHHHTCEEEETTEE
T ss_pred             HHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCCeEEEEecCCcccccHHHHHHHHcCCeeeecccc
Confidence            99999999998    345999999999999999999999987 89999999999997321        11111       


Q ss_pred             --------------------------cc--ceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          221 --------------------------GL--FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       221 --------------------------~~--~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                                                ++  +.+.+...++++.|+|+|+.+|+++|++++++++
T Consensus       308 ~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~  371 (418)
T 1x1q_A          308 MYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEALEGFKLLARLEGIIP  371 (418)
T ss_dssp             EEBCCC----------------CSBCCHHHHHHHHHTSEEEEEECHHHHHHHHHHHHHHHSCCB
T ss_pred             ccccccccccccCCceeeeccCCCCCCHHHHHHHhccCeEEEEECHHHHHHHHHHHHHhcCCcc
Confidence                                      00  1223345688999999999999999999999985

>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*

Probab=100.00  E-value=9.3e-45  Score=328.58  Aligned_cols=240  Identities=21%  Similarity=0.224  Sum_probs=193.1

Q ss_pred             hhcccCC-CCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEE-EeCCChHHHHHHHH
Q 025113           11 VTELIGN-TPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI-EVTSGNTGVGLAFI   87 (257)
Q Consensus        11 i~~~~~~-TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv-~~ssGN~~~alA~~   87 (257)
                      +...+++ |||+++++|++.+| .+||+|+|++|||||||+|++.+++..+.++|.     ..+| ++|+||||+|+|++
T Consensus        43 ~~~~ig~~TPL~~~~~l~~~~g~~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~-----~~vv~~~ssGN~g~a~A~a  117 (388)
T 1v8z_A           43 LKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGK-----TRLIAETGAGQHGVATAMA  117 (388)
T ss_dssp             HHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC-----CEEEEEESSSHHHHHHHHH
T ss_pred             HHHhcCCCCCceehHhhHhhcCCceEEEEeccCCCCCCHHHHHHHHHHHHHHHcCC-----CEEEEecCchHHHHHHHHH
Confidence            3447764 99999999987775 799999999999999999999999998888774     3455 58999999999999


Q ss_pred             HHHcCCcEEEEeCCC-CC--HHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEE-eCCCCCCcc----hH
Q 025113           88 AAARGYNLIIVMPST-CS--MERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYL-LRQFENPAN----PK  157 (257)
Q Consensus        88 a~~~g~~~~i~vp~~-~~--~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~----~~  157 (257)
                      |+.+|++|+||||.. .+  ..|+++++.+||+|+.++. ..+++++.+.+.+ ++++.++.+| ++++.|+.+    +.
T Consensus       118 a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~~~  197 (388)
T 1v8z_A          118 GALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVR  197 (388)
T ss_dssp             HHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHH
T ss_pred             HHHcCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCceEecCCccCCCCchhHHH
Confidence            999999999999974 23  4678999999999999985 4478998888754 5666555544 566656532    23


Q ss_pred             hhHhhHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc--------cCCCc-----
Q 025113          158 IHYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL--------NGGQR-----  220 (257)
Q Consensus       158 ~g~~t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~--------~~~~~-----  220 (257)
                      .||.|++.||++|+    +..+|+||+|+|+||+++|++.+++ ..|+++||+|||.++...        ..+.+     
T Consensus       198 ~~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~-~~~~~~vigve~~~~~~~~~~~~~~l~~g~~~~~~~  276 (388)
T 1v8z_A          198 DFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV-NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHG  276 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETT
T ss_pred             HHhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHh-hCCCceEEEEccCccccchhhhhHHHhcCCceeccc
Confidence            48999999999998    4469999999999999999998888 488999999999986321        00110     


Q ss_pred             ----------------------------c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          221 ----------------------------G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       221 ----------------------------~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                                                  +  .+.+.+...++++.|+|+|+.+++++|++++++++
T Consensus       277 ~~~~~~~~~~~~~~~~~tia~gl~~~~~g~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~  342 (388)
T 1v8z_A          277 MLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIP  342 (388)
T ss_dssp             EEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCCB
T ss_pred             cccccccccccccCCCceeeeccccCCCChhHHHHHhcCCcEEEEECHHHHHHHHHHHHHhcCCee
Confidence                                        0  01223445688999999999999999999999885

>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...

Probab=100.00  E-value=5e-45  Score=331.15  Aligned_cols=240  Identities=20%  Similarity=0.217  Sum_probs=194.2

Q ss_pred             hhcccC-CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEE-eCCChHHHHHHHHH
Q 025113           11 VTELIG-NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLAFIA   88 (257)
Q Consensus        11 i~~~~~-~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~~~alA~~a   88 (257)
                      +...++ +|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.++|.     .++|+ +|+||||+|+|++|
T Consensus        48 ~~~~ig~~TPL~~~~~l~~~~g~~i~lK~E~l~ptGSfK~R~a~~~~~~a~~~g~-----~~vi~e~ssGNhg~a~A~aa  122 (396)
T 1qop_B           48 LKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGK-----SEIIAETGAGQHGVASALAS  122 (396)
T ss_dssp             HHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC-----CEEEEEESSSHHHHHHHHHH
T ss_pred             HHHhCCCCCCcEEhhhhhhccCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHcCc-----CEEEEecCchHHHHHHHHHH
Confidence            345676 599999999998888999999999999999999999999999988875     34665 89999999999999


Q ss_pred             HHcCCcEEEEeCCC-CCH--HHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHH-HHhCCCeEEe-CCCCCCc----chHh
Q 025113           89 AARGYNLIIVMPST-CSM--ERRIVLRALGAEIILADS-ALRFEEILEKGEEI-LKKTPDGYLL-RQFENPA----NPKI  158 (257)
Q Consensus        89 ~~~g~~~~i~vp~~-~~~--~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~----~~~~  158 (257)
                      +.+|++|+||||.. .+.  .|+.+|+.+||+|+.++. +.+++++.+.+.+. +++.++.+|+ +++.|+.    ++..
T Consensus       123 ~~~G~~~~i~mp~~~~~~~~~~~~~~~~~GA~V~~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~v~~  202 (396)
T 1qop_B          123 ALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVRE  202 (396)
T ss_dssp             HHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHH
T ss_pred             HHCCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhccCCcEEEeCCcCCCCCchHHHHH
Confidence            99999999999985 433  467899999999999984 44789998888764 6665565554 4544442    2234


Q ss_pred             hHhhHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc--------ccCCCc------
Q 025113          159 HYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAV--------LNGGQR------  220 (257)
Q Consensus       159 g~~t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~--------~~~~~~------  220 (257)
                      ||+|++.||++|+    +..||+||+|+|+||+++|++.+++ ..|+++||||||.++..        +..+.+      
T Consensus       203 g~~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~~~~~-~~~~~~vigVe~~~~~~~~~~~~~~l~~g~~~~~~g~  281 (396)
T 1qop_B          203 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFI-NDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGM  281 (396)
T ss_dssp             TTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEE
T ss_pred             HHhHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHh-cCCCCEEEEEeCCCccccchhhHHHHHcCCeeeeccc
Confidence            8999999999998    5579999999999999999999998 48899999999998631        111111      


Q ss_pred             ---------------------------c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          221 ---------------------------G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       221 ---------------------------~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                                                 +  .+.+.+...++++.|+|+|+.++++.|++++++++
T Consensus       282 ~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~  346 (396)
T 1qop_B          282 KAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIP  346 (396)
T ss_dssp             EEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHHHHHSCCB
T ss_pred             hhhhcccccCCcCCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCcc
Confidence                                       0  01233446789999999999999999999999874

>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A

Probab=100.00  E-value=7e-44  Score=325.55  Aligned_cols=240  Identities=18%  Similarity=0.207  Sum_probs=186.6

Q ss_pred             hcccC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHH
Q 025113           12 TELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA   89 (257)
Q Consensus        12 ~~~~~-~TPl~~~~~l~~~~-~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~   89 (257)
                      ...++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.|+    ...|+++|+||||+|+|++|+
T Consensus        75 ~~~~g~~TPL~~~~~Ls~~~gg~~i~lK~E~lnptGSfK~R~a~~~~~~a~~~g~----~~vI~~~ssGNhG~A~A~aaa  150 (422)
T 2o2e_A           75 ANYAGRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGK----TRVIAETGAGQHGVATATACA  150 (422)
T ss_dssp             TTTSSCSCCEEECGGGGGGTTTCEEEEECGGGCCSSTTHHHHHHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHH
T ss_pred             HHhCCCCCCeEEChhhHhhcCCCeEEEEEcCCCCCCcHHHHHHHHHHHHHHHcCC----CeEEEecCccHHHHHHHHHHH
Confidence            44554 59999999999887 4799999999999999999999999999888775    244557999999999999999


Q ss_pred             HcCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEe-CCCCCC--c--chHhh
Q 025113           90 ARGYNLIIVMPSTC---SMERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLL-RQFENP--A--NPKIH  159 (257)
Q Consensus        90 ~~g~~~~i~vp~~~---~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~--~~~~g  159 (257)
                      ++|++|+||||...   ...|+.+|+.+||+|+.++. +.+++++.+.+.+ ++++.++.+|+ +++.|+  .  ++..|
T Consensus       151 ~~G~~~~I~mp~~~~~~q~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~~  230 (422)
T 2o2e_A          151 LLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDF  230 (422)
T ss_dssp             HHTCEEEEEEEHHHHHHSHHHHHHHHHTTCEEEEECSTTSCHHHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHHHHH
T ss_pred             HcCCcEEEEeCCCcchhhHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHHHHH
Confidence            99999999999853   24678899999999999985 4579999887744 56665565554 444432  2  22348


Q ss_pred             HhhHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCcc------
Q 025113          160 YETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQRG------  221 (257)
Q Consensus       160 ~~t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~------  221 (257)
                      |.|++.||++|+    +..||+||+|+|+||+++|++.+++. .|.++||||||.++.        ++..+.++      
T Consensus       231 q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~~-~p~v~vigVe~~g~~~~~~~~~~~l~~g~~~~~~g~~  309 (422)
T 2o2e_A          231 QRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLD-DPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSF  309 (422)
T ss_dssp             TTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGTT-CTTCEEEEEEECC------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHhc-CCCCeEEEEecCCCcccchhHHHHHHcCCceeccccc
Confidence            999999999997    44699999999999999999877754 788999999999862        12211110      


Q ss_pred             -----------------------------cceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          222 -----------------------------LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       222 -----------------------------~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                                                   .+.+.+...++++.|+|+|+.+|+++|++++++++
T Consensus       310 ~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~  373 (422)
T 2o2e_A          310 SYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIP  373 (422)
T ss_dssp             -------------------------------------CCEEEEECHHHHHHHHHHHHHHHCCCC
T ss_pred             hhhcccccccccCCceeecccCCCCCCHHHHHHHHhCCeeEEEECHHHHHHHHHHHHHHcCCcc
Confidence                                         01233445688999999999999999999999985

>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1

Probab=100.00  E-value=1e-38  Score=292.02  Aligned_cols=223  Identities=15%  Similarity=0.097  Sum_probs=180.2

Q ss_pred             CCCCceecccccCCCCceEEEEeCCC-CCCCChhhHHHHHHH---HHHHHcCCCCCCceEEEEeCCChHHHHHHH-HHHH
Q 025113           16 GNTPMVYLNNVVDGCVARIAAKLETM-EPCSSVKDRIAYSMI---KDAEDKGLITPGKTTLIEVTSGNTGVGLAF-IAAA   90 (257)
Q Consensus        16 ~~TPl~~~~~l~~~~~~~l~~K~E~~-~ptGS~K~R~a~~~~---~~a~~~g~~~~g~~~vv~~ssGN~~~alA~-~a~~   90 (257)
                      ++|||+++++       ++|+ +|++ |||||||||++.++.   .++ +++    +..+|+++|+||||.|+|+ +|+.
T Consensus        82 ~~TPL~~l~~-------~i~~-~E~~~~pTgSfKdr~a~~l~~~l~~a-~~~----~~~~Iv~atsGNtG~A~A~~~a~~  148 (428)
T 1vb3_A           82 FPAPVANVES-------DVGC-LELFHGPTLAFKDFGGRFMAQMLTHI-AGD----KPVTILTATSGDTGAAVAHAFYGL  148 (428)
T ss_dssp             SCCCEEEEET-------TEEE-EECCCSTTSBTHHHHHHHHHHHHHHH-TTT----CCEEEEEECSSSHHHHHHHHTTTC
T ss_pred             CCCCeEEecC-------CeEE-eeccCCCcccHHHHHHHHHHHHHHHH-Hhc----CCCEEEecCCchHHHHHHHHHhhh
Confidence            7899999974       6999 6666 799999999999885   444 233    2478999999999999994 9999


Q ss_pred             cCCcEEEEeCC-CCCHHHHHHHHHCCCEE--EEECCCCCHHHHHHHHHHHHHh-----CCCeEEeCCCCCCcchHhhHhh
Q 025113           91 RGYNLIIVMPS-TCSMERRIVLRALGAEI--ILADSALRFEEILEKGEEILKK-----TPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        91 ~g~~~~i~vp~-~~~~~~~~~l~~~Ga~v--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      +|++|+||||+ .+++.|+++|+.+||+|  +.++  ++++++.+.++++.++     ..++++++++ ||.+ +.||.|
T Consensus       149 ~G~~~~I~~P~~~~s~~k~~~m~~~GA~V~~v~v~--g~~d~~~~~~~~~~~d~~~~~~~~~~~~n~~-n~~~-~~gq~t  224 (428)
T 1vb3_A          149 PNVKVVILYPRGKISPLQEKLFCTLGGNIETVAID--GDFDACQALVKQAFDDEELKVALGLNSANSI-NISR-LLAQIC  224 (428)
T ss_dssp             TTEEEEEEEETTCSCHHHHHHHHSCCTTEEEEEEE--SCHHHHHHHHHHGGGCHHHHHHHTEECCSTT-SHHH-HHHTTH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhcCCeEEEEEeC--CCHHHHHHHHHHHHhchhhhhhcCeeeCCCC-CHHH-HHHHHH
Confidence            99999999999 59999999999999999  6666  4699998888887652     1256666664 6766 789999


Q ss_pred             HHHHHHhhhCC---CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CC-----------------
Q 025113          163 TGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GG-----------------  218 (257)
Q Consensus       163 ~~~Ei~~ql~~---~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~~-----------------  218 (257)
                      +++||++|+.+   .+|+||+|+|+||+++|++.+++...|.+++|+|++.+. .+.    .+                 
T Consensus       225 ~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~~~a~~~g~p~~kii~a~~~~~-~l~~~~~~G~~~~~~~~~tis~g~~i  303 (428)
T 1vb3_A          225 YYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVND-TVPRFLHDGQWSPKATQATLSNAMDV  303 (428)
T ss_dssp             HHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSCC-HHHHHHHHSCCCCCCCCCCSSGGGCC
T ss_pred             HHHHHHHHcccccCCCCEEEEeCCchHHHHHHHHHHHcCCCCCeEEeecCCCh-HHHHHHHcCCcccCCCCCcccchhcC
Confidence            99999999964   599999999999999999999988778889999998763 221    01                 


Q ss_pred             -Ccccce----ecccc-----CCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          219 -QRGLFI----FISYL-----FRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       219 -~~~~~~----i~~~~-----~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       .|+.++    +.+..     .++++.|+|+|+.++++.| +++++++|
T Consensus       304 ~~p~~~~~~~~l~~~~~~~~~~~~~~~Vsd~e~~~a~~~l-~~eGi~~~  351 (428)
T 1vb3_A          304 SQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMREL-KELGYTSE  351 (428)
T ss_dssp             SSCTTHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHHH-HHTTCCCC
T ss_pred             CCCccHHHHHHHHhcchhhhhCcEEEEECHHHHHHHHHHH-HHCCeEEC
Confidence             112221    12222     5789999999999999999 99999886

>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}

Probab=100.00  E-value=4.9e-37  Score=282.04  Aligned_cols=224  Identities=14%  Similarity=0.075  Sum_probs=176.7

Q ss_pred             CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHH---HHHHH-HcCCCCCCceEEEEeCCChHHHH-HHHHHHHc
Q 025113           17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSM---IKDAE-DKGLITPGKTTLIEVTSGNTGVG-LAFIAAAR   91 (257)
Q Consensus        17 ~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~---~~~a~-~~g~~~~g~~~vv~~ssGN~~~a-lA~~a~~~   91 (257)
                      -|||+++..       ++|+|.|++|||||||||++.++   +..+. ++|.    ..+|+++||||||.+ ++++|+..
T Consensus        93 ~~pl~~l~~-------~~~~kee~~~PTgSFKDRga~~~~~~l~~a~~~~g~----~~~Vv~ASSGNtG~aa~aa~a~~~  161 (468)
T 4f4f_A           93 VCPLVQTDA-------NEFVLELFHGPTLAFKDVAMQLLARMMDYVLAQRGE----RATIVGATSGDTGGAAIEAFGGRD  161 (468)
T ss_dssp             SSCEEEEET-------TEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHTTC----CEEEEEECSSHHHHHHHHHHTTCS
T ss_pred             CCceEEecC-------CeehHHhccCCcccHHHHHHHHHHHHHHHHHHhcCC----CcEEEEECCchHHHHHHHHHHhcc
Confidence            389998753       69999999999999999999999   77764 5554    357999999999955 56668889


Q ss_pred             CCcEEEEeCCC-CCHHHHHHHHHCCC-EE--EEECCCCCHHHHHHHHHHHHHhCC-----CeEEeCCCCCCcchHhhHhh
Q 025113           92 GYNLIIVMPST-CSMERRIVLRALGA-EI--ILADSALRFEEILEKGEEILKKTP-----DGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        92 g~~~~i~vp~~-~~~~~~~~l~~~Ga-~v--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |++++||||++ +++.|+.+|+.+|+ +|  +.++  ++|++|.+.+++++++.+     ++.++++ .||.. +.|+.|
T Consensus       162 Gi~~~I~~P~~~~s~~k~~~~~~~gganV~vv~v~--g~fdda~~~~k~~~~d~~~~~~~~~~~vns-in~~r-i~GQ~T  237 (468)
T 4f4f_A          162 NTDIFILFPNGRVSPVQQRQMTSSGFSNVHALSIE--GNFDDCQNLVKGMFNDLEFCDALSLSGVNS-INWAR-IMPQVV  237 (468)
T ss_dssp             SEEEEEEEETTCSCHHHHHHHHCSCCTTEEEEEEE--SCHHHHHHHHHHHHHCHHHHHHHTEEECCT-TSHHH-HGGGHH
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHhcCCCeEEEeecC--CCHHHHHHHHHHHHhccccccccceEeCCC-CCHHH-HHhHHH
Confidence            99999999998 99999999999974 65  5666  469999999998877531     4566665 46666 789999


Q ss_pred             HHHHHHhhhCCCCCE---EEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----C-----------------
Q 025113          163 TGPEIWQDSGGKVDA---FISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----G-----------------  218 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~---iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~-----------------  218 (257)
                      +++||++|++ .+|.   |+||+|+||+++|++.+.+.-.|..|+|+| +.+++++..    |                 
T Consensus       238 ~~~Ei~~ql~-~~d~~v~vvVPvG~GG~i~g~~~Ak~mGlPi~kli~a-~n~~~~l~~~l~~G~~~~~~~~~Tia~smdi  315 (468)
T 4f4f_A          238 YYFTAALSLG-APDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIA-TNDNDILSRTLESGAYEMRGVAQTTSPSMDI  315 (468)
T ss_dssp             HHHHHHHHTT-TTSSCEEEEEECSSSHHHHHHHHHHHHTCCEEEEEEE-ECSCCHHHHHHHHSEEECCCCCCCSCGGGCC
T ss_pred             HHHHHHHhcc-cCCCCeEEEEEeCCcHHHHHHHHHHHhCCCCCEEEEE-eCCchHHHHHHHcCCceecCCcceeCchhhc
Confidence            9999999995 7888   999999999999999884444467799999 877776532    0                 


Q ss_pred             -Cccccee-c----c---------------------------ccCC--eEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          219 -QRGLFIF-I----S---------------------------YLFR--SFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       219 -~~~~~~i-~----~---------------------------~~~~--~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                       .+++++. +    +                           ...+  ..+.|+|+|+.++++.+++++++++|
T Consensus       316 ~~~sN~erl~~~l~~~d~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~VsD~ei~~ai~~l~~~~g~~vE  389 (468)
T 4f4f_A          316 QISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSAGRSTVDETAATIESVLSKDGYLLD  389 (468)
T ss_dssp             SSCTTHHHHHHHHTTTCHHHHHHHHHHHHHHSEEECCHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHSCCCC
T ss_pred             CccchHHHHHHHHhccCHHHHHHHHHHHHhcCCeeccHHHHHHHhhcceEEEECHHHHHHHHHHHHHHCCEEEC
Confidence             1111110 0    0                           0011  27899999999999999999999986

>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1

Probab=100.00  E-value=3.4e-36  Score=279.56  Aligned_cols=191  Identities=15%  Similarity=0.052  Sum_probs=147.5

Q ss_pred             ccCCCCcee--cccccCCCCceEEEEeCCCCCCCChhhHHHHHHHH---HHH-HcCC-----CCCCceEEEEeCCChHHH
Q 025113           14 LIGNTPMVY--LNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIK---DAE-DKGL-----ITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus        14 ~~~~TPl~~--~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~---~a~-~~g~-----~~~g~~~vv~~ssGN~~~   82 (257)
                      ..+.|||++  ++++     .++|+|.|++|||||||||++.+++.   .+. ++|.     ++++ .+|+++||||||.
T Consensus        93 ~~g~TPLv~~~l~~l-----~~l~~K~e~~nPTgSFKDrga~~~~~~~~~a~~~~g~~~~~~~~~~-~~Iv~ATSGNtG~  166 (514)
T 1kl7_A           93 SDEVTPLVQNVTGDK-----ENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQ-ITVVGATSGDTGS  166 (514)
T ss_dssp             STTSSCEECCTTCSS-----SCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCC-EEEEEECSSSHHH
T ss_pred             CCCCCceeehhcccc-----cchhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhcCCccccccCCC-CEEEECCCCcHHH
Confidence            377899999  7665     47999999999999999999999844   443 3452     3343 6799999999999


Q ss_pred             HHHHHH--HHcCCcEEEEeCCC-CCHHHHHHHH---HCCCEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEeCCCCCCc
Q 025113           83 GLAFIA--AARGYNLIIVMPST-CSMERRIVLR---ALGAEIILADSALRFEEILEKGEEILKKTP--DGYLLRQFENPA  154 (257)
Q Consensus        83 alA~~a--~~~g~~~~i~vp~~-~~~~~~~~l~---~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  154 (257)
                      | |++|  +..|++++||||++ +++.++.+|.   .+|++++.++  ++|+++++.+++++++.+  +.+.+ ++.|+.
T Consensus       167 A-A~~a~a~~~Gi~~~I~~P~~~~S~~q~~qm~~~~g~~~~vv~v~--g~fdda~~~vk~l~~~~~~~~~~~~-~~~Ns~  242 (514)
T 1kl7_A          167 A-AIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVT--GTFDNCQDIVKAIFGDKEFNSKHNV-GAVNSI  242 (514)
T ss_dssp             H-HHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEES--SCHHHHHHHHHHHHHCSSCC--CCB-CCCCSC
T ss_pred             H-HHHHHHhhcCCeEEEEEcCCCCCHHHHHHHhhhcCCCEEEEEcC--CCHHHHHHHHHHHHhccccccccee-EeeCCC
Confidence            9 5555  88999999999997 8988777774   3444566666  569999999999988742  11111 344444


Q ss_pred             ch--HhhHhhHHHHHHhhh-C---CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 025113          155 NP--KIHYETTGPEIWQDS-G---GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL  215 (257)
Q Consensus       155 ~~--~~g~~t~~~Ei~~ql-~---~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~  215 (257)
                      ||  +.|+.+.++|+++|+ +   +.+|+||+|+|+||++.|++.+.+.-.|.+|+|+||+++ +++
T Consensus       243 N~~ri~gQ~tyy~e~~~ql~~~~~~~~d~~vvP~GngG~i~a~~~ak~~G~p~~rli~v~~~n-~~l  308 (514)
T 1kl7_A          243 NWARILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEN-DIL  308 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSC-CHH
T ss_pred             CHhHHhhHHHHHHHHHHHHhhhcCCCCcEEEEECCchHHHHHHHHHHHcCCCCCEEEEEeCCc-chH
Confidence            53  468999999999998 4   358999999999999999886555446778999999998 444

>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}

Probab=100.00  E-value=6.9e-35  Score=268.03  Aligned_cols=227  Identities=15%  Similarity=0.085  Sum_probs=177.0

Q ss_pred             CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHH---HHHHHH-cCCCCCCceEEEEeCCChHHHHHHHHHH-HcC
Q 025113           18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSM---IKDAED-KGLITPGKTTLIEVTSGNTGVGLAFIAA-ARG   92 (257)
Q Consensus        18 TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~---~~~a~~-~g~~~~g~~~vv~~ssGN~~~alA~~a~-~~g   92 (257)
                      |||+++..-   -+.++|+|.|++|||||||||++.++   +..+.+ +|.    ..+|+++||||||.|++++++ ..|
T Consensus       103 ~Pl~~l~~~---~~~~l~vkee~~~PTgSFKDRga~~~~~ll~~a~~~~g~----~~~Vv~ASSGNtG~Aaa~a~~~~~G  175 (487)
T 3v7n_A          103 TPLTTLGTE---NGAPVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAKHGE----TLNILGATSGDTGSAAEYAMRGKEG  175 (487)
T ss_dssp             SCEEEEEEE---TTEEEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHTTTC----CEEEEEECSSHHHHHHHHHHTTCTT
T ss_pred             ceeEEecCC---CCcceeHHhhccCCcCcHHHHHHHHHHHHHHHHHHhcCC----CcEEEEeCChHHHHHHHHHHHhccC
Confidence            799887520   01139999999999999999999998   778753 453    356999999999999777776 899


Q ss_pred             CcEEEEeCCC-CCHHHHHHHHHCCC---EEEEECCCCCHHHHHHHHHHHHH------hCCCeEEeCCCCCCcchHhhHhh
Q 025113           93 YNLIIVMPST-CSMERRIVLRALGA---EIILADSALRFEEILEKGEEILK------KTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        93 ~~~~i~vp~~-~~~~~~~~l~~~Ga---~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      ++++||||++ +++.|+++|+.+|+   +++.+++  +|++|.+.++++.+      +. +..+++++ ||.. +.|+.+
T Consensus       176 i~~~I~~P~~~~s~~k~~qm~~~Ga~nv~vv~v~G--~fDda~~~vk~~~~d~~~~~~~-~l~~vns~-Np~r-i~gQ~t  250 (487)
T 3v7n_A          176 VRVFMLSPHKKMSAFQTAQMYSLQDPNIFNLAVNG--VFDDCQDIVKAVSNDHAFKAQQ-KIGTVNSI-NWAR-VVAQVV  250 (487)
T ss_dssp             EEEEEEEETTCSCHHHHHHHHTCCCTTEEEEEEES--CHHHHHHHHHHHHTCHHHHHHT-TEECCSTT-CHHH-HHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCcEEEEEECC--CHHHHHHHHHHhhhchHHHhhc-CeeeeCCC-CHHH-HHhHHH
Confidence            9999999997 99999999999998   6777874  59999999988876      33 56677664 6666 789998


Q ss_pred             HHHHHHhhhC---CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----C-----------------
Q 025113          163 TGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----G-----------------  218 (257)
Q Consensus       163 ~~~Ei~~ql~---~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~-----------------  218 (257)
                      .++|+..|+.   +.+|+|+||+|+||+++|++.+.+.-.|.+|+|++|+++ +++..    |                 
T Consensus       251 yy~~~~~el~~~~~~~d~vvVP~GngG~i~g~~~A~~mGlp~~rli~a~~~n-~~l~~~~~~G~~~~~~~~~Ti~t~s~s  329 (487)
T 3v7n_A          251 YYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNEN-DVLDEFFRTGAYRVRSAQDTYHTSSPS  329 (487)
T ss_dssp             HHHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHHHHHHTTCCEEEEEEECTTC-HHHHHHHHHSEEEC-------------
T ss_pred             HHHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHHcCCCCceEEEEeCCC-cHHHHHHHcCCcccCCCCCccccCCch
Confidence            8888888873   359999999999999999987765545767999999997 44321    0                 


Q ss_pred             ----Ccccce-ecccc-----------------------------------CCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          219 ----QRGLFI-FISYL-----------------------------------FRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       219 ----~~~~~~-i~~~~-----------------------------------~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                          .|+++. ++..+                                   .-..+.|+|+|+.++++.+++++++++|
T Consensus       330 mdI~~psn~er~l~~l~~~d~~~~~~~m~~l~~~g~~~l~~~~~~~~~~~~~~~~~~VsDee~~~air~l~~~~G~l~d  408 (487)
T 3v7n_A          330 MDISKASNFERFVFDLLGRDPARVVQLFRDVEQKGGFDLAASGDFARVAEFGFVSGRSTHADRIATIRDVFERYRTMID  408 (487)
T ss_dssp             -----CHHHHHHHHHHTTTCHHHHHHHHHHHHHHSEEETTTTTCTHHHHHTTEEEECCCHHHHHHHHHHHHHHSCCCCC
T ss_pred             hccCCCccHHHHHHHHhCCCHHHHHHHHHHHHhcCCeecccchhHHHHHhhcceEEEECHHHHHHHHHHHHHHcCEEEC
Confidence                111111 10100                                   0135789999999999999999999987

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.61  E-value=0.97  Score=33.50  Aligned_cols=128  Identities=22%  Similarity=0.178  Sum_probs=82.6

Q ss_pred             EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCC
Q 025113           71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQF  150 (257)
Q Consensus        71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (257)
                      +++....|..|..+|...+..|.+++++-.   ++.+.+.++..|..++.-+..  ..                      
T Consensus         9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~---~~~~~~~~~~~g~~~i~gd~~--~~----------------------   61 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLASDIPLVVIET---SRTRVDELRERGVRAVLGNAA--NE----------------------   61 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEES---CHHHHHHHHHTTCEEEESCTT--SH----------------------
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHcCCCEEECCCC--CH----------------------
Confidence            466777899999999999889998887754   345666666677766443321  11                      


Q ss_pred             CCCcchHhhHhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccceecccc
Q 025113          151 ENPANPKIHYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYL  229 (257)
Q Consensus       151 ~~~~~~~~g~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~~i~~~~  229 (257)
                                     +++++.+ .+.|.+|++++.-....-+...++.++|+.++|+-....         ...+.++..
T Consensus        62 ---------------~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~---------~~~~~l~~~  117 (140)
T 3fwz_A           62 ---------------EIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYD---------DEVAYITER  117 (140)
T ss_dssp             ---------------HHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSH---------HHHHHHHHT
T ss_pred             ---------------HHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEECCH---------HHHHHHHHC
Confidence                           1122211 246899999987654444566778888889988754322         123445556


Q ss_pred             CCeEEEeChHHHHHHHHHHH
Q 025113          230 FRSFVLVDDGAVVHLHNYLL  249 (257)
Q Consensus       230 ~~~~v~v~d~e~~~a~~~l~  249 (257)
                      .-+.+..++.++...+....
T Consensus       118 G~d~vi~p~~~~a~~i~~~l  137 (140)
T 3fwz_A          118 GANQVVMGEREIARTMLELL  137 (140)
T ss_dssp             TCSEEEEHHHHHHHHHHHHH
T ss_pred             CCCEEECchHHHHHHHHHHh
Confidence            66667777777777666544

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=93.15  E-value=0.73  Score=39.38  Aligned_cols=61  Identities=28%  Similarity=0.277  Sum_probs=47.2

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      .+...+++|.+.+|.+.+|..|.+++..++..|.+++++..   ++.+++.++.+|++......
T Consensus       133 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~~  193 (325)
T 3jyn_A          133 RQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS---SPEKAAHAKALGAWETIDYS  193 (325)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEETT
T ss_pred             HHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEeCC
Confidence            34567888877777777899999999999999998776654   56678888889987665443

>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2

Probab=92.76  E-value=1.1  Score=35.62  Aligned_cols=76  Identities=21%  Similarity=0.317  Sum_probs=57.4

Q ss_pred             CCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEe-------CC--CCCHHHHHHHH
Q 025113           42 EPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVM-------PS--TCSMERRIVLR  112 (257)
Q Consensus        42 ~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~v-------p~--~~~~~~~~~l~  112 (257)
                      +|.--+=+..+...+.+|.+.|-    ...||.+++|.++..++-+.  .|+++++|.       |.  ..++..++.|+
T Consensus        22 ~~G~eNT~~tl~la~era~e~~I----k~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~   95 (201)
T 1vp8_A           22 KPGRENTEETLRLAVERAKELGI----KHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELR   95 (201)
T ss_dssp             SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHcCC----CEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHH
Confidence            34445667788888899998874    34455567799987766633  689999988       53  45899999999


Q ss_pred             HCCCEEEEECC
Q 025113          113 ALGAEIILADS  123 (257)
Q Consensus       113 ~~Ga~v~~~~~  123 (257)
                      ..|.+|+.-.-
T Consensus        96 ~~G~~V~t~tH  106 (201)
T 1vp8_A           96 KRGAKIVRQSH  106 (201)
T ss_dssp             HTTCEEEECCC
T ss_pred             hCCCEEEEEec
Confidence            99999998763

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.76  E-value=1.1  Score=38.30  Aligned_cols=60  Identities=22%  Similarity=0.329  Sum_probs=46.8

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      +.+.+++|.+.+|.+.+|..|.+++..++..|.+++++..   ++.+++.++.+|++.+....
T Consensus       142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~~~~  201 (334)
T 3qwb_A          142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS---TDEKLKIAKEYGAEYLINAS  201 (334)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETT
T ss_pred             HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCcEEEeCC
Confidence            3457888877677777899999999999999998766654   46688888899988665543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=92.50  E-value=1.4  Score=37.70  Aligned_cols=63  Identities=22%  Similarity=0.171  Sum_probs=47.6

Q ss_pred             HHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           57 KDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        57 ~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      .++.+...+++|.+.+|.+ .|..|.+.+..|+.+|.+++++..   ++.+++.++.+|++.+....
T Consensus       156 ~~~l~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~i~~~  218 (340)
T 3s2e_A          156 YKGLKVTDTRPGQWVVISG-IGGLGHVAVQYARAMGLRVAAVDI---DDAKLNLARRLGAEVAVNAR  218 (340)
T ss_dssp             HHHHHTTTCCTTSEEEEEC-CSTTHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHHHcCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCCEEEeCC
Confidence            3455666788887766655 588999999999999997666533   56788889999998766554

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=91.92  E-value=1.7  Score=37.12  Aligned_cols=60  Identities=23%  Similarity=0.284  Sum_probs=47.1

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HHCCCEEEEECC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEIILADS  123 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l-~~~Ga~v~~~~~  123 (257)
                      +...+++|.+.+|++.+|..|.+++..++..|.+++++..   ++.+++.+ +.+|++.+....
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~~~~~~  203 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG---GAEKCRFLVEELGFDGAIDYK  203 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCCSEEEETT
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCCEEEECC
Confidence            6677888888777788899999999999999997766543   45677777 889997655443

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=91.76  E-value=1.3  Score=38.29  Aligned_cols=60  Identities=20%  Similarity=0.153  Sum_probs=47.2

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      +...+++|.+.+|.+.+|..|.+++..++..|.+++++..   ++.+++.++.+|++......
T Consensus       161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~~~~  220 (353)
T 4dup_A          161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG---STGKCEACERLGAKRGINYR  220 (353)
T ss_dssp             TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEEEETT
T ss_pred             HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCCEEEeCC
Confidence            5677888877777778999999999999999998666543   56678888889998665543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=91.35  E-value=1.8  Score=37.29  Aligned_cols=54  Identities=30%  Similarity=0.340  Sum_probs=44.9

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI  118 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v  118 (257)
                      +...+++|.+.+|.+.+|..|.+++..|+..|.+++++    .++.+++.++.+|++.
T Consensus       144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~----~~~~~~~~~~~lGa~~  197 (343)
T 3gaz_A          144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT----ARGSDLEYVRDLGATP  197 (343)
T ss_dssp             TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE----ECHHHHHHHHHHTSEE
T ss_pred             HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE----eCHHHHHHHHHcCCCE
Confidence            66778888877777778999999999999999976665    3566788889999998

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=91.26  E-value=2  Score=37.26  Aligned_cols=57  Identities=26%  Similarity=0.299  Sum_probs=44.8

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA  121 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~  121 (257)
                      +...+++|.+.+|.+ +|..|.+.+..|+.+|.+++++.+   ++.+++.++.+|++.+..
T Consensus       183 ~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi~  239 (363)
T 3uog_A          183 EKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSS---SREKLDRAFALGADHGIN  239 (363)
T ss_dssp             TTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHTCSEEEE
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEec---CchhHHHHHHcCCCEEEc
Confidence            567788887766666 899999999999999998776543   567888888899976554

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=91.25  E-value=0.85  Score=39.85  Aligned_cols=53  Identities=19%  Similarity=0.066  Sum_probs=42.0

Q ss_pred             CCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        66 ~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      ++|.+.+|.+.+|..|.+.+..|+.+|.+++++.    ++.+++.++.+|++.+...
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~vi~~  215 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC----SPHNFDLAKSRGAEEVFDY  215 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEET
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe----CHHHHHHHHHcCCcEEEEC
Confidence            6777777777779999999999999999876654    3567888899999765544

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=90.99  E-value=1.9  Score=37.50  Aligned_cols=64  Identities=20%  Similarity=0.268  Sum_probs=47.3

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCH
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF  127 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~  127 (257)
                      +.+.+++|.+.+|.+.+|..|.+++..|+..|.+++++..   ++.+++.++.+|++.+....+.++
T Consensus       157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~~~~~~  220 (362)
T 2c0c_A          157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS---SDEKSAFLKSLGCDRPINYKTEPV  220 (362)
T ss_dssp             HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETTTSCH
T ss_pred             HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHHHHcCCcEEEecCChhH
Confidence            4466788877666666899999999999999998666554   466788888899986654433334

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=90.80  E-value=1.6  Score=37.07  Aligned_cols=62  Identities=26%  Similarity=0.344  Sum_probs=47.2

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      .+.+...+++|.+.+|.+.+|..|.+.+..|+.+|.+++++.    +..+++.++.+|++.+....
T Consensus       143 ~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~----~~~~~~~~~~lGa~~~i~~~  204 (321)
T 3tqh_A          143 QALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA----SKRNHAFLKALGAEQCINYH  204 (321)
T ss_dssp             HHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE----CHHHHHHHHHHTCSEEEETT
T ss_pred             HHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe----ccchHHHHHHcCCCEEEeCC
Confidence            444667888987766666799999999999999999876654    34567888999998655443

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=90.75  E-value=1.4  Score=38.03  Aligned_cols=59  Identities=25%  Similarity=0.417  Sum_probs=45.7

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +...+++|.+.+|.+.+|..|.+++..|+..|.+++++...   +.+++.++.+|++.+...
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~---~~~~~~~~~~ga~~v~~~  211 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNR---TAATEFVKSVGADIVLPL  211 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS---GGGHHHHHHHTCSEEEES
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEecC
Confidence            66778888887777778999999999999999987776653   345567777898766544

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=90.61  E-value=2.8  Score=35.85  Aligned_cols=68  Identities=19%  Similarity=0.158  Sum_probs=50.7

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHH
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE  128 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~  128 (257)
                      .+.....+.+|.+.+|. ..|.-|...+..|+.+|.+.++.+.  .++.|++.++.+||+......+.+..
T Consensus       151 ~~~~~~~~~~g~~VlV~-GaG~vG~~aiq~ak~~G~~~vi~~~--~~~~k~~~a~~lGa~~~i~~~~~~~~  218 (346)
T 4a2c_A          151 HAFHLAQGCENKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--ISSEKLALAKSFGAMQTFNSSEMSAP  218 (346)
T ss_dssp             HHHHHTTCCTTSEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEETTTSCHH
T ss_pred             HHHHHhccCCCCEEEEE-CCCCcchHHHHHHHHcCCcEEEEEe--chHHHHHHHHHcCCeEEEeCCCCCHH
Confidence            34556667788765555 5588899989999999999877764  35778899999999887766544443

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=90.25  E-value=2.9  Score=36.70  Aligned_cols=59  Identities=25%  Similarity=0.263  Sum_probs=43.5

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII  119 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~  119 (257)
                      .+.....+++|.+.+|.+ .|..|...+..|+.+|.+.++.+.  .++.+++.++.+|++++
T Consensus       176 ~al~~~~~~~g~~VlV~G-aG~vG~~aiqlAk~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~i  234 (398)
T 1kol_A          176 HGAVTAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEIA  234 (398)
T ss_dssp             HHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEEE
T ss_pred             HHHHHcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCCeEEEEc--CCHHHHHHHHHcCCcEE
Confidence            344456788887766655 699999999999999985444442  35778889999999843

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=90.09  E-value=1.9  Score=36.90  Aligned_cols=62  Identities=18%  Similarity=0.228  Sum_probs=46.2

Q ss_pred             HHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        59 a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      +.+...+++|.+.+|.+.+|..|.+++..|+..|.+++++....   .+++.++.+|++.+....
T Consensus       136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~---~~~~~~~~lga~~~~~~~  197 (340)
T 3gms_A          136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN---KHTEELLRLGAAYVIDTS  197 (340)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSS---TTHHHHHHHTCSEEEETT
T ss_pred             HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHhCCCcEEEeCC
Confidence            34667788888877777778999999999999999877776543   345666678988665443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.77  E-value=4.3  Score=36.15  Aligned_cols=96  Identities=17%  Similarity=0.284  Sum_probs=61.3

Q ss_pred             EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCC
Q 025113           71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQF  150 (257)
Q Consensus        71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (257)
                      +|+....|..|..+|-.....|++++++-   .++.+++.++..|..++.-+..  -                       
T Consensus         6 ~viIiG~Gr~G~~va~~L~~~g~~vvvId---~d~~~v~~~~~~g~~vi~GDat--~-----------------------   57 (413)
T 3l9w_A            6 RVIIAGFGRFGQITGRLLLSSGVKMVVLD---HDPDHIETLRKFGMKVFYGDAT--R-----------------------   57 (413)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEE---CCHHHHHHHHHTTCCCEESCTT--C-----------------------
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEE---CCHHHHHHHHhCCCeEEEcCCC--C-----------------------
Confidence            46777789999999999998999888863   3456677777777665554432  1                       


Q ss_pred             CCCcchHhhHhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEe
Q 025113          151 ENPANPKIHYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVE  208 (257)
Q Consensus       151 ~~~~~~~~g~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~  208 (257)
                                    .+++++.+ .+.|.||++++.-....-+....|.++|+.+||+-.
T Consensus        58 --------------~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           58 --------------MDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             --------------HHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             --------------HHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEE
Confidence                          11222221 245677777776555555566666777777766643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=89.44  E-value=4.7  Score=34.74  Aligned_cols=58  Identities=21%  Similarity=0.329  Sum_probs=45.2

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA  121 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~  121 (257)
                      +...+++|.+.+|++.+|..|.+++..++..|.+++++..   ++.+++.++.+|++...-
T Consensus       164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~d  221 (351)
T 1yb5_A          164 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVFN  221 (351)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEE
T ss_pred             HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC---ChhHHHHHHHcCCCEEEe
Confidence            3567888888778888899999999999999998666543   356777888899875543

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=89.36  E-value=3.3  Score=35.70  Aligned_cols=59  Identities=17%  Similarity=0.157  Sum_probs=45.4

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +...+++|...+|++.+|..|.+++..++..|.+++++..   ++.+++.++.+|++...-.
T Consensus       156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~~~~  214 (354)
T 2j8z_A          156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAG---SQKKLQMAEKLGAAAGFNY  214 (354)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHTCSEEEET
T ss_pred             HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEec
Confidence            4567888877777777899999999999999998766543   4567777788899765433

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=89.31  E-value=2.4  Score=36.49  Aligned_cols=60  Identities=18%  Similarity=0.097  Sum_probs=44.4

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRALGAEIILA  121 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~-~~~i~vp~~~~~~~~~~l~~~Ga~v~~~  121 (257)
                      ++.+...+++|.+.+|.+ .|..|.+.+..|+..|. +++++   ..++.+++.++.+|++.+..
T Consensus       157 ~al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~---~~~~~~~~~~~~lGa~~vi~  217 (352)
T 3fpc_A          157 HGAELANIKLGDTVCVIG-IGPVGLMSVAGANHLGAGRIFAV---GSRKHCCDIALEYGATDIIN  217 (352)
T ss_dssp             HHHHHTTCCTTCCEEEEC-CSHHHHHHHHHHHTTTCSSEEEE---CCCHHHHHHHHHHTCCEEEC
T ss_pred             HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE---CCCHHHHHHHHHhCCceEEc
Confidence            445667788887766665 69999999999999998 45553   23567888889999975543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=89.06  E-value=5  Score=34.06  Aligned_cols=57  Identities=21%  Similarity=0.320  Sum_probs=44.3

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      +...+++|.+.+|++.+|..|.+++..++..|.+++++..   ++.+++.++.+|++...
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~~~~  195 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAF  195 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence            5567788888788888899999999999999997766543   45667777888986544

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=88.99  E-value=2.7  Score=36.57  Aligned_cols=62  Identities=21%  Similarity=0.215  Sum_probs=45.0

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      .+.+...+++|.+.+|.+ .|..|.+....|+.+|.+.++.+.  .++.+++.++.+|++.+...
T Consensus       173 ~~l~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~  234 (370)
T 4ej6_A          173 HGVDLSGIKAGSTVAILG-GGVIGLLTVQLARLAGATTVILST--RQATKRRLAEEVGATATVDP  234 (370)
T ss_dssp             HHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEC--SCHHHHHHHHHHTCSEEECT
T ss_pred             HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCCEEECC
Confidence            344556678887766655 499999999999999995444443  35678888889999765543

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=88.82  E-value=2.9  Score=36.53  Aligned_cols=54  Identities=24%  Similarity=0.354  Sum_probs=41.2

Q ss_pred             CCceEEEEe-CCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           67 PGKTTLIEV-TSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        67 ~g~~~vv~~-ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      +|.+.+|.. .+|..|.+.+..|+.+|.+++++..   ++.+++.++.+|++.+....
T Consensus       170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~~~~  224 (379)
T 3iup_A          170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVR---KQEQADLLKAQGAVHVCNAA  224 (379)
T ss_dssp             TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEES---SHHHHHHHHHTTCSCEEETT
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHhCCCcEEEeCC
Confidence            344556653 8899999999999999998777653   57788899999997655443

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=88.80  E-value=4.8  Score=31.24  Aligned_cols=55  Identities=29%  Similarity=0.457  Sum_probs=39.8

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI  118 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v  118 (257)
                      +...+++|.+.+|++.+|..|.+++..++..|.+++++..   ++.+.+.++.+|++.
T Consensus        32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~~   86 (198)
T 1pqw_A           32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEY   86 (198)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSE
T ss_pred             HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence            3456788877667777899999999999999987666543   345566666677653

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=88.69  E-value=3.6  Score=35.21  Aligned_cols=60  Identities=22%  Similarity=0.210  Sum_probs=45.2

Q ss_pred             HHHHc-CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           58 DAEDK-GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        58 ~a~~~-g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      .+..+ ..+++|.+.+|...+|..|.+++..++..|.+++++..   ++.+++.++.+|++.+.
T Consensus       156 ~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~ga~~~~  216 (343)
T 2eih_A          156 QMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAG---SEDKLRRAKALGADETV  216 (343)
T ss_dssp             HHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred             HHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCCEEE
Confidence            34444 46788888777888899999999999999997766544   45677777888987543

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=88.57  E-value=5.1  Score=34.55  Aligned_cols=61  Identities=20%  Similarity=0.170  Sum_probs=44.8

Q ss_pred             HHHHc--CCCCCCceEEEEeCCChHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           58 DAEDK--GLITPGKTTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        58 ~a~~~--g~~~~g~~~vv~~ssGN~~~alA~~a~~~-g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      .+..+  ..+++|.+.+|.+. |..|.+++..|+.+ |.+++++.+   ++.+++.++.+|++.+.-.
T Consensus       175 ~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi~~  238 (359)
T 1h2b_A          175 RAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDV---KEEKLKLAERLGADHVVDA  238 (359)
T ss_dssp             HHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEES---SHHHHHHHHHTTCSEEEET
T ss_pred             HHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHhCCCEEEec
Confidence            34444  67788877666665 89999999999999 987555443   4678888899999765544

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=88.52  E-value=2.8  Score=36.22  Aligned_cols=60  Identities=27%  Similarity=0.349  Sum_probs=47.4

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEE
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIIL  120 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~  120 (257)
                      +.+.+++|.+.+|.+.+|..|.+....|+.+|.+.++++.... ...+++.++.+|++.+.
T Consensus       161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi  221 (357)
T 1zsy_A          161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI  221 (357)
T ss_dssp             HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEE
T ss_pred             HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEE
Confidence            4567888877667677799999999999999999888886543 35567788899997654

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=88.20  E-value=4.9  Score=34.42  Aligned_cols=62  Identities=27%  Similarity=0.258  Sum_probs=45.6

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~-g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      .+.++..+++|.+.+|+..+|..|.+++..++.. |.+++++..   ++.+++.++.+|++.....
T Consensus       161 ~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~~~~  223 (347)
T 1jvb_A          161 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV---REEAVEAAKRAGADYVINA  223 (347)
T ss_dssp             HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES---SHHHHHHHHHHTCSEEEET
T ss_pred             HHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHhCCCEEecC
Confidence            3344466788888777777779999999999999 998665543   4567777788898765443

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=88.09  E-value=3.8  Score=34.84  Aligned_cols=58  Identities=22%  Similarity=0.296  Sum_probs=44.1

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA  121 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~  121 (257)
                      +...+++|.+.+|+..+|..|.+++..++..|.+++++..   ++.+++.++.+|++...-
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~g~~~~~d  196 (333)
T 1wly_A          139 QTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVS---TEEKAETARKLGCHHTIN  196 (333)
T ss_dssp             TTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred             HhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEE
Confidence            3567888877777777899999999999999987666544   356677777789875543

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=88.09  E-value=8  Score=31.96  Aligned_cols=74  Identities=19%  Similarity=0.045  Sum_probs=49.0

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      |+..|||.+++--|+++|..-...|.++++.-.... -....+.++..|.+++.+..+- +.++..+..++..++.
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            347788999999999999999989988666432211 1234556777888888776542 3344455556665555

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=87.94  E-value=2.5  Score=36.30  Aligned_cols=52  Identities=17%  Similarity=0.279  Sum_probs=38.6

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      ...+|.+.+|..|.+++..|+.+|.+++++.+   ++.+++.++.+|++.+....
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~~  217 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVR---RDEQIALLKDIGAAHVLNEK  217 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---CGGGHHHHHHHTCSEEEETT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEECC
Confidence            35555668899999999999999998777654   33466777788997665543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=87.92  E-value=4.3  Score=34.38  Aligned_cols=56  Identities=21%  Similarity=0.201  Sum_probs=43.2

Q ss_pred             cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      ...+++|.+.+|+..+|..|.+++..++..|.+++++..   ++.+.+.++.+|++...
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~g~~~~~  190 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQVI  190 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence            567888877777777899999999999999987666543   35667777778886544

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=87.91  E-value=5.3  Score=34.20  Aligned_cols=60  Identities=20%  Similarity=0.292  Sum_probs=44.4

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      .+..+..+++|.+.+|+..+|..|.+++..++..|.+++++...   +.+.+.++.+|++...
T Consensus       160 ~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~---~~~~~~~~~~g~~~~~  219 (347)
T 2hcy_A          160 KALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGG---EGKEELFRSIGGEVFI  219 (347)
T ss_dssp             HHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS---TTHHHHHHHTTCCEEE
T ss_pred             HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCC---HHHHHHHHHcCCceEE
Confidence            44445567888887888888999999999999999987766543   2345667778987543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=87.73  E-value=4.5  Score=30.22  Aligned_cols=127  Identities=11%  Similarity=0.012  Sum_probs=72.6

Q ss_pred             EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCC
Q 025113           71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ  149 (257)
Q Consensus        71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~-~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (257)
                      .|+....|..|..++...+..|.+++++-+..   .+.+.++ ..|..++..+..                         
T Consensus        21 ~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~---~~~~~~~~~~g~~~~~~d~~-------------------------   72 (155)
T 2g1u_A           21 YIVIFGCGRLGSLIANLASSSGHSVVVVDKNE---YAFHRLNSEFSGFTVVGDAA-------------------------   72 (155)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCG---GGGGGSCTTCCSEEEESCTT-------------------------
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEECCH---HHHHHHHhcCCCcEEEecCC-------------------------
Confidence            45556679999999999998898877775432   2333333 345543322210                         


Q ss_pred             CCCCcchHhhHhhHHHHHHhh--hCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccceecc
Q 025113          150 FENPANPKIHYETTGPEIWQD--SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFIS  227 (257)
Q Consensus       150 ~~~~~~~~~g~~t~~~Ei~~q--l~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~~i~~  227 (257)
                           .         .+.+++  + ...|.||++++.-....-+....+...+..++++......         ..+.++
T Consensus        73 -----~---------~~~l~~~~~-~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~---------~~~~l~  128 (155)
T 2g1u_A           73 -----E---------FETLKECGM-EKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDPE---------KIKIFE  128 (155)
T ss_dssp             -----S---------HHHHHTTTG-GGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGG---------GHHHHH
T ss_pred             -----C---------HHHHHHcCc-ccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHH---------HHHHHH
Confidence                 0         001111  2 2479999999986665556666666677778777643221         123444


Q ss_pred             ccCCeEEEeChHHHHHHHHHHHh
Q 025113          228 YLFRSFVLVDDGAVVHLHNYLLL  250 (257)
Q Consensus       228 ~~~~~~v~v~d~e~~~a~~~l~~  250 (257)
                      ....+ +..+++.+...+..+.+
T Consensus       129 ~~G~~-vi~p~~~~a~~l~~~l~  150 (155)
T 2g1u_A          129 ENGIK-TICPAVLMIEKVKEFII  150 (155)
T ss_dssp             TTTCE-EECHHHHHHHHHHHHHH
T ss_pred             HCCCc-EEcHHHHHHHHHHHHHh
Confidence            45555 54555555555544443

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=87.41  E-value=3.6  Score=35.86  Aligned_cols=60  Identities=30%  Similarity=0.337  Sum_probs=45.3

Q ss_pred             HHHHcCC-CCCCceEEEEeCCChHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113           58 DAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAARG-YNLIIVMPSTCSMERRIVLRALGAEIILA  121 (257)
Q Consensus        58 ~a~~~g~-~~~g~~~vv~~ssGN~~~alA~~a~~~g-~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~  121 (257)
                      .+.+... +++|.+.+|.+ +|..|.+++..|+.+| .+++++.+   ++.+++.++.+|++.+..
T Consensus       185 ~al~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~~~~lGa~~vi~  246 (380)
T 1vj0_A          185 HAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAG---SPNRLKLAEEIGADLTLN  246 (380)
T ss_dssp             HHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEES---CHHHHHHHHHTTCSEEEE
T ss_pred             HHHHhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcC---CHHHHHHHHHcCCcEEEe
Confidence            3445556 78887766666 8999999999999999 47766554   467888888999975543

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=87.39  E-value=1.4  Score=39.69  Aligned_cols=57  Identities=33%  Similarity=0.362  Sum_probs=47.2

Q ss_pred             CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      ..+++|.+.+|.+.+|..|.+.+..|+..|.+++++..   ++.+++.++.+|++.+...
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~---~~~~~~~~~~lGa~~vi~~  280 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS---SPQKAEICRAMGAEAIIDR  280 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCCEEEET
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHhhCCcEEEec
Confidence            56788877677777799999999999999998888763   6788999999999876554

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=87.37  E-value=5.6  Score=34.08  Aligned_cols=59  Identities=32%  Similarity=0.315  Sum_probs=44.4

Q ss_pred             HcCCCC------CCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           61 DKGLIT------PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        61 ~~g~~~------~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +...++      +|.+.+|.+.+|..|.+++..|+.+|.+++++.   .++.+++.++.+|++.+...
T Consensus       138 ~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~vi~~  202 (346)
T 3fbg_A          138 DVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTA---SRNETIEWTKKMGADIVLNH  202 (346)
T ss_dssp             TTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEC---CSHHHHHHHHHHTCSEEECT
T ss_pred             HhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHhcCCcEEEEC
Confidence            455566      777767777899999999999999999766653   24678888888998765433

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=87.16  E-value=3.9  Score=33.93  Aligned_cols=74  Identities=5%  Similarity=-0.065  Sum_probs=53.9

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~  141 (257)
                      |...+||.+++--|+++|..-...|.+++++-.........+.+...|.++..+..+ .+.++..+..++..++.
T Consensus         7 gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            7 DKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF   81 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            357789999999999999999999999988887665666677777778777666543 23445555556655554

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=87.09  E-value=2.8  Score=36.19  Aligned_cols=58  Identities=22%  Similarity=0.219  Sum_probs=44.4

Q ss_pred             CCCCCC-ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEE
Q 025113           63 GLITPG-KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIIL  120 (257)
Q Consensus        63 g~~~~g-~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~  120 (257)
                      +.+++| .+.+|.+.+|..|.+++..|+.+|.++++++..... ..+.+.++.+|++.+.
T Consensus       162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi  221 (364)
T 1gu7_A          162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVI  221 (364)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEE
T ss_pred             hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEE
Confidence            568888 776666777999999999999999998887765443 3445667889997654

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=86.99  E-value=6.6  Score=33.68  Aligned_cols=57  Identities=28%  Similarity=0.417  Sum_probs=43.9

Q ss_pred             HcCCCCCC--ceEEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHH-CCCEEEE
Q 025113           61 DKGLITPG--KTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRA-LGAEIIL  120 (257)
Q Consensus        61 ~~g~~~~g--~~~vv~~ssGN~~~alA~~a~~~g~-~~~i~vp~~~~~~~~~~l~~-~Ga~v~~  120 (257)
                      +.+.+++|  .+.+|+..+|..|.+++..++..|. +++++..   ++.+++.++. +|++...
T Consensus       152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~---~~~~~~~~~~~~g~~~~~  212 (357)
T 2zb4_A          152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICG---THEKCILLTSELGFDAAI  212 (357)
T ss_dssp             HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTSCCSEEE
T ss_pred             HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeC---CHHHHHHHHHHcCCceEE
Confidence            55677888  7877888889999999999999998 7666544   3566777766 8987544

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=86.92  E-value=5  Score=34.41  Aligned_cols=58  Identities=33%  Similarity=0.421  Sum_probs=43.6

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~-~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      .+.+...+ +|.+.+|.+. |..|.+++..|+.+|. +++++..   ++.+++.++.+|++.+.
T Consensus       159 ~~l~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~---~~~~~~~~~~~Ga~~~~  217 (348)
T 2d8a_A          159 DTVLAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEP---SDFRRELAKKVGADYVI  217 (348)
T ss_dssp             HHHTTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECS---CHHHHHHHHHHTCSEEE
T ss_pred             HHHHhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHhCCCEEE
Confidence            34456667 8877666666 9999999999999998 7666543   46778888889987554

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=86.75  E-value=6.8  Score=33.87  Aligned_cols=60  Identities=20%  Similarity=0.279  Sum_probs=43.7

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      +...+++|.+.+|.+ +|.-|.+++..|+.+|.+.++.+.  .++.+++.++.+|++.+....
T Consensus       184 ~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~~  243 (371)
T 1f8f_A          184 NALKVTPASSFVTWG-AGAVGLSALLAAKVCGASIIIAVD--IVESRLELAKQLGATHVINSK  243 (371)
T ss_dssp             TTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCSEEEEEE--SCHHHHHHHHHHTCSEEEETT
T ss_pred             hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCCEEecCC
Confidence            566788887766665 699999999999999985333332  256788888999997665443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=86.55  E-value=9.2  Score=29.22  Aligned_cols=125  Identities=14%  Similarity=0.065  Sum_probs=73.9

Q ss_pred             EEEEeCCChHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCC
Q 025113           71 TLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ  149 (257)
Q Consensus        71 ~vv~~ssGN~~~alA~~a~~~-g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (257)
                      +++....|..|..+|...+.. |.+++++-.   ++.+.+.++..|.+++..+.. +                       
T Consensus        41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~---~~~~~~~~~~~g~~~~~gd~~-~-----------------------   93 (183)
T 3c85_A           41 QVLILGMGRIGTGAYDELRARYGKISLGIEI---REEAAQQHRSEGRNVISGDAT-D-----------------------   93 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHCSCEEEEES---CHHHHHHHHHTTCCEEECCTT-C-----------------------
T ss_pred             cEEEECCCHHHHHHHHHHHhccCCeEEEEEC---CHHHHHHHHHCCCCEEEcCCC-C-----------------------
Confidence            355557899999999998888 888877643   345566666667665443321 0                       


Q ss_pred             CCCCcchHhhHhhHHHHHHhhh--CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccceecc
Q 025113          150 FENPANPKIHYETTGPEIWQDS--GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFIS  227 (257)
Q Consensus       150 ~~~~~~~~~g~~t~~~Ei~~ql--~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~~i~~  227 (257)
                                     .+.+++.  -.+.|.||+++++-....-+...++..++..+++.....         +...+.+.
T Consensus        94 ---------------~~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~---------~~~~~~l~  149 (183)
T 3c85_A           94 ---------------PDFWERILDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEY---------PDQLEGLL  149 (183)
T ss_dssp             ---------------HHHHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESS---------HHHHHHHH
T ss_pred             ---------------HHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECC---------HHHHHHHH
Confidence                           0111111  135788999888766555566677888888888764221         11122334


Q ss_pred             ccCCeEEEeChHHHHHHHH
Q 025113          228 YLFRSFVLVDDGAVVHLHN  246 (257)
Q Consensus       228 ~~~~~~v~v~d~e~~~a~~  246 (257)
                      ....+.+..++.+....+.
T Consensus       150 ~~G~~~vi~p~~~~a~~l~  168 (183)
T 3c85_A          150 ESGVDAAFNIYSEAGSGFA  168 (183)
T ss_dssp             HHTCSEEEEHHHHHHHHHH
T ss_pred             HcCCCEEEchHHHHHHHHH
Confidence            4444555555555444443

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=86.45  E-value=1.3  Score=37.49  Aligned_cols=58  Identities=19%  Similarity=0.146  Sum_probs=45.3

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      ++.+...+++|.+.+|.+. |..|.+....|+.+|.+++++.    ++.+++.++.+|++.+.
T Consensus       133 ~al~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~  190 (315)
T 3goh_A          133 QAFEKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS----ASLSQALAAKRGVRHLY  190 (315)
T ss_dssp             HHHTTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC----SSCCHHHHHHHTEEEEE
T ss_pred             HHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE----ChhhHHHHHHcCCCEEE
Confidence            4557778889877666666 9999999999999999776665    33466777889997766

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=86.41  E-value=4.1  Score=35.38  Aligned_cols=55  Identities=25%  Similarity=0.261  Sum_probs=42.4

Q ss_pred             CCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        65 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      +++|.+.+|.+.+|.-|.+++..|+..|.+++++.    +..+++.++.+|++.+.-..
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~~~~  235 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC----SQDASELVRKLGADDVIDYK  235 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEETT
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe----ChHHHHHHHHcCCCEEEECC
Confidence            77887777777789999999999999998766654    23467778899998665443

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=86.18  E-value=2.6  Score=37.63  Aligned_cols=57  Identities=23%  Similarity=0.317  Sum_probs=46.6

Q ss_pred             cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113           62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA  121 (257)
Q Consensus        62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~  121 (257)
                      ...+++|.+.+|.+.+|..|.+++..|+..|.+++++..   ++.+++.++.+|++.+..
T Consensus       215 ~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~---~~~~~~~~~~lGa~~~i~  271 (447)
T 4a0s_A          215 GAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS---SAQKEAAVRALGCDLVIN  271 (447)
T ss_dssp             TTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCCCEEE
T ss_pred             ccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCCEEEe
Confidence            367888887777777899999999999999998887763   677888899999976543

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=86.11  E-value=4.4  Score=34.67  Aligned_cols=63  Identities=24%  Similarity=0.129  Sum_probs=44.7

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHH----HCCCEEEEEC
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLR----ALGAEIILAD  122 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~----~~Ga~v~~~~  122 (257)
                      ...|.+++|.+..+.+-.+|.+.++..+++++|.+++++.|+.-  ++..++.++    ..|+.+..+.
T Consensus       138 e~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~  206 (307)
T 3tpf_A          138 EWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGY  206 (307)
T ss_dssp             HTTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred             HHhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence            44566654445444555689999999999999999999999853  333334333    6788887776

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=85.82  E-value=7.1  Score=33.47  Aligned_cols=59  Identities=25%  Similarity=0.260  Sum_probs=43.0

Q ss_pred             HHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113           59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA  121 (257)
Q Consensus        59 a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~  121 (257)
                      +.+...+++|.+.+|.+ .|..|.+++..|+.+|.+++++.   .++.+++.++.+|++.+..
T Consensus       160 al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~~~~  218 (352)
T 1e3j_A          160 ACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTA---RSPRRLEVAKNCGADVTLV  218 (352)
T ss_dssp             HHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEE
T ss_pred             HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhCCCEEEc
Confidence            33455677887766665 58999999999999999844332   3567888889999975443

>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2

Probab=85.60  E-value=3.6  Score=32.77  Aligned_cols=75  Identities=21%  Similarity=0.320  Sum_probs=53.9

Q ss_pred             CCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEe-------CC--CCCHHHHHHHH
Q 025113           42 EPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVM-------PS--TCSMERRIVLR  112 (257)
Q Consensus        42 ~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~v-------p~--~~~~~~~~~l~  112 (257)
                      +|.--+=+..+...+.+|.+.|-    ...||.+++|.++..++-+.  -| ++++|.       |.  ..++..++.|+
T Consensus        30 ~~G~eNT~~tl~la~era~e~~I----k~iVVASssG~TA~k~~e~~--~~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~  102 (206)
T 1t57_A           30 EPGKENTERVLELVGERADQLGI----RNFVVASVSGETALRLSEMV--EG-NIVSVTHHAGFREKGQLELEDEARDALL  102 (206)
T ss_dssp             SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHTTC--CS-EEEEECCCTTSSSTTCCSSCHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHcCC----CEEEEEeCCCHHHHHHHHHc--cC-CEEEEeCcCCCCCCCCCcCCHHHHHHHH
Confidence            44445667788888899998874    24455567799887655532  45 777776       43  45899999999


Q ss_pred             HCCCEEEEECC
Q 025113          113 ALGAEIILADS  123 (257)
Q Consensus       113 ~~Ga~v~~~~~  123 (257)
                      ..|.+|+.-.-
T Consensus       103 ~~G~~V~t~tH  113 (206)
T 1t57_A          103 ERGVNVYAGSH  113 (206)
T ss_dssp             HHTCEEECCSC
T ss_pred             hCCCEEEEeec
Confidence            99999987663

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=85.57  E-value=4.2  Score=35.80  Aligned_cols=57  Identities=28%  Similarity=0.391  Sum_probs=42.4

Q ss_pred             CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +.+++|.+.+|.+ .|..|.+.+..|+.+|..-++.+.  .++.+++.++.+|++.+...
T Consensus       209 ~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~~~~lGa~~vi~~  265 (404)
T 3ip1_A          209 GGIRPGDNVVILG-GGPIGLAAVAILKHAGASKVILSE--PSEVRRNLAKELGADHVIDP  265 (404)
T ss_dssp             CCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEC--SCHHHHHHHHHHTCSEEECT
T ss_pred             cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCCEEEcC
Confidence            3678887766665 499999999999999994444443  35678888899999765544

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=85.55  E-value=4.4  Score=35.22  Aligned_cols=57  Identities=18%  Similarity=0.226  Sum_probs=41.3

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~-~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      .+...+++|.+.+|.+ .|..|.+.+..|+.+|. +++++ ..  ++.+++.++.+|++.+.
T Consensus       186 ~~~~~~~~g~~VlV~G-aG~vG~~a~q~a~~~Ga~~Vi~~-~~--~~~~~~~a~~lGa~~vi  243 (378)
T 3uko_A          186 WNTAKVEPGSNVAIFG-LGTVGLAVAEGAKTAGASRIIGI-DI--DSKKYETAKKFGVNEFV  243 (378)
T ss_dssp             HTTTCCCTTCCEEEEC-CSHHHHHHHHHHHHHTCSCEEEE-CS--CTTHHHHHHTTTCCEEE
T ss_pred             HhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEE-cC--CHHHHHHHHHcCCcEEE
Confidence            3567788887766665 49999999999999999 45544 22  33467788889997644

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=85.54  E-value=7.9  Score=33.84  Aligned_cols=58  Identities=26%  Similarity=0.198  Sum_probs=42.9

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRALGAEII  119 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~-~~~i~vp~~~~~~~~~~l~~~Ga~v~  119 (257)
                      .+.+...+++|.+.+|.+ .|..|.+.+..|+.+|. +++++.+   ++.+++.++.+|++++
T Consensus       176 ~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~i  234 (398)
T 2dph_A          176 HGCVSAGVKPGSHVYIAG-AGPVGRCAAAGARLLGAACVIVGDQ---NPERLKLLSDAGFETI  234 (398)
T ss_dssp             HHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEEES---CHHHHHHHHTTTCEEE
T ss_pred             HHHHHcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHcCCcEE
Confidence            344566788887766655 59999999999999998 5555443   5668888899999743

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=85.14  E-value=6.5  Score=33.56  Aligned_cols=53  Identities=26%  Similarity=0.292  Sum_probs=39.7

Q ss_pred             CCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        64 ~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      .+++|.+.+|... |..|.+++..++..|.+++++..   ++.+++.++.+|++.+.
T Consensus       161 ~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~  213 (339)
T 1rjw_A          161 GAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDI---GDEKLELAKELGADLVV  213 (339)
T ss_dssp             TCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECS---CHHHHHHHHHTTCSEEE
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEEe
Confidence            4677777666666 67999999999999986655433   46778888889997543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=85.08  E-value=7.5  Score=33.07  Aligned_cols=57  Identities=19%  Similarity=0.219  Sum_probs=43.6

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HCCCEEEE
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGAEIIL  120 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~-~~Ga~v~~  120 (257)
                      +...+++|.+.+|.+.+|..|.+++..++..|.+++++..   ++.+++.++ .+|++...
T Consensus       149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~~g~~~~~  206 (345)
T 2j3h_A          149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAG---SKEKVDLLKTKFGFDDAF  206 (345)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTSCCSEEE
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCceEE
Confidence            4567788877777777899999999999999987666543   456777777 68986544

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=84.79  E-value=4.5  Score=33.47  Aligned_cols=73  Identities=14%  Similarity=0.085  Sum_probs=51.7

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT  141 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~  141 (257)
                      ...+||.+++--|+++|..-+..|.+++++-.... -....+.++..|.+++.+..+ .+.++..+..++..++.
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            47789999999999999999999998777544321 233456678889988877653 24555556666666655

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=84.44  E-value=3.2  Score=35.67  Aligned_cols=59  Identities=14%  Similarity=0.103  Sum_probs=43.0

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      .+..+..+++|.+.+|.+ .|..|.+.+..|+.+|.+++++...   +.+++.++.+|++.+.
T Consensus       167 ~~l~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~~~~---~~~~~~~~~lGa~~v~  225 (348)
T 3two_A          167 SPLKFSKVTKGTKVGVAG-FGGLGSMAVKYAVAMGAEVSVFARN---EHKKQDALSMGVKHFY  225 (348)
T ss_dssp             HHHHHTTCCTTCEEEEES-CSHHHHHHHHHHHHTTCEEEEECSS---STTHHHHHHTTCSEEE
T ss_pred             HHHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHhcCCCeec
Confidence            344445678887766654 5999999999999999976665433   3456677889998766

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=84.00  E-value=3.2  Score=35.81  Aligned_cols=56  Identities=14%  Similarity=0.227  Sum_probs=40.2

Q ss_pred             CCCCCC------ceEEEEeCCChHHHHH-HHHH-HHcCCc-EEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113           63 GLITPG------KTTLIEVTSGNTGVGL-AFIA-AARGYN-LIIVMPSTCSMERRIVLRALGAEII  119 (257)
Q Consensus        63 g~~~~g------~~~vv~~ssGN~~~al-A~~a-~~~g~~-~~i~vp~~~~~~~~~~l~~~Ga~v~  119 (257)
                      ..+++|      .+.+|.+. |..|.+. +..| +.+|.+ ++++.+....+.+++.++.+|++.+
T Consensus       162 ~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v  226 (357)
T 2b5w_A          162 AYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV  226 (357)
T ss_dssp             HHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE
T ss_pred             cCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc
Confidence            345566      66666665 9999998 8889 899998 6666654433346777888999766

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=83.52  E-value=9.7  Score=30.88  Aligned_cols=72  Identities=14%  Similarity=0.039  Sum_probs=50.6

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK  140 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~  140 (257)
                      ...+|+..+|--|.++|......|.+++++-... ......+.++..|.++..+..+- +.++..+..++..++
T Consensus         8 k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            8 ATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            4678899999999999999999999988776643 23445666777888888776542 334444445555444

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=83.50  E-value=7.2  Score=33.19  Aligned_cols=65  Identities=18%  Similarity=0.206  Sum_probs=40.9

Q ss_pred             HHHcCCCCCCceEEEEeCCChHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCH
Q 025113           59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF  127 (257)
Q Consensus        59 a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~-g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~  127 (257)
                      +.+...++||.+.+|.+ .|..|...+..++.+ |.+++++.   .++.|++..+.+|++...-..+.++
T Consensus       155 ~l~~~~~~~g~~VlV~G-aG~~g~~a~~~a~~~~g~~Vi~~~---~~~~r~~~~~~~Ga~~~i~~~~~~~  220 (348)
T 4eez_A          155 AIKVSGVKPGDWQVIFG-AGGLGNLAIQYAKNVFGAKVIAVD---INQDKLNLAKKIGADVTINSGDVNP  220 (348)
T ss_dssp             HHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTSCCEEEEEE---SCHHHHHHHHHTTCSEEEEC-CCCH
T ss_pred             eecccCCCCCCEEEEEc-CCCccHHHHHHHHHhCCCEEEEEE---CcHHHhhhhhhcCCeEEEeCCCCCH
Confidence            34445567887755554 466665555556554 67766653   3567888899999987766544333

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=83.49  E-value=2.4  Score=36.04  Aligned_cols=58  Identities=28%  Similarity=0.390  Sum_probs=42.3

Q ss_pred             HcCCCCCCc-eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113           61 DKGLITPGK-TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA  121 (257)
Q Consensus        61 ~~g~~~~g~-~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~  121 (257)
                      ++..+++|. +.+|.+.+|..|.+++..|+.+|.+++++....   .+++.++.+|++.+.-
T Consensus       142 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~---~~~~~~~~lGa~~~i~  200 (328)
T 1xa0_A          142 EEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA---AEHDYLRVLGAKEVLA  200 (328)
T ss_dssp             HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT---TCHHHHHHTTCSEEEE
T ss_pred             hhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHcCCcEEEe
Confidence            445577775 656666679999999999999999877766543   3556667799975543

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=83.08  E-value=6.9  Score=32.29  Aligned_cols=56  Identities=13%  Similarity=0.039  Sum_probs=42.3

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA  124 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~  124 (257)
                      ...+|+..+|--|.++|......|.+++++-.........+.+...|.++..+..+
T Consensus        32 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D   87 (273)
T 3uf0_A           32 RTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVAD   87 (273)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEec
Confidence            46788999999999999999999999887774332344456667778888777653

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=82.42  E-value=3.7  Score=34.41  Aligned_cols=56  Identities=25%  Similarity=0.360  Sum_probs=42.3

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      +.+ +++|.+.+|.+.+|..|.+++..++..|.+++++...   +.+++.++.+|++.+.
T Consensus       120 ~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~---~~~~~~~~~~ga~~~~  175 (302)
T 1iz0_A          120 RAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR---PEKLALPLALGAEEAA  175 (302)
T ss_dssp             HTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS---GGGSHHHHHTTCSEEE
T ss_pred             Hhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhcCCCEEE
Confidence            356 8888777777777999999999999999977766553   3455566778987543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=82.28  E-value=8  Score=31.96  Aligned_cols=73  Identities=12%  Similarity=0.115  Sum_probs=50.6

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      ...+|+..+|--|.++|......|.+++++..... .....+.++..|.++..+..+- +.++..+.+++..++.
T Consensus        33 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46788999999999999999999999888776532 3445566777787776665432 3444555555555543

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=82.23  E-value=2.7  Score=35.73  Aligned_cols=57  Identities=23%  Similarity=0.397  Sum_probs=41.8

Q ss_pred             HcCCCCCCc-eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           61 DKGLITPGK-TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        61 ~~g~~~~g~-~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      ++..+++|. +.+|.+.+|..|.+++..|+..|.+++++....   .+++.++.+|++.+.
T Consensus       143 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~---~~~~~~~~lGa~~v~  200 (330)
T 1tt7_A          143 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR---EAADYLKQLGASEVI  200 (330)
T ss_dssp             HHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS---STHHHHHHHTCSEEE
T ss_pred             HhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHcCCcEEE
Confidence            345577775 666777779999999999999999877766543   245666778987543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=82.21  E-value=19  Score=29.43  Aligned_cols=72  Identities=15%  Similarity=0.165  Sum_probs=47.9

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK  140 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~  140 (257)
                      .+.+|+..+|--|.++|......|.+++++..... .....+.++..|.++..+..+- +.++..+..++..++
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   78 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDT   78 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46788999999999999998899999877654422 1233455667788887766432 344444445555444

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=82.21  E-value=10  Score=32.31  Aligned_cols=55  Identities=25%  Similarity=0.282  Sum_probs=40.7

Q ss_pred             CCCCCceEEEEeCCChHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           64 LITPGKTTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        64 ~~~~g~~~vv~~ssGN~~~alA~~a~~~-g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      .+++|.+.+|.+ .|..|.+....|+.+ |.+++++.   .++.+++.++.+|++.+...
T Consensus       168 ~~~~g~~vlv~G-aG~vG~~a~qla~~~g~~~Vi~~~---~~~~~~~~~~~lGa~~~i~~  223 (345)
T 3jv7_A          168 LLGPGSTAVVIG-VGGLGHVGIQILRAVSAARVIAVD---LDDDRLALAREVGADAAVKS  223 (345)
T ss_dssp             GCCTTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEE---SCHHHHHHHHHTTCSEEEEC
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEc---CCHHHHHHHHHcCCCEEEcC
Confidence            567777756655 499999999999988 66665543   35678888999999765544

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=81.74  E-value=17  Score=28.89  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=25.5

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS  101 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~  101 (257)
                      ...+|+..+|--|.++|..-...|.+++++...
T Consensus        15 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~   47 (247)
T 3i1j_A           15 RVILVTGAARGIGAAAARAYAAHGASVVLLGRT   47 (247)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEecC
Confidence            467888889999999988888788776665443

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=81.73  E-value=10  Score=30.69  Aligned_cols=71  Identities=17%  Similarity=0.171  Sum_probs=47.8

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK  140 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~  140 (257)
                      .+.+|+..+|.-|.++|......|.+++++..... ....+.++..|.++..+..+- +.++..+..++..++
T Consensus         5 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   76 (255)
T 2q2v_A            5 KTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP-APALAEIARHGVKAVHHPADLSDVAQIEALFALAERE   76 (255)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            46788999999999999998889998777654433 445566666788887776432 233334444444444

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=81.46  E-value=6.1  Score=34.11  Aligned_cols=57  Identities=12%  Similarity=0.163  Sum_probs=43.3

Q ss_pred             cCCCC--C-------CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113           62 KGLIT--P-------GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII  119 (257)
Q Consensus        62 ~g~~~--~-------g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~  119 (257)
                      ...++  +       |.+.+|.+. |..|.+++..++..|.+++++........+.+.++.+|++.+
T Consensus       166 ~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v  231 (366)
T 2cdc_A          166 QKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY  231 (366)
T ss_dssp             GGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE
T ss_pred             ccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee
Confidence            55667  7       777667776 999999999999999977776654323367778888999876

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=80.76  E-value=9.6  Score=30.89  Aligned_cols=73  Identities=12%  Similarity=-0.023  Sum_probs=47.1

Q ss_pred             ceEEEEeCC--ChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113           69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT  141 (257)
Q Consensus        69 ~~~vv~~ss--GN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~  141 (257)
                      .+.+|+..+  |.-|.++|......|.+++++.........++.+...+.++..+..+ .+.++..+..++..++.
T Consensus        15 k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   90 (271)
T 3ek2_A           15 KRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHW   90 (271)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            466788866  88999999999999999888776644455555553333334333322 23455555666666665

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=80.64  E-value=11  Score=30.82  Aligned_cols=73  Identities=15%  Similarity=0.155  Sum_probs=49.8

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      .+.+|+..+|--|.++|..-...|.+++++-.... .....+.++..|.++..+..+- +.++..+..++..++.
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A           12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46788999999999999999999999877655321 1223455667788887776432 3444555566666654

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=80.63  E-value=10  Score=30.52  Aligned_cols=74  Identities=8%  Similarity=0.128  Sum_probs=51.2

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC-CC-CHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhCC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS-TC-SMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKTP  142 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~-~~-~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~~  142 (257)
                      .+.+|+..+|--|.++|..-...|.++++.... .. .......++..|.++..+..+ .+.++..+..++..++.+
T Consensus        14 k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   90 (256)
T 3ezl_A           14 RIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEVG   90 (256)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            466888899999999999988899998877733 22 344566677788877766643 234555556666666653

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=80.59  E-value=10  Score=30.46  Aligned_cols=72  Identities=15%  Similarity=0.123  Sum_probs=48.4

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK  140 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~  140 (257)
                      .+.+|+..+|.-|.++|..-...|.+++++-.... .....+.++..|.++..+..+- +.++..+..++..++
T Consensus        10 k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T 3qiv_A           10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE   83 (253)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788999999999999999999999777655322 2233455667788888776542 334444445555444

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=80.54  E-value=9.5  Score=32.99  Aligned_cols=57  Identities=25%  Similarity=0.237  Sum_probs=41.0

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~-~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      .+...+++|.+.+|.+ .|..|.+.+..|+.+|.+ ++++..   ++.+++.++.+|++.+.
T Consensus       188 ~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~vi  245 (376)
T 1e3i_A          188 INTAKVTPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDI---NGEKFPKAKALGATDCL  245 (376)
T ss_dssp             HTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECS---CGGGHHHHHHTTCSEEE
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHhCCcEEE
Confidence            3556788887766665 699999999999999984 444332   34567777889996543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	257
d1z7wa1	320	c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C	2e-56
d1jbqa_	355	c.79.1.1 (A:) Cystathionine beta-synthase {Human (	6e-49
d1y7la1	310	c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C	8e-47
d1o58a_	293	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	6e-46
d1ve1a1	302	c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C	1e-44
d1fcja_	302	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	8e-42
d2bhsa1	292	c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C	1e-38
d1wkva1	382	c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C	7e-30
d1tdja1	331	c.79.1.1 (A:5-335) Threonine deaminase {Escherichi	1e-29
d1v71a1	318	c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S	2e-25
d1tyza_	338	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	1e-21
d1ve5a1	310	c.79.1.1 (A:2-311) Threonine deaminase {Thermus th	8e-21
d1e5xa_	477	c.79.1.1 (A:) Threonine synthase {Mouse-ear cress	2e-19
d1f2da_	341	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	9e-18
d1j0aa_	325	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	4e-17
d1p5ja_	319	c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa	2e-16
d1v8za1	386	c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun	6e-16
d1v7ca_	351	c.79.1.1 (A:) Threonine synthase {Thermus thermoph	3e-15
d1qopb_	390	c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S	2e-12

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  181 bits (460), Expect = 2e-56
 Identities = 150/215 (69%), Positives = 181/215 (84%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI 
Sbjct: 3   IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A  
Sbjct: 63  PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122

Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
            +  + K EEIL KTP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+SGIGTGG
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182

Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           T+TGAG++LKE N ++K+YGVEP ESA+L+GG+ G
Sbjct: 183 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 217

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (412), Expect = 6e-49
 Identities = 96/231 (41%), Positives = 131/231 (56%), Gaps = 6/231 (2%)

Query: 3   DNNAIKRDVTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
            +  I  D+ + IG+TPMV +N +    G    + AK E      SVKDRI+  MI+DAE
Sbjct: 30  KSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAE 89

Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
             G + PG T +IE TSGNTG+GLA  AA RGY  IIVMP   S E+  VLRALGAEI+ 
Sbjct: 90  RDGTLKPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVR 148

Query: 121 ADSALRF---EEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDA 177
             +  RF   E  +     +  + P+ ++L Q+ N +NP  HY+TT  EI Q   GK+D 
Sbjct: 149 TPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDM 208

Query: 178 FISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISY 228
            ++ +GTGGT+TG  R LKE  P  ++ GV+P  S +    +       +Y
Sbjct: 209 LVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTY 259

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

 Score =  156 bits (394), Expect = 8e-47
 Identities = 95/218 (43%), Positives = 133/218 (61%), Gaps = 5/218 (2%)

Query: 6   AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
           AI  D +  IGNTP+V L +        +  K+E   P  SVK RI  +M+  AE  G +
Sbjct: 1   AIYADNSYSIGNTPLVRLKHFGHNG--NVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 58

Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
           T GK   ++ TSGNTG+ LA++AAARGY + + MP T S+ER+ +L  LG  ++L + A 
Sbjct: 59  TKGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 117

Query: 126 RFEEILEKGEEILKKT-PDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGT 184
             +  + K EEI+        +L+QFENPANP+IH ETTGPEIW+D+ GKVD  ++G+GT
Sbjct: 118 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 177

Query: 185 GGTVTGAGRFLKEN-NPDIKVYGVEPSESAVLNGGQRG 221
           GG++TG  R +K +    I    VEP ES V++    G
Sbjct: 178 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAG 215

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

 Score =  153 bits (387), Expect = 6e-46
 Identities = 98/213 (46%), Positives = 137/213 (64%), Gaps = 9/213 (4%)

Query: 10  DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK 69
            +  LIG+TP+V L+++     +RI  KLE   P  SVKDR A  MI DAE +GL+  G 
Sbjct: 3   MMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG- 57

Query: 70  TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE 129
             ++E TSGN G+ +A I A RG+ +I+ MP T S+ERR VL+ LGAE++L    L  + 
Sbjct: 58  --IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKG 115

Query: 130 ILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT 189
            +EK  EI ++T   ++L QFENP N   H  TTGPEI +    ++DAF++G+GTGGT++
Sbjct: 116 AVEKALEISRETG-AHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTIS 174

Query: 190 GAGRFLKE-NNPDIKVYGVEPSESAVLNGGQRG 221
           G GR LK      +K+  VEP++S VL+GGQ G
Sbjct: 175 GVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPG 207

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

 Score =  150 bits (379), Expect = 1e-44
 Identities = 104/212 (49%), Positives = 143/212 (67%), Gaps = 2/212 (0%)

Query: 11  VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK- 69
           V   IG TP+V L  VV+  +A +  KLE + P  S+KDR A+ MIKDAE++G++ PG  
Sbjct: 3   VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62

Query: 70  TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE 129
             ++E TSGNTG+GLA IAA+RGY LI+ MP+  S ER+ VL+A GAE++L D   R   
Sbjct: 63  QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122

Query: 130 ILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT 189
             E+   + ++        QF+NPAN + HYETTGPE+++   G++DAF+ G GTGGT+T
Sbjct: 123 AREEALRLKEELGAFM-PDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181

Query: 190 GAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           G GR+LKE  P +KV  VEP+ S VL+GG+ G
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMG 213

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

 Score =  143 bits (360), Expect = 8e-42
 Identities = 101/211 (47%), Positives = 141/211 (66%), Gaps = 7/211 (3%)

Query: 7   IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
           I  D +  IG+TP+V LN + +    RI AK+E+  P  SVK RI  +MI DAE +G++ 
Sbjct: 3   IYEDNSLTIGHTPLVRLNRIGN---GRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59

Query: 67  PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
           PG    +E T+GNTG+ LA++AAARGY L + MP T S+ERR +L+ALGA ++L + A  
Sbjct: 60  PGVEL-VEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118

Query: 127 FEEILEKGEEILKKT-PDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTG 185
            +  ++K EEI+        LL+QF NPANP+IH +TTGPEIW+D+ G+VD FISG+GTG
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178

Query: 186 GTVTGAGRFLKENNPD--IKVYGVEPSESAV 214
           GT+TG  R++K       +    VEP++S V
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPV 209

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

 Score =  134 bits (337), Expect = 1e-38
 Identities = 93/210 (44%), Positives = 127/210 (60%), Gaps = 2/210 (0%)

Query: 11  VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
           + + IGNTP+V L  +     + +  KLE   P  SVKDR A SMI +AE +G I PG  
Sbjct: 3   LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 62

Query: 71  TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEI 130
             IE TSGNTG+ LA IAA +GY + ++MP   S ERR  +RA GAE+IL       E  
Sbjct: 63  L-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 121

Query: 131 LEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTG 190
            +   E+     +G LL QF NP NP  HY TTGPEIWQ +GG++  F+S +GT GT+TG
Sbjct: 122 RDLALEM-ANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 180

Query: 191 AGRFLKENNPDIKVYGVEPSESAVLNGGQR 220
             RF++E +  + + G++P E + + G +R
Sbjct: 181 VSRFMREQSKPVTIVGLQPEEGSSIPGIRR 210

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score =  113 bits (283), Expect = 7e-30
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 14/234 (5%)

Query: 13  ELIGN---TPMVYLNNVV-DGCVARIAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITP 67
           +       TP+V     + +G   R+  KLE   P S SVKDR A  +I     +  +  
Sbjct: 88  DFFERGKPTPLVRSRLQLPNGV--RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEK 143

Query: 68  GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
           G + + + TS N GV L+ +A   GY   + +P       +++ R LGA++I+   A   
Sbjct: 144 G-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPST 202

Query: 128 EEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ--DSGGKVDAFISGIGTG 185
             +L +  +  K     ++ + + +         T      Q    G  +      +GT 
Sbjct: 203 VHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 262

Query: 186 GTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG--LFIFISYLFRSFVLVD 237
           G ++ A  +L+  +P I+   V+P++   + G +R     ++I+ L  S+ L +
Sbjct: 263 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINMLDISYTLAE 316

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (278), Expect = 1e-29
 Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 9/204 (4%)

Query: 11  VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
           V E    TP+  +  +       I  K E  +P  S K R AY+M+    ++        
Sbjct: 21  VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQ----KAH 76

Query: 71  TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEI 130
            +I  ++GN   G+AF +A  G   +IVMP+  +  +   +R  G E++L        + 
Sbjct: 77  GVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHG---ANFDE 133

Query: 131 LEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTG 190
            +     L +      +  F++P    I  + T           +D     +G GG   G
Sbjct: 134 AKAKAIELSQQQGFTWVPPFDHP--MVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAG 191

Query: 191 AGRFLKENNPDIKVYGVEPSESAV 214
               +K+  P IKV  VE  +SA 
Sbjct: 192 VAVLIKQLMPQIKVIAVEAEDSAC 215

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  100 bits (249), Expect = 2e-25
 Identities = 40/205 (19%), Positives = 85/205 (41%), Gaps = 9/205 (4%)

Query: 2   EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAED 61
           +D  +    + +    TP++  + V    VA +  K E  +   + K R A + +    +
Sbjct: 6   DDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNE 65

Query: 62  KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121
                  K  ++  +SGN    +A  A   G    I+MP      +    +  G ++I+ 
Sbjct: 66  A----QRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMY 121

Query: 122 DSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISG 181
           D     ++  +  +EI ++  +G  +    +  +      T   E++++  G +DA    
Sbjct: 122 DR--YKDDREKMAKEISER--EGLTIIPPYDHPHVLAGQGTAAKELFEE-VGPLDALFVC 176

Query: 182 IGTGGTVTGAGRFLKENNPDIKVYG 206
           +G GG ++G+    +   P+ +VYG
Sbjct: 177 LGGGGLLSGSALAARHFAPNCEVYG 201

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

 Score = 90.1 bits (222), Expect = 1e-21
 Identities = 38/227 (16%), Positives = 63/227 (27%), Gaps = 23/227 (10%)

Query: 11  VTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSV---KDRIAYSMIKDAEDKGLI 65
                G TP+  L  +    G    + AK E      +    K R    +I +A  +G  
Sbjct: 9   YPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCD 68

Query: 66  TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL----- 120
           T      I     N    +A +AA  G   ++V  +  +    +  R    ++       
Sbjct: 69  TLV---SIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGAD 125

Query: 121 -----ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW-----QD 170
                    + F    E   E ++               +P       G          +
Sbjct: 126 VRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAE 185

Query: 171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG 217
            G K D  +    TG T  G       +    +V GV+ S       
Sbjct: 186 LGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTR 232

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

 Score = 87.4 bits (215), Expect = 8e-21
 Identities = 51/215 (23%), Positives = 85/215 (39%), Gaps = 12/215 (5%)

Query: 1   MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
           ++D  A  R +      TP++    +      R+  K E ++   S K R A S     E
Sbjct: 3   LQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE 62

Query: 61  DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
                      L+ V+SGN   G+A+ A   G   ++VMP   S  ++   RA GAE++ 
Sbjct: 63  -------NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVD 115

Query: 121 ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ--DSGGKVDAF 178
                   +  E+    L++     L+  F++P             + Q    G    A 
Sbjct: 116 RG---VTAKNREEVARALQEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAV 172

Query: 179 ISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213
           ++ +G GG + G    +K  +P   V GVEP  + 
Sbjct: 173 LAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAAD 207

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 85.1 bits (209), Expect = 2e-19
 Identities = 25/193 (12%), Positives = 57/193 (29%), Gaps = 5/193 (2%)

Query: 11  VTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPG 68
           V+   GN+ + +          +  +  K   +    S KD     ++        +   
Sbjct: 115 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRP 174

Query: 69  KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE 128
              +   ++G+T   L+   A+ G   I+ +P+   +    +++ +     +      F+
Sbjct: 175 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANK-ISMAQLVQPIANGAFVLSIDTDFD 233

Query: 129 EILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV 188
             ++   EI         L    N    +         + Q      D  I   G  G +
Sbjct: 234 GCMKLIREI--TAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNI 291

Query: 189 TGAGRFLKENNPD 201
               +  K     
Sbjct: 292 YAFYKGFKMCQEL 304

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

 Score = 79.3 bits (194), Expect = 9e-18
 Identities = 32/234 (13%), Positives = 60/234 (25%), Gaps = 30/234 (12%)

Query: 11  VTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSV---KDRIAYSMIKDAEDKGLI 65
                G +P+  LN +    G    + AK E      +    K R    ++ D  +    
Sbjct: 9   YPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGD-- 66

Query: 66  TPGKTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL--- 120
               T L+ +     N    +A +AA  G   +++      +             I    
Sbjct: 67  ---YTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSR 123

Query: 121 ------------ADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHY---ETTGP 165
                        D  +R        E          +           + +        
Sbjct: 124 IMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVI 183

Query: 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQ 219
               + G K D  +    TG T  G    + +      V  ++ S ++     Q
Sbjct: 184 NQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ 237

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 77.0 bits (188), Expect = 4e-17
 Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 10/221 (4%)

Query: 5   NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETM--EPCSSVKDRIAYSMIKDAEDK 62
               R V  +   TP+ YL N+     A +  K + +        K R    ++ DA  K
Sbjct: 10  AKFPR-VELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSK 68

Query: 63  GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
           G         +     N        A   G + I+V+     ++   +L  +        
Sbjct: 69  GADVVI---TVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVY 125

Query: 123 SALRFEEILEKGEEI----LKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAF 178
            A    E+++  EEI     ++    Y++          + Y     EI   S  K D+ 
Sbjct: 126 DAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSI 185

Query: 179 ISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQ 219
           +   G+GGT+ G    L   N DI+  G+       +   +
Sbjct: 186 VVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSK 226

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 2e-16
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 7/192 (3%)

Query: 14  LIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
           L   TP+     +       +  K+++ +P  S K R      K    +     G    +
Sbjct: 4   LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQ-----GCAHFV 58

Query: 74  EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEK 133
             ++GN G+  A+ A   G    IV+P T        L+  GA           +E  E 
Sbjct: 59  CSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCK--VVGELLDEAFEL 116

Query: 134 GEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGR 193
            + + K  P    +  F++P   + H                   +S  G G        
Sbjct: 117 AKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQG 176

Query: 194 FLKENNPDIKVY 205
             +    D+ V 
Sbjct: 177 LQECGWGDVPVI 188

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 74.1 bits (181), Expect = 6e-16
 Identities = 43/220 (19%), Positives = 73/220 (33%), Gaps = 18/220 (8%)

Query: 18  TPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVT 76
           TP+ Y   + +    A+I  K E +    + K   A      A+  G        + E  
Sbjct: 51  TPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMG----KTRLIAETG 106

Query: 77  SGNTGVGLAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADSALR-----FE 128
           +G  GV  A   A  G  + I M +            ++ LGA +I  +S  R       
Sbjct: 107 AGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAIN 166

Query: 129 EILEKGEEILKKT--PDGYLLRQFENPANPKIHYETTGPEI---WQDSGGKVDAFISGIG 183
           E L       + T    G ++     P   +      G E      ++ G++   I    
Sbjct: 167 EALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACV 226

Query: 184 TGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLF 223
            GG+      +   N+  +K+ GVE     + +G      
Sbjct: 227 GGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASL 266

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

 Score = 72.0 bits (175), Expect = 3e-15
 Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 17/219 (7%)

Query: 11  VTELIGNTPMVYLNNVV--DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPG 68
           ++ L G+TP++ L           R+ AK E + P  S KDR     +  A +      G
Sbjct: 22  ISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVE-----GG 76

Query: 69  KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE 128
              +   ++GNT    A  AA  G   I+V+P+      ++    +    I+       +
Sbjct: 77  AQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDD 136

Query: 129 EILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV 188
            +    +                   +     +T   E+  + G         +G  G +
Sbjct: 137 ALRLTQKLTEAFPVA----LVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNI 192

Query: 189 T------GAGRFLKENNPDIKVYGVEPSESAVLNGGQRG 221
           T       A   L +     ++ G + + +A L  G+  
Sbjct: 193 TAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPV 231

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

 Score = 63.7 bits (154), Expect = 2e-12
 Identities = 38/207 (18%), Positives = 61/207 (29%), Gaps = 21/207 (10%)

Query: 18  TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS 77
           T +    N+  G    +  K E +    + K          A+  G       T     +
Sbjct: 56  TALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAET----GA 111

Query: 78  GNTGVGLAFIAAARGYNLIIVMPSTCSM---ERRIVLRALGAEIILADSALRFEEILEKG 134
           G  GV  A  +A  G    I M +            +R +GAE+I   S      + +  
Sbjct: 112 GQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSG--SATLKDAC 169

Query: 135 EEILKKTPD---------GYLLRQFENPANPKIHYETTGPEI---WQDSGGKVDAFISGI 182
            E L+             G        P   +      G E      D  G++   +   
Sbjct: 170 NEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIAC 229

Query: 183 GTGGTVTGAGRFLKENNPDIKVYGVEP 209
             GG+          N+  + + GVEP
Sbjct: 230 VGGGSNAIGMFADFINDTSVGLIGVEP 256

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1ve1a1	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	100.0
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	100.0
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	100.0
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	100.0
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	100.0
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	100.0
d1e5xa_	477	Threonine synthase {Mouse-ear cress (Arabidopsis t	100.0
d1v8za1	386	Tryptophan synthase, beta-subunit {Archaeon Pyroco	100.0
d1qopb_	390	Tryptophan synthase, beta-subunit {Salmonella typh	100.0
d1j0aa_	325	1-aminocyclopropane-1-carboxylate deaminase {Archa	100.0
d1tyza_	338	1-aminocyclopropane-1-carboxylate deaminase {Pseud	100.0
d1f2da_	341	1-aminocyclopropane-1-carboxylate deaminase {Yeast	100.0
d1vb3a1	428	Threonine synthase {Escherichia coli [TaxId: 562]}	99.88
d1kl7a_	511	Threonine synthase {Baker's yeast (Saccharomyces c	99.53
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.31
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.13
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.75
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.69
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.61
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.56
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.43
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	95.26
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.1
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.9
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.73
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.55
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.52
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.32
d1vp8a_	190	Hypothetical protein AF0103 {Archaeoglobus fulgidu	93.67
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.51
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.48
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	93.37
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.81
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.6
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.37
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.12
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.86
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	91.75
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	91.71
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	91.64
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	91.15
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.96
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.79
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.08
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	89.65
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	88.93
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	88.75
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.42
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	87.91
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	87.55
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	87.43
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	87.04
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	86.73
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	86.59
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	86.47
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	85.56
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	85.42
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	85.2
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	85.12
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	85.11
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	84.91
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.72
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	84.3
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.16
d1t57a_	186	Hypothetical protein MTH1675 {Methanobacterium the	83.69
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.58
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	83.25
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	83.09
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	82.48
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	82.01
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	81.63
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	81.13
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	80.95
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	80.15

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.3e-56  Score=389.72  Aligned_cols=250  Identities=63%  Similarity=1.030  Sum_probs=225.3

Q ss_pred             hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113            7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF   86 (257)
Q Consensus         7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~   86 (257)
                      +.+.|.+.+|+|||+++++|++.++.+||+|+|++|||||||||++.+++.+|.++|.++++...||++|+||||.|+|+
T Consensus         3 i~~~i~~~iG~TPLv~~~~l~~~~g~~i~~K~E~~nptGSfKdRgA~~~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A~   82 (320)
T d1z7wa1           3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAF   82 (320)
T ss_dssp             CCSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHH
T ss_pred             hhhhhhhhcCCCCeEECCCcccccCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCceEEeeCCchHHHHHHH
Confidence            45678899999999999999998899999999999999999999999999999999998888788999999999999999


Q ss_pred             HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113           87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE  166 (257)
Q Consensus        87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E  166 (257)
                      +|+.+|++++||||.++++.|+++++.+||+|+.++...+..+....+.+...+.++++|+++++|+.|++.||.|++.|
T Consensus        83 ~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~t~~~E  162 (320)
T d1z7wa1          83 TAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPE  162 (320)
T ss_dssp             HHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHH
T ss_pred             HHHhhccceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHHhCCCceecccccccchHHHhhhhHHHH
Confidence            99999999999999999999999999999999999864334444455555556667999999999999989999999999


Q ss_pred             HHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcc------------cceeccccCCeEE
Q 025113          167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG------------LFIFISYLFRSFV  234 (257)
Q Consensus       167 i~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~------------~~~i~~~~~~~~v  234 (257)
                      |++|+.++||+||+|+|+||+++|++.+|+...|.+++|+|||.+++.+.++.++            ++.+.....|+++
T Consensus       163 I~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve~~~s~~~~~~~~~~~~~~gig~~~~~~~~~~~~id~~~  242 (320)
T d1z7wa1         163 IWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV  242 (320)
T ss_dssp             HHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEE
T ss_pred             HHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecccccCCccccCCCCCCceeeeccCCcCcchhhhhhcceee
Confidence            9999977899999999999999999999999999999999999999887654332            2344566789999


Q ss_pred             EeChHHHHHHHHHHHhhcCeec
Q 025113          235 LVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       235 ~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                      .|+|+|+.++++.|+++++++|
T Consensus       243 ~V~d~e~~~a~~~l~~~eGi~v  264 (320)
T d1z7wa1         243 QVSSDESIDMARQLALKEGLLV  264 (320)
T ss_dssp             EECHHHHHHHHHHHHHHHSCCB
T ss_pred             ccCHHHHHHHHHHHHHHCCEEE
Confidence            9999999999999999999987

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=100.00  E-value=1.4e-54  Score=376.81  Aligned_cols=246  Identities=40%  Similarity=0.634  Sum_probs=222.4

Q ss_pred             hhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA   89 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~   89 (257)
                      .|...+|+|||+++++|++..|++||+|+|++|||||||+|++.+++.+|.++|.+.++ .+|+++|+||||+|+|++|+
T Consensus         2 ~i~~~IG~TPL~~~~~l~~~~g~~iy~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~-~~vv~aSsGN~g~a~A~~a~   80 (292)
T d2bhsa1           2 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAA   80 (292)
T ss_dssp             CGGGGSSCCCEEECSSSSCCSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTT-SEEEEECCSHHHHHHHHHHH
T ss_pred             chhcccCCCceEECCccChhhCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhCCcCCC-ceeeeecccchhHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999988775 56999999999999999999


Q ss_pred             HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHh
Q 025113           90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ  169 (257)
Q Consensus        90 ~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~  169 (257)
                      .+|++++||||+++++.|+++++.+||+|+.++.+.++.++...+.+..++. +.+|.+||+|+.+++.|+.++++||++
T Consensus        81 ~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~Ei~~  159 (292)
T d2bhsa1          81 LKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQ  159 (292)
T ss_dssp             HHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHT-SSEECCTTTCTHHHHHHHHTHHHHHHH
T ss_pred             hcCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccc-cccccCCCchhcchhhHHHHHHHHhHH
Confidence            9999999999999999999999999999999997655666666666666665 788999999999988999999999999


Q ss_pred             hhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCccc-----ceeccccCCeEEEeChHHHHHH
Q 025113          170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGL-----FIFISYLFRSFVLVDDGAVVHL  244 (257)
Q Consensus       170 ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~-----~~i~~~~~~~~v~v~d~e~~~a  244 (257)
                      |+++.+|++|+|+|+||+++|++.++|+..+++++++|||++++++......+     ........++++.|+|+|+.++
T Consensus       160 q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ea~~a  239 (292)
T d2bhsa1         160 QTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENT  239 (292)
T ss_dssp             HTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTTCCCCCTTTCCTTCCGGGCSEEEEECHHHHHHH
T ss_pred             hcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEeccccccccccccccccccccccccccccceEEEcCHHHHHHH
Confidence            99878999999999999999999999999999999999999998886533222     2344567899999999999999


Q ss_pred             HHHHHhhcCeecC
Q 025113          245 HNYLLLHIFTLVC  257 (257)
Q Consensus       245 ~~~l~~~~~~~v~  257 (257)
                      +++|+++++++++
T Consensus       240 ~~~L~~~eGi~ve  252 (292)
T d2bhsa1         240 MRELAVREGIFCG  252 (292)
T ss_dssp             HHHHHHHHCCCBC
T ss_pred             HHHHHHHcCeEEe
Confidence            9999999999874

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1e-53  Score=373.10  Aligned_cols=247  Identities=44%  Similarity=0.693  Sum_probs=222.3

Q ss_pred             hhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCc-eEEEEeCCChHHHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK-TTLIEVTSGNTGVGLAFIA   88 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~-~~vv~~ssGN~~~alA~~a   88 (257)
                      ||...+|+|||+++++|++..|.+||+|+|++|||||||+|++.+++.+|.++|.++++. .+|+++|+||||.|+|++|
T Consensus         2 ri~~~ig~TPLi~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~~~vv~~SsGN~g~a~A~~a   81 (302)
T d1ve1a1           2 RVEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIA   81 (302)
T ss_dssp             CGGGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHH
T ss_pred             cccCccCCCCeEECcccchhhCCEEEEEeCCCCcccCcHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCcchhhhhhhh
Confidence            678899999999999999999999999999999999999999999999999999887663 5799999999999999999


Q ss_pred             HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHH
Q 025113           89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW  168 (257)
Q Consensus        89 ~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~  168 (257)
                      +.+|+++++|||+.+++.+++.++.+|++++.+....+..+....+.+..++. +++|++||+|+.+++.|+.|+++||+
T Consensus        82 ~~~g~~~~iv~p~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~EI~  160 (302)
T d1ve1a1          82 ASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELY  160 (302)
T ss_dssp             HHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHH-TCBCCCTTTCHHHHHHHHHTHHHHHH
T ss_pred             hccCcceeEeeecccchheeehhhhhhhcchhcccccchHHHHHHhhhhhhcc-CccccccCccchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999997655566666666666665 88999999999998889999999999


Q ss_pred             hhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcc------------cceeccccCCeEEEe
Q 025113          169 QDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG------------LFIFISYLFRSFVLV  236 (257)
Q Consensus       169 ~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~------------~~~i~~~~~~~~v~v  236 (257)
                      +|++++||+||+|+|+||+++|++.+|+...|+++||||||.+++++..+.+.            ++.....+.++.+.|
T Consensus       161 ~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~iigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~V  240 (302)
T d1ve1a1         161 EALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQV  240 (302)
T ss_dssp             HHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEE
T ss_pred             HHcCCCCCeEEEeecCcHHHHHHHHHHHhcCCCCEEEEEEecccceeeeccccCcccCccCCCcCCchhhhhcceeeeec
Confidence            99987899999999999999999999999999999999999999887643221            233456678899999


Q ss_pred             ChHHHHHHHHHHHhhcCeecC
Q 025113          237 DDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       237 ~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +|+|+.++++.|+++++++++
T Consensus       241 ~d~ea~~a~~~l~~~eGi~v~  261 (302)
T d1ve1a1         241 WEEDAFPLARRLAREEGLFLG  261 (302)
T ss_dssp             CHHHHHHHHHHHHHHHCCCBC
T ss_pred             CHHHHHHHHHHHHHHcCCEEe
Confidence            999999999999999999874

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.3e-54  Score=373.51  Aligned_cols=242  Identities=43%  Similarity=0.633  Sum_probs=215.3

Q ss_pred             hHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113            8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI   87 (257)
Q Consensus         8 ~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~   87 (257)
                      |+.|...+|+|||+++++|.    .+||+|+|++|||||||+|++.+++.+|.++|..++   .|+++|+||||.|+|++
T Consensus         1 ~~~i~~~ig~TPL~~~~~l~----~~i~~K~E~~nptGSfK~Rga~~~i~~a~~~g~~~~---~vv~~SsGN~g~a~A~~   73 (293)
T d1o58a_           1 HHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKN---GIVEPTSGNMGIAIAMI   73 (293)
T ss_dssp             CCHHHHHSCCCCEEECTTTC----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTT---CEEEECSSHHHHHHHHH
T ss_pred             CchhhhhcCCCCcEECCCCC----CEEEEEECCCCCccChHHHHHHHHHHHHHHcCCCCc---ceEEecCcchhhHHHHh
Confidence            46788899999999998764    479999999999999999999999999999987554   48999999999999999


Q ss_pred             HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113           88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI  167 (257)
Q Consensus        88 a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei  167 (257)
                      |+.+|++++||||+++++.|+++++.+||+|+.++.+.+.....+++.+++++. +++|++||+|+.+++.|+.|++.||
T Consensus        74 a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei  152 (293)
T d1o58a_          74 GAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEI  152 (293)
T ss_dssp             HHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHH
T ss_pred             hhhccceeEeeccccccHHHeeccccCCcEEEEecCcchhhHHHHHHHHHHhcc-CCEEeeeccccceeeeccccHHHhh
Confidence            999999999999999999999999999999999997555566677777887776 8899999999998888999999999


Q ss_pred             HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCC-CcEEEEEeCCCCccccCCCccc------------ceeccccCCeEE
Q 025113          168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP-DIKVYGVEPSESAVLNGGQRGL------------FIFISYLFRSFV  234 (257)
Q Consensus       168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~-~~~vigv~~~~~~~~~~~~~~~------------~~i~~~~~~~~v  234 (257)
                      ++|++++||+||+|+|+||+++|++.+||++.+ .+++|+|||++++++.++.+++            +.+.+...|+++
T Consensus       153 ~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii~vep~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~d~~v  232 (293)
T d1o58a_         153 LKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVI  232 (293)
T ss_dssp             HHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEE
T ss_pred             hhhcCCCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEEEEecCCCccccCCCcCCcccccCCCCccchhhhhhhCcEEE
Confidence            999988899999999999999999999998654 5999999999999886543332            234456688999


Q ss_pred             EeChHHHHHHHHHHHhhcCeecC
Q 025113          235 LVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       235 ~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .|+|+|+.++++.|+++++++++
T Consensus       233 ~v~d~e~~~a~~~l~~~eGi~~e  255 (293)
T d1o58a_         233 TVEDEEAYEMARYLAKKEGLLVG  255 (293)
T ss_dssp             EECHHHHHHHHHHHHHHHCCCBC
T ss_pred             EECHHHHHHHHHHHHHHcCCEEe
Confidence            99999999999999999999874

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-52  Score=372.47  Aligned_cols=251  Identities=38%  Similarity=0.578  Sum_probs=215.6

Q ss_pred             hhhHhhhcccCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113            6 AIKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG   83 (257)
Q Consensus         6 ~~~~~i~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a   83 (257)
                      ++++.|...+|+|||+++++|++.+|  .+||+|+|++|||||||||++.+++.+|.+.|+++++ .+|+++|+||||.|
T Consensus        33 ~~~~~i~~~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRga~~~i~~a~~~g~~~~~-~~vv~aSsGN~g~a  111 (355)
T d1jbqa_          33 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIG  111 (355)
T ss_dssp             SEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTT-CEEEEECSSHHHHH
T ss_pred             cccccHHHhcCCCCcEECcchhHHhCCCCEEEEEECCCCCccCHHHHHHHHHHHHHHHcCCcccC-ceEEEecccchhhH
Confidence            45667888999999999999998766  5899999999999999999999999999999988875 56999999999999


Q ss_pred             HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHH---HHHHHHHHHHHhCCCeEEeCCCCCCcchHhhH
Q 025113           84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE---EILEKGEEILKKTPDGYLLRQFENPANPKIHY  160 (257)
Q Consensus        84 lA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  160 (257)
                      +|++|+.+|++++||||.++++.|++.|+.+||+|+.++......   +......+...+.+..+|.+++.++.++++||
T Consensus       112 ~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~  191 (355)
T d1jbqa_         112 LALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHY  191 (355)
T ss_dssp             HHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHH
T ss_pred             HHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHHHhccccccccccCcccchhhhc
Confidence            999999999999999999999999999999999999998643222   23344455555666788899999999988999


Q ss_pred             hhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCC-----c------------ccc
Q 025113          161 ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQ-----R------------GLF  223 (257)
Q Consensus       161 ~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~-----~------------~~~  223 (257)
                      .|+++||++|++++||+||+|+|+||+++|++.+|++..++++|++|||.+++.+....     +            ...
T Consensus       192 ~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~~  271 (355)
T d1jbqa_         192 DTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT  271 (355)
T ss_dssp             HTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCT
T ss_pred             ccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecccCCcccccccccccccccccccccccccchh
Confidence            99999999999888999999999999999999999999999999999999986543200     0            011


Q ss_pred             eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          224 IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       224 ~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .......++++.|+|+|+.++++.|+++++++|.
T Consensus       272 ~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~ve  305 (355)
T d1jbqa_         272 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCG  305 (355)
T ss_dssp             TCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBC
T ss_pred             hhhhhheeeeccCCHHHHHHHHHHHHHHhCcEEe
Confidence            2335567899999999999999999999999874

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=5.6e-54  Score=377.00  Aligned_cols=246  Identities=20%  Similarity=0.316  Sum_probs=219.7

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      ++..++++|+.++++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+.+.    ...|+++|+||||.
T Consensus         7 di~~a~~ri~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~~~~~~~~~~----~~~vv~~ssGN~g~   82 (318)
T d1v71a1           7 DVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQR----KAGVLTFSSGNHAQ   82 (318)
T ss_dssp             HHHHHHHHHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHH----HHCEEECCSSHHHH
T ss_pred             HHHHHHHHHhccCCCCCEEEchhhhHHHCCEEEEEeCCCCCCCCHHHHHHHHHHHHhhhccc----cceeeeeccchhhH
Confidence            35667899999999999999999998889999999999999999999999999998766543    35699999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      ++|++|+.+|++++||+|+++++.++++++.+||+|+.+++  +++++...+++++++. +++|++||+||.+ ..||.|
T Consensus        83 a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t  158 (318)
T d1v71a1          83 AIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR--YKDDREKMAKEISERE-GLTIIPPYDHPHV-LAGQGT  158 (318)
T ss_dssp             HHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECT--TTTCHHHHHHHHHHHH-TCBCCCSSSSHHH-HHHHTH
T ss_pred             HHHHhhcccccceeecccccccHHHHHHHHHcCCcEEeccC--CchHHHHHHHHHHHhc-CCEecCCcccccc-ccccch
Confidence            99999999999999999999999999999999999999985  4777888888888876 8999999999877 789999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----------------------CCc
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----------------------GQR  220 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----------------------~~~  220 (257)
                      +++||++|+ +++|+||+|+|+||+++|++.+++...+++++++|+|.+++++..                      ..+
T Consensus       159 ~~~Ei~~q~-~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~~~~~~~~~~s~~~~~~~~~~~~~~~a~~~~~~~~  237 (318)
T d1v71a1         159 AAKELFEEV-GPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHL  237 (318)
T ss_dssp             HHHHHHHHH-CCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSC
T ss_pred             HHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCCceeecccccchhhhhhccccccccccCCCCccccccccCCc
Confidence            999999999 579999999999999999999999999999999999988765321                      011


Q ss_pred             c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +  .+.+.+...++++.|+|+|+.+|+++|+++++++++
T Consensus       238 ~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~egi~~e  276 (318)
T d1v71a1         238 GNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVE  276 (318)
T ss_dssp             CHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCC
T ss_pred             chHHHHHHHhccCceeeECHHHHHHHHHHHHHHcCcEEe
Confidence            1  235667788999999999999999999999999875

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-52  Score=365.62  Aligned_cols=236  Identities=19%  Similarity=0.189  Sum_probs=214.4

Q ss_pred             ccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCC
Q 025113           14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGY   93 (257)
Q Consensus        14 ~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~   93 (257)
                      .+.+|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|.     .+||++|+||||+|+|++|+.+|+
T Consensus         4 ~~~~TPl~~~~~L~~~~g~~i~~K~E~~nptGSfK~R~a~~~~~~a~~~g~-----~~vv~aSsGN~g~a~A~~a~~~G~   78 (319)
T d1p5ja_           4 LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC-----AHFVCSSAGNAGMAAAYAARQLGV   78 (319)
T ss_dssp             SSCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHHHHHTC
T ss_pred             CceeCCcEEhHHhHHHHCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHcCC-----CEEEEeCCCcHHHHHHHHhhhccc
Confidence            345799999999998889999999999999999999999999999999885     679999999999999999999999


Q ss_pred             cEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCC
Q 025113           94 NLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG  173 (257)
Q Consensus        94 ~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~  173 (257)
                      +++||||+++++.|++.++.+|++|+.+++  +++++.+.+++++++.++++|+++++|+.+ +.|+.+++.||++|++.
T Consensus        79 ~~~i~~p~~~~~~k~~~~~~~Ga~v~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~~q~~~  155 (319)
T d1p5ja_          79 PATIVVPGTTPALTIERLKNEGATCKVVGE--LLDEAFELAKALAKNNPGWVYIPPFDDPLI-WEGHASIVKELKETLWE  155 (319)
T ss_dssp             CEEEEECTTCCHHHHHHHHHTTCEEEECCS--CHHHHHHHHHHHHHHSTTEEECCSSCCHHH-HHHHTHHHHHHHHHCSS
T ss_pred             cceeccccccccccccccccceeccccccc--cchhHHHHHHHHhhccCccccccccccccc-ccccchhhhhhhccccC
Confidence            999999999999999999999999999995  599999999999988878899999999888 78999999999999977


Q ss_pred             CCCEEEEecCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCccccC----C------------------C--cccceeccc
Q 025113          174 KVDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSESAVLNG----G------------------Q--RGLFIFISY  228 (257)
Q Consensus       174 ~~d~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigv~~~~~~~~~~----~------------------~--~~~~~i~~~  228 (257)
                      .||++|+|+|+||+++|++.++++.. +++++++|||.+++++..    +                  .  +..+++++.
T Consensus       156 ~~d~vv~~vg~Gg~~~g~~~~~~~~~~~~~~~i~ve~~~~~~~~~s~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~  235 (319)
T d1p5ja_         156 KPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQE  235 (319)
T ss_dssp             CCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHH
T ss_pred             CCceeeecccCCcchhhhHHHHHHhccCCeeeeecccccccccchhhhccccccccccccccccccccccccccchhhhh
Confidence            89999999999999999999999865 789999999999876531    0                  0  112356677


Q ss_pred             cCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          229 LFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       229 ~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.+.++.|+|+|+.+|+++|+++++++++
T Consensus       236 ~~~~~~~V~d~e~~~a~~~l~~~egi~~e  264 (319)
T d1p5ja_         236 HPIFSEVISDQEAVAAIEKFVDDEKILVE  264 (319)
T ss_dssp             SCEEEEEECHHHHHHHHHHHHHHTCCCCC
T ss_pred             ccceeeecCHHHHHHHHHHHHHHcCEEEe
Confidence            88999999999999999999999999875

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=9.6e-51  Score=355.48  Aligned_cols=248  Identities=38%  Similarity=0.584  Sum_probs=212.4

Q ss_pred             hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113            7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF   86 (257)
Q Consensus         7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~   86 (257)
                      +|++++..+|+|||++++.|+.  +.+||+|+|++|||||||+|++.+++.+|.+.|.+.++ .+||++|+||||.|+|+
T Consensus         2 ~y~~~~~~ig~TPLv~~~~l~~--~~~I~lK~E~~nptGSfK~RgA~~~i~~a~~~g~~~~~-~~vv~~SsGN~g~a~A~   78 (310)
T d1y7la1           2 IYADNSYSIGNTPLVRLKHFGH--NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAY   78 (310)
T ss_dssp             CCSSGGGGCCCCCEEECSSSSS--TTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTT-CEEEESCCSHHHHHHHH
T ss_pred             ccchhhhhcCCCCeEECCCCCC--CCEEEEEECCCCCcCcCHHHHHHHHHHHHHHcCCCCCC-ceeeeecCCCchHHHHH
Confidence            5788899999999999998876  46899999999999999999999999999999988886 56999999999999999


Q ss_pred             HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH-HHHhCCCeEEeCCCCCCcchHhhHhhHHH
Q 025113           87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEE-ILKKTPDGYLLRQFENPANPKIHYETTGP  165 (257)
Q Consensus        87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~t~~~  165 (257)
                      +|+.+|++++||||.++++.|+++++.+||+|+.+++..+..+......+ ..+...+.+++++++|+.++..|+.+++.
T Consensus        79 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  158 (310)
T d1y7la1          79 VAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGP  158 (310)
T ss_dssp             HHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHH
T ss_pred             HHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhhcCccccCCCCcchhhHHHhhhhHHH
Confidence            99999999999999999999999999999999999964322233332222 23334478899999999987889999999


Q ss_pred             HHHhhhCCCCCEEEEecCchhHHHHHHHHHHh-cCCCcEEEEEeCCCCccccC----C-----C---------cccceec
Q 025113          166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKE-NNPDIKVYGVEPSESAVLNG----G-----Q---------RGLFIFI  226 (257)
Q Consensus       166 Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~-~~~~~~vigv~~~~~~~~~~----~-----~---------~~~~~i~  226 (257)
                      ||++|+++.||+||+|+|+||+++|++.++|. ..+++++++|||.+++.+..    .     .         ..++.+.
T Consensus       159 Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk~~~~~~~~~i~ve~~~~~~~~~~~~~~~~~~~~~~~~gig~~~~~~~~~  238 (310)
T d1y7la1         159 EIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD  238 (310)
T ss_dssp             HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCC
T ss_pred             HHHHhcCCCCCEEEecCcCCcchhHHHHHHHHhhcccceeccccccCchhhhhhhcCCccccCCceeeecccccccHHHh
Confidence            99999988899999999999999999999985 78999999999999865431    0     0         0122344


Q ss_pred             cccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          227 SYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       227 ~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ....++++.|+|+|+.++++.|+++++++++
T Consensus       239 ~~~~~~~~~v~d~ea~~~~~~l~~~eGi~ve  269 (310)
T d1y7la1         239 LSIIDRVETVDSDTALATARRLMAEEGILAG  269 (310)
T ss_dssp             GGGCCEEEEECHHHHHHHHHHHHHHHCCCBC
T ss_pred             hhhcceeccCCHHHHHHHHHHHHHHcCCEEe
Confidence            6678999999999999999999999999874

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.3e-52  Score=365.41  Aligned_cols=244  Identities=25%  Similarity=0.313  Sum_probs=214.3

Q ss_pred             chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113            3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV   82 (257)
Q Consensus         3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~   82 (257)
                      +++.++++|...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++..       ..+|+++|+||||.
T Consensus         5 ~i~~a~~~i~~~ig~TPL~~~~~L~~~~g~~i~~K~E~~nPtGSfKdRgA~~~~~~~~~-------~~~vv~aSsGN~g~   77 (310)
T d1ve5a1           5 DLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALEN-------PKGLLAVSSGNHAQ   77 (310)
T ss_dssp             HHHHHHHHHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSSS-------CCCEEEECSSHHHH
T ss_pred             HHHHHHHHHhCcCCCCceeEhhhhhHHhCCEEEEEeCCCCCcCCcHHHHHHHHHHHhcc-------cCCccccCchhhHH
Confidence            56788999999999999999999998889999999999999999999999887765432       23589999999999


Q ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      |+|++|+.+|++++||||++.++.+++.++.+|++++.+++  ++++..+.+++.+++. +++|++||+||.+ +.|+.|
T Consensus        78 a~A~~aa~~G~~~~i~vp~~~~~~~~~~~~~~Ga~vi~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~~g~~t  153 (310)
T d1ve5a1          78 GVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--TAKNREEVARALQEET-GYALIHPFDDPLV-IAGQGT  153 (310)
T ss_dssp             HHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--CTTTHHHHHHHHHHHH-CCEECCSSSSHHH-HHHHHH
T ss_pred             HHHHHHHHcCCeEEEeecccchHHHHHHHhhhccccceeec--cchhHHHHHHHHHHhc-CCcCCCCCCChhh-Hhhhhh
Confidence            99999999999999999999999999999999999999985  4677888888888876 8999999999998 789999


Q ss_pred             HHHHHHhhh---CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----C-----------------
Q 025113          163 TGPEIWQDS---GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----G-----------------  218 (257)
Q Consensus       163 ~~~Ei~~ql---~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~-----------------  218 (257)
                      ++.||++|+   +..||++++|+|+||+++|++.++++..+.+++++|||.+++++..    +                 
T Consensus       154 ~~~Ei~~q~~~~~~~~d~vv~~~g~Gg~~~g~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  233 (310)
T d1ve5a1         154 AGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVR  233 (310)
T ss_dssp             HHHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGC
T ss_pred             hHHHHHHHHHhcCCceeeeeeccCcchhhhhhhhhhhccCCccceEEEEeeccchhhhhhccccccccCccccccccccC
Confidence            999999996   3469999999999999999999999999999999999998876521    0                 


Q ss_pred             --Ccc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          219 --QRG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       219 --~~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                        .++  .+++.+.+.|+++.|+|+|+.+++++|+++++++++
T Consensus       234 ~~~~g~~~~~~~~~~~d~~v~V~d~e~~~a~~~La~~eGi~ve  276 (310)
T d1ve5a1         234 TLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVE  276 (310)
T ss_dssp             CSSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCC
T ss_pred             CCCcchhhHHHhcccCCeEEEECHHHHHHHHHHHHHHcCCEEc
Confidence              011  234567778999999999999999999999999874

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.2e-52  Score=365.34  Aligned_cols=239  Identities=26%  Similarity=0.364  Sum_probs=215.6

Q ss_pred             hhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHH
Q 025113           10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA   89 (257)
Q Consensus        10 ~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~   89 (257)
                      +|...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++.    ..+|+++|+||||.|+|++|+
T Consensus        20 ~v~~~~~~TPL~~~~~L~~~lg~~i~~K~E~~nptGS~KdRga~~~i~~~~~~~~----~~~vv~assGN~g~a~A~~a~   95 (331)
T d1tdja1          20 PVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQK----AHGVITASAGNHAQGVAFSSA   95 (331)
T ss_dssp             CGGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSC----SSSCEEEECSSSHHHHHHHHH
T ss_pred             ccceeccCCceeEHHHhhHHHCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhCC----CCeeeecccchhHHHHHHhhc
Confidence            6778899999999999999999999999999999999999999999999876654    356999999999999999999


Q ss_pred             HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHh
Q 025113           90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ  169 (257)
Q Consensus        90 ~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~  169 (257)
                      .+|+++++|||+.++..|++.|+.+||+|+.++.  ++++..+.+.+++++. +++|+++++||.+ +.||.|++.||++
T Consensus        96 ~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~  171 (331)
T d1tdja1          96 RLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NFDEAKAKAIELSQQQ-GFTWVPPFDHPMV-IAGQGTLALELLQ  171 (331)
T ss_dssp             HTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SHHHHHHHHHHHHHHH-CCEECCSSCCHHH-HHHHHHHHHHHHH
T ss_pred             cccccceeeccccchhHHHHHHHhcCCEEEEcCc--ccccchhhhhhhhhcC-CCccccccCChHH-hhhhhhHHHHHHH
Confidence            9999999999999999999999999999999985  4888888888887776 8999999999988 7899999999999


Q ss_pred             hhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----C------------------Ccc--ccee
Q 025113          170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----G------------------QRG--LFIF  225 (257)
Q Consensus       170 ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~------------------~~~--~~~i  225 (257)
                      |. ++||+||+|+|+||+++|++.+|+++.|+++||+|||.+++++..    +                  .++  .+++
T Consensus       172 q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~  250 (331)
T d1tdja1         172 QD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRL  250 (331)
T ss_dssp             HC-TTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHHH
T ss_pred             hc-CCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEecccccchHHHHHhCCCeeecCCCCceeccccCCCCCHHHHHH
Confidence            98 579999999999999999999999999999999999999876531    0                  011  1345


Q ss_pred             ccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          226 ISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       226 ~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      .+...|+++.|+|+|+.+|++.|+++++++++
T Consensus       251 ~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~e  282 (331)
T d1tdja1         251 CQEYLDDIITVDSDAICAAMKDLFEDVRAVAE  282 (331)
T ss_dssp             HTTSCCEEEEECHHHHHHHHHHHHHHTCCCCC
T ss_pred             hhccCCEEEEecHHHHHHHHHHHHHHcCcEEe
Confidence            67788999999999999999999999999875

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=1.7e-50  Score=361.17  Aligned_cols=249  Identities=24%  Similarity=0.287  Sum_probs=211.5

Q ss_pred             chhhhhHhhhccc---CCCCceecccccCCCCceEEEEeCCCCCCC-ChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCC
Q 025113            3 DNNAIKRDVTELI---GNTPMVYLNNVVDGCVARIAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSG   78 (257)
Q Consensus         3 ~~~~~~~~i~~~~---~~TPl~~~~~l~~~~~~~l~~K~E~~~ptG-S~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssG   78 (257)
                      |.+++++...+.+   +||||+++ ++....|++||+|+|++|||| |||||++.+++.+|.+  .+++| .+|+++|+|
T Consensus        78 ~~~~~~~~~l~~~~~~~PTPLvrl-~l~~~~G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~--~~~~g-~~VVeaSSG  153 (382)
T d1wkva1          78 PGEMVFPSPLDFFERGKPTPLVRS-RLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSR--RVEKG-SLVADATSS  153 (382)
T ss_dssp             CTTCEESSHHHHHHHSCSCCEEEC-CCCCSTTEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTT--TSCTT-CEEEEECCH
T ss_pred             CcceEeCCHHHHhcCCCCCCEEEC-CCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHh--ccCCC-CEEEEeCCc
Confidence            4456666655555   56999998 566667899999999999986 9999999999999854  35565 459999999


Q ss_pred             hHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHh
Q 025113           79 NTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKI  158 (257)
Q Consensus        79 N~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (257)
                      |||.|+|++|+.+|++++||||+++++.|++.++.+||+|+.++...+..+..+++.+.+++. +++|++|++||.+++.
T Consensus       154 N~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~-~~~~~~q~~N~~~~~~  232 (382)
T d1wkva1         154 NFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNE-GFVHVNQFYNDANFEA  232 (382)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHH-CCEECCTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeecCcchhhHHHHHHHhhhcccc-Cccccccccccceeee
Confidence            999999999999999999999999999999999999999999987545556666666666665 7899999999999899


Q ss_pred             hHhhHHHHHHhhhC---CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCc---c-cceeccccCC
Q 025113          159 HYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR---G-LFIFISYLFR  231 (257)
Q Consensus       159 g~~t~~~Ei~~ql~---~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~---~-~~~i~~~~~~  231 (257)
                      ||.|++.||++|+.   ..+|++|+|+|+||+++|++.++|+..|++++|+|||.+++.+.+...   + .+.-..+..+
T Consensus       233 h~~ttg~EI~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~~~~i~g~~~i~~g~~~~~~~d~~~  312 (382)
T d1wkva1         233 HMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINMLDISY  312 (382)
T ss_dssp             HHHTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTCCCGGGCCSHHHHSCCCC
T ss_pred             hhhcchHHHHHHhhcCCCceeEEEEecccccccccceeehhhhCCccceeEeccccccccccccccccCccCccccccce
Confidence            99999999999983   368999999999999999999999999999999999999988764211   1 1111224567


Q ss_pred             eEEEeChHHHHHHHHHHHhhcCeec
Q 025113          232 SFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       232 ~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                      +++.|+|+|+.+++++|+++++++|
T Consensus       313 ~i~~Vsd~Eai~a~r~La~~EGI~v  337 (382)
T d1wkva1         313 TLAEVTLEEAMEAVVEVARSDGLVI  337 (382)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHSCCB
T ss_pred             EEEEECHHHHHHHHHHHHHHcCCEE
Confidence            8999999999999999999999986

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=4.2e-49  Score=343.47  Aligned_cols=246  Identities=42%  Similarity=0.624  Sum_probs=206.7

Q ss_pred             hhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHH
Q 025113            6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA   85 (257)
Q Consensus         6 ~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA   85 (257)
                      ++|++++..+|+|||++++++.   +.+||+|+|++|||||||+|++.+++.++.+.|++.+| .+++++|+||||.|+|
T Consensus         2 k~~~~i~~~ig~TPLi~L~~l~---~~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~-~~vv~assGn~g~a~A   77 (302)
T d1fcja_           2 KIYEDNSLTIGHTPLVRLNRIG---NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPG-VELVEPTNGNTGIALA   77 (302)
T ss_dssp             CEESSGGGGCCCCCEEECSSSS---SSCEEEEETTSSGGGBTHHHHHHHHHHHHHHHTCCCTT-CEEEEECSSHHHHHHH
T ss_pred             chHhHHHHhhCCCCcEECCccC---CCEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCCCCC-ceEEEeccccchhHHH
Confidence            4678899999999999987654   45899999999999999999999999999999998887 5699999999999999


Q ss_pred             HHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH---HHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113           86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEE---ILKKTPDGYLLRQFENPANPKIHYET  162 (257)
Q Consensus        86 ~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~t  162 (257)
                      ++|+.+|++++||||.++++.++.+++.+|++|+.+++.  +.+....++.   ..++..+.++.++++++.++..|+.|
T Consensus        78 ~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  155 (302)
T d1fcja_          78 YVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA--KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKT  155 (302)
T ss_dssp             HHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG--GHHHHHHHHHHHHHHTSTTTEEECCTTTCTHHHHHHHHT
T ss_pred             HHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccc--cccchhhhHHHHHHhhhccceeccccccccchhHHHHhH
Confidence            999999999999999999999999999999999999964  4333333222   22333467888999999988899999


Q ss_pred             HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcE--EEEEeCCCCccccC-----------------CC-ccc
Q 025113          163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIK--VYGVEPSESAVLNG-----------------GQ-RGL  222 (257)
Q Consensus       163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~--vigv~~~~~~~~~~-----------------~~-~~~  222 (257)
                      ++.||++|++++||+||+|+|+||+++|++.++|.+.++++  ++++++..+..+..                 +. ..+
T Consensus       156 i~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~gig~~~~~  235 (302)
T d1fcja_         156 TGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIP  235 (302)
T ss_dssp             HHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTTTCCTTCEEEEEEETTSCHHHHHHTTCCCCCCCCSCTTSCCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEEcCCCccccccceeeeeeccccccccccccccccchhhhccccccccccCCceecccCCCcCc
Confidence            99999999987899999999999999999999999988654  55666666543210                 00 012


Q ss_pred             ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          223 FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       223 ~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +.+...+.|++++|+|+|+.++++.|+++++++++
T Consensus       236 ~~l~~~~~d~~~~Vsd~ea~~a~~~l~~~~gi~~e  270 (302)
T d1fcja_         236 GNLDLKLIDKVVGITNEEAISTARRLMEEEGILAG  270 (302)
T ss_dssp             TTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCCC
T ss_pred             hhhhcccCcEEEEECHHHHHHHHHHHHHHcCCEEc
Confidence            34556678999999999999999999999999874

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.6e-44  Score=315.83  Aligned_cols=240  Identities=20%  Similarity=0.197  Sum_probs=205.3

Q ss_pred             hHhhhcccCCCCceecccc--cCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHH
Q 025113            8 KRDVTELIGNTPMVYLNNV--VDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA   85 (257)
Q Consensus         8 ~~~i~~~~~~TPl~~~~~l--~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA   85 (257)
                      .+.|+..+|+|||++++++  +...|++||+|+|++|||||||+|++.+++.++.+.|.     .+++++|+||||.++|
T Consensus        19 ~~~i~~~~gnTPLv~l~~~~l~~~~g~~i~~K~E~~nptGSfK~R~a~~~i~~a~~~g~-----~~iv~~SsGN~g~a~a   93 (351)
T d1v7ca_          19 TPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVACASTGNTAASAA   93 (351)
T ss_dssp             SCCCCSCCCCCCEEECCCCHHHHTTTEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC-----SEEEEECSSHHHHHHH
T ss_pred             CCccccCCCCCCCeECCCcchhhccCCEEEEEEcCCCCccChHHHHHHHHHHHHHhcCC-----CeeeeeccccHHHHHH
Confidence            3457888999999999864  56678999999999999999999999999999998874     6799999999999999


Q ss_pred             HHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHH
Q 025113           86 FIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG  164 (257)
Q Consensus        86 ~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~  164 (257)
                      ++|+++|++++|+||++. +..+..+++.+||+|+.+++  +++++.+.+++++++. ++++. +++|+.+ +.||.|++
T Consensus        94 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~~~~--~~~~~~~~a~~l~~~~-~~~~~-~~~~~~~-~~g~~t~~  168 (351)
T d1v7ca_          94 AYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALRLTQKLTEAF-PVALV-NSVNPHR-LEGQKTLA  168 (351)
T ss_dssp             HHHHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-SCEEC-STTSHHH-HHHHTHHH
T ss_pred             HHHhhhcccceeecCCchHHHHHHHhhhcCCCceEeecc--ccchhhhhHHHHhhhh-ccccc-cccCchh-hhhhhhHH
Confidence            999999999999999875 57788889999999999995  5899999999999887 66554 4456665 78999999


Q ss_pred             HHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhc------CCCcEEEEEeCCCCccccCCCc----------------c-
Q 025113          165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKEN------NPDIKVYGVEPSESAVLNGGQR----------------G-  221 (257)
Q Consensus       165 ~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~------~~~~~vigv~~~~~~~~~~~~~----------------~-  221 (257)
                      +||++|+...+|++++++|+||+++|++.+++..      .+.+++++|++.++.++....+                . 
T Consensus       169 ~Ei~eQl~~~~d~~~~~~g~gg~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (351)
T d1v7ca_         169 FEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPAS  248 (351)
T ss_dssp             HHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCSSCTT
T ss_pred             HHHHHHHhhhccceeeeecccCCcchhHHHHHHHhhcccccCCcceeeeeccccchhhhcccccCCcccccccccccCcc
Confidence            9999999878999999999999999999887653      4679999999998765432111                0 


Q ss_pred             ---cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          222 ---LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       222 ---~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                         .+.+.+...+.++.|+|+|+.+|++.|+++++++++
T Consensus       249 ~~~~~~~~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~  287 (351)
T d1v7ca_         249 WQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCE  287 (351)
T ss_dssp             HHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBC
T ss_pred             cchhhhhhhccCcEEEEEchHHHHHHHHHHHHHcCcEEC
Confidence               123456677889999999999999999999999875

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-43  Score=327.07  Aligned_cols=244  Identities=15%  Similarity=0.084  Sum_probs=206.2

Q ss_pred             hHhhhcccCCCCceecccccCC-CC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHH
Q 025113            8 KRDVTELIGNTPMVYLNNVVDG-CV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA   85 (257)
Q Consensus         8 ~~~i~~~~~~TPl~~~~~l~~~-~~-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA   85 (257)
                      ...|++++|+|||+++++|++. .| .+||+|+|++|||||||||++.+++..+.+.+....+..+|+++|+||||.|+|
T Consensus       112 ~~~v~lgeG~TPLv~~~~L~~~~lG~~~ly~K~E~~nPTGSfKDRga~~~i~~a~~~~~~~~~~~~vv~aSsGNtg~AlA  191 (477)
T d1e5xa_         112 DDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALS  191 (477)
T ss_dssp             GGCCCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCCCCEEEECCCSHHHHHHH
T ss_pred             CCccccCCCCCceEEchhhhHhhCCCceEEEEECCCCCCcccHHHHHHHHHHHHHHhccccCCcceEEeecCchHHHHHH
Confidence            4568999999999999999865 45 489999999999999999999999999887666555567899999999999999


Q ss_pred             HHHHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHH
Q 025113           86 FIAAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG  164 (257)
Q Consensus        86 ~~a~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~  164 (257)
                      ++|+.+|++++||||.+ .+..|+.+++.+||+|+.+++  +++++.+.+++++++. + +|+.++.||.+ +.|+.|++
T Consensus       192 a~aa~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g--~~dda~~~~~e~a~~~-~-~~~~~~~N~~~-~~g~~t~~  266 (477)
T d1e5xa_         192 AYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDGCMKLIREITAEL-P-IYLANSLNSLR-LEGQKTAA  266 (477)
T ss_dssp             HHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-C-EEEGGGSHHHH-HHHHTHHH
T ss_pred             HHHHhcCCCeEEEeCCCCcCHHHHHHHHhcCcccccccc--CchhhHHHhhhhcccc-c-eeccccccccc-chhhhHHH
Confidence            99999999999999985 688899999999999999995  5999999999998875 4 56777888888 67999999


Q ss_pred             HHHHhhhCC-CCCEEEEecCchhHHHHHHHHHHhc------CCCcEEEEEeCCCCccccC----C---------------
Q 025113          165 PEIWQDSGG-KVDAFISGIGTGGTVTGAGRFLKEN------NPDIKVYGVEPSESAVLNG----G---------------  218 (257)
Q Consensus       165 ~Ei~~ql~~-~~d~iv~pvG~Gg~~aGi~~~~k~~------~~~~~vigv~~~~~~~~~~----~---------------  218 (257)
                      +||++|+++ .||++++|+|+||+++|++.+++.+      ...+++++||+.+++++..    +               
T Consensus       267 ~Ei~~ql~~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~~~~P~~~~v~a~~~~~~~~~~~~g~~~~~~~~~~~T~a~  346 (477)
T d1e5xa_         267 IEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFAS  346 (477)
T ss_dssp             HHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC---------
T ss_pred             HHHHHhhccccceeeeecccCCcchhhHHHHHHHHhhcCccccCceEEEEeccchhhHHHHHHcCCCccccccccccccc
Confidence            999999965 5999999999999999999999864      2357999999999877531    1               


Q ss_pred             -----Ccccc----eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          219 -----QRGLF----IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       219 -----~~~~~----~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                           .|..+    ...+...+.++.|+|+|+.+|+++ ++++++++|
T Consensus       347 ~i~i~~p~~~~~~l~~~~~~~g~~~~VsDeei~~a~~l-~~~eGi~ve  393 (477)
T d1e5xa_         347 AIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQ-ADSTGMFIC  393 (477)
T ss_dssp             -------CCCHHHHHHHHHTTCEEEEECHHHHHHHHHH-HHHTTCCCC
T ss_pred             ccccccccchHHHHHHHhhcCceEEecCHHHHHHHHHH-HHHCCcEEC
Confidence                 01111    123445667899999999999985 577899886

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.2e-41  Score=305.78  Aligned_cols=240  Identities=19%  Similarity=0.191  Sum_probs=188.8

Q ss_pred             cccC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHH
Q 025113           13 ELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA   90 (257)
Q Consensus        13 ~~~~-~TPl~~~~~l~~~~-~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~   90 (257)
                      .+++ ||||+++++|++.+ +.+||+|+|++|||||||||++.+++..|.+.|+    .+.++++|+||||.++|++|+.
T Consensus        45 ~~~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS~KdR~a~~~i~~a~~~G~----~~~v~~~s~Gn~g~a~A~aaa~  120 (386)
T d1v8za1          45 TWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGK----TRLIAETGAGQHGVATAMAGAL  120 (386)
T ss_dssp             HTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHH
T ss_pred             hcCCCCCcceEhHhhHHhcCCCeEEEEeccCCCCCCccchHHHHHHHHHhhcCC----ceeEeecccchHHHHHHHHHHH
Confidence            3455 79999999999876 5799999999999999999999999999999986    3568888999999999999999


Q ss_pred             cCCcEEEEeCC---CCCHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHH-HHhCCCeEE-----eCCCCCCcchHhhH
Q 025113           91 RGYNLIIVMPS---TCSMERRIVLRALGAEIILADS-ALRFEEILEKGEEI-LKKTPDGYL-----LRQFENPANPKIHY  160 (257)
Q Consensus        91 ~g~~~~i~vp~---~~~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~g~  160 (257)
                      +|++|+||||.   .....|+.+++.+||+|+.++. ..++.++...+.+. ........+     ..+++++.++..++
T Consensus       121 ~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (386)
T d1v8za1         121 LGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQ  200 (386)
T ss_dssp             TTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHH
T ss_pred             cCCcccccccchhhhhhHHHHHHHHhcCCeEEEecCCcchHHHHHHHHHHHHHhhhhhhhhccccccCccccchhhhccc
Confidence            99999999995   3456899999999999999985 34577776665443 333222222     33455555666789


Q ss_pred             hhHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCC--------C---------
Q 025113          161 ETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGG--------Q---------  219 (257)
Q Consensus       161 ~t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~--------~---------  219 (257)
                      .+++.|+.+|+    +..||+||+|+|+|++++|++.++++ .+++++|+|+|.++....+.        .         
T Consensus       201 ~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~~-~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~~  279 (386)
T d1v8za1         201 SVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN-DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLS  279 (386)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEE
T ss_pred             hhhhhhHHHHHHHhcCCCCCEEEECCCChHHHHHHHHHhhh-ccCceEEEEecCcccccccccccccccCccccccchhh
Confidence            99999998886    35689999999999999999876554 68999999999876543210        0         


Q ss_pred             ------ccc--------------------ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          220 ------RGL--------------------FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       220 ------~~~--------------------~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                            .+.                    ..+.....++++.|+|+|+.+++++|+++++++++
T Consensus       280 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~VtD~E~~~a~~~La~~EGI~~~  343 (386)
T d1v8za1         280 YFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPA  343 (386)
T ss_dssp             EECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCCBC
T ss_pred             eeccCCCCcccccccccccccccccchHHHHHHhcCceEEEEECHHHHHHHHHHHHHhcCCeec
Confidence                  000                    01122234578999999999999999999999864

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=5.3e-40  Score=294.93  Aligned_cols=240  Identities=19%  Similarity=0.203  Sum_probs=186.7

Q ss_pred             hcccC-CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHH
Q 025113           12 TELIG-NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA   90 (257)
Q Consensus        12 ~~~~~-~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~   90 (257)
                      ..++| ||||+++++|++.+|++||+|+|++|||||||+|++..++..|.+.|+    ...++++|+||||.|+|++|++
T Consensus        49 ~~~~grpTPL~~~~~Ls~~lg~~IylK~E~lnptGS~K~R~a~~~i~~A~~~G~----~~iv~easaGN~g~a~A~aaa~  124 (390)
T d1qopb_          49 KNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGK----SEIIAETGAGQHGVASALASAL  124 (390)
T ss_dssp             HHTTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHH
T ss_pred             HhcCCCCchhhEhHhhhhhhCCEEEEEEecCCcccccchhHHHHHHHHHhhcCC----ceeeeehhHHHHHHHHHHHHHh
Confidence            34554 599999999999999999999999999999999999999999999986    4566789999999999999999


Q ss_pred             cCCcEEEEeCCCCC---HHHHHHHHHCCCEEEEECC-CCCHHHHHHHH-HHHHHhCCCeEEeCCCCCCcc-----hHhhH
Q 025113           91 RGYNLIIVMPSTCS---MERRIVLRALGAEIILADS-ALRFEEILEKG-EEILKKTPDGYLLRQFENPAN-----PKIHY  160 (257)
Q Consensus        91 ~g~~~~i~vp~~~~---~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~g~  160 (257)
                      +|++|+||||...+   ..++.+|+.+||+|+.++. ..++.+....+ +..+......++.....+...     ...++
T Consensus       125 ~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (390)
T d1qopb_         125 LGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQ  204 (390)
T ss_dssp             HTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTT
T ss_pred             ccCceEEeecccccccchHHHHHHHhcCceEEEecCCchhhhHhHHHHHHHHhhhhhhhhhccccccccccccccccchh
Confidence            99999999998554   6779999999999999974 34566655544 444444434455443322211     23588


Q ss_pred             hhHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC--------CCcc-------
Q 025113          161 ETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG--------GQRG-------  221 (257)
Q Consensus       161 ~t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~--------~~~~-------  221 (257)
                      .+++.|+.+|+    +..||+||+|+|+|++++|++.+|++ .+.+++++++|.+......        +.++       
T Consensus       205 ~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~~~f~~-~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~  283 (390)
T d1qopb_         205 RMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIN-DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKA  283 (390)
T ss_dssp             THHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEE
T ss_pred             hhhcchhHHHHHHHcCCccceEEecccccchhhheeccccc-ccceeEeccccccccccccccccccccCcccccccccc
Confidence            99999997774    45699999999999999999998876 4579999999876432211        0000       


Q ss_pred             ------------c----------------ceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113          222 ------------L----------------FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV  256 (257)
Q Consensus       222 ------------~----------------~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v  256 (257)
                                  +                ..+.+...++++.|+|+|+.+|+++|++.|+|++
T Consensus       284 ~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g~~~~~~vtD~Ea~~a~~~La~~EGI~~  346 (390)
T d1qopb_         284 PMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIP  346 (390)
T ss_dssp             EECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHHHHHSCCB
T ss_pred             cccccCCCccccccccccccccccchhHHHHHHhcCceEEEEECHHHHHHHHHHHHHhcCCee
Confidence                        0                0111223467999999999999999999999985

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=4.3e-38  Score=274.69  Aligned_cols=249  Identities=19%  Similarity=0.140  Sum_probs=190.2

Q ss_pred             hhhHhhhcccCCCCceecccccCCCCceEEEEeCCCC--CCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113            6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETME--PCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG   83 (257)
Q Consensus         6 ~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~--ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a   83 (257)
                      ...++++...++|||+++++|++.+|++||+|+|++|  ||||||+|++.+++.++.++|.   ....++++|+||||.|
T Consensus        10 ~~~p~i~l~~~~TPL~~~~~L~~~~G~~v~iK~Ed~~~~~tgS~K~R~~~~~i~~a~~~g~---~~~~~~~~s~gN~g~a   86 (325)
T d1j0aa_          10 AKFPRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGA---DVVITVGAVHSNHAFV   86 (325)
T ss_dssp             TTCCCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTC---SEEEEECCTTCHHHHH
T ss_pred             HhCCcccCCCCCCceeEHHHhHHHHCCEEEEEecCCCCCCcchhHHHHHHHHHHHHHHCCC---CeeEEEeeCcchHHHH
Confidence            4557889999999999999999888999999999877  9999999999999999998875   1223445688999999


Q ss_pred             HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHC-CCEEEEECCCCCH-H-H-HHHHHHHHHHhCCCeEEeCCCCCCcchHhh
Q 025113           84 LAFIAAARGYNLIIVMPSTCSMERRIVLRAL-GAEIILADSALRF-E-E-ILEKGEEILKKTPDGYLLRQFENPANPKIH  159 (257)
Q Consensus        84 lA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~-Ga~v~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  159 (257)
                      +|++|+.+|+++++|+|...+..+...+..+ +..+..++..... . . ....+..........+++.+..+......+
T Consensus        87 ~A~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (325)
T d1j0aa_          87 TGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLG  166 (325)
T ss_dssp             HHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHHHTH
T ss_pred             HHHHHhhhcCceEEEeecccccchhhhhccccceeEEeccCcccccchHHHHHHHHHHHhhccCceeeecCCCccccccc
Confidence            9999999999999999998776655554443 3344444432222 1 1 122233333333355555554444444668


Q ss_pred             HhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC---------------CCcccce
Q 025113          160 YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG---------------GQRGLFI  224 (257)
Q Consensus       160 ~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~---------------~~~~~~~  224 (257)
                      +.+++.|+.+|.++.+|+||+|+|+|++++|++.+++...+++++++|++........               .....+.
T Consensus       167 ~~~~~~e~~~~~~~~~d~vv~~~G~G~~~~gi~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (325)
T d1j0aa_         167 YVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRP  246 (325)
T ss_dssp             HHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred             cchhhcccccccccccceeecccccchhhhhHHHHHHhhCccccccccccccchhhhhhhhcccccccccccCCCcccch
Confidence            8999999999998889999999999999999999999999999999999998765321               0111223


Q ss_pred             eccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          225 FISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       225 i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      ......++.+.|+|+|+.++++.|+++++++++
T Consensus       247 ~~~~~~~~~~~v~d~e~~~a~~~l~~~eGI~~e  279 (325)
T d1j0aa_         247 ELYDYSFGEYGKITGEVAQIIRKVGTREGIILD  279 (325)
T ss_dssp             EEEECSTTSTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred             hhhhceecceeechHHHHHHHHHHHHHcCCcCC
Confidence            334456678889999999999999999999875

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

Probab=100.00  E-value=1.2e-36  Score=264.30  Aligned_cols=250  Identities=16%  Similarity=0.055  Sum_probs=190.5

Q ss_pred             hhhhhHhhhcccCCCCceecccccCCCC--ceEEEEeCCCCCCCCh---hhHHHHHHHHHHHHcCCCCCCceEEEEeCCC
Q 025113            4 NNAIKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSV---KDRIAYSMIKDAEDKGLITPGKTTLIEVTSG   78 (257)
Q Consensus         4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~---K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssG   78 (257)
                      ++..++|+++.+++|||+++++|++.+|  ++||+|+|++||||||   |+|++.+++.++.++|.   ....++++|+|
T Consensus         2 ~~~~~~r~~l~~g~TPL~~~~~L~~~lg~~~~i~~K~E~~~ptgS~~gnK~R~~~~~i~~a~~~g~---~~v~~~~~s~g   78 (338)
T d1tyza_           2 NLQRFPRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGC---DTLVSIGGIQS   78 (338)
T ss_dssp             CGGGSCCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHHHHHHHHHTTC---CEEEEEEETTC
T ss_pred             CcccCCccccCCCCCceeEhHHHHHHHCCCCEEEEEECCCCCCcccccCHHHHHHHHHHHHHHCCC---CeEEEEccCCc
Confidence            3456778999999999999999998776  5899999999999999   99999999999999885   12233467999


Q ss_pred             hHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHCCCEEEEECCCCCH--H-HHHHHHHHHHHhCCCeEEe
Q 025113           79 NTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSALRF--E-EILEKGEEILKKTPDGYLL  147 (257)
Q Consensus        79 N~~~alA~~a~~~g~~~~i~vp~~~~--------~~~~~~l~~~Ga~v~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~  147 (257)
                      |||.|+|++|+.+|++|+||||...+        ..+.+.+..+|+.+..++...+.  . ...+.+.......++.++.
T Consensus        79 N~g~A~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T d1tyza_          79 NQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAI  158 (338)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEECCCC-------CHHHHHHHHHHHTTCCEEEE
T ss_pred             hHHHHHHHHHhhccCcEEEEECCCcchhhhhhhhccccceeeeeccccccccCCcchhHHHHHHHHHhhhhhcccceeee
Confidence            99999999999999999999997654        34566788999999999853211  1 1222233333444455555


Q ss_pred             CCCCCCcchHhhHhhHHHHHHh-----hhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC-----
Q 025113          148 RQFENPANPKIHYETTGPEIWQ-----DSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG-----  217 (257)
Q Consensus       148 ~~~~~~~~~~~g~~t~~~Ei~~-----ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~-----  217 (257)
                      .+..++.. ..+..+.+.|...     +.+..||+||+|+|+|++++|++.+++.+...++++++++..+.....     
T Consensus       159 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~iv~~~G~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (338)
T d1tyza_         159 PAGCSDHP-LGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITR  237 (338)
T ss_dssp             CGGGTSST-TTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGGGEEEEECSSCHHHHHHHHHH
T ss_pred             cccCccCc-cccccccchHHHHHHHHHhcCCCccEEEEeecChhHHHHHHHHHHHHhhhhcccceeeccchhhhcccccc
Confidence            44433332 4455555554433     344679999999999999999999999999999999999988754321     


Q ss_pred             ----------C----CcccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          218 ----------G----QRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       218 ----------~----~~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                                .    ....+.+.....+..+.|+|+|+.++++.|+++++++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ei~~a~~~l~~~eGI~~e  291 (338)
T d1tyza_         238 IARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTD  291 (338)
T ss_dssp             HHHHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCC
T ss_pred             ccccccccccccCcccchhhhhhhhcccceEEEChHHHHHHHHHHHHHhCCcCC
Confidence                      0    112345667778889999999999999999999999975

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

Probab=100.00  E-value=2.7e-35  Score=256.64  Aligned_cols=248  Identities=15%  Similarity=0.089  Sum_probs=192.1

Q ss_pred             hhhHhhhcccCCCCceecccccCCCC--ceEEEEeCCCCCCCCh---hhHHHHHHHHHHHHcCCCCCCceEEEEeCCChH
Q 025113            6 AIKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSV---KDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNT   80 (257)
Q Consensus         6 ~~~~~i~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~---K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~   80 (257)
                      ..++++.+.+++|||+++++|++.+|  .+||+|+|++||+|||   |+|++.+++.++.+.|.   ....++++|+|||
T Consensus         4 ~~~~~~~l~~~~TPl~~~~~L~~~lg~~~~i~~K~E~~~p~GSf~gnK~R~~~~~i~~a~~~g~---~~i~~~~as~gN~   80 (341)
T d1f2da_           4 AKFAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDY---THLVSIGGRQSNQ   80 (341)
T ss_dssp             TSSCCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCC---SEEEEEEETTCHH
T ss_pred             ccccCccCCCCCCceeEHHHHHHHHCCCCEEEEEECCCCCCCccccChHHHHHHHHHHHHHCCC---CEEEEEccCcchH
Confidence            44667889999999999999998877  4899999999999999   99999999999999885   1223456899999


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCCCCHH-----------HHHHHHHCCCEEEEECCCCCH---HHHHHHHHHHHHhCCCeEE
Q 025113           81 GVGLAFIAAARGYNLIIVMPSTCSME-----------RRIVLRALGAEIILADSALRF---EEILEKGEEILKKTPDGYL  146 (257)
Q Consensus        81 ~~alA~~a~~~g~~~~i~vp~~~~~~-----------~~~~l~~~Ga~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  146 (257)
                      |+|+|++|+.+|+++++|||.+.+..           ++..++.+|+++..++...+.   .................++
T Consensus        81 g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (341)
T d1f2da_          81 TRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYP  160 (341)
T ss_dssp             HHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHhcCceEEEccCCCCHHHHHHHHHhhccceechhhccccccccCCchhhHHHHHHHHHHHHHHhhccCccc
Confidence            99999999999999999999876543           456778899999999853211   2223333334344434444


Q ss_pred             eCCC--CCCcchHhhHhhHHHHHHhhh---CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----
Q 025113          147 LRQF--ENPANPKIHYETTGPEIWQDS---GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----  217 (257)
Q Consensus       147 ~~~~--~~~~~~~~g~~t~~~Ei~~ql---~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----  217 (257)
                      ....  .++.. ..++.+.+.++.+|.   ...||++|+|+|+|++++|++.+++...+.++++++.+........    
T Consensus       161 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (341)
T d1f2da_         161 IPAGCSEHKYG-GLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTL  239 (341)
T ss_dssp             ECGGGTTSTTT-TTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHH
T ss_pred             cCCcccccccc-hhhehhhhHHHHHHHhhccCCceEEEEecccccchhhHHHHHHHhcccccccccccccchhhhhhhhh
Confidence            3332  23333 456777777776663   4579999999999999999999999999999999999988753211    


Q ss_pred             -------------CCcccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          218 -------------GQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       218 -------------~~~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                                   .....+.+.....+..+.|+|+|+.++++.|+++++++||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGI~ve  292 (341)
T d1f2da_         240 RIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTD  292 (341)
T ss_dssp             HHHHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCC
T ss_pred             ccccccccccccCCCccccccccccceeEEEEChHHHHHHHHHHHHHhCcccC
Confidence                         1112245566777888999999999999999999999985

>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=9.2e-22  Score=176.25  Aligned_cols=230  Identities=13%  Similarity=0.007  Sum_probs=165.0

Q ss_pred             CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHc-CCcE
Q 025113           17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR-GYNL   95 (257)
Q Consensus        17 ~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~-g~~~   95 (257)
                      +.|+.++..       ++|+...+++||+|||||++..+...+...+.  .+...|+++||||+|.|++.+++.. ++++
T Consensus        83 ~~p~~~~~~-------~~~~lELfhGPT~aFKD~a~~~~~~~~~~~~~--~~~~~Il~ATSGDTG~Aa~~a~~~~~~i~~  153 (428)
T d1vb3a1          83 PAPVANVES-------DVGCLELFHGPTLAFKDFGGRFMAQMLTHIAG--DKPVTILTATSGDTGAAVAHAFYGLPNVKV  153 (428)
T ss_dssp             CCCEEEEET-------TEEEEECCCSTTSBTHHHHHHHHHHHHHHHTT--TCCEEEEEECSSSHHHHHHHHTTTCTTEEE
T ss_pred             CccceeccC-------CceeeeeccCCCcccccchhhHHHHHHhhhcc--cccceeeecCCCCcchhHHHHHhCccccce
Confidence            567666543       69999999999999999999876554443322  2246799999999999998887766 6999


Q ss_pred             EEEeCC-CCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCC----CeEEeCCCCCCcchHhhHhhHHHHHHhh
Q 025113           96 IIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTP----DGYLLRQFENPANPKIHYETTGPEIWQD  170 (257)
Q Consensus        96 ~i~vp~-~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~t~~~Ei~~q  170 (257)
                      +|+.|+ .+++.++++|..+|++|+.+..+++||+|++.++++..+.+    ......-.-|+.. +.++.+.++|+..|
T Consensus       154 ~vl~P~g~vS~~Q~~Qmtt~g~nv~vi~V~G~fDDcq~lvk~~f~d~~~~~~~~l~s~NSIN~~R-l~~Q~vyyf~a~~q  232 (428)
T d1vb3a1         154 VILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISR-LLAQICYYFEAVAQ  232 (428)
T ss_dssp             EEEEETTCSCHHHHHHHHSCCTTEEEEEEESCHHHHHHHHHHGGGCHHHHHHHTEECCSTTSHHH-HHHTTHHHHHHHTT
T ss_pred             EEEecCCCCcHHHHHHHhhccCCceEEecCCChhHHHHHHHHHhhhhhhhhcCCeeeecccChhH-HhhhHHHHHHHHHH
Confidence            999997 58999999999999988766555679999999988865421    0111111123333 46899999999999


Q ss_pred             hCC---CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc-----C-----------------CCccccee
Q 025113          171 SGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN-----G-----------------GQRGLFIF  225 (257)
Q Consensus       171 l~~---~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~-----~-----------------~~~~~~~i  225 (257)
                      +..   .++.+++|+|++|.+.|.+.+.+.-.|--++|.....+. .+.     |                 +.|++++.
T Consensus       233 l~~~~~~~~~~~VPtGNfGni~Ag~~Ak~mGLPi~~~i~AtN~Nd-il~~f~~tG~y~~~~~~~TlSpAMDI~~pSNfER  311 (428)
T d1vb3a1         233 LPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVND-TVPRFLHDGQWSPKATQATLSNAMDVSQPNNWPR  311 (428)
T ss_dssp             SCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSCC-HHHHHHHHSCCCCCCCCCCSSGGGCCSSCTTHHH
T ss_pred             hccccCCceEEeccHHHHHHHHHHHHhhhcCCceeeeecccccCc-cchhhhhCCceecccccccCchHhhhcccCCHHH
Confidence            853   478999999999999998888777667667766655542 221     1                 23344422


Q ss_pred             c--------cccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113          226 I--------SYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC  257 (257)
Q Consensus       226 ~--------~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~  257 (257)
                      +        ..+......++|+|+..++..++++.++++|
T Consensus       312 l~~l~~~~~~~l~~~~~~~~dde~~~~i~~~~~~~gyi~D  351 (428)
T d1vb3a1         312 VEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSE  351 (428)
T ss_dssp             HHHHHHHTTCCGGGSEEEECCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHhhhhhhcccceeeccHHHHHHHHHHHHHcCceeC
Confidence            2        2233445667777777777778888899987

>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=7.6e-13  Score=119.90  Aligned_cols=190  Identities=15%  Similarity=0.044  Sum_probs=125.8

Q ss_pred             CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHH---HHHHc-C-C---CCCCceEEEEeCCChHHHHHHHHHH
Q 025113           18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIK---DAEDK-G-L---ITPGKTTLIEVTSGNTGVGLAFIAA   89 (257)
Q Consensus        18 TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~---~a~~~-g-~---~~~g~~~vv~~ssGN~~~alA~~a~   89 (257)
                      +||.++.   .+...++|+---++.||.+|||.++..+..   +..++ + .   -+.....|++++||.+|.|.+.+.+
T Consensus        96 ~pl~~~~---~~~~~~~~vlELfhGPT~aFKD~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~il~aTSGDTG~Aa~~af~  172 (511)
T d1kl7a_          96 TPLVQNV---TGDKENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGLR  172 (511)
T ss_dssp             SCEECCT---TCSSSCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHHHHHHHT
T ss_pred             Ccccccc---cCCCCceEEEeeccCCcccccCcchhhHHHHHHHHHHhcccccccccCceEEEEEecCCCccHHHHHHhc
Confidence            5665542   222347999999999999999998876654   22221 1 0   0112467999999999999888876


Q ss_pred             -HcCCcEEEEeCC-CCCHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHhCC--CeEEeCCCCCCcchHh------
Q 025113           90 -ARGYNLIIVMPS-TCSMERRIVLRALGA-EIILADSALRFEEILEKGEEILKKTP--DGYLLRQFENPANPKI------  158 (257)
Q Consensus        90 -~~g~~~~i~vp~-~~~~~~~~~l~~~Ga-~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------  158 (257)
                       .-+++++|+.|. .+++.+.++|...++ +|+.+..++++|+|++.++++..+..  ..+.+ ...|..||..      
T Consensus       173 ~~~~i~v~vlyP~~~vS~iQ~~Qmtt~~~~Nv~~i~v~G~fDDcq~~vk~~f~d~~~~~~~~l-~s~NSiNw~Rll~Qiv  251 (511)
T d1kl7a_         173 GKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSKHNV-GAVNSINWARILAQMT  251 (511)
T ss_dssp             TCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHHCSSCC--CCB-CCCCSCCHHHHHHHHH
T ss_pred             CCCCceeEEeccCCCCchHHHHHHhhcCCceEEEEEeccChHHHHHHHHHHHhhhhhhccccc-ccccceeehhhhhhHH
Confidence             458999999998 489999999988754 77777666789999999999887642  11222 2345555332      


Q ss_pred             hHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 025113          159 HYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE  211 (257)
Q Consensus       159 g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~  211 (257)
                      +|-.....+.....+++-.++||+|+-|.+.+-+.+-+.-.|--|+|+....+
T Consensus       252 yYf~ay~q~~~~~~~~~v~f~VPTGNfGni~Ag~~Ak~MGLPI~klivAtN~N  304 (511)
T d1kl7a_         252 YYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEN  304 (511)
T ss_dssp             HHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSC
T ss_pred             HHHHHHHHHhhhccCCeeEEEeccCcHHHHHHHHHHHhcCCChheEEEecCCc
Confidence            33333333333223355689999999666665554444334444777776655

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.074  Score=39.41  Aligned_cols=111  Identities=22%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEI  137 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~  137 (257)
                      ++.++..++||.+ |+....|.-|...+..++..|.+-++++.  ..+.|++..+.+||+......+.+..+..+.    
T Consensus        17 ~a~~~~~~~~gd~-VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~----   89 (171)
T d1pl8a2          17 HACRRGGVTLGHK-VLVCGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVLQISKESPQEIARK----   89 (171)
T ss_dssp             HHHHHHTCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEECSSCCHHHHHHH----
T ss_pred             HHHHHhCCCCCCE-EEEECCCccHHHHHHHHHHcCCceEEecc--CCHHHHHHHHHhCCccccccccccccccccc----
Confidence            4556667788866 44456799999999999999997666554  3577888899999988777654333222111    


Q ss_pred             HHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 025113          138 LKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGV  207 (257)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv  207 (257)
                                                   +....+..+|.+|-++|+-.++.   .+++...+.-+++-+
T Consensus        90 -----------------------------~~~~~g~g~Dvvid~~G~~~~~~---~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          90 -----------------------------VEGQLGCKPEVTIECTGAEASIQ---AGIYATRSGGTLVLV  127 (171)
T ss_dssp             -----------------------------HHHHHTSCCSEEEECSCCHHHHH---HHHHHSCTTCEEEEC
T ss_pred             -----------------------------ccccCCCCceEEEeccCCchhHH---HHHHHhcCCCEEEEE
Confidence                                         11123345788888888765443   334445555455444

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.13  E-value=0.029  Score=42.26  Aligned_cols=61  Identities=20%  Similarity=0.286  Sum_probs=51.5

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA  124 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~  124 (257)
                      +.+.++||++.+|.+.+|.-|.++...|+..|.+++.++.   ++.+.+.++.+|++.+....+
T Consensus        23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~---~~~~~~~~~~~Ga~~vi~~~~   83 (182)
T d1v3va2          23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAFNYKT   83 (182)
T ss_dssp             TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETTS
T ss_pred             HHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC---CHHHHHHHHhhhhhhhccccc
Confidence            4567888988888899999999999999999999888774   467899999999988766643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.081  Score=39.30  Aligned_cols=60  Identities=20%  Similarity=0.305  Sum_probs=47.1

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      .+.+.++||.+.+|.+.+|..|.+....|+..|.++++.+.   ++.+.+.++.+|++-+...
T Consensus        21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~---~~~~~~~~~~~Ga~~vi~~   80 (174)
T d1yb5a2          21 IHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVFNH   80 (174)
T ss_dssp             HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEET
T ss_pred             HHHhCCCCCCEEEEEeccccccccccccccccCcccccccc---cccccccccccCccccccc
Confidence            35667889887777777899999999999999999887774   3568888899999655433

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.032  Score=41.71  Aligned_cols=60  Identities=20%  Similarity=0.175  Sum_probs=47.1

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      .+.+.++||.+.+|.+.+|..|.++...|+..|.+++++..   ++.|++.++.+||+.+.-.
T Consensus        21 ~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~---s~~k~~~~~~lGa~~vi~~   80 (179)
T d1qora2          21 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQVINY   80 (179)
T ss_dssp             HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEET
T ss_pred             HHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeeccc---chHHHHHHHhcCCeEEEEC
Confidence            34567889887777788899999999999999998777554   4667788888898865543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.61  E-value=0.14  Score=37.60  Aligned_cols=111  Identities=20%  Similarity=0.133  Sum_probs=69.5

Q ss_pred             HHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH
Q 025113           59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEIL  138 (257)
Q Consensus        59 a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~  138 (257)
                      +.++..+++|.+.+|. .+|.-|...+..++.+|.+++++-   .++.|++.++.+|++...+.... ..+.        
T Consensus        18 a~~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~Ga~vi~v~---~~~~r~~~a~~~ga~~~~~~~~~-~~~~--------   84 (170)
T d1e3ja2          18 ACRRAGVQLGTTVLVI-GAGPIGLVSVLAAKAYGAFVVCTA---RSPRRLEVAKNCGADVTLVVDPA-KEEE--------   84 (170)
T ss_dssp             HHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEECCTT-TSCH--------
T ss_pred             HHHHhCCCCCCEEEEE-cccccchhhHhhHhhhcccccccc---hHHHHHHHHHHcCCcEEEecccc-cccc--------
Confidence            3444557888775554 689999999999999998766653   46778899999999776554210 0000        


Q ss_pred             HhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 025113          139 KKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGV  207 (257)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv  207 (257)
                                            ...-.++.+..+..+|.+|-++|+..++   -.+++...+.=+++-+
T Consensus        85 ----------------------~~~~~~~~~~~g~g~D~vid~~g~~~~~---~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          85 ----------------------SSIIERIRSAIGDLPNVTIDCSGNEKCI---TIGINITRTGGTLMLV  128 (170)
T ss_dssp             ----------------------HHHHHHHHHHSSSCCSEEEECSCCHHHH---HHHHHHSCTTCEEEEC
T ss_pred             ----------------------chhhhhhhcccccCCceeeecCCChHHH---HHHHHHHhcCCceEEE
Confidence                                  0111222223344689999998876543   3345555566555544

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.56  E-value=0.059  Score=39.70  Aligned_cols=60  Identities=20%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      .++..++||.+.+| ...|.-|...+..++..|.+++++   ..++.+++..+.+||+......
T Consensus        20 l~~~~~~~g~~VlV-~GaG~vG~~~~~~ak~~G~~Vi~~---~~~~~~~~~a~~~Ga~~~i~~~   79 (166)
T d1llua2          20 LKQTNARPGQWVAI-SGIGGLGHVAVQYARAMGLHVAAI---DIDDAKLELARKLGASLTVNAR   79 (166)
T ss_dssp             HHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEETT
T ss_pred             HHHhCCCCCCEEEE-eeccccHHHHHHHHHHcCCcccee---cchhhHHHhhhccCcccccccc
Confidence            33445678866555 567999999999999999876665   3457788899999997665543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.43  E-value=0.013  Score=44.75  Aligned_cols=62  Identities=24%  Similarity=0.262  Sum_probs=50.4

Q ss_pred             HcCCCCCCceEEEE-eCCChHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEEC
Q 025113           61 DKGLITPGKTTLIE-VTSGNTGVGLAFIAAARGYNLIIVMPST-CSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        61 ~~g~~~~g~~~vv~-~ssGN~~~alA~~a~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +.+.++||.+.+|. +.+|..|.+....|+.+|.++++++... ..+.+.+.++.+||+.+...
T Consensus        22 ~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~   85 (189)
T d1gu7a2          22 HYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITE   85 (189)
T ss_dssp             SSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred             HHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEec
Confidence            45678898776664 6789999999999999999999999764 34677888899999887765

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.024  Score=36.83  Aligned_cols=58  Identities=22%  Similarity=0.334  Sum_probs=45.1

Q ss_pred             HHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCC
Q 025113           56 IKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA  116 (257)
Q Consensus        56 ~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga  116 (257)
                      +....+.+..+++.+.+|...+|.-|....-.++.+|.+++.+...   +.|.+.++.+||
T Consensus        20 l~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s---~~k~~~~~~lGA   77 (77)
T d1o8ca2          20 VMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR---ESTHEYLKSLGA   77 (77)
T ss_dssp             HHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---GGGHHHHHHHTE
T ss_pred             HHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECC---HHHHHHHHHCCC
Confidence            4445566677777787888899999999999999999998887653   456777777775

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.10  E-value=0.11  Score=38.72  Aligned_cols=59  Identities=27%  Similarity=0.420  Sum_probs=46.9

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +.+.+++|.+.+|.+.+|..|.++.-.|+.+|.++++.+.   ++.+.+.++.+|++.+...
T Consensus        19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~---~~~~~~~l~~~Ga~~vi~~   77 (183)
T d1pqwa_          19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYVGDS   77 (183)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEEEET
T ss_pred             HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeec---ccccccccccccccccccC
Confidence            5567888877666677899999999999999999988774   3567888899998765443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.90  E-value=0.2  Score=37.26  Aligned_cols=60  Identities=27%  Similarity=0.313  Sum_probs=44.0

Q ss_pred             HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      +.+.+++|.+.+|. ..|..|......|+.+|.+-++++.  .++.+++.++.+||+.+....
T Consensus        22 ~~~~~~~G~~VlV~-GaG~iG~~~~~~ak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~~   81 (182)
T d1vj0a2          22 EYPESFAGKTVVIQ-GAGPLGLFGVVIARSLGAENVIVIA--GSPNRLKLAEEIGADLTLNRR   81 (182)
T ss_dssp             TCSSCCBTCEEEEE-CCSHHHHHHHHHHHHTTBSEEEEEE--SCHHHHHHHHHTTCSEEEETT
T ss_pred             HHhCCCCCCEEEEE-CCCccchhheecccccccccccccc--cccccccccccccceEEEecc
Confidence            55678888765555 5699999999999999985333332  267788899999997666554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.73  E-value=0.13  Score=37.76  Aligned_cols=63  Identities=25%  Similarity=0.220  Sum_probs=46.9

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      ++.++..++||.+.+|.+.+|..|...+..++..|...++++..  ++.+++.++.+|++.....
T Consensus        18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~--~~~~~~~~~~~Ga~~~i~~   80 (170)
T d1jvba2          18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV--REEAVEAAKRAGADYVINA   80 (170)
T ss_dssp             HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES--SHHHHHHHHHHTCSEEEET
T ss_pred             HHHHHhCCCCCCEEEEEeccccceeeeeeccccccccccccccc--chhhHHHHHHcCCceeecc
Confidence            34455667888776666668999999999999999766665554  4678888899999765544

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.55  E-value=0.25  Score=37.49  Aligned_cols=67  Identities=22%  Similarity=0.204  Sum_probs=49.7

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCH
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF  127 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~  127 (257)
                      ++.+...++||.+.+| ...|.-|...+..++..|...++++..  ++.|++..+.+|++.+....+.++
T Consensus        16 ~a~~~a~v~~G~tVlV-~GaG~vGl~a~~~ak~~ga~~Vi~~d~--~~~rl~~a~~~Ga~~~~~~~~~~~   82 (195)
T d1kola2          16 HGAVTAGVGPGSTVYV-AGAGPVGLAAAASARLLGAAVVIVGDL--NPARLAHAKAQGFEIADLSLDTPL   82 (195)
T ss_dssp             HHHHHTTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHTTCEEEETTSSSCH
T ss_pred             HHHHHhCCCCCCEEEE-ECcCHHHHHHHHHHHhhcccceeeecc--cchhhHhhhhccccEEEeCCCcCH
Confidence            3455567889876444 567999988888899999876766643  578999999999998765543333

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.52  E-value=0.19  Score=36.63  Aligned_cols=58  Identities=24%  Similarity=0.281  Sum_probs=44.3

Q ss_pred             CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 025113           63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA  124 (257)
Q Consensus        63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~  124 (257)
                      ..++||.+.+| ...|.-|...+..++..|.+++++   ..++.|++.++.+|++......+
T Consensus        23 ~~~~~g~~vlv-~G~G~iG~~a~~~a~~~g~~v~~~---~~~~~r~~~~k~~Ga~~~~~~~~   80 (168)
T d1rjwa2          23 TGAKPGEWVAI-YGIGGLGHVAVQYAKAMGLNVVAV---DIGDEKLELAKELGADLVVNPLK   80 (168)
T ss_dssp             HTCCTTCEEEE-ECCSTTHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCSEEECTTT
T ss_pred             hCCCCCCEEEE-eecccchhhhhHHHhcCCCeEecc---CCCHHHhhhhhhcCcceeccccc
Confidence            34678866555 466889999999999999986554   34678899999999987766644

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.32  E-value=0.061  Score=40.06  Aligned_cols=59  Identities=25%  Similarity=0.361  Sum_probs=45.7

Q ss_pred             HHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        59 a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      +.++..++||.+.+|.+.+|.-|.+....|+..|.++++++..   +.+.+.++.+|++...
T Consensus        19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~---~~~~~~~~~lGa~~~i   77 (171)
T d1iz0a2          19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR---PEKLALPLALGAEEAA   77 (171)
T ss_dssp             HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS---GGGSHHHHHTTCSEEE
T ss_pred             HHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccc---ccccccccccccceee
Confidence            4445678898776666778999999999999999988777643   4567788889997654

>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: PK C-terminal domain-like
family: MTH1675-like
domain: Hypothetical protein AF0103
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.67  E-value=0.25  Score=37.00  Aligned_cols=75  Identities=21%  Similarity=0.322  Sum_probs=56.7

Q ss_pred             CCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEe-------CC--CCCHHHHHHHH
Q 025113           42 EPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVM-------PS--TCSMERRIVLR  112 (257)
Q Consensus        42 ~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~v-------p~--~~~~~~~~~l~  112 (257)
                      +|.-.+=...+...+.+|.+.|-    ...||.+++|.+|..++-+.  .|+++++|.       |.  ..++..++.|+
T Consensus        11 ~~G~~NT~~~l~~a~~rA~Elgi----~~iVvAStsG~TA~~~~e~~--~g~~lvvVth~~GF~~pg~~e~~~e~~~~L~   84 (190)
T d1vp8a_          11 KPGRENTEETLRLAVERAKELGI----KHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELR   84 (190)
T ss_dssp             SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHcCC----CeEEEEeCCcHHHHHHHHHh--cCCeEEEEecccCCCCCCcccCCHHHHHHHH
Confidence            34445667788888999999884    34455667799998877665  388887776       22  35789999999


Q ss_pred             HCCCEEEEEC
Q 025113          113 ALGAEIILAD  122 (257)
Q Consensus       113 ~~Ga~v~~~~  122 (257)
                      ..|.+|+.-.
T Consensus        85 ~~G~~V~t~t   94 (190)
T d1vp8a_          85 KRGAKIVRQS   94 (190)
T ss_dssp             HTTCEEEECC
T ss_pred             HcCCEEEEec
Confidence            9999998765

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.51  E-value=0.46  Score=34.98  Aligned_cols=59  Identities=20%  Similarity=0.287  Sum_probs=44.9

Q ss_pred             HHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        59 a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      +...+.++||.+.+| ...|--|.+.+..|+.+|.+.+++...  ++.|++..+.+|+.-+.
T Consensus        20 ~~~~~~~~~g~~VlI-~G~G~iG~~~~~~ak~~g~~~v~~~~~--~~~k~~~a~~~Ga~~~i   78 (174)
T d1f8fa2          20 CINALKVTPASSFVT-WGAGAVGLSALLAAKVCGASIIIAVDI--VESRLELAKQLGATHVI   78 (174)
T ss_dssp             HHTTTCCCTTCEEEE-ESCSHHHHHHHHHHHHHTCSEEEEEES--CHHHHHHHHHHTCSEEE
T ss_pred             HHHhhCCCCCCEEEE-eCCCHHHhhhhhcccccccceeeeecc--HHHHHHHHHHcCCeEEE
Confidence            355667889876555 566999999999999999988777653  56788888888885443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.48  E-value=0.25  Score=36.66  Aligned_cols=62  Identities=23%  Similarity=0.132  Sum_probs=45.8

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      ++.+...++||.+.+| ...|--|...+..|+.+|.+-++++..  ++.|++..+.+||+-....
T Consensus        18 ~a~~~a~~~~g~~VlI-~GaG~vGl~~~q~ak~~Ga~~Vi~~d~--~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2          18 HGAELADIEMGSSVVV-IGIGAVGLMGIAGAKLRGAGRIIGVGS--RPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             HHHHHTTCCTTCCEEE-ECCSHHHHHHHHHHHTTTCSCEEEECC--CHHHHHHHHHHTCSEEECG
T ss_pred             HHHHHhCCCCCCEEEE-EcCCcchhhhhhhhhcccccccccccc--hhhhHHHHHhhCccccccc
Confidence            4556677889877555 567999999999999999865555543  5678888888998654433

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.11  Score=39.03  Aligned_cols=64  Identities=22%  Similarity=0.329  Sum_probs=47.4

Q ss_pred             HHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           56 IKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        56 ~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      +....+.+...++.+.+|.+.+|..|.+..-.|+.+|.+++.++..   +.|.+.++.+||+.+...
T Consensus        20 ~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~---~~k~~~~~~lGad~vi~~   83 (177)
T d1o89a2          20 VMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR---ESTHEYLKSLGASRVLPR   83 (177)
T ss_dssp             HHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---GGGHHHHHHHTEEEEEEG
T ss_pred             HHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecc---hhHHHHHHhhcccccccc
Confidence            3334555554444467788889999999999999999999987763   445677788999877654

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.81  E-value=0.19  Score=37.20  Aligned_cols=65  Identities=22%  Similarity=0.315  Sum_probs=50.0

Q ss_pred             HHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           53 YSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        53 ~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      +..+..+.+.|...++.+.+|.+.+|--|.+..-.|+.+|.+++..+...   .|.+.++.+|++.+.
T Consensus         9 ~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~---~k~~~~~~lGad~vi   73 (167)
T d1tt7a2           9 ALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR---EAADYLKQLGASEVI   73 (167)
T ss_dssp             HHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS---STHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCH---HHHHHHHhhcccceE
Confidence            33344456667766666778888899999999999999999999887653   366777888998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.60  E-value=0.21  Score=36.73  Aligned_cols=60  Identities=25%  Similarity=0.250  Sum_probs=43.6

Q ss_pred             HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113           58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA  121 (257)
Q Consensus        58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~  121 (257)
                      ++..+..++||.+.+| ...|..|...+..++.+|.+++++-..   +.|++..+.+||+....
T Consensus        18 ~al~~~~~~~g~~vlI-~GaG~vG~~a~q~ak~~G~~vi~~~~~---~~k~~~a~~lGa~~~i~   77 (168)
T d1piwa2          18 SPLVRNGCGPGKKVGI-VGLGGIGSMGTLISKAMGAETYVISRS---SRKREDAMKMGADHYIA   77 (168)
T ss_dssp             HHHHHTTCSTTCEEEE-ECCSHHHHHHHHHHHHHTCEEEEEESS---STTHHHHHHHTCSEEEE
T ss_pred             HHHHHhCcCCCCEEEE-ECCCCcchhHHHHhhhccccccccccc---hhHHHHhhccCCcEEee
Confidence            3444556788877555 556999999999999999987765443   34777888899875443

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.37  E-value=0.16  Score=38.08  Aligned_cols=68  Identities=28%  Similarity=0.338  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        52 a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      |+..+....+.|.+.+|.+.+|.+.+|.-|.+.--.|+.+|.+++......   .|.+.++.+|++.+...
T Consensus        16 A~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~---~k~~~~~~lGa~~vi~~   83 (176)
T d1xa0a2          16 AALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA---AEHDYLRVLGAKEVLAR   83 (176)
T ss_dssp             HHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT---TCHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCch---HHHHHHHhcccceeeec
Confidence            344445556678888888888888999999998889999999999877543   35677788999876643

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=0.36  Score=35.29  Aligned_cols=62  Identities=23%  Similarity=0.216  Sum_probs=45.6

Q ss_pred             HHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           57 KDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        57 ~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      ..+.++..++||.+.+|. ..|.-|...+..|+.+|.+.+++.+.   +.+++.++.+|++.....
T Consensus        20 y~al~~~~~~~G~~VlI~-GaG~vG~~a~qlak~~Ga~~i~~~~~---~~~~~~a~~lGad~~i~~   81 (168)
T d1uufa2          20 YSPLRHWQAGPGKKVGVV-GIGGLGHMGIKLAHAMGAHVVAFTTS---EAKREAAKALGADEVVNS   81 (168)
T ss_dssp             HHHHHHTTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEESS---GGGHHHHHHHTCSEEEET
T ss_pred             HHHHHHhCCCCCCEEEEe-ccchHHHHHHHHhhcccccchhhccc---hhHHHHHhccCCcEEEEC
Confidence            344556778999775554 56899999999999999988765543   335677888999876544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.86  E-value=0.89  Score=36.14  Aligned_cols=73  Identities=12%  Similarity=0.156  Sum_probs=45.4

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HH-HHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-ME-RRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~-~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      .+.||+.++|.-|.++|..-...|.++++.-..... .. ..+.....|.++..+..+. +.++..+......++.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence            467899999999999999988899888876654221 12 2233345677766655322 3344444444444544

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.75  E-value=1.1  Score=35.10  Aligned_cols=74  Identities=20%  Similarity=0.249  Sum_probs=47.7

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~  141 (257)
                      |...|||.+++.-|+++|......|.++++.-....  .....+..+.+|.+++.+..+ .+.++..+..++..++.
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            357789999999999999999999998777654321  122223346678887666543 23444555555555554

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=91.71  E-value=0.51  Score=36.88  Aligned_cols=61  Identities=26%  Similarity=0.265  Sum_probs=47.1

Q ss_pred             CCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC-----CCCHHHHHHHHHCCCEEEEECCC
Q 025113           64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS-----TCSMERRIVLRALGAEIILADSA  124 (257)
Q Consensus        64 ~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~-----~~~~~~~~~l~~~Ga~v~~~~~~  124 (257)
                      .++|+.+.+|+..+|--|+++|..-...|.+.++++..     ......++.++..|+++..+..+
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~D   70 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACD   70 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccc
Confidence            46788888999999999999999988899875555522     22345577788899999887654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.64  E-value=0.49  Score=35.28  Aligned_cols=65  Identities=18%  Similarity=0.219  Sum_probs=44.4

Q ss_pred             cCCCCCC--ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCH
Q 025113           62 KGLITPG--KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF  127 (257)
Q Consensus        62 ~g~~~~g--~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~  127 (257)
                      .+.+++|  .+.+|.+.+|.-|.+..-.|+.+|.+.++.+... ++.+.+..+.+|++.+.-..+.++
T Consensus        23 ~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~-~e~~~~l~~~~gad~vi~~~~~~~   89 (187)
T d1vj1a2          23 KGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT-QEKCLFLTSELGFDAAVNYKTGNV   89 (187)
T ss_dssp             HSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS-HHHHHHHHHHSCCSEEEETTSSCH
T ss_pred             HhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccch-HHHHhhhhhcccceEEeeccchhH
Confidence            3456666  4556666789999999999999999877765442 344444556789987776654333

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=1.4  Score=34.43  Aligned_cols=73  Identities=19%  Similarity=0.215  Sum_probs=44.6

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCC--CEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALG--AEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~G--a~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      ...+|+..++--|.++|....+.|.++++.-..... ....+.++..|  .+++.+..+- +-++..+..++..++.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            467889999999999999988899987665533111 22234455554  4666554322 2344445555555554

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.96  E-value=1.4  Score=31.97  Aligned_cols=66  Identities=21%  Similarity=0.260  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        52 a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      ++..+.++.  ..++||.. |+....|.-|...+..++.+|...++++..  ++.|++.++.+|++.....
T Consensus        19 a~~al~~~~--~~~~~g~~-vli~GaG~vG~~~~~~a~~~g~~~vv~~~~--~~~k~~~~~~~ga~~~i~~   84 (172)
T d1h2ba2          19 AYRAVKKAA--RTLYPGAY-VAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLKLAERLGADHVVDA   84 (172)
T ss_dssp             HHHHHHHHH--TTCCTTCE-EEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHHHHHHTTCSEEEET
T ss_pred             HHHHHHHhh--hccCCCCE-EEEeCCChHHHHHHHHHHhhcCcccccccc--hhHHHHHHhhcccceeecC
Confidence            344444433  23567765 555667999999999999999877666643  4678889999998765544

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.79  E-value=1.7  Score=33.99  Aligned_cols=74  Identities=18%  Similarity=0.211  Sum_probs=50.6

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~  141 (257)
                      |...|||.+++.-|+++|......|.++++.-.... -....+.++..|.+++.+..+ .+.++..+..++..++.
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            457789999999999999999999998776543321 123345677788888776643 23455555566665655

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.08  E-value=2.2  Score=33.22  Aligned_cols=74  Identities=16%  Similarity=0.280  Sum_probs=47.9

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS---MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~---~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      |...+||..++.-|+++|......|.++++.-..+..   ....+.....|.++..+..+- +.++..+..++..++.
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4467888999999999999999999987665543321   111222345688888776532 3455555556655554

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.65  E-value=0.32  Score=33.48  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=32.6

Q ss_pred             CCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC
Q 025113           66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC  103 (257)
Q Consensus        66 ~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~  103 (257)
                      .|+..+|..-.+|..|+-+|.+|+.+|++++++-|...
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            45556788888999999999999999999999988743

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=88.93  E-value=1.2  Score=34.89  Aligned_cols=74  Identities=16%  Similarity=0.041  Sum_probs=54.0

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~  141 (257)
                      |++.+|+.+++.-|.++|......|.+++++-..... ....+.++..|.+++.+..+ .+.++..+..++..++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999998887654322 34566788899988766543 23455556666666665

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=88.75  E-value=2.5  Score=32.95  Aligned_cols=74  Identities=18%  Similarity=0.105  Sum_probs=46.8

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHH--HCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLR--ALGAEIILADSA-LRFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~--~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~  141 (257)
                      |...||+.+++.-|+++|......|.++++.-..... ......+.  ..+.+++.+..+ .+.++..+..++..++.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            3477899999999999999999999987765543211 11122222  246677766543 24555656666666655

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.42  E-value=1.3  Score=32.57  Aligned_cols=60  Identities=25%  Similarity=0.236  Sum_probs=46.9

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      .+...++||.+ |+....|--|...+..++.+|.+.+++...  ++.|++..+.+|++.+...
T Consensus        21 ~~~a~v~~G~~-VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~--~~~r~~~a~~~Ga~~~i~~   80 (174)
T d1e3ia2          21 INTAKVTPGST-CAVFGLGCVGLSAIIGCKIAGASRIIAIDI--NGEKFPKAKALGATDCLNP   80 (174)
T ss_dssp             HTTSCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEECG
T ss_pred             HHhhCCCCCCE-EEEECCChHHHHHHHHHHHhCCceeeeecc--chHHHHHHHHhCCCcccCC
Confidence            45678899876 555578999999999999999987777765  3457888899999776543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=87.91  E-value=2  Score=31.38  Aligned_cols=59  Identities=24%  Similarity=0.222  Sum_probs=45.6

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA  121 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~  121 (257)
                      .+.+.++||.+.+ ....|--|......|+.+|...++.+..  ++.|++..+.+||+-...
T Consensus        20 ~~~a~~~~G~~Vl-V~GaGgvGl~a~~~ak~~G~~~Vi~~d~--~~~kl~~a~~lGa~~~i~   78 (174)
T d1p0fa2          20 VNTAKVTPGSTCA-VFGLGGVGFSAIVGCKAAGASRIIGVGT--HKDKFPKAIELGATECLN   78 (174)
T ss_dssp             HTTTCCCTTCEEE-EECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred             HHhhCCCCCCEEE-EECCCchhHHHHHHHHHcCCceeeccCC--hHHHHHHHHHcCCcEEEc
Confidence            4567789997644 4467899999999999999887777765  466788888899887653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=87.55  E-value=3.1  Score=32.46  Aligned_cols=33  Identities=21%  Similarity=0.223  Sum_probs=27.0

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP  100 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp  100 (257)
                      |...||+.+++--|+++|......|.++++.-.
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r   38 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADI   38 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence            357788999999999999998888988766543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=87.43  E-value=1.7  Score=33.88  Aligned_cols=74  Identities=14%  Similarity=0.103  Sum_probs=52.6

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhCC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKTP  142 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~~  142 (257)
                      +..|||.+++.-|+++|...+..|.++++.-.... -....+.++..|.+++.+..+ .+.++..+..++..++.+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            35689999999999999999999999777654311 233456678889888776643 245566666677767663

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.04  E-value=1.7  Score=33.84  Aligned_cols=74  Identities=20%  Similarity=0.282  Sum_probs=54.8

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      |+..+|+.+++--|.++|......|.++++....+..  ....+.++.+|.+++.+..+- +.+++.+..++..++.
T Consensus         6 GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            4577888999999999999999999999887665433  344677888999998776543 3555666666666665

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=86.73  E-value=3.1  Score=32.07  Aligned_cols=73  Identities=16%  Similarity=0.207  Sum_probs=53.0

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~  141 (257)
                      |...|||.+++.-|+++|......|.++++.-.. ..+.....++.+|.+++.+..+ .+.++..+..++..++.
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~-~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~   78 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLV-PAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF   78 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-CCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-chHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            3577899999999999999999999987776543 3455666788899988777653 23455555566665554

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=86.59  E-value=1.5  Score=31.79  Aligned_cols=58  Identities=16%  Similarity=0.224  Sum_probs=42.9

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL  120 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~  120 (257)
                      .+++.++||.+.+|.. .|-.|......++.+|.+.++.+..  ++.|++..+.+||+-..
T Consensus        21 ~~~~~~~~G~tVlI~G-aGGvG~~aiq~ak~~G~~~vi~~~~--~~~k~~~ak~lGa~~~i   78 (176)
T d2fzwa2          21 VNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDI--NKDKFARAKEFGATECI   78 (176)
T ss_dssp             HTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHHTCSEEE
T ss_pred             HHhhCCCCCCEEEEec-chhHHHHHHHHHHHHhcCceEEEcc--cHHHHHHHHHhCCcEEE
Confidence            4567889997755554 4667888888899999888877754  55677788889986654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.47  E-value=3.7  Score=31.79  Aligned_cols=71  Identities=10%  Similarity=0.129  Sum_probs=42.6

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHH-HHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERR-IVLRALGAEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~-~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      |...|||.+++--|+++|......|.++++.- .  +..+. +..+.+|.+.+.+..+- +.++..+..++..++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~-~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~   78 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSD-I--NEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEC-S--CHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE-C--CHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence            34778888899999999998888888865543 2  22332 23345576666665432 2344444444444443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.56  E-value=2.4  Score=32.82  Aligned_cols=75  Identities=17%  Similarity=0.113  Sum_probs=52.4

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhCC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKTP  142 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~~  142 (257)
                      |...+||..++--|+++|..-...|.++++.-.... -....+.++..|.+++.+..+ .+.++..+..++..++.+
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            457788999999999999999999999888655422 123455677888887766543 245555556666656653

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=85.42  E-value=2.2  Score=33.40  Aligned_cols=73  Identities=15%  Similarity=0.166  Sum_probs=52.6

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      ...|||.+++.-|+++|......|.++++.-....  .....+.++.+|.+++.+..+- +.++..+..++..++.
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            47788889999999999999999999887765432  2345667888999988776542 3455555556655554

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.20  E-value=1.3  Score=34.64  Aligned_cols=74  Identities=15%  Similarity=0.186  Sum_probs=51.6

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      |...|||.+++--|+++|......|.++++.-.... -....+.++..|.+++.+..+- +.+++.+..++..++.
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            347788999999999999999999999877654321 1334566788898887776532 3455555566665554

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.12  E-value=2.7  Score=32.51  Aligned_cols=74  Identities=11%  Similarity=0.146  Sum_probs=43.7

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHH--CCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRA--LGAEIILADSA-LRFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~--~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~  141 (257)
                      |...+||.+++--|+++|......|.++++.-..... ......++.  .+.++..+..+ .+.++..+..++..++.
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            4577899999999999999999999887765443211 112222322  24555554432 23444555555555554

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.11  E-value=0.44  Score=30.59  Aligned_cols=48  Identities=15%  Similarity=0.084  Sum_probs=36.4

Q ss_pred             EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113           71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS  123 (257)
Q Consensus        71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~  123 (257)
                      +|..-.+|..|+-++.+|+.+|++++++-|...++.-.     .-.+++..+-
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~~-----~a~dvIT~e~   50 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVP-----FQQSVITAEI   50 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGGGSC-----GGGSEEEESS
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCcccc-----cccceEEEee
Confidence            46677899999999999999999999999975443211     1236776664

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.91  E-value=1.9  Score=33.71  Aligned_cols=74  Identities=20%  Similarity=0.251  Sum_probs=53.5

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~  141 (257)
                      |.+.||+..++.-|+++|......|.++++.-....+  ....+.++..|.+++.+..+ .+.+++.+..++..++.
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   94 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF   94 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence            3577889999999999999999999998877654322  33466678889988877643 24555666666665554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.72  E-value=2.2  Score=31.18  Aligned_cols=60  Identities=20%  Similarity=0.272  Sum_probs=44.3

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD  122 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~  122 (257)
                      .+.+.+++|.+ |+....|--|.....+|+.+|..-+|.+..  ++.|++..+.+||+...-.
T Consensus        22 ~~~~~~~~g~t-VlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~--~~~kl~~Ak~~GA~~~in~   81 (176)
T d1d1ta2          22 VKTGKVKPGST-CVVFGLGGVGLSVIMGCKSAGASRIIGIDL--NKDKFEKAMAVGATECISP   81 (176)
T ss_dssp             HTTSCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHHTCSEEECG
T ss_pred             HHhhCCCCCCE-EEEECCCchhHHHHHHHHHcCCceEEEecC--cHHHHHHHHhcCCcEEECc
Confidence            45677888866 555667999999999999999876666654  3457778888888765543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=84.30  E-value=3.9  Score=31.33  Aligned_cols=72  Identities=22%  Similarity=0.148  Sum_probs=50.7

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      |.+.||+..++.-|.++|......|.++++.-...  ....+..+.+|.+++.+..+- +.++..+..++..++.
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREE--RLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35778999999999999999999999998765432  333455677898887776432 3445555556655544

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.16  E-value=5.4  Score=30.77  Aligned_cols=75  Identities=15%  Similarity=0.168  Sum_probs=52.6

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHH--HHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhCC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSME--RRIVLRALGAEIILADSAL-RFEEILEKGEEILKKTP  142 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~--~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~~  142 (257)
                      |++.+||.+++.-|+++|..-...|.++++.-.......  ..+..+.+|.++..+..+- +.++..+..++..++.+
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            346788999999999999999999999888776544322  2334466788887776532 34555666677767663

>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: PK C-terminal domain-like
family: MTH1675-like
domain: Hypothetical protein MTH1675
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.69  E-value=1.6  Score=32.40  Aligned_cols=75  Identities=20%  Similarity=0.268  Sum_probs=51.9

Q ss_pred             CCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEe-------CC--CCCHHHHHHHH
Q 025113           42 EPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVM-------PS--TCSMERRIVLR  112 (257)
Q Consensus        42 ~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~v-------p~--~~~~~~~~~l~  112 (257)
                      +|.-.+=+..+...+.+|.+.|-    ...||.+++|.+|..++-+.   .-++++|.       |.  ..++..++.|+
T Consensus        10 ~~G~~NT~~~l~~a~~ra~elgi----~~iVvAStsG~TA~~~~e~~---~~~lvvVth~~GF~~pg~~e~~~e~~~~L~   82 (186)
T d1t57a_          10 EPGKENTERVLELVGERADQLGI----RNFVVASVSGETALRLSEMV---EGNIVSVTHHAGFREKGQLELEDEARDALL   82 (186)
T ss_dssp             SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHTTC---CSEEEEECCCTTSSSTTCCSSCHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHcCC----CeEEEEeCCcHHHHHHHHhc---CCCEEEEecccCCCCCCCCccCHHHHHHHH
Confidence            34445667788888999999884    34455667799987764433   33554444       21  24788999999


Q ss_pred             HCCCEEEEECC
Q 025113          113 ALGAEIILADS  123 (257)
Q Consensus       113 ~~Ga~v~~~~~  123 (257)
                      ..|.+|+.-.-
T Consensus        83 ~~G~~V~t~tH   93 (186)
T d1t57a_          83 ERGVNVYAGSH   93 (186)
T ss_dssp             HHTCEEECCSC
T ss_pred             HcCCEEEEecc
Confidence            99999987663

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.58  E-value=4  Score=31.63  Aligned_cols=74  Identities=18%  Similarity=0.086  Sum_probs=51.6

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      |...|||..++--|+++|......|.++++.-.... -....+.++..|.+++.+..+- +.++..+..++..++.
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            457889999999999999999999998777654311 1234566778888887766432 3455555566666654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.25  E-value=3.2  Score=32.11  Aligned_cols=73  Identities=11%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhCC
Q 025113           70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKTP  142 (257)
Q Consensus        70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~~  142 (257)
                      ..|||.+++.-|+++|......|.++++.-.... -....+.++..|.+++.+..+ .+.++..+..++..++.+
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            3578999999999999999999999877654321 123456678889988777643 245566666677766663

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=83.09  E-value=3.6  Score=29.49  Aligned_cols=59  Identities=17%  Similarity=0.225  Sum_probs=39.6

Q ss_pred             HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113           60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA  121 (257)
Q Consensus        60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~  121 (257)
                      .+.+.++||.+.+|.. .|--|...+..++.+|-..++.+..  .+.|++.++.+||+-..-
T Consensus        21 ~~~a~~k~g~~VlI~G-~Gg~g~~~~~~~~~~g~~~Vi~~~~--~~~rl~~a~~~GAd~~in   79 (175)
T d1cdoa2          21 VNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVDL--NPDKFEKAKVFGATDFVN   79 (175)
T ss_dssp             HTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCCEEEC
T ss_pred             HHhhCCCCCCEEEEEe-cCCccchHHHHHHHHhhchheeecc--hHHHHHHHHHcCCcEEEc
Confidence            3567788987755554 5556666666677787776666644  355778888899866553

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=82.48  E-value=4.8  Score=31.00  Aligned_cols=70  Identities=20%  Similarity=0.142  Sum_probs=51.8

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~  141 (257)
                      |...+||.+++.-|+++|..-...|.++++.-... +  +.+..+..+++.+.++-. +.++..+..++..++.
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~-~--~~~~~~~~~~~~~~~Dv~-~~~~v~~~~~~~~~~~   74 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP-E--GKEVAEAIGGAFFQVDLE-DERERVRFVEEAAYAL   74 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-T--HHHHHHHHTCEEEECCTT-CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-H--HHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHhc
Confidence            45778999999999999999999999877655432 2  345567778998888763 4666666666666665

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=82.01  E-value=9.1  Score=29.34  Aligned_cols=74  Identities=12%  Similarity=0.126  Sum_probs=45.5

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH--CCCEEEEECCCC--CHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA--LGAEIILADSAL--RFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~--~Ga~v~~~~~~~--~~~~~~~~~~~~~~~~  141 (257)
                      |...+||.+++--|.++|..-...|.+++++............++.  .+.++.....+.  +.++..+..++..++.
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            3577889899889999999989999999888766544444444332  233554444321  2333444444444443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.63  E-value=2.8  Score=32.45  Aligned_cols=73  Identities=19%  Similarity=0.134  Sum_probs=51.0

Q ss_pred             ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113           69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT  141 (257)
Q Consensus        69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~  141 (257)
                      ...+|+.+++--|+++|..-...|.++++.-.... -....+.++.+|.++..+..+- +.++..+..++..++.
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   85 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH   85 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            46788999999999999998899998777654321 1234556778898887776532 3455556666666665

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=81.13  E-value=3.5  Score=31.74  Aligned_cols=73  Identities=11%  Similarity=0.159  Sum_probs=51.9

Q ss_pred             eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhCC
Q 025113           70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKTP  142 (257)
Q Consensus        70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~~  142 (257)
                      ..+||.+++.-|+++|..-...|.++++....+.  .....+.++.+|.+++.+..+- +.++..+..++..++.+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            4578888899999999999999999887654432  2334567788899998776542 34555556666666653

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=80.95  E-value=6.6  Score=29.37  Aligned_cols=67  Identities=25%  Similarity=0.290  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHH-cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113           50 RIAYSMIKDAED-KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII  119 (257)
Q Consensus        50 R~a~~~~~~a~~-~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~  119 (257)
                      +|..+.+..+.+ .|.-.-...+|+.-..||.|..+|......|.++++.   +.+..++.....+|++.+
T Consensus         7 ~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~---d~d~~~~~~~~~~g~~~~   74 (201)
T d1c1da1           7 VGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVA---DTDTERVAHAVALGHTAV   74 (201)
T ss_dssp             HHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCEEC
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEe---cchHHHHHHHHhhccccc
Confidence            566666765543 3321112356888899999999999999999887753   345566666777777654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.15  E-value=4.7  Score=31.08  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=47.4

Q ss_pred             CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113           68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT  141 (257)
Q Consensus        68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~  141 (257)
                      |...||+.+++.-|+++|......|.++++.-   .+..+++.+...+.++..+..+ .+.++..+..++..++.
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~---r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICD---KDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhc
Confidence            45778999999999999999999999877753   2345555555443444443322 34566666666666654