Citrus Sinensis ID: 025141

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFFC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEccccccEEEEEEcccccEEEEEcccEEEEcccccHHHHHcccccccccccccEEEEEccccHHHHHHHHccccccEEEEEEccHHHHHHHHHccHHHccccccccEEEEEcHHHHHHHHccccccEEEEccccccccccccccccHHHHHHHHHcccccccEEEEccccccccccHHHHHHHHHHHHccccccEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccccccccccccccEEEEcccccEEEEEEccEEEEEEEccccEEEEEEEcccEEEEEEccEEEEEcccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHccccccEEEEEEccHHHHHHHHHHcHHHHcccccccEEEEEccHHHHHccccccEEEEEEccccHHHHccHHHHHcHHHHHHHHHHHcccccEEEEccccccHHHcHHHHHHHHHHHHHHcccEEEEEEEcccccc
Coil and Loop (DISEMBL)
mgeiscsngisqangadaknvaltgyrkscwyEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDgklqsaevdefiyheslvhpallhhpnpktifimgggegsTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVnkeafsdprleLVINDARAELESRKESYDVIigdladpieggpcyklytKSFYEFvvkprlnpegifvtqagpagifshTEVFSCIYNTLRQVFkcgccalfssysffc
Flexible Loop (DISEMBL)
mgeiscsngisqangadaknvaLTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVnkeafsdprlelVINDARAelesrkesydvIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFFC
Low Complexity Region (SEG)
MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFFC
Disordered region (IsUnstruct)
******************KNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFF*
Disordered Region (DISOPRED)
****************************SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFFC
Disordered Region (DISEMBL)
MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFFC
Disordered Region (DISPRO)
*GEI***NGIS*********VALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFFC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFFC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q9S7X6	339	Thermospermine synthase A	yes	no	0.937	0.710	0.669	2e-98
Q9YE02	314	Probable spermidine synth	yes	no	0.863	0.707	0.441	8e-49
Q5SK28	314	Spermidine synthase OS=Th	yes	no	0.762	0.624	0.49	1e-48
Q72K55	314	Spermidine synthase OS=Th	yes	no	0.762	0.624	0.49	1e-48
Q975S5	300	Probable spermidine synth	yes	no	0.778	0.666	0.456	2e-44
Q2JQS1	312	Spermidine synthase OS=Sy	yes	no	0.758	0.625	0.437	1e-43
Q2JQ57	312	Spermidine synthase OS=Sy	yes	no	0.844	0.695	0.404	2e-43
Q9HV34	349	Spermidine synthase 2 OS=	yes	no	0.824	0.607	0.400	4e-43
B6YXJ9	282	Probable spermidine synth	yes	no	0.758	0.691	0.43	1e-41
B0K172	277	Spermidine synthase OS=Th	yes	no	0.797	0.740	0.415	2e-41

>sp|Q9S7X6|ACL5_ARATH Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1

 Score =  358 bits (920), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 162/242 (66%), Positives = 202/242 (83%), Gaps = 1/242 (0%)

Query: 3   EISCSNGISQANGADAKNVALTGYRKSC-WYEEEIEENLRWSFALNSILHTGETRYQDIA 61
           E+   NG  + + A +    L   ++ C WYEE I+++L+WSFALNS+LH G + YQDIA
Sbjct: 6   EVMFGNGFPEIHKATSPTQTLHSNQQDCHWYEETIDDDLKWSFALNSVLHQGTSEYQDIA 65

Query: 62  LLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREIL 121
           LLDTK FGK LVIDGK+QSAE DEFIYHE L+HPALL HPNPKT+FIMGGGEGS AREIL
Sbjct: 66  LLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNPKTVFIMGGGEGSAAREIL 125

Query: 122 RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181
           +H T+EKVVMCDID+EVV+FC+ +L VN +AF + +LELVI DA+AELE R+E +D+I+G
Sbjct: 126 KHTTIEKVVMCDIDQEVVDFCRRFLTVNSDAFCNKKLELVIKDAKAELEKREEKFDIIVG 185

Query: 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241
           DLADP+EGGPCY+LYTKSFY+ ++KP+L+P GIFVTQAGPAGIF+H EVF+ IYNT++QV
Sbjct: 186 DLADPVEGGPCYQLYTKSFYQNILKPKLSPNGIFVTQAGPAGIFTHKEVFTSIYNTMKQV 245

Query: 242 FK 243
           FK
Sbjct: 246 FK 247

Required for correct xylem specification through regulation of the lifetime of the xylem elements. Prevents premature death of the xylem vessel elements.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 9

>sp|Q9YE02|SPEE_AERPE Probable spermidine synthase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=speE PE=3 SV=2

 Score =  193 bits (491), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 151/231 (65%), Gaps = 9/231 (3%)

Query: 15  GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVI 74
           G   K+V L    K  W+ E +  +      +  ++  G +R+Q+IA++     GK LV+
Sbjct: 3   GGSEKSVFL----KWSWFLEWLTPDRATLKHIEDVIFQGRSRFQEIAVVRVSGEGKVLVL 58

Query: 75  DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI 134
           DGK QS+E DEF+YHE+LVHPA++ H +P+ + I+GGGEG+T RE+L+H++VEK VM DI
Sbjct: 59  DGKTQSSESDEFMYHEALVHPAMILHGSPRKVLILGGGEGATLREVLKHRSVEKAVMVDI 118

Query: 135 DEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKES-YDVIIGDLADPIEGGPC 192
           DE VV   + +L   ++ AF DPR E+VI+DA   + S+ E+ +DV+I DL DP+E GP 
Sbjct: 119 DETVVNVAREHLREWHRGAFDDPRAEVVIDDAWNYVASKAETGFDVVIADLVDPLEAGPA 178

Query: 193 YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
            +LY++ +Y  +VK  +NP G+FVTQA    I   TE  + I NT+ +VFK
Sbjct: 179 TRLYSEEYYR-MVKDVMNPGGVFVTQA--VSISHLTEYHAIIRNTVARVFK 226

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q5SK28|SPEE_THET8 Spermidine synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=speE PE=1 SV=1

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 98/200 (49%), Positives = 135/200 (67%), Gaps = 4/200 (2%)

Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
           +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE+LVHPA+L HP PK 
Sbjct: 21  MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80

Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIND 164
           + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   ++ AF DPR  LVI+D
Sbjct: 81  VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140

Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           ARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  LNP G+   QAG   
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQAG-MI 198

Query: 224 IFSHTEVFSCIYNTLRQVFK 243
           + +H  V   ++ T+R+ F+
Sbjct: 199 LLTHHRVHPVVHRTVREAFR 218

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Has broad substrate specificity. Is also active with agmatine and norspermidine. Has lower activity with homospermidine, mitsubishine and thermine.

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q72K55|SPEE_THET2 Spermidine synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=speE PE=3 SV=1

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 98/200 (49%), Positives = 135/200 (67%), Gaps = 4/200 (2%)

Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
           +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE+LVHPA+L HP PK 
Sbjct: 21  MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80

Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIND 164
           + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   ++ AF DPR  LVI+D
Sbjct: 81  VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140

Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           ARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  LNP G+   QAG   
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQAG-MI 198

Query: 224 IFSHTEVFSCIYNTLRQVFK 243
           + +H  V   ++ T+R+ F+
Sbjct: 199 LLTHHRVHPVVHRTVREAFR 218

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q975S5|SPEE_SULTO Probable spermidine synthase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=speE PE=3 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 130/206 (63%), Gaps = 6/206 (2%)

Query: 45  ALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPK 104
           A+  ++   +T YQ   L++   FGKAL++DGK+QS   DEFIYHE+LVHP LL   NP+
Sbjct: 20  AITKVIAEEKTPYQRALLVELARFGKALILDGKIQSTITDEFIYHEALVHPLLLSINNPE 79

Query: 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIN 163
            I I+GGGEG+T RE+L+HKT++ V M DID  V++F K YL   ++ AF +P+ +LVI 
Sbjct: 80  KILILGGGEGATLREVLKHKTIKNVTMVDIDPVVIDFAKKYLQEWHQGAFDNPKSKLVIE 139

Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           D    ++  KE +D ++ DL DPI+  P   LYTK FYE V   R++  GI      P+ 
Sbjct: 140 DGYKFIKETKEKFDAVVIDLTDPIKDSPSQMLYTKEFYEEV--KRISKWGIVTQATSPS- 196

Query: 224 IFSHTEVFSCIYNTLRQVFKCGCCAL 249
            FS  E FS IYNT++ VFK     +
Sbjct: 197 -FS-LETFSIIYNTIKHVFKKVSAGI 220

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (taxid: 273063)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q2JQS1|SPEE_SYNJA Spermidine synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=speE PE=3 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/208 (43%), Positives = 135/208 (64%), Gaps = 13/208 (6%)

Query: 45  ALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN-- 102
           A+  IL   +TR+Q++ + +T  +GK L++DG  QS   DEF+YHE+LVHPAL+      
Sbjct: 23  AITRILAYRKTRFQEMLIAETGAYGKGLMLDGHWQSTTADEFLYHEALVHPALVQVVQAG 82

Query: 103 --PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLE 159
             P+ + I+GG EG+T RE+LR ++VE+VVM DID EVVE C+ +L  +++ +F+DPR E
Sbjct: 83  GIPRRVLILGGAEGATLREVLRWRSVEQVVMVDIDGEVVEACREHLPEMHQGSFADPRAE 142

Query: 160 LVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
           +VI DA   L   +  +D I+ DL+DP+E GP Y+L+T+ F+   V+ +L   G FV QA
Sbjct: 143 VVIADALDFLGQTEPIWDAILSDLSDPVEAGPAYRLFTQEFFR-QVRSKLQTAGAFVIQA 201

Query: 220 GPAG---IFSHTEVFSCIYNTLRQVFKC 244
           GP G   ++ HT     I +TL+ VF  
Sbjct: 202 GPTGPVELWQHTR----IVHTLKTVFAA 225

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q2JQ57|SPEE_SYNJB Spermidine synthase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=speE PE=3 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/230 (40%), Positives = 141/230 (61%), Gaps = 13/230 (5%)

Query: 23  LTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAE 82
           ++  R   W +E        + A+  IL   +T +Q++ + +T  FGK L++DG  QS  
Sbjct: 1   MSSPRSFFWVQEYFTPWDYTARAVTRILAYRKTPFQEMLIAETGAFGKGLMLDGHWQSTT 60

Query: 83  VDEFIYHESLVHPALLHHPN----PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEV 138
           VDEF+YHE+LVHPA++        P+ + ++GG EG+T RE+LR ++VE+VVM DID EV
Sbjct: 61  VDEFLYHEALVHPAMVQVVQAGGIPRRVLVLGGAEGATLREVLRWRSVEQVVMVDIDGEV 120

Query: 139 VEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYT 197
           V  C+ +L  +++ +F DPR+E+VI DA   L+     +DVI+ DL+DPIE GP Y+L+T
Sbjct: 121 VAACREHLPEMHQGSFEDPRVEVVIADALDFLQETGPIWDVILSDLSDPIESGPAYRLFT 180

Query: 198 KSFYEFVVKPRLNPEGIFVTQAGPAG---IFSHTEVFSCIYNTLRQVFKC 244
           + F+   ++ +L P+G F  QAGP G   +  HT     I  TL+ VF  
Sbjct: 181 QEFFR-QIRSKLQPDGAFTIQAGPTGPVELHQHTR----IVRTLKTVFAA 225

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9HV34|SPEE2_PSEAE Spermidine synthase 2 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=speE2 PE=3 SV=1

 Score =  174 bits (442), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 137/227 (60%), Gaps = 15/227 (6%)

Query: 41  RWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHH 100
           ++ + L  +L+ G TR+Q++ + DT  + + L++DG +QSAE DE +YHE LV PA+L H
Sbjct: 43  QYVYRLRRVLYQGRTRWQNVLIADTYNYDRVLMLDGAIQSAESDESLYHELLVQPAMLAH 102

Query: 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLE 159
             P+ + I+GGGEG+T RE+L H +V + VM D+D E+VE C+ +L   ++ AF DPR E
Sbjct: 103 DEPRDVLIIGGGEGATLREVLSHASVRRAVMVDLDRELVELCREHLFQWHQGAFDDPRCE 162

Query: 160 LVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
           L+  D RA LE     YDV+I D+ D ++ GP   LYT+ FYE ++  RL P G+   Q 
Sbjct: 163 LLAEDGRAYLERDPSLYDVVIIDVVDMLDNGPAQALYTRQFYE-LLHSRLRPGGVVAVQ- 220

Query: 220 GPAGI-FSHTE--VFSCIYNTLRQVF------KCGCCALFSSYSFFC 257
              G+ FSH++    + +  TLR VF      +    +  SS+ F  
Sbjct: 221 ---GLEFSHSDDKPHAALARTLRSVFSQVHSYRATVPSFLSSWGFLL 264

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|B6YXJ9|SPEE_THEON Probable spermidine synthase OS=Thermococcus onnurineus (strain NA1) GN=speE PE=3 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 129/200 (64%), Gaps = 5/200 (2%)

Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
            F +   L   +T+YQ + L +T+ FGK LV+DG +Q  E+ E  YHE LVHP +L HPN
Sbjct: 21  GFRVKERLFETQTKYQRLELYETEGFGKLLVLDGTVQLVEMGEESYHEPLVHPVMLAHPN 80

Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
           P+ + I+GGG+G T RE+LRHKTVEK +M +IDE V+E  + Y+ V + AF DPR EL++
Sbjct: 81  PRRVLIIGGGDGGTLREVLRHKTVEKAIMVEIDEMVIEVSRIYMNVARGAFEDPRAELIV 140

Query: 163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222
           +D    L++  E +DVII D  DP+  GP   L+++ F+    + +LN  G+++TQAG  
Sbjct: 141 SDGVEYLKNTDEKFDVIIVDSTDPV--GPAKMLFSEGFFRNAYE-KLNDNGLYITQAGSV 197

Query: 223 GIFSHTEVFSCIYNTLRQVF 242
            +F++ E+    Y  + +VF
Sbjct: 198 YLFTN-ELLDA-YRDMGKVF 215

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|B0K172|SPEE_THEPX Spermidine synthase OS=Thermoanaerobacter sp. (strain X514) GN=speE PE=3 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/214 (41%), Positives = 127/214 (59%), Gaps = 9/214 (4%)

Query: 30  CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYH 89
            W+ E  +ENLR+S  +   L   +T YQ +A+LDT  FG+ L +DG LQ+ E DEF+YH
Sbjct: 3   LWFTENQDENLRFSLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYH 62

Query: 90  ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149
           E +VH  L  H NPK++ I+GGG+G + RE+L+H +VE+VV+ +IDE VV   K YL   
Sbjct: 63  EMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKYLPTI 122

Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
            +A  DPR+E++I D    +   K  +DV+I D  DPI  GP   L+T  FY+ V +  L
Sbjct: 123 SQALDDPRVEIMIGDGIKYVNEHKNEFDVVIVDSTDPI--GPAVGLFTSDFYKAVYE-CL 179

Query: 210 NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
             +GI V Q     I+        + N L ++FK
Sbjct: 180 KEDGIIVAQTESPFIYGK------LINKLSKMFK 207

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Thermoanaerobacter sp. (strain X514) (taxid: 399726)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
444436449	334	SPDSY-like protein [Eucalyptus cladocaly	0.945	0.727	0.860	1e-122
225432624	329	PREDICTED: thermospermine synthase ACAUL	0.929	0.726	0.872	1e-122
449433323	338	PREDICTED: thermospermine synthase ACAUL	0.945	0.718	0.835	1e-119
255551457	336	spermine synthase, putative [Ricinus com	0.945	0.723	0.853	1e-118
356536017	334	PREDICTED: thermospermine synthase ACAUL	0.945	0.727	0.832	1e-117
255648363	334	unknown [Glycine max]	0.945	0.727	0.828	1e-116
359807232	334	uncharacterized protein LOC100801533 [Gl	0.945	0.727	0.824	1e-116
118484280	338	unknown [Populus trichocarpa]	0.945	0.718	0.852	1e-115
388492066	335	unknown [Lotus japonicus]	0.945	0.725	0.800	1e-115
224102051	338	predicted protein [Populus trichocarpa]	0.945	0.718	0.852	1e-114

>gi|444436449|gb|AGE09592.1| SPDSY-like protein [Eucalyptus cladocalyx]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/243 (86%), Positives = 226/243 (93%)

Query: 1   MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDI 60
           MG+IS SNGIS  NG + K+ +L GYRKSCWYEEEIEENLRW FALNSILHTG +++QDI
Sbjct: 1   MGDISVSNGISNGNGVNGKSHSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASQFQDI 60

Query: 61  ALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120
           ALLDTKPFGKALVIDGKLQSAE+DEFIYHESLVHPALL+HPNPKT+FIMGGGEGSTAREI
Sbjct: 61  ALLDTKPFGKALVIDGKLQSAEIDEFIYHESLVHPALLYHPNPKTLFIMGGGEGSTAREI 120

Query: 121 LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180
           LRHK VEKV MCDIDEEVV+FC+SYLVVN+EAF DPRLEL+INDARAELESRKE +DVII
Sbjct: 121 LRHKAVEKVSMCDIDEEVVDFCRSYLVVNREAFCDPRLELIINDARAELESRKECFDVII 180

Query: 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240
           GDLADPIEGGPCYKLYTKSFYE+ VKPRL   GIFVTQAGPAGIFSHTEVFSCIYNTL+Q
Sbjct: 181 GDLADPIEGGPCYKLYTKSFYEYTVKPRLTHNGIFVTQAGPAGIFSHTEVFSCIYNTLKQ 240

Query: 241 VFK 243
           VFK
Sbjct: 241 VFK 243

Source: Eucalyptus cladocalyx

Species: Eucalyptus cladocalyx

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432624|ref|XP_002281882.1| PREDICTED: thermospermine synthase ACAULIS5 [Vitis vinifera] gi|297737031|emb|CBI26232.3| unnamed protein product [Vitis vinifera]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/243 (87%), Positives = 227/243 (93%), Gaps = 4/243 (1%)

Query: 1   MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDI 60
           MG+ISCSNG    N  + K+ +L GYRKSCWYEEEIEENLRW FALNSILHTG T+YQDI
Sbjct: 1   MGDISCSNG----NEVNGKSHSLAGYRKSCWYEEEIEENLRWCFALNSILHTGATQYQDI 56

Query: 61  ALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120
           ALLDTKPFGKALVIDGKLQSAE+DEFIYHESLVHPALLHHPNPK+IFIMGGGEGSTAREI
Sbjct: 57  ALLDTKPFGKALVIDGKLQSAEIDEFIYHESLVHPALLHHPNPKSIFIMGGGEGSTAREI 116

Query: 121 LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180
           LRHKTVEKVVMCDIDEEVV+FCKSYLVVN+EAF DPRLELVINDARAELESR+E +DVII
Sbjct: 117 LRHKTVEKVVMCDIDEEVVDFCKSYLVVNREAFCDPRLELVINDARAELESREECFDVII 176

Query: 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240
           GDLADPIEGGPCY+LYTKSFYE  VKPRL+P GIFVTQAGPAG+FSHTEVFSCI+NTLRQ
Sbjct: 177 GDLADPIEGGPCYQLYTKSFYESTVKPRLSPGGIFVTQAGPAGVFSHTEVFSCIHNTLRQ 236

Query: 241 VFK 243
           VFK
Sbjct: 237 VFK 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433323|ref|XP_004134447.1| PREDICTED: thermospermine synthase ACAULIS5-like [Cucumis sativus]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/243 (83%), Positives = 222/243 (91%)

Query: 1   MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDI 60
           M ++S +N ++  N    K  +L GYRKSCWYEEEIEENLRWSFALNSILHTG ++YQDI
Sbjct: 1   MADVSSANLVNNGNELIEKGHSLNGYRKSCWYEEEIEENLRWSFALNSILHTGASQYQDI 60

Query: 61  ALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120
           ALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLHHPNPK+IFIMGGGEGSTARE+
Sbjct: 61  ALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHHPNPKSIFIMGGGEGSTAREL 120

Query: 121 LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180
           LRHKTVEKVVMCDIDEEVV+FCKSYL+VNKEAF DPRLEL+INDARAELE+R E YDVI+
Sbjct: 121 LRHKTVEKVVMCDIDEEVVDFCKSYLIVNKEAFCDPRLELIINDARAELENRTELYDVIV 180

Query: 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240
           GDLADPIEGGPCYKLYTKSFYE+ VKPRL  +GIF+TQAGPAGIFSHTEVFSCIYNTL+Q
Sbjct: 181 GDLADPIEGGPCYKLYTKSFYEYTVKPRLKQDGIFITQAGPAGIFSHTEVFSCIYNTLKQ 240

Query: 241 VFK 243
           VFK
Sbjct: 241 VFK 243

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551457|ref|XP_002516774.1| spermine synthase, putative [Ricinus communis] gi|223543862|gb|EEF45388.1| spermine synthase, putative [Ricinus communis]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/245 (85%), Positives = 223/245 (91%), Gaps = 2/245 (0%)

Query: 1   MGEISCSNGISQA-NGADAK-NVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
           MG+I+CSNGIS   NG + K + +  GYRKSCWYEEEIEENLRW FALNSILHTG ++YQ
Sbjct: 1   MGDIACSNGISNGTNGVNGKGHPSPNGYRKSCWYEEEIEENLRWCFALNSILHTGVSQYQ 60

Query: 59  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
           DIALLDTKPFGKALVIDGKLQSAEVDEFIYHE LVHPA+LHH N KTIFIMGGGEGSTAR
Sbjct: 61  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHECLVHPAILHHSNSKTIFIMGGGEGSTAR 120

Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
           EILRH+TVEKVVMCDIDEEVV+FCK+YL VN+EAF DPRLE++INDAR ELESRKE YDV
Sbjct: 121 EILRHRTVEKVVMCDIDEEVVDFCKAYLAVNREAFCDPRLEIIINDARNELESRKECYDV 180

Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
           IIGDLADPIEGGPCYKLYTKSFYE  VKPRLN  GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGDLADPIEGGPCYKLYTKSFYELTVKPRLNQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240

Query: 239 RQVFK 243
           RQVFK
Sbjct: 241 RQVFK 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536017|ref|XP_003536537.1| PREDICTED: thermospermine synthase ACAULIS5-like [Glycine max]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/245 (83%), Positives = 221/245 (90%), Gaps = 2/245 (0%)

Query: 1   MGEISCSNGISQAN--GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
           MGEI+  NGIS  N  G + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++YQ
Sbjct: 1   MGEIALPNGISNGNINGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQYQ 60

Query: 59  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
           DIALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLH+P+PK +FIMGGGEGSTAR
Sbjct: 61  DIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHNPSPKNVFIMGGGEGSTAR 120

Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
           E+LRHKT+ KVVMCDIDEEVV FCKSYLVVNKEAF D RLE+VINDARAELE+R ESYDV
Sbjct: 121 ELLRHKTINKVVMCDIDEEVVNFCKSYLVVNKEAFRDQRLEVVINDARAELETRDESYDV 180

Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
           IIGDLADPI+GGPCYKLYTKSFYE +VKPRL   GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGDLADPIDGGPCYKLYTKSFYELIVKPRLKQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240

Query: 239 RQVFK 243
           RQVFK
Sbjct: 241 RQVFK 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648363|gb|ACU24632.1| unknown [Glycine max]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/245 (82%), Positives = 220/245 (89%), Gaps = 2/245 (0%)

Query: 1   MGEISCSNGISQAN--GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
           MGEI+  NGIS  N  G + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++YQ
Sbjct: 1   MGEIALPNGISNGNINGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQYQ 60

Query: 59  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
           DIALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLH+P+PK +FIMGGGEGSTAR
Sbjct: 61  DIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHNPSPKNVFIMGGGEGSTAR 120

Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
           E+LRHKT+ KVVMCDIDEEVV FCKSYLVVNKEAF D RLE+VINDARAELE+R ESYDV
Sbjct: 121 ELLRHKTINKVVMCDIDEEVVNFCKSYLVVNKEAFRDQRLEVVINDARAELETRDESYDV 180

Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
           IIG LADPI+GGPCYKLYTKSFYE +VKPRL   GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGGLADPIDGGPCYKLYTKSFYELIVKPRLKQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240

Query: 239 RQVFK 243
           RQVFK
Sbjct: 241 RQVFK 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807232|ref|NP_001241620.1| uncharacterized protein LOC100801533 [Glycine max] gi|255644595|gb|ACU22800.1| unknown [Glycine max]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/245 (82%), Positives = 220/245 (89%), Gaps = 2/245 (0%)

Query: 1   MGEISCSNGISQAN--GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
           MGEI+  NGIS  N  G + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++YQ
Sbjct: 1   MGEIALPNGISNGNINGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQYQ 60

Query: 59  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
           DIALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLH+P+PK +FIMGGGEGSTAR
Sbjct: 61  DIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHNPSPKNVFIMGGGEGSTAR 120

Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
           E+LRHKT++KVVMCDIDEEVV FCKSY VVNKEAF D RLE+VINDAR ELE+R ESYDV
Sbjct: 121 ELLRHKTIDKVVMCDIDEEVVNFCKSYFVVNKEAFRDTRLEVVINDARVELEARDESYDV 180

Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
           IIGDLADPI+GGPCYKLYTKSFYE +VKPRL   GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGDLADPIDGGPCYKLYTKSFYELIVKPRLKQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240

Query: 239 RQVFK 243
           RQVFK
Sbjct: 241 RQVFK 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484280|gb|ABK94019.1| unknown [Populus trichocarpa]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/244 (85%), Positives = 222/244 (90%), Gaps = 1/244 (0%)

Query: 1   MGEISCSNGISQANGADAK-NVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQD 59
           MGEISCSNGI   NG + K + +L GYRKSCWYEEEIEENLRW FALNSILHTG +RYQD
Sbjct: 1   MGEISCSNGIGNGNGVNGKTHSSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASRYQD 60

Query: 60  IALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTARE 119
           IALLDTKPFGKAL+IDGKLQSAEVDEFIYHESLVHPALLHH +PKT+FIMGGGEGSTARE
Sbjct: 61  IALLDTKPFGKALIIDGKLQSAEVDEFIYHESLVHPALLHHSSPKTVFIMGGGEGSTARE 120

Query: 120 ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179
           ILRHKT  KVVMCDIDEEVV+FCK+YLVVN+EAF DPRLE++INDARAELE  KE YDVI
Sbjct: 121 ILRHKTAVKVVMCDIDEEVVDFCKAYLVVNREAFCDPRLEVIINDARAELEIGKECYDVI 180

Query: 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239
           IGDLADPIEGGPCYKLYTKSFYE  VKP+LN  GIFVTQAGPAGIFSHTEVFSCI NTL+
Sbjct: 181 IGDLADPIEGGPCYKLYTKSFYEHTVKPKLNRGGIFVTQAGPAGIFSHTEVFSCICNTLK 240

Query: 240 QVFK 243
           QVFK
Sbjct: 241 QVFK 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492066|gb|AFK34099.1| unknown [Lotus japonicus]

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/246 (80%), Positives = 220/246 (89%), Gaps = 3/246 (1%)

Query: 1   MGEISCSNGISQA---NGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRY 57
           MGE++ S+GIS     NG + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++Y
Sbjct: 1   MGEVAFSSGISNGSVNNGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQY 60

Query: 58  QDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA 117
           QDIALLDTKPFGKALVI GKLQSAE DEFIYHE LVHPALLHHPNPK +FIMGGGEGSTA
Sbjct: 61  QDIALLDTKPFGKALVIVGKLQSAETDEFIYHECLVHPALLHHPNPKNVFIMGGGEGSTA 120

Query: 118 REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177
           RE+LRHKT++KV+MCDIDEE V FCKSYLVVNKEAF D RLE++INDAR ELE+R+E+YD
Sbjct: 121 RELLRHKTIDKVLMCDIDEEAVNFCKSYLVVNKEAFCDLRLEVIINDARGELEAREENYD 180

Query: 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT 237
           VI+GDLADPI+GGPCYKLYTKSFYEF VKP+L   GIFVTQAGPAGIFSH EVFSCIYNT
Sbjct: 181 VIVGDLADPIDGGPCYKLYTKSFYEFTVKPKLKQGGIFVTQAGPAGIFSHKEVFSCIYNT 240

Query: 238 LRQVFK 243
           LRQVFK
Sbjct: 241 LRQVFK 246

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102051|ref|XP_002312526.1| predicted protein [Populus trichocarpa] gi|222852346|gb|EEE89893.1| predicted protein [Populus trichocarpa]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/244 (85%), Positives = 222/244 (90%), Gaps = 1/244 (0%)

Query: 1   MGEISCSNGISQANGADAK-NVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQD 59
           MGEISCSNGI   NG + K + +L GYRKSCWYEEEIEENLRW FALNSILHTG +RYQD
Sbjct: 1   MGEISCSNGIGNGNGVNGKTHSSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASRYQD 60

Query: 60  IALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTARE 119
           IALLDTKPFGKAL+IDGKLQSAEVDEFIYHESLVHPALLHH +PKT+FIMGGGEGSTARE
Sbjct: 61  IALLDTKPFGKALIIDGKLQSAEVDEFIYHESLVHPALLHHSSPKTVFIMGGGEGSTARE 120

Query: 120 ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179
           ILRHKT  KVVMCDIDEEVV+FCK+YLVVN+EAF DPRLE++INDARAELE  KE YDVI
Sbjct: 121 ILRHKTAVKVVMCDIDEEVVDFCKAYLVVNREAFCDPRLEVIINDARAELEIGKECYDVI 180

Query: 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239
           IGDLADPIEGGPCYKLYTKSFYE  VKP+LN  GIFVTQAGPAGIFSHTEVFSCI NTL+
Sbjct: 181 IGDLADPIEGGPCYKLYTKSFYEHTVKPKLNRGGIFVTQAGPAGIFSHTEVFSCICNTLK 240

Query: 240 QVFK 243
           QVFK
Sbjct: 241 QVFK 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2180816	339	ACL5 "ACAULIS 5" [Arabidopsis	0.937	0.710	0.669	1.2e-90
TIGR_CMR|CHY_1240	273	CHY_1240 "spermidine synthase"	0.805	0.758	0.386	5.3e-40
UNIPROTKB|P09158	288	speE "SpeE" [Escherichia coli	0.735	0.656	0.417	6.3e-37
TIGR_CMR|BA_5619	275	BA_5619 "spermidine synthase"	0.805	0.752	0.334	1.9e-35
TIGR_CMR|CHY_1621	277	CHY_1621 "spermidine synthase"	0.719	0.667	0.386	4e-35
CGD|CAL0006284	297	SPE3 [Candida albicans (taxid:	0.809	0.700	0.359	1.1e-34
POMBASE|SPBC12C2.07c	298	SPBC12C2.07c "spermidine synth	0.817	0.704	0.336	2.2e-34
ASPGD|ASPL0000062169	292	spdA [Emericella nidulans (tax	0.735	0.647	0.365	7.4e-34
DICTYBASE|DDB_G0268630	284	spsA "Spermidine synthase" [Di	0.719	0.651	0.373	2e-33
WB|WBGene00012909	366	spds-1 [Caenorhabditis elegans	0.762	0.535	0.363	2.5e-33

TAIR|locus:2180816 ACL5 "ACAULIS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 162/242 (66%), Positives = 202/242 (83%)

Query:     3 EISCSNGISQANGADAKNVALTGYRKSC-WYEEEIEENLRWSFALNSILHTGETRYQDIA 61
             E+   NG  + + A +    L   ++ C WYEE I+++L+WSFALNS+LH G + YQDIA
Sbjct:     6 EVMFGNGFPEIHKATSPTQTLHSNQQDCHWYEETIDDDLKWSFALNSVLHQGTSEYQDIA 65

Query:    62 LLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREIL 121
             LLDTK FGK LVIDGK+QSAE DEFIYHE L+HPALL HPNPKT+FIMGGGEGS AREIL
Sbjct:    66 LLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNPKTVFIMGGGEGSAAREIL 125

Query:   122 RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181
             +H T+EKVVMCDID+EVV+FC+ +L VN +AF + +LELVI DA+AELE R+E +D+I+G
Sbjct:   126 KHTTIEKVVMCDIDQEVVDFCRRFLTVNSDAFCNKKLELVIKDAKAELEKREEKFDIIVG 185

Query:   182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241
             DLADP+EGGPCY+LYTKSFY+ ++KP+L+P GIFVTQAGPAGIF+H EVF+ IYNT++QV
Sbjct:   186 DLADPVEGGPCYQLYTKSFYQNILKPKLSPNGIFVTQAGPAGIFTHKEVFTSIYNTMKQV 245

Query:   242 FK 243
             FK
Sbjct:   246 FK 247

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016768 "spermine synthase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009926 "auxin polar transport" evidence=RCA;IMP

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010487 "thermospermine synthase activity" evidence=IDA

GO:0048759 "vessel member cell differentiation" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009826 "unidimensional cell growth" evidence=IGI

TIGR_CMR|CHY_1240 CHY_1240 "spermidine synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 82/212 (38%), Positives = 134/212 (63%)

Query:    31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
             WY E+  EN +  + ++ IL+  +T YQ++A+++   FG++L++D  +Q+ E DE++YHE
Sbjct:     2 WYIEKHNENYQVGWRVSDILYQKKTPYQNLAIVEFAEFGRSLILDDAVQTTEKDEYVYHE 61

Query:    91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
              LVHPA   H +P+   I+GGG+G T RE+L+HKT+EKV + +IDEEV++  K +L    
Sbjct:    62 MLVHPAAFTHKSPRRALIIGGGDGGTLREVLKHKTIEKVDLVEIDEEVIKASKQFLPSLS 121

Query:   151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
             E+F+DPR+E++I+D    ++  K  YD+I  D +DP+  GP   LY++ FY  +    L 
Sbjct:   122 ESFNDPRVEVIIDDGIRYVKKVKNYYDLIFVDASDPV--GPAVVLYSEEFYRSLFDA-LT 178

Query:   211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242
              +GI   Q+     +   ++F  I  TLR +F
Sbjct:   179 ADGIAAVQSESPNFYP--DIFVKIVTTLRDIF 208

GO:0004766 "spermidine synthase activity" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

UNIPROTKB|P09158 speE "SpeE" [Escherichia coli K-12 (taxid:83333)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 81/194 (41%), Positives = 119/194 (61%)

Query:    28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFI 87
             K  W+E  + +     FA++++L+  +T +QD+ + +   FG+ + +DG +Q+ E DEFI
Sbjct:     4 KKQWHET-LHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFI 62

Query:    88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147
             YHE + H  LL H + K + I+GGG+G+  RE+ RHK VE + M +ID  VV FC+ YL 
Sbjct:    63 YHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 122

Query:   148 V-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206
               N  ++ DPR +LVI+D    +    +++DVII D  DPI  GP   L+T +FYE   K
Sbjct:   123 NHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEGC-K 179

Query:   207 PRLNPEGIFVTQAG 220
               LNP GIFV Q G
Sbjct:   180 RCLNPGGIFVAQNG 193

GO:0005829 "cytosol" evidence=IDA

GO:0008295 "spermidine biosynthetic process" evidence=IEA;IMP

GO:0004766 "spermidine synthase activity" evidence=IEA;IMP;IDA

TIGR_CMR|BA_5619 BA_5619 "spermidine synthase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 71/212 (33%), Positives = 125/212 (58%)

Query:    31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
             W+ E+  ++   +  +N  LHT +T +Q + +++T+ FG  L++DG + + E DEF+YHE
Sbjct:     4 WFTEKQTKHFGITARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHE 63

Query:    91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
              + H  L  HPNP+ + ++GGG+G   RE+L+H +V+K  + +ID +V+E+ K YL    
Sbjct:    64 MVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIA 123

Query:   151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
              A  + R+E+ + D    +   +  YDVI+ D  +P+  GP   L+TK FY  + K  L 
Sbjct:   124 GALDNERVEVKVGDGFLHIAESENEYDVIMVDSTEPV--GPAVNLFTKGFYAGISKA-LK 180

Query:   211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242
              +GIFV Q      F+  E+ + ++  ++++F
Sbjct:   181 EDGIFVAQTDNPW-FT-PELITTVFKDVKEIF 210

GO:0004766 "spermidine synthase activity" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1621 CHY_1621 "spermidine synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 73/189 (38%), Positives = 118/189 (62%)

Query:    31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
             W+ E+   N+  +  +   LHT  T +Q++A+++T  FG+ LV+DG +Q+  VDEF+YHE
Sbjct:     4 WFTEKQTPNVGITCKITRTLHTETTPFQELAVIETLQFGRMLVLDGMVQTTVVDEFVYHE 63

Query:    91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VN 149
              + H AL  HPNP+ + ++GGG+G T REI++H  V+K V+ +IDE V+E  K YL  + 
Sbjct:    64 MIAHVALNTHPNPEKVMVIGGGDGGTIREIVKHPKVKKAVLVEIDERVIEVSKQYLPEIA 123

Query:   150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
                  +P++E+ + D    ++  K  YDVII D  +P+  GP  +L+++ FY+ V +  L
Sbjct:   124 VALMGNPKVEVRVEDGIKHVKEHKGEYDVIIIDSTEPV--GPAVELFSEDFYKNVYES-L 180

Query:   210 NPEGIFVTQ 218
               +GI V Q
Sbjct:   181 KDDGIMVAQ 189

GO:0004766 "spermidine synthase activity" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

CGD|CAL0006284 SPE3 [Candida albicans (taxid:5476)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 79/220 (35%), Positives = 125/220 (56%)

Query:    28 KSCWYEEEIEENLRW-----SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAE 82
             K  W+ E I + + W     S  +  +LH  +++YQD+ +  +  +G  LV+D  +Q  E
Sbjct:    11 KDGWFAE-ISDTM-WPGQAMSLKVEKVLHVEKSKYQDVLVFKSTTYGNVLVLDNCIQVTE 68

Query:    83 VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC 142
              DEF Y E + H AL  HPNPK   ++GGG+G   REIL+H+++E+  +CDIDE V+E  
Sbjct:    69 RDEFSYQEMITHLALNSHPNPKKALVIGGGDGGVLREILKHESIEEAWLCDIDETVIEVS 128

Query:   143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE 202
             K YL    +++ DPR  + I D    LE  K  +DVII D +DP EG P   L+ K +++
Sbjct:   129 KKYLPNMAKSYDDPRTRVHIGDGFKFLEEYKNQFDVIITDSSDP-EG-PAESLFQKPYFQ 186

Query:   203 FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242
              ++K  L  +G+  TQA    ++ H ++ S +     ++F
Sbjct:   187 -LLKDALTEKGVITTQA--ENMWIHMDIISKLKKDCNEIF 223

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015940 "pantothenate biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

POMBASE|SPBC12C2.07c SPBC12C2.07c "spermidine synthase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 73/217 (33%), Positives = 126/217 (58%)

Query:    28 KSCWYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
             K  W+ E   +      +  +  +L+ G+++YQD+ + +++ +G  LV+DG +Q+ E DE
Sbjct:    12 KDGWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDE 71

Query:    86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
             F Y E + H AL  HPNPK + ++GGG+G   RE+++H+ VE+ ++CDIDE+V++  K Y
Sbjct:    72 FSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQY 131

Query:   146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
             L      F+ P++++ I D    L+  + ++DVII D +DP   GP   L+ K +++ ++
Sbjct:   132 LPEMSAGFNHPKVKVHIGDGFKFLQDYQNTFDVIITDSSDP--DGPAEALFQKPYFQ-LL 188

Query:   206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242
                L   G+  TQA    I  H  V S +   ++ VF
Sbjct:   189 SDALRGGGVITTQAECMWI--HLGVISNVLTAVKTVF 223

GO:0004766 "spermidine synthase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008295 "spermidine biosynthetic process" evidence=ISO

GO:0015940 "pantothenate biosynthetic process" evidence=ISO

ASPGD|ASPL0000062169 spdA [Emericella nidulans (taxid:162425)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 71/194 (36%), Positives = 114/194 (58%)

Query:    28 KSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
             K  W+ E+ E       +  +N ILH  +++YQD+ + ++  +G  LV+D  +Q  E DE
Sbjct:    10 KDGWFSEQSEMWPGQAMNLRVNQILHHEKSKYQDVLVFESSDYGTVLVLDNVIQCTERDE 69

Query:    86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
             F Y E + H A+  HPNPK + ++GGG+G   RE+++H+TVE+ ++CDIDE V+   K Y
Sbjct:    70 FSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREVVKHETVEEAILCDIDEAVIRVSKKY 129

Query:   146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
             L      F  P +++ + D    L+ R+  +DVII D +DP EG P   L+ K ++E ++
Sbjct:   130 LPGMSIGFQHPNVKVHVGDGFEFLKQRQNEFDVIITDSSDP-EG-PAESLFQKPYFE-LL 186

Query:   206 KPRLNPEGIFVTQA 219
             +  L   G+  TQA
Sbjct:   187 RDALRDGGVITTQA 200

GO:0016768 "spermine synthase activity" evidence=RCA

GO:0008295 "spermidine biosynthetic process" evidence=IMP

GO:0004766 "spermidine synthase activity" evidence=IEA;RCA

GO:0006525 "arginine metabolic process" evidence=RCA

GO:0097308 "cellular response to farnesol" evidence=IEP

GO:0005576 "extracellular region" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015940 "pantothenate biosynthetic process" evidence=IEA

DICTYBASE|DDB_G0268630 spsA "Spermidine synthase" [Dictyostelium discoideum (taxid:44689)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 71/190 (37%), Positives = 111/190 (58%)

Query:    31 WYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
             W+ E  E      +S  +  +LH  ++ YQD  +  +K FG  LV+DG +Q+ E DEF Y
Sbjct:     8 WFSEISEFWPGNSFSLEVEKVLHHEKSEYQDFLVFKSKSFGNVLVLDGVIQATERDEFAY 67

Query:    89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
              E + H  L  HP+PK + ++GGG+G   RE+++H  VE V +C+ID+ V+E  +++L  
Sbjct:    68 QEMITHIPLFSHPSPKRVLVVGGGDGGVLREVVKHPLVESVTLCEIDKGVIEASRNFLPN 127

Query:   149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
              +  F  P++ L I D    +  RK  +DVII D +DPI  GP   L+ +++YE ++K  
Sbjct:   128 MRVGFDHPKVTLFIGDGMEFMRQRKGEFDVIITDSSDPI--GPAQGLFERAYYE-LLKAA 184

Query:   209 LNPEGIFVTQ 218
             L P GI  +Q
Sbjct:   185 LAPGGIVCSQ 194

GO:0003824 "catalytic activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

WB|WBGene00012909 spds-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 73/201 (36%), Positives = 122/201 (60%)

Query:    42 WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
             +S  +  +L   +++YQD+ + ++  +G  LV+DG +Q+ E DEF Y E L H  +  HP
Sbjct:    48 FSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHP 107

Query:   102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
             +PK + I+GGG+G   RE+L+H++VEKV MC+IDE V++  K +L      FS P+L+L 
Sbjct:   108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF 167

Query:   162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
               D    L++ K  +DVII D +DP+  GP   L+ +S+YE +++  L  +GI  +Q G 
Sbjct:   168 CGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYE-LLRDALKEDGILSSQ-GE 223

Query:   222 AGIFSHTEVFSCIYNTLRQVF 242
                +   ++ S + ++ R +F
Sbjct:   224 CP-WLDMKLISTVIHSARDLF 243

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7X6	ACL5_ARATH	2, ., 5, ., 1, ., 7, 9	0.6694	0.9377	0.7109	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.79	LOW CONFIDENCE prediction!
4th Layer	2.5.1.16	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019965001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (329 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	pVvSAMDC	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (360 aa)						•	•		0.919
	SAMDC	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (360 aa)						•	•		0.919
	GSVIVG00019871001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (350 aa)						•	•		0.913
	GSVIVG00017121001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (387 aa)						•	•		0.911
	grip58	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (265 aa)						•	•		0.910
	GSVIVG00016806001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (496 aa)	•					•	•		0.906
	GSVIVG00026899001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (474 aa)						•			0.899
	GSVIVG00016601001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (445 aa)						•			0.899
	ACS1	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_1179, whole ge [...] (469 aa)						•			0.899
	GSVIVG00026399001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (348 aa)	•						•		0.557

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
PLN02823	336	PLN02823, PLN02823, spermine synthase	1e-172
PRK00811	283	PRK00811, PRK00811, spermidine synthase; Provision	7e-82
COG0421	282	COG0421, SpeE, Spermidine synthase [Amino acid tra	1e-70
pfam01564	240	pfam01564, Spermine_synth, Spermine/spermidine syn	2e-68
TIGR00417	271	TIGR00417, speE, spermidine synthase	2e-66
PRK03612	521	PRK03612, PRK03612, spermidine synthase; Provision	5e-55
PLN02366	308	PLN02366, PLN02366, spermidine synthase	2e-47
COG4262	508	COG4262, COG4262, Predicted spermidine synthase wi	6e-42
PRK01581	374	PRK01581, speE, spermidine synthase; Validated	6e-29
PRK04457	262	PRK04457, PRK04457, spermidine synthase; Provision	8e-08
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-07
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	8e-07
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-05
PRK00536	262	PRK00536, speE, spermidine synthase; Provisional	2e-04
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	6e-04

>gnl|CDD|178418 PLN02823, PLN02823, spermine synthase

 Score =  477 bits (1229), Expect = e-172
 Identities = 181/244 (74%), Positives = 207/244 (84%), Gaps = 1/244 (0%)

Query: 1   MGEISCSNGISQANGADAKNVA-LTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQD 59
             EI   NG S          A  + Y KS WYEEEIE++LRWS+A+NS+LHTG + +QD
Sbjct: 1   AVEIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQD 60

Query: 60  IALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTARE 119
           IAL+DTKPFGK L+IDGK+QSAE DEF+YHESLVHPALLHHPNPKT+FIMGGGEGSTARE
Sbjct: 61  IALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTARE 120

Query: 120 ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179
           +LRHKTVEKVVMCDID+EVV+FC+ +L VN+EAF D RLEL+INDARAELE R E +DVI
Sbjct: 121 VLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180

Query: 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239
           IGDLADP+EGGPCY+LYTKSFYE +VKP+LNP GIFVTQAGPAGI +H EVFS IYNTLR
Sbjct: 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLR 240

Query: 240 QVFK 243
           QVFK
Sbjct: 241 QVFK 244

Length = 336

>gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional

 Score =  246 bits (631), Expect = 7e-82
 Identities = 88/215 (40%), Positives = 130/215 (60%), Gaps = 8/215 (3%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W+ E + +N   SF +  +L+  ++ +Q I + +T  FG+ L +DG + + E DEFIYHE
Sbjct: 5   WFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHE 64

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVN 149
            + H  L  HPNPK + I+GGG+G T RE+L+H +VEK+ + +IDE VVE C+ YL  + 
Sbjct: 65  MMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIA 124

Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
             A+ DPR+ELVI D    +   + S+DVII D  DP+  GP   L+TK FYE   +  L
Sbjct: 125 GGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPV--GPAEGLFTKEFYENCKR-AL 181

Query: 210 NPEGIFVTQAG-PAGIFSHTEVFSCIYNTLRQVFK 243
             +GIFV Q+G P   F   +    ++  L++VF 
Sbjct: 182 KEDGIFVAQSGSP---FYQADEIKDMHRKLKEVFP 213

Length = 283

>gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]

 Score =  218 bits (556), Expect = 1e-70
 Identities = 89/213 (41%), Positives = 126/213 (59%), Gaps = 5/213 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W+ E  +  LR  F +  +L+  ++ YQDI + +++ FGK LV+DG +Q  E DEFIYHE
Sbjct: 5   WFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHE 64

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            L H  LL HPNPK + I+GGG+G T RE+L+H  VE++ M +ID  V+E  + YL    
Sbjct: 65  MLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPS 124

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
               DPR+E++I+D    L   +E +DVII D  DP+  GP   L+T+ FYE   +  L 
Sbjct: 125 GGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV--GPAEALFTEEFYE-GCRRALK 181

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
            +GIFV QAG    F   E  +  Y  + +VF 
Sbjct: 182 EDGIFVAQAG--SPFLQDEEIALAYRNVSRVFS 212

Length = 282

>gnl|CDD|216573 pfam01564, Spermine_synth, Spermine/spermidine synthase

 Score =  210 bits (537), Expect = 2e-68
 Identities = 84/215 (39%), Positives = 130/215 (60%), Gaps = 7/215 (3%)

Query: 31  WYEEEIEEN--LRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E ++    L   + +  +L+  ++ YQDI + ++K FGK LV+DG++Q  E DEFIY
Sbjct: 2   WFTEILDLWPGLAVEYKVEKVLYEEKSEYQDIEIFESKTFGKILVLDGRVQLTERDEFIY 61

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
           HE + H  L  HPNPK + I+GGG+G   RE+++H +VEK+ + +IDE+V+EF K +L  
Sbjct: 62  HEMIAHVPLCSHPNPKKVLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPS 121

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
               F DPR+++VI D    L+     +DVII D  DP+  GP   L++K FY+ + +  
Sbjct: 122 LAGGFDDPRVKVVIGDGFKFLKDYLVEFDVIIVDSTDPV--GPAENLFSKEFYDLLKR-A 178

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           L  +G+FVTQA     + H E+   I    ++VF 
Sbjct: 179 LKEDGVFVTQAE--SPWLHLELIINILKNGKKVFP 211

Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase. Length = 240

>gnl|CDD|188048 TIGR00417, speE, spermidine synthase

 Score =  207 bits (528), Expect = 2e-66
 Identities = 83/213 (38%), Positives = 132/213 (61%), Gaps = 5/213 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W+ E  ++N   +  ++ +L+  ++ +QD+ + +T+ FG  LV+DG +Q+ E DEFIYHE
Sbjct: 1   WFTEYHDKNFGLTMKVDKVLYHEKSEFQDLEIFETEAFGNVLVLDGVVQTTERDEFIYHE 60

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            + H  L  HPNPK + ++GGG+G   RE+L+HK+VE   + DIDE+V+E  + YL    
Sbjct: 61  MITHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKSVESATLVDIDEKVIELSRKYLPNLA 120

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
            ++ DPR++LVI+D    L   + ++DVII D  DP+  GP   L+TK FYE ++K  LN
Sbjct: 121 GSYDDPRVKLVIDDGFKFLADTENTFDVIIVDSTDPV--GPAETLFTKEFYE-LLKKALN 177

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           P+GIFV Q+     +   E+   +   L++ F 
Sbjct: 178 PDGIFVAQSE--SPWLQLELIIDLKRKLKEAFP 208

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM [Central intermediary metabolism, Polyamine biosynthesis]. Length = 271

>gnl|CDD|235139 PRK03612, PRK03612, spermidine synthase; Provisional

 Score =  184 bits (469), Expect = 5e-55
 Identities = 69/219 (31%), Positives = 112/219 (51%), Gaps = 14/219 (6%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIAL---LDTKPFGKALVIDGKLQSAEVDEFI 87
              + IE         + +++  +T YQ I +    + +     L ++G+LQ +  DE+ 
Sbjct: 223 VLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYR 282

Query: 88  YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147
           YHE+LVHPA+     P+ + ++GGG+G   RE+L++  VE+V + D+D  + E  ++   
Sbjct: 283 YHEALVHPAMAASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPA 342

Query: 148 V---NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP--IEGGPCYKLYTKSFYE 202
           +   N  A  DPR+ +V +DA   L    E +DVII DL DP     G   KLY+  FY 
Sbjct: 343 LRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALG---KLYSVEFYR 399

Query: 203 FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241
            ++K RL P+G+ V Q+     +   + F  I  TL   
Sbjct: 400 -LLKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAA 435

Length = 521

>gnl|CDD|215208 PLN02366, PLN02366, spermidine synthase

 Score =  159 bits (404), Expect = 2e-47
 Identities = 72/202 (35%), Positives = 115/202 (56%), Gaps = 6/202 (2%)

Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
           S  +  +L  G++ +QD+ + ++  +GK LV+DG +Q  E DE  Y E + H  L   PN
Sbjct: 32  SLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPN 91

Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
           PK + ++GGG+G   REI RH +VE++ +C+ID+ V++  K +       F DPR+ L I
Sbjct: 92  PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHI 151

Query: 163 NDARAELESRKE-SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
            D    L++  E +YD II D +DP+  GP  +L+ K F+E V +  L P G+  TQA  
Sbjct: 152 GDGVEFLKNAPEGTYDAIIVDSSDPV--GPAQELFEKPFFESVARA-LRPGGVVCTQA-- 206

Query: 222 AGIFSHTEVFSCIYNTLRQVFK 243
             ++ H ++   +    R+ FK
Sbjct: 207 ESMWLHMDLIEDLIAICRETFK 228

Length = 308

>gnl|CDD|226713 COG4262, COG4262, Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

 Score =  149 bits (377), Expect = 6e-42
 Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 12/197 (6%)

Query: 49  ILHTGETRYQDIALLDTKPFGK--ALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106
           I+H  ++ YQ I +  T+  G    L +DG LQ +  DE+ YHESLV+PAL      +++
Sbjct: 237 IIHAIQSPYQRIVV--TR-RGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSV 293

Query: 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAFSDPRLELVIN 163
            ++GGG+G   RE+L++  VE++ + D+D  ++E      V   +N+ +FSDPR+ +V +
Sbjct: 294 LVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVND 353

Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           DA   L +  + +DV+I DL DP       +LY+  FY  ++   L   G+ V QAG   
Sbjct: 354 DAFQWLRTAADMFDVVIVDLPDP-STPSIGRLYSVEFYR-LLSRHLAETGLMVVQAGSP- 410

Query: 224 IFSHTEVFSCIYNTLRQ 240
            +    VF  I  T++ 
Sbjct: 411 -YFTPRVFWRIDATIKS 426

Length = 508

>gnl|CDD|234961 PRK01581, speE, spermidine synthase; Validated

 Score =  112 bits (281), Expect = 6e-29
 Identities = 62/176 (35%), Positives = 96/176 (54%), Gaps = 7/176 (3%)

Query: 47  NSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106
           ++ L   ++ YQ+I LL        L +D +LQ + VDE IYHE+LVHP +    +PK +
Sbjct: 97  HTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRV 154

Query: 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS---YLVVNKEAFSDPRLELVIN 163
            I+GGG+G   RE+L+++TV  V + D+D  ++   ++    + +NK AF D R+ + + 
Sbjct: 155 LILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC 214

Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
           DA+  L S    YDVII D  DP        LYT   +  +    L  +G FV Q+
Sbjct: 215 DAKEFLSSPSSLYDVIIIDFPDPAT-ELLSTLYTSELFARIAT-FLTEDGAFVCQS 268

Length = 374

>gnl|CDD|179854 PRK04457, PRK04457, spermidine synthase; Provisional

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 97  LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP 156
           LL +P P+ I  +G G GS A+ I  +    +    +I+ +V+   +++  +     +  
Sbjct: 61  LLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL---PENGE 117

Query: 157 RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
           R E++  D    +   + S DVI+ D  D    G    L T+ F++   +  L+ +GIFV
Sbjct: 118 RFEVIEADGAEYIAVHRHSTDVILVDGFD--GEGIIDALCTQPFFD-DCRNALSSDGIFV 174

Query: 217 T 217
            
Sbjct: 175 V 175

Length = 262

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169
           G G G+ A  +       +V   DI    +E  +        A     +E++  DA    
Sbjct: 6   GCGTGALALALASGP-GARVTGVDISPVALELARK----AAAALLADNVEVLKGDAEELP 60

Query: 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218
               ES+DVII D                 F E   +  L P G+ V  
Sbjct: 61  PEADESFDVIISDPP-----LHHLVEDLARFLE-EARRLLKPGGVLVLT 103

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 46.3 bits (110), Expect = 8e-07
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
              +   G G G+      R     +VV  ++D E     +  L     A   PR+ +V+
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRL---ALAGLAPRVRVVV 57

Query: 163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFY-EFVVK--PRLNPEGIFV 216
            DAR  LE    S+D+++G+   P           +  Y  F+      L P G+ V
Sbjct: 58  GDARELLELPDGSFDLVLGNP--PYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112

This family contains methyltransferase domains. Length = 117

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
              +  +G G GS A E+ R     +V   D+  E++E  +     N +    PR+  V 
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARE----NAKLALGPRITFVQ 57

Query: 163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
            DA   L+   E +D +         GG   +L         +   L P G  V  A
Sbjct: 58  GDAPDALDL-LEGFDAVFIGGG----GGDLLELLDA------LASLLKPGGRLVLNA 103

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|134311 PRK00536, speE, spermidine synthase; Provisional

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 11/154 (7%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W  +EI   LR  + + + L    + +  + +  +K FG+  +++ +L       F++ E
Sbjct: 2   WITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNKQLL---FKNFLHIE 58

Query: 91  S--LVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
           S  L H         K + I+ G +   A ++ ++ T   V     DE++++   S+   
Sbjct: 59  SELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPH 116

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGD 182
             E  ++         A+  L+   + YD+II  
Sbjct: 117 FHEVKNNKNFTH----AKQLLDLDIKKYDLIICL 146

Length = 262

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 29/151 (19%)

Query: 81  AEVDEFIYHESL--VHPA-------LLHHPNPKTIFIMGGGEG-STAR--EILRHKTVEK 128
           AE++EF     +  + P        L     PK I  +G   G S       L      +
Sbjct: 29  AELEEFARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDG--R 86

Query: 129 VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--ESYDVIIGDLADP 186
           +   + DEE  E  +  L    EA  D R+EL++     ++ SR    S+D++  D AD 
Sbjct: 87  LTTIERDEERAEIARENL---AEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID-AD- 141

Query: 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217
                  K     + E  + P L P G+ V 
Sbjct: 142 -------KADYPEYLERAL-PLLRPGGLIVA 164

Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	100.0
PLN02823	336	spermine synthase	100.0
PRK00536	262	speE spermidine synthase; Provisional	100.0
PLN02366	308	spermidine synthase	100.0
PRK00811	283	spermidine synthase; Provisional	100.0
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	100.0
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	100.0
PRK01581	374	speE spermidine synthase; Validated	100.0
COG4262	508	Predicted spermidine synthase with an N-terminal m	100.0
PRK03612	521	spermidine synthase; Provisional	100.0
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	100.0
PRK04457	262	spermidine synthase; Provisional	99.95
COG2521	287	Predicted archaeal methyltransferase [General func	99.74
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.64
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.57
COG4123	248	Predicted O-methyltransferase [General function pr	99.54
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.53
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.48
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.48
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.47
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.47
COG4122	219	Predicted O-methyltransferase [General function pr	99.45
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.45
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.43
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.42
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.42
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.41
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.4
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.4
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.4
PLN02476	278	O-methyltransferase	99.39
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.39
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.39
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.38
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.37
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.36
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.36
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.36
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.35
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.35
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.34
COG2890	280	HemK Methylase of polypeptide chain release factor	99.34
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.34
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.34
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.33
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.32
KOG2352	482	consensus Predicted spermine/spermidine synthase [	99.32
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.32
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.32
PRK07402	196	precorrin-6B methylase; Provisional	99.31
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.31
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.31
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.31
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.31
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.31
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.3
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.3
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.29
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.29
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.29
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.29
PLN03075	296	nicotianamine synthase; Provisional	99.27
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.27
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.27
PLN02244	340	tocopherol O-methyltransferase	99.27
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.27
PRK14967	223	putative methyltransferase; Provisional	99.26
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.26
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.25
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.25
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.25
PLN02672	1082	methionine S-methyltransferase	99.25
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.25
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.24
PRK04266	226	fibrillarin; Provisional	99.22
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.21
PRK11207	197	tellurite resistance protein TehB; Provisional	99.2
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.2
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.2
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.2
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.2
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.2
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.19
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.19
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.18
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.17
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.17
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.17
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.16
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.16
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.16
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.15
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.15
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.15
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.15
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.15
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.14
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.13
TIGR00438	188	rrmJ cell division protein FtsJ.	99.11
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.11
PRK14968	188	putative methyltransferase; Provisional	99.11
PHA03411	279	putative methyltransferase; Provisional	99.1
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.09
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.09
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.09
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.08
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.08
PLN02490	340	MPBQ/MSBQ methyltransferase	99.07
PLN02336	475	phosphoethanolamine N-methyltransferase	99.07
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.07
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.06
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.06
PHA03412	241	putative methyltransferase; Provisional	99.06
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.05
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.05
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.05
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.05
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.05
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.04
PTZ00146	293	fibrillarin; Provisional	99.04
PRK08317	241	hypothetical protein; Provisional	99.03
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.03
PRK12335	287	tellurite resistance protein TehB; Provisional	99.03
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.01
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.01
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.0
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.0
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.0
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.0
PRK06922	677	hypothetical protein; Provisional	98.99
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.99
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.98
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.96
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.95
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.95
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.94
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.93
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.93
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.93
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.93
PRK05785	226	hypothetical protein; Provisional	98.91
KOG2899	288	consensus Predicted methyltransferase [General fun	98.91
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.89
PLN02336	475	phosphoethanolamine N-methyltransferase	98.89
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.89
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.88
TIGR03438	301	probable methyltransferase. This model represents	98.88
KOG4300	252	consensus Predicted methyltransferase [General fun	98.87
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.87
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.86
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.85
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.83
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.81
KOG2904	328	consensus Predicted methyltransferase [General fun	98.8
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.79
KOG3010	261	consensus Methyltransferase [General function pred	98.78
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.78
PRK06202	232	hypothetical protein; Provisional	98.75
KOG1271	227	consensus Methyltransferases [General function pre	98.75
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.74
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.72
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.68
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.67
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.67
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.66
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.66
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.65
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.65
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.62
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.61
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.6
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.56
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.55
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.53
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.52
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.51
COG2520	341	Predicted methyltransferase [General function pred	98.49
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.49
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.44
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.44
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.44
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.43
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.42
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.42
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.38
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.38
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.35
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.27
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.27
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.26
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.25
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.25
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.23
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.22
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.22
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.21
PRK10742	250	putative methyltransferase; Provisional	98.2
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.19
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.17
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.15
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	98.15
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.13
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.1
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.08
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.07
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.06
KOG2940	325	consensus Predicted methyltransferase [General fun	98.06
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.06
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.03
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.0
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.99
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.99
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.96
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.94
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.93
COG4076	252	Predicted RNA methylase [General function predicti	97.9
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.87
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.85
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.82
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.8
PRK04148	134	hypothetical protein; Provisional	97.79
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.74
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.63
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.62
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.58
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.57
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.5
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.49
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.48
KOG2730	263	consensus Methylase [General function prediction o	97.46
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.39
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.38
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.38
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.35
KOG2361	264	consensus Predicted methyltransferase [General fun	97.34
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.28
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.28
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.26
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	97.25
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.13
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.12
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.02
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.0
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.97
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.96
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.93
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.92
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.89
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.86
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.86
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.81
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.79
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.73
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.69
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.55
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.52
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.51
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.4
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.31
PF13679	141	Methyltransf_32: Methyltransferase domain	96.28
COG0286	489	HsdM Type I restriction-modification system methyl	96.27
PRK11524	284	putative methyltransferase; Provisional	96.26
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.25
KOG3115	249	consensus Methyltransferase-like protein [General	96.22
COG3897	218	Predicted methyltransferase [General function pred	96.07
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.06
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.05
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.0
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	96.0
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	95.99
PTZ00357	1072	methyltransferase; Provisional	95.98
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.97
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	95.64
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.38
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.26
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	95.2
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.18
PRK13699	227	putative methylase; Provisional	95.12
PHA01634	156	hypothetical protein	95.06
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.06
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.04
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	94.96
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.89
COG1568	354	Predicted methyltransferases [General function pre	94.81
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	94.76
COG4121	252	Uncharacterized conserved protein [Function unknow	94.73
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.63
KOG1501	636	consensus Arginine N-methyltransferase [General fu	94.62
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	94.55
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	94.41
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.3
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	94.27
COG2961	279	ComJ Protein involved in catabolism of external DN	94.25
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.15
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	93.98
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.85
KOG2078	495	consensus tRNA modification enzyme [RNA processing	93.65
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.51
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.41
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.36
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	93.23
KOG4058	199	consensus Uncharacterized conserved protein [Funct	93.04
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.04
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.95
PRK11524	284	putative methyltransferase; Provisional	92.91
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	92.84
KOG3201	201	consensus Uncharacterized conserved protein [Funct	92.41
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.4
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	92.38
PF14314	675	Methyltrans_Mon: Virus-capping methyltransferase	92.34
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.3
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	92.19
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.18
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	92.14
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	92.09
PLN02353	473	probable UDP-glucose 6-dehydrogenase	92.01
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.96
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	91.85
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	91.84
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	91.81
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	91.62
PF03269	177	DUF268: Caenorhabditis protein of unknown function	91.41
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	91.25
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.23
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	91.22
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	91.14
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	91.1
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	91.05
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	91.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	91.0
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	90.97
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	90.81
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	90.77
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	90.76
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.6
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.6
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.58
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	90.51
TIGR01627	225	A_thal_3515 uncharacterized plant-specific domain	90.39
PRK13699	227	putative methylase; Provisional	90.37
PRK10637	457	cysG siroheme synthase; Provisional	90.36
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.31
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	90.25
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.23
PRK15076	431	alpha-galactosidase; Provisional	90.22
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	90.19
PLN02494	477	adenosylhomocysteinase	90.16
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	90.03
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	90.01
PRK10458	467	DNA cytosine methylase; Provisional	89.93
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	89.81
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	89.77
KOG1227	351	consensus Putative methyltransferase [General func	89.71
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	89.67
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	89.49
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	89.47
COG4017	254	Uncharacterized protein conserved in archaea [Func	89.43
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	89.3
PTZ00117	319	malate dehydrogenase; Provisional	89.29
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.27
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	89.25
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	89.24
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	89.14
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	89.1
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.02
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	88.92
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	88.9
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	88.8
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	88.79
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	88.71
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	88.69
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	88.67
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	88.46
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	88.41
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	88.35
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.33
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	88.31
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	88.18
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	88.13
PRK06719	157	precorrin-2 dehydrogenase; Validated	88.05
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.92
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	87.87
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	87.79
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	87.77
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	87.72
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	87.57
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	87.38
PRK08618	325	ornithine cyclodeaminase; Validated	87.37
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	87.34
PTZ00082	321	L-lactate dehydrogenase; Provisional	87.2
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	86.58
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	86.53
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	86.52
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	86.5
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	86.43
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	86.28
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	86.22
PRK09496	453	trkA potassium transporter peripheral membrane com	86.2
PLN02740	381	Alcohol dehydrogenase-like	86.13
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	86.13
PRK08306	296	dipicolinate synthase subunit A; Reviewed	86.11
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	85.93
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	85.75
COG1565	370	Uncharacterized conserved protein [Function unknow	85.71
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	85.69
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	85.63
KOG2671	421	consensus Putative RNA methylase [Replication, rec	85.63
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	85.57
PLN02827	378	Alcohol dehydrogenase-like	85.47
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	85.36
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	85.22
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	85.17
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	84.68
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	84.39
PRK07340	304	ornithine cyclodeaminase; Validated	84.3
PRK08328	231	hypothetical protein; Provisional	84.2
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	84.01
PRK03562	621	glutathione-regulated potassium-efflux system prot	83.9
TIGR00497	501	hsdM type I restriction system adenine methylase (	83.84
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	83.81
PRK06223	307	malate dehydrogenase; Reviewed	83.72
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	83.71
PRK07904	253	short chain dehydrogenase; Provisional	83.68
KOG1331	293	consensus Predicted methyltransferase [General fun	83.65
PLN02256	304	arogenate dehydrogenase	83.65
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	83.63
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	83.58
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	83.42
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	83.4
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	83.35
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	83.27
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	83.21
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	83.2
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	82.96
PRK06141	314	ornithine cyclodeaminase; Validated	82.88
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	82.76
PRK07417	279	arogenate dehydrogenase; Reviewed	82.67
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	82.63
PRK03659	601	glutathione-regulated potassium-efflux system prot	82.42
PRK06046	326	alanine dehydrogenase; Validated	82.4
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	82.31
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	82.19
PRK07102	243	short chain dehydrogenase; Provisional	82.19
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	82.13
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	81.63
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	81.56
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	81.53
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	81.5
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	81.39
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	81.24
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	81.06
PRK12548	289	shikimate 5-dehydrogenase; Provisional	80.97
COG0569	225	TrkA K+ transport systems, NAD-binding component [	80.85
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	80.77
PRK06194	287	hypothetical protein; Provisional	80.74
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	80.61
PRK08507	275	prephenate dehydrogenase; Validated	80.18
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	80.03
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	80.01

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=100.00  E-value=2.6e-47  Score=332.34  Aligned_cols=222  Identities=45%  Similarity=0.790  Sum_probs=203.4

Q ss_pred             CeEEeeec---cccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeE
Q 025141           30 CWYEEEIE---ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (257)
Q Consensus        30 ~w~~~~~~---~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~V  106 (257)
                      .||+|..+   ++.+..|++++++++.+|+||+|.|++++.+|++|++||.+|+++++++.|||+|+|+|++.+++|++|
T Consensus         1 ~w~~e~~~~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~V   80 (246)
T PF01564_consen    1 MWFTEYYSQFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRV   80 (246)
T ss_dssp             TEEEEEET-TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EE
T ss_pred             CeEEEEeccCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCce
Confidence            59999998   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC-ceeEEEEcCCC
Q 025141          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLAD  185 (257)
Q Consensus       107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~-~fDvIi~D~~~  185 (257)
                      |+||+|+|+++++++++++..+||+|||||.|+++|+++|+.....+.+||++++++||+.|+++..+ +||+|++|+++
T Consensus        81 LiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d  160 (246)
T PF01564_consen   81 LIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD  160 (246)
T ss_dssp             EEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS
T ss_pred             EEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC
Confidence            99999999999999999878899999999999999999998654447899999999999999999887 99999999999


Q ss_pred             CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCcccc
Q 025141          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFF  256 (257)
Q Consensus       186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~~  256 (257)
                      |.  .+...|+++|||+. ++++|+|||++++|.+++  +.....++.+.++++++|+++.+|....|+|.
T Consensus       161 p~--~~~~~l~t~ef~~~-~~~~L~~~Gv~v~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~  226 (246)
T PF01564_consen  161 PD--GPAPNLFTREFYQL-CKRRLKPDGVLVLQAGSP--FLHPELFKSILKTLRSVFPQVKPYTAYVPSYG  226 (246)
T ss_dssp             TT--SCGGGGSSHHHHHH-HHHHEEEEEEEEEEEEET--TTTHHHHHHHHHHHHTTSSEEEEEEEECTTSC
T ss_pred             CC--CCcccccCHHHHHH-HHhhcCCCcEEEEEccCc--ccchHHHHHHHHHHHHhCCceEEEEEEcCeec
Confidence            76  44456999999999 799999999999999777  56788999999999999999999999877764

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PLN02823 spermine synthase

Probab=100.00  E-value=9.5e-47  Score=341.07  Aligned_cols=252  Identities=73%  Similarity=1.190  Sum_probs=217.9

Q ss_pred             ceeeecCCcccccCCccCcCC-CCccccCeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCccccc
Q 025141            3 EISCSNGISQANGADAKNVAL-TGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSA   81 (257)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~   81 (257)
                      ||--.||.|..........+. ..+..+.|+.|...++.+..+.++++|++.+|+||+|+|++++.+|++|++||..|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~   82 (336)
T PLN02823          3 EIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSA   82 (336)
T ss_pred             ceeccCCcccccCCCCcccccccccccCeeEeeccCCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccc
Confidence            566677776543221111111 1223668999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE
Q 025141           82 EVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV  161 (257)
Q Consensus        82 ~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~  161 (257)
                      +.+++.|||+|+|+|++.+++|++||+||+|+|+++++++++++..+|++||||++++++||++|+.+...+.+||++++
T Consensus        83 ~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~  162 (336)
T PLN02823         83 EADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI  162 (336)
T ss_pred             cchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE
Confidence            99999999999999999999999999999999999999999877789999999999999999999876556789999999


Q ss_pred             EcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHH-HHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025141          162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE-FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (257)
Q Consensus       162 ~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~-~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~  240 (257)
                      ++||++|++...++||+|++|+++|...+|+.+|++.|||+ . ++++|+|||++++|.+++..+...+.++.++++|++
T Consensus       163 ~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~-~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~  241 (336)
T PLN02823        163 INDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERI-VKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ  241 (336)
T ss_pred             EChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHH-HHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence            99999999887889999999999876545667899999998 8 799999999999998876545567789999999999


Q ss_pred             hCCceEEEeecCccc
Q 025141          241 VFKCGCCALFSSYSF  255 (257)
Q Consensus       241 ~F~~v~~~~~~~~~~  255 (257)
                      +||+|.+|....|+|
T Consensus       242 vF~~v~~y~~~vPsf  256 (336)
T PLN02823        242 VFKYVVPYTAHVPSF  256 (336)
T ss_pred             hCCCEEEEEeecCCC
Confidence            999999998644433

>PRK00536 speE spermidine synthase; Provisional

Probab=100.00  E-value=3.2e-45  Score=319.89  Aligned_cols=202  Identities=17%  Similarity=0.206  Sum_probs=182.8

Q ss_pred             CeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEE
Q 025141           30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIM  109 (257)
Q Consensus        30 ~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~I  109 (257)
                      .|++|..+++.+.+++++++|++++|+||+|.|+++..+||+|.|| ..|+++.||+.|||||+|+|++.||+|++||+|
T Consensus         1 ~w~~e~~~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIi   79 (262)
T PRK00536          1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIV   79 (262)
T ss_pred             CceEEecCCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEE
Confidence            4999999999999999999999999999999999999999999999 555689999999999999999999999999999


Q ss_pred             eccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCC
Q 025141          110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG  189 (257)
Q Consensus       110 G~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~  189 (257)
                      |+|+|+++|+++||+  .+|+.||||++|++++|+|++....+++|||++++.    .+.+...++||+||+|..     
T Consensus        80 GGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~----~~~~~~~~~fDVIIvDs~-----  148 (262)
T PRK00536         80 DGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK----QLLDLDIKKYDLIICLQE-----  148 (262)
T ss_pred             cCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee----hhhhccCCcCCEEEEcCC-----
Confidence            999999999999996  399999999999999999998555579999999997    233333478999999953     


Q ss_pred             CcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecC
Q 025141          190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSS  252 (257)
Q Consensus       190 ~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~  252 (257)
                            ++++||+. ++++|+|||++++|.++|  +...+.++.+.++++++|+.+.+|...-
T Consensus       149 ------~~~~fy~~-~~~~L~~~Gi~v~Qs~sp--~~~~~~~~~i~~~l~~~F~~v~~y~~~v  202 (262)
T PRK00536        149 ------PDIHKIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGDFFSIAMPFVAPL  202 (262)
T ss_pred             ------CChHHHHH-HHHhcCCCcEEEECCCCc--ccCHHHHHHHHHHHHhhCCceEEEEecC
Confidence                  35799999 799999999999999998  6678899999999999999999997643

>PLN02366 spermidine synthase

Probab=100.00  E-value=1e-44  Score=324.78  Aligned_cols=220  Identities=33%  Similarity=0.618  Sum_probs=199.6

Q ss_pred             CccccCeEEee--eccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCC
Q 025141           25 GYRKSCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN  102 (257)
Q Consensus        25 ~~~~~~w~~~~--~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~  102 (257)
                      ....+.|+.|.  .+++.+.+++++++|++.+|+||+|.|++++.+|++|++||.+|+++++++.||++++|+|++.+++
T Consensus        12 ~~~~~~w~~e~~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~   91 (308)
T PLN02366         12 STVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPN   91 (308)
T ss_pred             chhhhceEeecccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCC
Confidence            35568999987  3577889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEE
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIG  181 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~  181 (257)
                      +++||+||||+|++++++++++++.+|++||||+++++.||++|+.....+++||++++++||++|++.. +++||+|++
T Consensus        92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~  171 (308)
T PLN02366         92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV  171 (308)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence            9999999999999999999998788999999999999999999974333468999999999999999875 578999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC-CceEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF-KCGCCAL  249 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F-~~v~~~~  249 (257)
                      |+++|.  +|...|++.+||+. ++++|+|||++++|.+++  |...+.++.+.++|+++| +.+.+|.
T Consensus       172 D~~dp~--~~~~~L~t~ef~~~-~~~~L~pgGvlv~q~~s~--~~~~~~~~~i~~tl~~~F~~~v~~~~  235 (308)
T PLN02366        172 DSSDPV--GPAQELFEKPFFES-VARALRPGGVVCTQAESM--WLHMDLIEDLIAICRETFKGSVNYAW  235 (308)
T ss_pred             cCCCCC--CchhhhhHHHHHHH-HHHhcCCCcEEEECcCCc--ccchHHHHHHHHHHHHHCCCceeEEE
Confidence            999886  55678999999999 799999999999999877  777889999999999999 4666654

>PRK00811 spermidine synthase; Provisional

Probab=100.00  E-value=9.3e-45  Score=322.57  Aligned_cols=218  Identities=40%  Similarity=0.735  Sum_probs=201.1

Q ss_pred             cCeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEE
Q 025141           29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI  108 (257)
Q Consensus        29 ~~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~  108 (257)
                      +.|+.|..+++.+..+..+++|++++|+||+|.|++++++|++|++||..|+++.+++.|||+++|+|++.++++++||+
T Consensus         3 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL~   82 (283)
T PRK00811          3 ELWFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLI   82 (283)
T ss_pred             CcceeeccCCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCC
Q 025141          109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI  187 (257)
Q Consensus       109 IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~  187 (257)
                      ||||+|+++++++++++..+|++||+|++++++|+++|+. ..+.+.+||++++++|+++|++...++||+|++|+++|.
T Consensus        83 iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~  162 (283)
T PRK00811         83 IGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPV  162 (283)
T ss_pred             EecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCC
Confidence            9999999999999987778999999999999999999973 333346899999999999999887789999999999886


Q ss_pred             CCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeec
Q 025141          188 EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFS  251 (257)
Q Consensus       188 ~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~  251 (257)
                        .|..+|++.+||+. ++++|+|||++++|.++|  +.....++++.++|+++|++|.+|...
T Consensus       163 --~~~~~l~t~ef~~~-~~~~L~~gGvlv~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~  221 (283)
T PRK00811        163 --GPAEGLFTKEFYEN-CKRALKEDGIFVAQSGSP--FYQADEIKDMHRKLKEVFPIVRPYQAA  221 (283)
T ss_pred             --CchhhhhHHHHHHH-HHHhcCCCcEEEEeCCCc--ccCHHHHHHHHHHHHHHCCCEEEEEeE
Confidence              55568999999999 799999999999998877  556788999999999999999999863

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-44  Score=318.57  Aligned_cols=221  Identities=40%  Similarity=0.718  Sum_probs=205.4

Q ss_pred             ccCeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEE
Q 025141           28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF  107 (257)
Q Consensus        28 ~~~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL  107 (257)
                      ...|+.|..+++.+..+++++++++++|+||.|.+++++.+|+.|.+||..|+++.+++.||||++|+|++.|++|++||
T Consensus         2 ~~~w~~e~~~~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VL   81 (282)
T COG0421           2 ADMWFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVL   81 (282)
T ss_pred             CccceeeeecccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEE
Confidence            46899999988999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCC
Q 025141          108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI  187 (257)
Q Consensus       108 ~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~  187 (257)
                      +||+|+|++++++++|.+.+++++|||||+|+++||++|+....+..|||++++++||++|++...++||+||+|.++|.
T Consensus        82 iiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~  161 (282)
T COG0421          82 IIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV  161 (282)
T ss_pred             EECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCC
Confidence            99999999999999999899999999999999999999986543334899999999999999998889999999999984


Q ss_pred             CCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCc
Q 025141          188 EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSY  253 (257)
Q Consensus       188 ~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~  253 (257)
                        +|+..|++.+||+. ++++|+|+|++++|+++|  |.+.+....+.+.++++|+.+.+|....+
T Consensus       162 --gp~~~Lft~eFy~~-~~~~L~~~Gi~v~q~~~~--~~~~~~~~~~~~~~~~vf~~~~~~~~~ip  222 (282)
T COG0421         162 --GPAEALFTEEFYEG-CRRALKEDGIFVAQAGSP--FLQDEEIALAYRNVSRVFSIVPPYVAPIP  222 (282)
T ss_pred             --CcccccCCHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhhccccccceeccc
Confidence              78789999999999 699999999999998887  67778889999999999999988776443

>TIGR00417 speE spermidine synthase

Probab=100.00  E-value=4.3e-41  Score=297.30  Aligned_cols=217  Identities=37%  Similarity=0.727  Sum_probs=199.1

Q ss_pred             eEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEe
Q 025141           31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMG  110 (257)
Q Consensus        31 w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG  110 (257)
                      |+.|..+++.+..+.++++|++.+|+||+|.|++++++|++|++||..|+++.+++.|+++++|++++.+++|++||+||
T Consensus         1 w~~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG   80 (270)
T TIGR00417         1 WFTEYHDKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIG   80 (270)
T ss_pred             CceeecCCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCC
Q 025141          111 GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGG  190 (257)
Q Consensus       111 ~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~  190 (257)
                      ||+|+++++++++.+..++++||+|+++++.++++++.....+.+++++++++|++++++...++||+|++|++++.  .
T Consensus        81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~--~  158 (270)
T TIGR00417        81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPV--G  158 (270)
T ss_pred             CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCC--C
Confidence            99999999999987678999999999999999999875434467899999999999999887889999999998775  4


Q ss_pred             cccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecC
Q 025141          191 PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSS  252 (257)
Q Consensus       191 p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~  252 (257)
                      +...|++.+|++. ++++|+|||+++++..+|  +...+.+..+.++++++|+++.+|....
T Consensus       159 ~~~~l~~~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~tl~~~F~~v~~~~~~v  217 (270)
T TIGR00417       159 PAETLFTKEFYEL-LKKALNEDGIFVAQSESP--WIQLELITDLKRDVKEAFPITEYYTANI  217 (270)
T ss_pred             cccchhHHHHHHH-HHHHhCCCcEEEEcCCCc--ccCHHHHHHHHHHHHHHCCCeEEEEEEc
Confidence            5567999999999 799999999999997766  5678889999999999999999998743

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01581 speE spermidine synthase; Validated

Probab=100.00  E-value=2.2e-40  Score=299.04  Aligned_cols=242  Identities=32%  Similarity=0.455  Sum_probs=198.8

Q ss_pred             eeecCCc-----ccccCCccCcCCC-Ccccc--CeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcC
Q 025141            5 SCSNGIS-----QANGADAKNVALT-GYRKS--CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDG   76 (257)
Q Consensus         5 ~~~~~~~-----~~~~~~~~~~~~~-~~~~~--~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG   76 (257)
                      +-+.||.     |-|...+|||-+- .....  .|-  +.+ ...+..+..++|++++|+||+|.|+++.++  .|++||
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG  124 (374)
T PRK01581         50 KQDRGIQYAETKQDNQVQSENVVIVPTDSHNLDIWD--EIS-LKEIQAGEHTNLFAEKSNYQNINLLQVSDI--RLYLDK  124 (374)
T ss_pred             eeccCceeccCCccchhhccceEEeecCCCchhhhh--HHH-HHHHhhcccCEEEecCCCCceEEEEEcCCE--EEEECC
Confidence            3455664     4466667776542 22222  232  222 112223456899999999999999999976  699999


Q ss_pred             cccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh---hccCCC
Q 025141           77 KLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAF  153 (257)
Q Consensus        77 ~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~---~~~~~~  153 (257)
                      .+|+++.||+.|||+++|+|++.+++|++||+||||+|++++++++++++.+|++||||++|+++|++++.   .+...+
T Consensus       125 ~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~  204 (374)
T PRK01581        125 QLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF  204 (374)
T ss_pred             eeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence            99999999999999999999999999999999999999999999999878899999999999999998643   334556


Q ss_pred             CCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHH
Q 025141          154 SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC  233 (257)
Q Consensus       154 ~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~  233 (257)
                      .+||++++++||++|++...++||+|++|+++|.. .+...|++.+||+. ++++|+|||+++++.++|  +..+..++.
T Consensus       205 ~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~-~~~~~LyT~EFy~~-~~~~LkPgGV~V~Qs~sp--~~~~~~~~~  280 (374)
T PRK01581        205 FDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPAT-ELLSTLYTSELFAR-IATFLTEDGAFVCQSNSP--ADAPLVYWS  280 (374)
T ss_pred             CCCceEEEECcHHHHHHhcCCCccEEEEcCCCccc-cchhhhhHHHHHHH-HHHhcCCCcEEEEecCCh--hhhHHHHHH
Confidence            79999999999999998888899999999988763 23468999999999 799999999999998877  556777889


Q ss_pred             HHHHHhhhCCceEEEeecCccc
Q 025141          234 IYNTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       234 ~~~~l~~~F~~v~~~~~~~~~~  255 (257)
                      +.++|+++|+.+.+|.+.-++|
T Consensus       281 i~~tL~~af~~v~~y~t~vPsy  302 (374)
T PRK01581        281 IGNTIEHAGLTVKSYHTIVPSF  302 (374)
T ss_pred             HHHHHHHhCCceEEEEEecCCC
Confidence            9999999999999998865443

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=100.00  E-value=1.7e-36  Score=268.85  Aligned_cols=210  Identities=31%  Similarity=0.486  Sum_probs=187.8

Q ss_pred             ceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHH
Q 025141           41 RWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI  120 (257)
Q Consensus        41 ~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l  120 (257)
                      ++.+-.++|||..+|+||+|.|.+..+. ..|++||..|.+.+||..|||.++++++...+..++||++|+|+|..+|++
T Consensus       229 eqqlygdeIIh~~qspYQ~iVvTr~g~d-~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRel  307 (508)
T COG4262         229 EQQLYGDEIIHAIQSPYQRIVVTRRGDD-LRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALREL  307 (508)
T ss_pred             HHHhhcCceeeeccCccceEEEEEecCc-eEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHH
Confidence            3445578999999999999999998763 789999999999999999999999999877788899999999999999999


Q ss_pred             HhcCCCcEEEEEECCHHHHHHHHhhh---hhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCch
Q 025141          121 LRHKTVEKVVMCDIDEEVVEFCKSYL---VVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYT  197 (257)
Q Consensus       121 ~~~~~~~~v~~VEid~~vi~~a~~~~---~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t  197 (257)
                      +++|+..+|+.||+||+|++.+++..   ..|++++.|||+++++.||.+|+++..+.||+||+|.+||.... ...+|+
T Consensus       308 lkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps-~~rlYS  386 (508)
T COG4262         308 LKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPS-IGRLYS  386 (508)
T ss_pred             HhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcc-hhhhhh
Confidence            99988999999999999999999663   36778899999999999999999999999999999999987533 369999


Q ss_pred             HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCccc
Q 025141          198 KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       198 ~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~  255 (257)
                      .|||.. ++++|+++|++++|.++|  +..++.++++.+|+|++--.+.||..--|.|
T Consensus       387 ~eFY~l-l~~~l~e~Gl~VvQags~--y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTF  441 (508)
T COG4262         387 VEFYRL-LSRHLAETGLMVVQAGSP--YFTPRVFWRIDATIKSAGYRVWPYHVHVPTF  441 (508)
T ss_pred             HHHHHH-HHHhcCcCceEEEecCCC--ccCCceeeeehhHHHhCcceeeeeEEecCcc
Confidence            999999 899999999999999998  7889999999999999877777776544333

>PRK03612 spermidine synthase; Provisional

Probab=100.00  E-value=1.3e-35  Score=283.70  Aligned_cols=220  Identities=32%  Similarity=0.524  Sum_probs=188.8

Q ss_pred             eEEeeeccccceeeeeccEEEEeecCCCcEEEEEecC-Ce--eEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEE
Q 025141           31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKP-FG--KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF  107 (257)
Q Consensus        31 w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~-~g--~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL  107 (257)
                      |..+.........+..++++++++|+||+|.|+++++ +|  +.|++||.+|.++.|++.|||+++|++++.++++++||
T Consensus       223 ~~~~~~~~~~~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL  302 (521)
T PRK03612        223 VLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVL  302 (521)
T ss_pred             HcccchhhHHHhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEE
Confidence            4444443344455667899999999999999999876 35  88999999999999999999999999999999999999


Q ss_pred             EEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhh--h-hccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025141          108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL--V-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (257)
Q Consensus       108 ~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~--~-~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~  184 (257)
                      +||||+|.+++++++++++.+|++||+||++++.+|+++  + .+...+++||++++++|++++++..+++||+|++|++
T Consensus       303 ~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~  382 (521)
T PRK03612        303 VLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLP  382 (521)
T ss_pred             EEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCC
Confidence            999999999999999876689999999999999999954  3 3444567899999999999999887789999999998


Q ss_pred             CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEeecCccc
Q 025141          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALFSSYSF  255 (257)
Q Consensus       185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~~~~~  255 (257)
                      ++.... ..+++++||++. ++++|+|||++++|..+|  +.+.+.++++.++++++ | .+.+|....++|
T Consensus       383 ~~~~~~-~~~L~t~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~  449 (521)
T PRK03612        383 DPSNPA-LGKLYSVEFYRL-LKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAAGL-ATTPYHVNVPSF  449 (521)
T ss_pred             CCCCcc-hhccchHHHHHH-HHHhcCCCeEEEEecCCc--ccchHHHHHHHHHHHHcCC-EEEEEEeCCCCc
Confidence            875322 258999999999 799999999999999877  56788899999999999 8 888888766665

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.6e-36  Score=260.68  Aligned_cols=230  Identities=31%  Similarity=0.581  Sum_probs=211.6

Q ss_pred             CCCCccccCeEEeeec-----cccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHH
Q 025141           22 ALTGYRKSCWYEEEIE-----ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPA   96 (257)
Q Consensus        22 ~~~~~~~~~w~~~~~~-----~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~   96 (257)
                      +..+...++||.|...     |+...++.++++++.++|.||++.|+++..+|++|.+||..|+++++++.|+||++|+|
T Consensus        36 s~h~~i~~GwF~e~~~~~~i~pg~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~  115 (337)
T KOG1562|consen   36 SSHPSIENGWFAEIHNKKDIWPGQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLA  115 (337)
T ss_pred             cccCcccCCeEeeecCCCCCCCCceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccc
Confidence            5567788999998876     37888999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCc
Q 025141           97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KES  175 (257)
Q Consensus        97 l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~  175 (257)
                      ++.+++|++||+||+|+|+..++..+|+.+..++.+|||..+++..++|++....++.++++.++.+|+..|++.. .++
T Consensus       116 l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~  195 (337)
T KOG1562|consen  116 LCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP  195 (337)
T ss_pred             cccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence            9999999999999999999999999999899999999999999999999986555699999999999999999987 689


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEee--cCc
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALF--SSY  253 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~--~~~  253 (257)
                      ||+||+|..+|.  +|+..+|.+.+|+. +++.||+||+++++..+.  |.+.+..++..+..+.+|+.+....+  ++|
T Consensus       196 ~dVii~dssdpv--gpa~~lf~~~~~~~-v~~aLk~dgv~~~q~ec~--wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTy  270 (337)
T KOG1562|consen  196 FDVIITDSSDPV--GPACALFQKPYFGL-VLDALKGDGVVCTQGECM--WLHLDYIKEGRSFCYVIFDLTAYAITTVPTY  270 (337)
T ss_pred             ceEEEEecCCcc--chHHHHHHHHHHHH-HHHhhCCCcEEEEeccee--hHHHHHHHHHHHhHHHhcCccceeeecCCCC
Confidence            999999999987  78779999999999 899999999999998765  88899999999999999998776665  566


Q ss_pred             ccc
Q 025141          254 SFF  256 (257)
Q Consensus       254 ~~~  256 (257)
                      .|+
T Consensus       271 psg  273 (337)
T KOG1562|consen  271 PSG  273 (337)
T ss_pred             ccc
Confidence            654

>PRK04457 spermidine synthase; Provisional

Probab=99.95  E-value=5.8e-27  Score=206.26  Aligned_cols=183  Identities=22%  Similarity=0.383  Sum_probs=149.8

Q ss_pred             EEEeecCCCcEEEEEecCCeeEEEEcCc-cccc----CCC--chhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHh
Q 025141           50 LHTGETRYQDIALLDTKPFGKALVIDGK-LQSA----EVD--EFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILR  122 (257)
Q Consensus        50 l~~~~s~~~~i~v~~~~~~g~~L~ldG~-~~~~----~~~--~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~  122 (257)
                      +...++.|+.|.|+|... .|+|.+|+. .|+.    .|.  .+.|+++|. ..+...+++++||+||+|+|.+++.+++
T Consensus         9 ~~~~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~-~~l~~~~~~~~vL~IG~G~G~l~~~l~~   86 (262)
T PRK04457          9 LRPAKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMM-GFLLFNPRPQHILQIGLGGGSLAKFIYT   86 (262)
T ss_pred             hccccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHH-HHHhcCCCCCEEEEECCCHhHHHHHHHH
Confidence            334577899999999986 489999884 6765    233  346888776 3445567889999999999999999988


Q ss_pred             cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHH
Q 025141          123 HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE  202 (257)
Q Consensus       123 ~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~  202 (257)
                      +.+..+|++||+||++++.|+++|..+.   .++|++++++|+++++....++||+|++|.+++.  .++.++.+.+|++
T Consensus        87 ~~p~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~--~~~~~l~t~efl~  161 (262)
T PRK04457         87 YLPDTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGE--GIIDALCTQPFFD  161 (262)
T ss_pred             hCCCCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCC--CCccccCcHHHHH
Confidence            7666799999999999999999987653   3689999999999999877789999999998654  2335788999999


Q ss_pred             HHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCce
Q 025141          203 FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG  245 (257)
Q Consensus       203 ~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v  245 (257)
                      . ++++|+|||++++|.     +.....+..++++++++|+++
T Consensus       162 ~-~~~~L~pgGvlvin~-----~~~~~~~~~~l~~l~~~F~~~  198 (262)
T PRK04457        162 D-CRNALSSDGIFVVNL-----WSRDKRYDRYLERLESSFEGR  198 (262)
T ss_pred             H-HHHhcCCCcEEEEEc-----CCCchhHHHHHHHHHHhcCCc
Confidence            9 799999999999985     233445778899999999863

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.74  E-value=7e-17  Score=136.75  Aligned_cols=170  Identities=22%  Similarity=0.276  Sum_probs=135.1

Q ss_pred             eEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc
Q 025141           70 KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN  149 (257)
Q Consensus        70 ~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~  149 (257)
                      -++.+||..|.....+.++.+++.-+.+....+.++|||.+.|-|.++.++++. +..+|..||.||.|+++|+-+ +++
T Consensus       102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lN-PwS  179 (287)
T COG2521         102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLN-PWS  179 (287)
T ss_pred             CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccC-CCC
Confidence            468899987765555556777776666554456899999999999999999995 556999999999999999876 333


Q ss_pred             cCCCCCCCeEEEEcchHHHHhcCC-CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCC-CCC
Q 025141          150 KEAFSDPRLELVINDARAELESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI-FSH  227 (257)
Q Consensus       150 ~~~~~~~rv~i~~~Da~~~l~~~~-~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~-~~~  227 (257)
                      .+ +.+.+++++.+|+.+.++.-+ +.||+||.|++.-.   .+.+||+.+||++ +.++|+|||.+.-..+.|+. ...
T Consensus       180 r~-l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS---~AgeLYseefY~E-l~RiLkrgGrlFHYvG~Pg~ryrG  254 (287)
T COG2521         180 RE-LFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFS---LAGELYSEEFYRE-LYRILKRGGRLFHYVGNPGKRYRG  254 (287)
T ss_pred             cc-ccccccEEecccHHHHHhcCCccccceEeeCCCccc---hhhhHhHHHHHHH-HHHHcCcCCcEEEEeCCCCccccc
Confidence            32 235689999999999998865 67999999998532   2358999999999 89999999999988888863 334


Q ss_pred             hHHHHHHHHHHhhh-CCceE
Q 025141          228 TEVFSCIYNTLRQV-FKCGC  246 (257)
Q Consensus       228 ~~~~~~~~~~l~~~-F~~v~  246 (257)
                      ....+.+.+.|+++ |..|.
T Consensus       255 ~d~~~gVa~RLr~vGF~~v~  274 (287)
T COG2521         255 LDLPKGVAERLRRVGFEVVK  274 (287)
T ss_pred             CChhHHHHHHHHhcCceeee
Confidence            56788999999998 65444

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.64  E-value=7.4e-16  Score=117.52  Aligned_cols=110  Identities=20%  Similarity=0.192  Sum_probs=85.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++++||+||||+|.++.++++..+..+|++||++|++++.|++++....   ..+|++++++|+ .+.....++||+|++
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~~~~~D~v~~   76 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDFLEPFDLVIC   76 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTTSSCEEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCcccCCCCCEEEE
Confidence            3579999999999999999994345799999999999999999984332   468999999999 555555678999999


Q ss_pred             cC-CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          182 DL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       182 D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .. ....  .+. .-...++++. +++.|+|||+++++.
T Consensus        77 ~~~~~~~--~~~-~~~~~~~l~~-~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   77 SGFTLHF--LLP-LDERRRVLER-IRRLLKPGGRLVINT  111 (112)
T ss_dssp             CSGSGGG--CCH-HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CCCcccc--ccc-hhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            87 2111  010 1123578898 799999999999863

...

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.57  E-value=1.8e-14  Score=110.72  Aligned_cols=111  Identities=26%  Similarity=0.363  Sum_probs=85.7

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEEc
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGD  182 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi~D  182 (257)
                      .+|||+|||+|.++..+++.. ..+++++|+||..+++++++++...   ..++++++++|.++.... ..++||+|++|
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG---LDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT---TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc---CCceEEEEECchhhchhhccCceeEEEEEC
Confidence            589999999999999999976 5799999999999999999988653   356899999999998843 45889999999


Q ss_pred             CCCCCC--CCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          183 LADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       183 ~~~~~~--~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++-...  ......-...+|++. +.+.|+|||++++..
T Consensus        78 pP~~~~~~~~~~~~~~~~~~~~~-~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   78 PPYGPRSGDKAALRRLYSRFLEA-AARLLKPGGVLVFIT  115 (117)
T ss_dssp             -STTSBTT----GGCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CCCccccccchhhHHHHHHHHHH-HHHHcCCCeEEEEEe
Confidence            974221  011112235689998 799999999998753

...

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.54  E-value=1.3e-13  Score=119.41  Aligned_cols=132  Identities=20%  Similarity=0.294  Sum_probs=104.8

Q ss_pred             cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-Ccee
Q 025141           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYD  177 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-~~fD  177 (257)
                      ..+..++|||||+|.|.++..+++..+..+|++||+++++.+.|+++..++.   -.+|++++++|..++.+... .+||
T Consensus        41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~---l~~ri~v~~~Di~~~~~~~~~~~fD  117 (248)
T COG4123          41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP---LEERIQVIEADIKEFLKALVFASFD  117 (248)
T ss_pred             ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc---chhceeEehhhHHHhhhcccccccC
Confidence            3345789999999999999999997555799999999999999999998764   46899999999999987765 4699


Q ss_pred             EEEEcCCC--CCCC---Cc-------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          178 VIIGDLAD--PIEG---GP-------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       178 vIi~D~~~--~~~~---~p-------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      +|+++||-  ....   .+       ...+.-.++++. ++++|||||.+++-       ..++.+.++...|++.
T Consensus       118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~-a~~~lk~~G~l~~V-------~r~erl~ei~~~l~~~  185 (248)
T COG4123         118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRA-AAKLLKPGGRLAFV-------HRPERLAEIIELLKSY  185 (248)
T ss_pred             EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHH-HHHHccCCCEEEEE-------ecHHHHHHHHHHHHhc
Confidence            99999972  1111   11       112334578887 79999999999873       3467788999999983

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.53  E-value=4.4e-14  Score=116.62  Aligned_cols=130  Identities=18%  Similarity=0.210  Sum_probs=93.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ..++|||+|||+|.++..++++.+..+|+++|+++.+++.+++++..++    -++++++..|..+.+.  .++||+|++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~----~~~v~~~~~d~~~~~~--~~~fD~Iv~  104 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG----LENVEVVQSDLFEALP--DGKFDLIVS  104 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT----CTTEEEEESSTTTTCC--TTCEEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC----cccccccccccccccc--ccceeEEEE
Confidence            6789999999999999999998665689999999999999999998763    2239999999877654  589999999


Q ss_pred             cCCCCCCCCcc-cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEe
Q 025141          182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCAL  249 (257)
Q Consensus       182 D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~  249 (257)
                      ++|-..  +.. ......+|++. +++.|+|||.+++-....   ...   .   +.+++.|..+....
T Consensus       105 NPP~~~--~~~~~~~~~~~~i~~-a~~~Lk~~G~l~lv~~~~---~~~---~---~~l~~~f~~~~~~~  161 (170)
T PF05175_consen  105 NPPFHA--GGDDGLDLLRDFIEQ-ARRYLKPGGRLFLVINSH---LGY---E---RLLKELFGDVEVVA  161 (170)
T ss_dssp             ---SBT--TSHCHHHHHHHHHHH-HHHHEEEEEEEEEEEETT---SCH---H---HHHHHHHS--EEEE
T ss_pred             ccchhc--ccccchhhHHHHHHH-HHHhccCCCEEEEEeecC---CCh---H---HHHHHhcCCEEEEE
Confidence            987422  211 12235788998 799999999886543222   111   1   22777777776643

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.48  E-value=1.1e-12  Score=109.96  Aligned_cols=117  Identities=19%  Similarity=0.261  Sum_probs=89.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++....+    -++++++.+|+.++-.  .++||+|+
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~----l~~i~~~~~d~~~~~~--~~~fDlV~  117 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG----LKNVTVVHGRAEEFGQ--EEKFDVVT  117 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC----CCCEEEEeccHhhCCC--CCCccEEE
Confidence            44789999999999999988875455799999999999999999887543    2359999999988533  57899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHH
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL  238 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l  238 (257)
                      ++...    .      -.++++. +.+.|+|||++++..+..    ....+.++...+
T Consensus       118 ~~~~~----~------~~~~l~~-~~~~LkpGG~lv~~~~~~----~~~~l~~~~~~~  160 (187)
T PRK00107        118 SRAVA----S------LSDLVEL-CLPLLKPGGRFLALKGRD----PEEEIAELPKAL  160 (187)
T ss_pred             Ecccc----C------HHHHHHH-HHHhcCCCeEEEEEeCCC----hHHHHHHHHHhc
Confidence            97531    1      2478888 799999999999875332    234444444444

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.48  E-value=1.4e-12  Score=110.65  Aligned_cols=129  Identities=17%  Similarity=0.154  Sum_probs=97.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--cCCCceeEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~--~~~~~fDvI  179 (257)
                      +..+||+||||+|..+..+++..+..+|++||+++.+++.+++.+...+    .++++++++|+.+.+.  ..+++||+|
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~D~V  115 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG----LTNLRLLCGDAVEVLLDMFPDGSLDRI  115 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC----CCCEEEEecCHHHHHHHHcCccccceE
Confidence            5689999999999999999876555689999999999999999876442    3679999999944444  235789999


Q ss_pred             EEcCCCCCCCCcc--cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          180 IGDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       180 i~D~~~~~~~~p~--~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      ++..++++...+.  .......+++. ++++|+|||++++...      ....+..+.+.+++.
T Consensus       116 ~~~~~~p~~~~~~~~~~~~~~~~l~~-i~~~LkpgG~l~i~~~------~~~~~~~~~~~~~~~  172 (202)
T PRK00121        116 YLNFPDPWPKKRHHKRRLVQPEFLAL-YARKLKPGGEIHFATD------WEGYAEYMLEVLSAE  172 (202)
T ss_pred             EEECCCCCCCccccccccCCHHHHHH-HHHHcCCCCEEEEEcC------CHHHHHHHHHHHHhC
Confidence            9987665522111  12235789999 7999999999998642      345566777777764

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.47  E-value=5.3e-12  Score=112.53  Aligned_cols=113  Identities=21%  Similarity=0.277  Sum_probs=85.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++++|||+|||+|.++..++++.+..+|+++|+++.+++.|++++..++   ...+++++.+|+.+.+.  .++||+|++
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~---~~~~i~~~~~D~~~~~~--~~~fD~Iv~  195 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG---LEDRVTLIQSDLFAALP--GRKYDLIVS  195 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchhhccC--CCCccEEEE
Confidence            4579999999999999999987555699999999999999999987553   23589999999877652  357999999


Q ss_pred             cCCC-CCC----------CCcccCC--------chHHHHHHHHcCcCCCCcEEEEecC
Q 025141          182 DLAD-PIE----------GGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       182 D~~~-~~~----------~~p~~~L--------~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      |+|- +..          ..|...|        +.+.+++. +.+.|+|||.+++..+
T Consensus       196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~-a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAE-AADHLNENGVLVVEVG  252 (284)
T ss_pred             CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence            9862 110          0111111        12456777 6899999999999875

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.47  E-value=1.9e-12  Score=109.05  Aligned_cols=129  Identities=13%  Similarity=0.168  Sum_probs=99.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDvI  179 (257)
                      +..++|+||||+|.++..+++..+..++++||+++.+++.|++.....+    -++++++.+|+.++...  ..+.+|.|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~----l~ni~~i~~d~~~~~~~~~~~~~~d~v   91 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG----LKNLHVLCGDANELLDKFFPDGSLSKV   91 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC----CCCEEEEccCHHHHHHhhCCCCceeEE
Confidence            4568999999999999988886556799999999999999998876432    25899999999987643  23589999


Q ss_pred             EEcCCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       180 i~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      +++.++||....  ...+...++++. ++++|+|||.+.+...      ....+..+.+.+.+.
T Consensus        92 ~~~~pdpw~k~~h~~~r~~~~~~l~~-~~r~LkpgG~l~~~td------~~~~~~~~~~~~~~~  148 (194)
T TIGR00091        92 FLNFPDPWPKKRHNKRRITQPHFLKE-YANVLKKGGVIHFKTD------NEPLFEDMLKVLSEN  148 (194)
T ss_pred             EEECCCcCCCCCccccccCCHHHHHH-HHHHhCCCCEEEEEeC------CHHHHHHHHHHHHhC
Confidence            999988873211  123556789999 7999999999988653      234566666777664

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.45  E-value=1.8e-12  Score=110.68  Aligned_cols=105  Identities=26%  Similarity=0.357  Sum_probs=89.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-CCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~-~~~~fD  177 (257)
                      ..+++||+||.+.|..+.+++.. +...+++.+|+|++..+.|++++...+   -+++++++. +|+.+.+.. ..+.||
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag---~~~~i~~~~~gdal~~l~~~~~~~fD  134 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---VDDRIELLLGGDALDVLSRLLDGSFD  134 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC---CcceEEEEecCcHHHHHHhccCCCcc
Confidence            47899999999999999999885 336799999999999999999997554   467799999 699999986 568999


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +||+|+.-+         ..++||+. +.+.|+|||++++.
T Consensus       135 liFIDadK~---------~yp~~le~-~~~lLr~GGliv~D  165 (219)
T COG4122         135 LVFIDADKA---------DYPEYLER-ALPLLRPGGLIVAD  165 (219)
T ss_pred             EEEEeCChh---------hCHHHHHH-HHHHhCCCcEEEEe
Confidence            999997532         23688998 68899999999873

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.45  E-value=2.1e-12  Score=107.74  Aligned_cols=103  Identities=18%  Similarity=0.241  Sum_probs=82.1

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++++|||||||+|.++..++...+..+|++||+++.+++.++++....+    .++++++.+|+.++.  ..++||+|++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~----~~~i~~i~~d~~~~~--~~~~fD~I~s  115 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG----LNNVEIVNGRAEDFQ--HEEQFDVITS  115 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC----CCCeEEEecchhhcc--ccCCccEEEe
Confidence            4789999999999999888765555789999999999999998876442    246999999998852  3578999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      +...    .      -.++++. +++.|+|||++++..++
T Consensus       116 ~~~~----~------~~~~~~~-~~~~LkpgG~lvi~~~~  144 (181)
T TIGR00138       116 RALA----S------LNVLLEL-TLNLLKVGGYFLAYKGK  144 (181)
T ss_pred             hhhh----C------HHHHHHH-HHHhcCCCCEEEEEcCC
Confidence            7521    1      1357787 79999999999987643

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.43  E-value=1.2e-12  Score=113.65  Aligned_cols=104  Identities=20%  Similarity=0.234  Sum_probs=85.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-----~~  174 (257)
                      .++++||+||+|+|..+..+++. ++..+|+++|+|++.++.|++++...+   ...+++++.+|+.+.+...     .+
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g---l~~~i~~~~gda~~~L~~l~~~~~~~  143 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG---VDHKINFIQSDALSALDQLLNNDPKP  143 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEccHHHHHHHHHhCCCCC
Confidence            46889999999999988888764 445799999999999999999997653   2468999999999987642     46


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +||+|++|+..+.         -.++++. +.+.|+|||++++
T Consensus       144 ~fD~VfiDa~k~~---------y~~~~~~-~~~ll~~GG~ii~  176 (234)
T PLN02781        144 EFDFAFVDADKPN---------YVHFHEQ-LLKLVKVGGIIAF  176 (234)
T ss_pred             CCCEEEECCCHHH---------HHHHHHH-HHHhcCCCeEEEE
Confidence            8999999975321         1367888 6899999999986

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.42  E-value=1.5e-12  Score=100.45  Aligned_cols=105  Identities=21%  Similarity=0.208  Sum_probs=83.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.++||++|||.|..+..+++..+..+|+++|+++..++.+++++...+    .++++++.+|+...+....++||+|+
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~v~   93 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG----VSNIVIVEGDAPEALEDSLPEPDRVF   93 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC----CCceEEEeccccccChhhcCCCCEEE
Confidence            34579999999999999999986545799999999999999999876442    35789999998765544457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++....        . ..++++. +++.|+|||.++++.
T Consensus        94 ~~~~~~--------~-~~~~l~~-~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        94 IGGSGG--------L-LQEILEA-IWRRLRPGGRIVLNA  122 (124)
T ss_pred             ECCcch--------h-HHHHHHH-HHHHcCCCCEEEEEe
Confidence            975311        1 2478898 799999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.42  E-value=5.8e-13  Score=113.21  Aligned_cols=105  Identities=22%  Similarity=0.331  Sum_probs=85.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-----~~  174 (257)
                      .+|++||+||++.|..+..+++. ++..+|+.+|+||+..+.|++++...+   .+.+++++.+||.+++.+.     .+
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag---~~~~I~~~~gda~~~l~~l~~~~~~~  120 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG---LDDRIEVIEGDALEVLPELANDGEEG  120 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT---GGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC---CCCcEEEEEeccHhhHHHHHhccCCC
Confidence            47899999999999999999974 556799999999999999999997543   2469999999999988642     25


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +||+||+|+.-.         .-.++|+. +.+.|+|||++++.
T Consensus       121 ~fD~VFiDa~K~---------~y~~y~~~-~~~ll~~ggvii~D  154 (205)
T PF01596_consen  121 QFDFVFIDADKR---------NYLEYFEK-ALPLLRPGGVIIAD  154 (205)
T ss_dssp             SEEEEEEESTGG---------GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             ceeEEEEccccc---------chhhHHHH-HhhhccCCeEEEEc
Confidence            899999997421         12577888 68899999999984

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.41  E-value=8.9e-13  Score=106.47  Aligned_cols=106  Identities=22%  Similarity=0.295  Sum_probs=83.3

Q ss_pred             CCCeEEEEeccchHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025141          102 NPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvI  179 (257)
                      +..+|||+|||+|.++..++ +..+..++++||+++++++.|++.+...+    -++++++.+|..+ +... .++||+|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~-l~~~~~~~~D~I   77 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIED-LPQELEEKFDII   77 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTC-GCGCSSTTEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhc-cccccCCCeeEE
Confidence            56899999999999999999 45556799999999999999999876442    3489999999999 5432 2789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +++.+-..  .    -...++++. +.+.|+++|++++..
T Consensus        78 ~~~~~l~~--~----~~~~~~l~~-~~~~lk~~G~~i~~~  110 (152)
T PF13847_consen   78 ISNGVLHH--F----PDPEKVLKN-IIRLLKPGGILIISD  110 (152)
T ss_dssp             EEESTGGG--T----SHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEcCchhh--c----cCHHHHHHH-HHHHcCCCcEEEEEE
Confidence            99865321  1    112467888 799999999998764

...

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.40  E-value=1.4e-11  Score=103.05  Aligned_cols=118  Identities=16%  Similarity=0.158  Sum_probs=88.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ++..+|||||||+|.++..+++..+..+|+++|+++.+++.+++++...+    -++++++.+|+...+   .++||+|+
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~----~~~i~~~~~d~~~~~---~~~~D~v~  102 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG----CGNIDIIPGEAPIEL---PGKADAIF  102 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCeEEEecCchhhc---CcCCCEEE
Confidence            46689999999999999999886555799999999999999999886442    247999999975433   35799999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      ++....         ...++++. +.+.|+|||.++++...      .....++.+.+++.
T Consensus       103 ~~~~~~---------~~~~~l~~-~~~~Lk~gG~lv~~~~~------~~~~~~~~~~l~~~  147 (187)
T PRK08287        103 IGGSGG---------NLTAIIDW-SLAHLHPGGRLVLTFIL------LENLHSALAHLEKC  147 (187)
T ss_pred             ECCCcc---------CHHHHHHH-HHHhcCCCeEEEEEEec------HhhHHHHHHHHHHC
Confidence            874321         12567888 79999999999886421      22234555666653

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.40  E-value=1e-11  Score=115.34  Aligned_cols=140  Identities=22%  Similarity=0.247  Sum_probs=97.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fDv  178 (257)
                      ++++||++|||+|+++..++.. +..+|++||+++..++.|++++..++  +...+++++.+|++++++.   ..++||+
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fDl  296 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence            5689999999999998876663 45699999999999999999998764  2225899999999999864   2468999


Q ss_pred             EEEcCCCCCCCCcccCCc-----hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHH-HHHHhhhCCceEEEe
Q 025141          179 IIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI-YNTLRQVFKCGCCAL  249 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~-~~~l~~~F~~v~~~~  249 (257)
                      |++|||.-.. .. ..+.     -.++++. +.++|+|||++++-+.+.  ....+.+..+ .+...+.-..+....
T Consensus       297 VilDPP~f~~-~k-~~l~~~~~~y~~l~~~-a~~lLk~gG~lv~~scs~--~~~~~~f~~~v~~aa~~~~~~~~~l~  368 (396)
T PRK15128        297 IVMDPPKFVE-NK-SQLMGACRGYKDINML-AIQLLNPGGILLTFSCSG--LMTSDLFQKIIADAAIDAGRDVQFIE  368 (396)
T ss_pred             EEECCCCCCC-Ch-HHHHHHHHHHHHHHHH-HHHHcCCCeEEEEEeCCC--cCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            9999974110 11 1121     1244555 578999999998755443  2334434433 344444444555443

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.40  E-value=2.2e-11  Score=102.82  Aligned_cols=123  Identities=19%  Similarity=0.133  Sum_probs=94.2

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ..+..+|||+|||+|.++.++++. .+..+|+++|+++.+++.+++++..++   ..++++++.+|+.+++....++||.
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g---~~~~v~~~~~d~~~~l~~~~~~~D~  114 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG---VLNNIVLIKGEAPEILFTINEKFDR  114 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCCeEEEEechhhhHhhcCCCCCE
Confidence            345679999999999999988764 344699999999999999999876542   1368999999999887665578999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      |+++....   .      -.++++. +.+.|+|||.+++...      ....+..+.+.|++.
T Consensus       115 V~~~~~~~---~------~~~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~~  161 (198)
T PRK00377        115 IFIGGGSE---K------LKEIISA-SWEIIKKGGRIVIDAI------LLETVNNALSALENI  161 (198)
T ss_pred             EEECCCcc---c------HHHHHHH-HHHHcCCCcEEEEEee------cHHHHHHHHHHHHHc
Confidence            99864211   1      2467888 7899999999987532      344566777777654

>PLN02476 O-methyltransferase

Probab=99.39  E-value=2.7e-12  Score=113.54  Aligned_cols=105  Identities=17%  Similarity=0.257  Sum_probs=86.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-----~~  174 (257)
                      .++++||+||+++|..+.++++. ++..+|+.+|+|++..+.|++++...+   ..++++++.+|+.+.|...     .+
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG---l~~~I~li~GdA~e~L~~l~~~~~~~  193 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG---VSHKVNVKHGLAAESLKSMIQNGEGS  193 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcccCC
Confidence            46899999999999999998874 345689999999999999999998653   3469999999999998642     36


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +||+||+|+..+.         ..++|+. +.+.|+|||++++.
T Consensus       194 ~FD~VFIDa~K~~---------Y~~y~e~-~l~lL~~GGvIV~D  227 (278)
T PLN02476        194 SYDFAFVDADKRM---------YQDYFEL-LLQLVRVGGVIVMD  227 (278)
T ss_pred             CCCEEEECCCHHH---------HHHHHHH-HHHhcCCCcEEEEe
Confidence            8999999975321         3577888 68999999999874

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.39  E-value=5.3e-12  Score=116.40  Aligned_cols=138  Identities=17%  Similarity=0.202  Sum_probs=100.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~fDv  178 (257)
                      +.++||++-|-||+.+..++. .+..+||.||++...++.|++++.+|+  +...++.++.+|+++|++..   +++||+
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~LNg--~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl  293 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAELNG--LDGDRHRFIVGDVFKWLRKAERRGEKFDL  293 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHhcC--CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence            489999999999999999888 466799999999999999999999885  45678999999999999864   359999


Q ss_pred             EEEcCCCCCCCCcccCCch-----HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceE
Q 025141          179 IIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGC  246 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t-----~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~  246 (257)
                      ||+|||.-.. .+ ..++.     .+.... +.++|+|||++++-.++.. .........+.+.+...-..+.
T Consensus       294 IilDPPsF~r-~k-~~~~~~~rdy~~l~~~-~~~iL~pgG~l~~~s~~~~-~~~~~f~~~i~~a~~~~~~~~~  362 (393)
T COG1092         294 IILDPPSFAR-SK-KQEFSAQRDYKDLNDL-ALRLLAPGGTLVTSSCSRH-FSSDLFLEIIARAAAAAGRRAQ  362 (393)
T ss_pred             EEECCccccc-Cc-ccchhHHHHHHHHHHH-HHHHcCCCCEEEEEecCCc-cCHHHHHHHHHHHHHhcCCcEE
Confidence            9999985221 22 12222     244455 4799999999998665442 2223334444444444433333

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=8.2e-12  Score=110.50  Aligned_cols=128  Identities=16%  Similarity=0.181  Sum_probs=95.9

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      ..+|||+|||.|.++..+++..+..++|.||+|...++.||++...|+    -++..++..|..+-+.   ++||+|+++
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~----~~~~~v~~s~~~~~v~---~kfd~IisN  231 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG----VENTEVWASNLYEPVE---GKFDLIISN  231 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC----CCccEEEEeccccccc---ccccEEEeC
Confidence            449999999999999999998778899999999999999999998763    2233788888655543   499999999


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEE
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCA  248 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~  248 (257)
                      ||-+..... .+-...++++. ++++|++||-|.+-...         ...+...|++.|.++...
T Consensus       232 PPfh~G~~v-~~~~~~~~i~~-A~~~L~~gGeL~iVan~---------~l~y~~~L~~~Fg~v~~l  286 (300)
T COG2813         232 PPFHAGKAV-VHSLAQEIIAA-AARHLKPGGELWIVANR---------HLPYEKKLKELFGNVEVL  286 (300)
T ss_pred             CCccCCcch-hHHHHHHHHHH-HHHhhccCCEEEEEEcC---------CCChHHHHHHhcCCEEEE
Confidence            985431111 12234589999 89999999976654321         113445688889877753

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.38  E-value=6.5e-12  Score=115.74  Aligned_cols=131  Identities=18%  Similarity=0.216  Sum_probs=94.6

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      ..+|||||||+|.++..+++..+..+|++||+++.+++.|++++..+... ...+++++.+|+...+.  .++||+|+++
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~~--~~~fDlIlsN  305 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGVE--PFRFNAVLCN  305 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccCC--CCCEEEEEEC
Confidence            46999999999999999988655679999999999999999998755310 12478999999876542  3589999999


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC  247 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  247 (257)
                      ++-+.......+ ...++++. ++++|+|||.+++-...     .    ......|++.|..+..
T Consensus       306 PPfh~~~~~~~~-ia~~l~~~-a~~~LkpGG~L~iV~nr-----~----l~y~~~L~~~fg~~~~  359 (378)
T PRK15001        306 PPFHQQHALTDN-VAWEMFHH-ARRCLKINGELYIVANR-----H----LDYFHKLKKIFGNCTT  359 (378)
T ss_pred             cCcccCccCCHH-HHHHHHHH-HHHhcccCCEEEEEEec-----C----cCHHHHHHHHcCCceE
Confidence            874321111111 23578888 79999999988875421     1    1234556777877765

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.37  E-value=4.5e-11  Score=110.85  Aligned_cols=177  Identities=15%  Similarity=0.166  Sum_probs=107.7

Q ss_pred             CCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECC
Q 025141           56 RYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDID  135 (257)
Q Consensus        56 ~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid  135 (257)
                      |.|.|.=.... +|..+.++-......++    ++.++...+...++..+|||||||+|.++..+++..+..+|+++|+|
T Consensus       210 PlqYIlG~~~F-~G~~f~V~p~vLIPRpe----TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS  284 (423)
T PRK14966        210 PVAYILGVREF-YGRRFAVNPNVLIPRPE----TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDIS  284 (423)
T ss_pred             CceeEeeeeee-cCcEEEeCCCccCCCcc----HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECC
Confidence            44444333322 35555555443333332    23333222222234569999999999999998875455799999999


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCC----------CCcccCCc--------
Q 025141          136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKLY--------  196 (257)
Q Consensus       136 ~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~-~~~----------~~p~~~L~--------  196 (257)
                      +++++.|+++....+     .+++++.+|..+......++||+|++|+|- +..          ..|...|+        
T Consensus       285 ~~ALe~AreNa~~~g-----~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~  359 (423)
T PRK14966        285 PPALETARKNAADLG-----ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSC  359 (423)
T ss_pred             HHHHHHHHHHHHHcC-----CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHH
Confidence            999999999986542     389999999866422223579999999972 110          01111222        


Q ss_pred             hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEee
Q 025141          197 TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALF  250 (257)
Q Consensus       197 t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~  250 (257)
                      -+.+++. +.+.|+|||.+++..+.    .+.+   .+.+.+++. |..+....+
T Consensus       360 yr~Ii~~-a~~~LkpgG~lilEiG~----~Q~e---~V~~ll~~~Gf~~v~v~kD  406 (423)
T PRK14966        360 IRTLAQG-APDRLAEGGFLLLEHGF----DQGA---AVRGVLAENGFSGVETLPD  406 (423)
T ss_pred             HHHHHHH-HHHhcCCCcEEEEEECc----cHHH---HHHHHHHHCCCcEEEEEEc
Confidence            1244444 46899999999887643    2333   344444443 665555443

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.36  E-value=2.1e-11  Score=109.86  Aligned_cols=112  Identities=20%  Similarity=0.248  Sum_probs=85.5

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      +++|||+|||+|.++..+++..+..+|+++|+++.+++.|++++..++   ...+++++.+|+.+.+.  .++||+|++|
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~---l~~~i~~~~~D~~~~l~--~~~fDlIvsN  208 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG---LEDRVTLIESDLFAALP--GRRYDLIVSN  208 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCcEEEEECchhhhCC--CCCccEEEEC
Confidence            378999999999999999886556799999999999999999987543   23579999999887653  3579999999


Q ss_pred             CCC-CCC----------CCcccCCc--------hHHHHHHHHcCcCCCCcEEEEecC
Q 025141          183 LAD-PIE----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       183 ~~~-~~~----------~~p~~~L~--------t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +|- +..          ..|...|+        .+.+++. +.+.|+|||.+++..+
T Consensus       209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~-a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAE-APDYLTEDGVLVVEVG  264 (307)
T ss_pred             CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence            862 110          01211121        2466777 6899999999999865

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.36  E-value=2.8e-11  Score=100.24  Aligned_cols=129  Identities=24%  Similarity=0.238  Sum_probs=101.2

Q ss_pred             HHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 025141           90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL  169 (257)
Q Consensus        90 e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l  169 (257)
                      ++++. ..+...+...++|||||+|+++.+++...+..+|+++|-|++.++..+++....    .-++++++.+||-+.+
T Consensus        23 Ral~l-s~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f----g~~n~~vv~g~Ap~~L   97 (187)
T COG2242          23 RALTL-SKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF----GVDNLEVVEGDAPEAL   97 (187)
T ss_pred             HHHHH-HhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh----CCCcEEEEeccchHhh
Confidence            44442 333334557899999999999999997666789999999999999999998754    2589999999999999


Q ss_pred             hcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      .... ++|.||+.-.. .         -.+.++. +..+|+|||.+++|..      ..+.....++.+++.
T Consensus        98 ~~~~-~~daiFIGGg~-~---------i~~ile~-~~~~l~~ggrlV~nai------tlE~~~~a~~~~~~~  151 (187)
T COG2242          98 PDLP-SPDAIFIGGGG-N---------IEEILEA-AWERLKPGGRLVANAI------TLETLAKALEALEQL  151 (187)
T ss_pred             cCCC-CCCEEEECCCC-C---------HHHHHHH-HHHHcCcCCeEEEEee------cHHHHHHHHHHHHHc
Confidence            8654 89999997541 1         2467788 6899999999999963      345566777777765

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.36  E-value=2e-11  Score=112.42  Aligned_cols=130  Identities=16%  Similarity=0.187  Sum_probs=102.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvI  179 (257)
                      .....+|+||||+|..+..+++..+...++++|+++.+++.+.+.....    .-+++.++.+|++.++.. .++.+|.|
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~----gL~NV~~i~~DA~~ll~~~~~~s~D~I  196 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL----NLKNLLIINYDARLLLELLPSNSVEKI  196 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCCcEEEEECCHHHhhhhCCCCceeEE
Confidence            3456899999999999999998655679999999999999999887644    236799999999887643 35789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      ++..++||...+...+.+.+|++. ++++|+|||.+.+.+..      ...+..+.+.+.+.
T Consensus       197 ~lnFPdPW~KkrHRRlv~~~fL~e-~~RvLkpGG~l~l~TD~------~~y~~~~~e~~~~~  251 (390)
T PRK14121        197 FVHFPVPWDKKPHRRVISEDFLNE-ALRVLKPGGTLELRTDS------ELYFEFSLELFLKL  251 (390)
T ss_pred             EEeCCCCccccchhhccHHHHHHH-HHHHcCCCcEEEEEEEC------HHHHHHHHHHHHhC
Confidence            999888885333345677899999 89999999999987532      34555555555443

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.35  E-value=5.9e-11  Score=100.46  Aligned_cols=145  Identities=14%  Similarity=0.094  Sum_probs=96.6

Q ss_pred             cEEEEEecCCeeEEEE-cCcccccCCC-chhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCH
Q 025141           59 DIALLDTKPFGKALVI-DGKLQSAEVD-EFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus        59 ~i~v~~~~~~g~~L~l-dG~~~~~~~~-~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~  136 (257)
                      .++|+-.+..|+.|.. ++...  .+. +..+...+..+  ....+..+|||+|||+|.++.+++... ..+|++||+++
T Consensus        12 ~mrIi~g~~~g~~l~~~~~~~~--Rp~~d~v~e~l~~~l--~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~   86 (199)
T PRK10909         12 QIRIIGGQWRGRKLPVPDSPGL--RPTTDRVRETLFNWL--APVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDR   86 (199)
T ss_pred             CEEEEeeccCCCEeCCCCCCCc--CcCCHHHHHHHHHHH--hhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCH
Confidence            4788877766776643 11111  111 11122222211  111345799999999999999866543 47999999999


Q ss_pred             HHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHc--CcCCCCcE
Q 025141          137 EVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGI  214 (257)
Q Consensus       137 ~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGi  214 (257)
                      +.++.+++++..++    -.+++++.+|+.+++....++||+|++|||-..  +     +..+.++. +.  ..|+|+++
T Consensus        87 ~a~~~a~~Nl~~~~----~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g-----~~~~~l~~-l~~~~~l~~~~i  154 (199)
T PRK10909         87 AVAQQLIKNLATLK----AGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK--G-----LLEETINL-LEDNGWLADEAL  154 (199)
T ss_pred             HHHHHHHHHHHHhC----CCcEEEEEchHHHHHhhcCCCceEEEECCCCCC--C-----hHHHHHHH-HHHCCCcCCCcE
Confidence            99999999987653    247999999999988544457999999987311  1     12333443 33  45899999


Q ss_pred             EEEecC
Q 025141          215 FVTQAG  220 (257)
Q Consensus       215 l~~~~~  220 (257)
                      +++...
T Consensus       155 v~ve~~  160 (199)
T PRK10909        155 IYVESE  160 (199)
T ss_pred             EEEEec
Confidence            998753

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.35  E-value=8.1e-11  Score=102.12  Aligned_cols=136  Identities=16%  Similarity=0.233  Sum_probs=95.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ..+++|||+|||+|..+..+++..+..+++++|+++.+++.+++++...+    .++++++.+|+.+.+  ..++||+|+
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~Vi  159 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG----LDNVTFLQSDWFEPL--PGGKFDLIV  159 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhccC--cCCceeEEE
Confidence            45679999999999999999986555699999999999999999886542    247999999987754  247899999


Q ss_pred             EcCCCCCCC------------CcccCC--------chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025141          181 GDLADPIEG------------GPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (257)
Q Consensus       181 ~D~~~~~~~------------~p~~~L--------~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~  240 (257)
                      +|++-....            .|...+        .-..+++. +.+.|+|||.+++..+    +.+..   .+.+.|++
T Consensus       160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~-~~~~L~~gG~~~~~~~----~~~~~---~~~~~l~~  231 (251)
T TIGR03534       160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ-APRLLKPGGWLLLEIG----YDQGE---AVRALFEA  231 (251)
T ss_pred             ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH-HHHhcccCCEEEEEEC----ccHHH---HHHHHHHh
Confidence            998621100            000000        01367787 6899999999998753    22333   34444444


Q ss_pred             -hCCceEEEee
Q 025141          241 -VFKCGCCALF  250 (257)
Q Consensus       241 -~F~~v~~~~~  250 (257)
                       -|..+..+..
T Consensus       232 ~gf~~v~~~~d  242 (251)
T TIGR03534       232 AGFADVETRKD  242 (251)
T ss_pred             CCCCceEEEeC
Confidence             3766666544

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.34  E-value=1.2e-11  Score=108.27  Aligned_cols=106  Identities=22%  Similarity=0.351  Sum_probs=83.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||+|||+|..+..+++. + .+|+++|+++++++.|+++....+   ..++++++.+|+.+......++||+|+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~-g-~~v~~vD~s~~~l~~a~~~~~~~g---~~~~v~~~~~d~~~l~~~~~~~fD~V~  117 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL-G-HQVILCDLSAEMIQRAKQAAEAKG---VSDNMQFIHCAAQDIAQHLETPVDLIL  117 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHhcC---CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence            45689999999999999999986 3 589999999999999999875432   246899999999886444557899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-.+...|      ..+++. +.+.|+|||++++.
T Consensus       118 ~~~vl~~~~~~------~~~l~~-~~~~LkpgG~l~i~  148 (255)
T PRK11036        118 FHAVLEWVADP------KSVLQT-LWSVLRPGGALSLM  148 (255)
T ss_pred             ehhHHHhhCCH------HHHHHH-HHHHcCCCeEEEEE
Confidence            87542221122      467888 79999999999764

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=4.1e-11  Score=106.57  Aligned_cols=141  Identities=22%  Similarity=0.317  Sum_probs=94.7

Q ss_pred             eeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh
Q 025141           69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV  148 (257)
Q Consensus        69 g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~  148 (257)
                      |..+.++-.+....++...-.+.+.  .... ..+++|||||||+|.++..+++..+..+|+++||+|..++.|+++...
T Consensus        80 gl~~~v~~~vliPr~dTe~Lve~~l--~~~~-~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~  156 (280)
T COG2890          80 GLRFKVDEGVLIPRPDTELLVEAAL--ALLL-QLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER  156 (280)
T ss_pred             ceeeeeCCCceecCCchHHHHHHHH--Hhhh-hcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence            4556566555444454332222221  1111 122279999999999999999987767999999999999999999886


Q ss_pred             ccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCC----------CCcccCCc--------hHHHHHHHHcCcC
Q 025141          149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKLY--------TKSFYEFVVKPRL  209 (257)
Q Consensus       149 ~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~-~~~----------~~p~~~L~--------t~ef~~~~~~~~L  209 (257)
                      ++    -.++.++.+|.++-+   .++||+|+++||- |..          ..|...|+        .+.|+.. +.+.|
T Consensus       157 ~~----l~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~-a~~~l  228 (280)
T COG2890         157 NG----LVRVLVVQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGE-APDIL  228 (280)
T ss_pred             cC----CccEEEEeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHh-hHHHc
Confidence            63    156667776755544   3599999999972 221          11211122        2456666 68999


Q ss_pred             CCCcEEEEecC
Q 025141          210 NPEGIFVTQAG  220 (257)
Q Consensus       210 ~pgGil~~~~~  220 (257)
                      +|+|++++..+
T Consensus       229 ~~~g~l~le~g  239 (280)
T COG2890         229 KPGGVLILEIG  239 (280)
T ss_pred             CCCcEEEEEEC
Confidence            99999999875

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.34  E-value=2.8e-11  Score=104.73  Aligned_cols=106  Identities=19%  Similarity=0.211  Sum_probs=85.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|-++..+++..+..+|+++|+++.|++.+++.....+    -..++++.+||.+ |.-.++.||+|.
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~----~~~i~fv~~dAe~-LPf~D~sFD~vt  124 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG----VQNVEFVVGDAEN-LPFPDNSFDAVT  124 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC----ccceEEEEechhh-CCCCCCccCEEE
Confidence            46899999999999999999998667899999999999999999876331    1229999999866 456789999999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +.-.-.+...      -...+++ +.|+|||||++++.
T Consensus       125 ~~fglrnv~d------~~~aL~E-~~RVlKpgG~~~vl  155 (238)
T COG2226         125 ISFGLRNVTD------IDKALKE-MYRVLKPGGRLLVL  155 (238)
T ss_pred             eeehhhcCCC------HHHHHHH-HHHhhcCCeEEEEE
Confidence            8754322111      2467888 79999999988765

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.34  E-value=5.6e-11  Score=105.91  Aligned_cols=112  Identities=21%  Similarity=0.315  Sum_probs=84.2

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~  183 (257)
                      .+|||+|||+|.++..+++..+..+|+++|+++++++.|+++...++   ...+++++.+|..+.+.  .++||+|++|+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~---~~~~v~~~~~d~~~~~~--~~~fDlIvsNP  190 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ---LEHRVEFIQSNLFEPLA--GQKIDIIVSNP  190 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchhccCc--CCCccEEEECC
Confidence            68999999999999999987555799999999999999999986543   23579999999876542  24799999998


Q ss_pred             CC-CCC----------CCcccCC--------chHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          184 AD-PIE----------GGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       184 ~~-~~~----------~~p~~~L--------~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      |- +..          ..|...|        ..+.+++. +.+.|+|||++++..+.
T Consensus       191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~-a~~~L~~gG~l~~e~g~  246 (284)
T TIGR00536       191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIEL-APDYLKPNGFLVCEIGN  246 (284)
T ss_pred             CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHH-HHHhccCCCEEEEEECc
Confidence            62 110          0111111        23456676 68899999999998753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.33  E-value=9.7e-11  Score=103.23  Aligned_cols=135  Identities=19%  Similarity=0.283  Sum_probs=93.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||++|||+|..+..+++..+..+++++|+++.+++.+++++...    ...+++++.+|..+.+.  .++||+|+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~~--~~~fD~Iv  180 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG----LGARVEFLQGDWFEPLP--GGRFDLIV  180 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC----CCCcEEEEEccccCcCC--CCceeEEE
Confidence            3567999999999999999998765679999999999999999988621    24689999999855432  46899999


Q ss_pred             EcCCC-CCC-----------CCcccCCch--------HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025141          181 GDLAD-PIE-----------GGPCYKLYT--------KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (257)
Q Consensus       181 ~D~~~-~~~-----------~~p~~~L~t--------~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~  240 (257)
                      ++++- +..           ..|...++.        ..+++. +.+.|+|||.+++..+.    .+..   .+.+.+++
T Consensus       181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~-~~~~Lk~gG~l~~e~g~----~~~~---~~~~~l~~  252 (275)
T PRK09328        181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ-APRYLKPGGWLLLEIGY----DQGE---AVRALLAA  252 (275)
T ss_pred             ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH-HHHhcccCCEEEEEECc----hHHH---HHHHHHHh
Confidence            99862 110           011112221        456666 57999999999997642    2233   34444443


Q ss_pred             -hCCceEEEe
Q 025141          241 -VFKCGCCAL  249 (257)
Q Consensus       241 -~F~~v~~~~  249 (257)
                       -|..+..+.
T Consensus       253 ~gf~~v~~~~  262 (275)
T PRK09328        253 AGFADVETRK  262 (275)
T ss_pred             CCCceeEEec
Confidence             366665543

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.32  E-value=1.2e-11  Score=108.34  Aligned_cols=99  Identities=18%  Similarity=0.191  Sum_probs=79.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|.+++.+++..+..+|+++|+++.+++.|++.           +++++.+|+.++.  ..++||+|+
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~--~~~~fD~v~   94 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK--PKPDTDVVV   94 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC--CCCCceEEE
Confidence            466899999999999999998864456999999999999999752           4788999987763  346899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-++.  +    -...+++. ++++|||||.+++..
T Consensus        95 ~~~~l~~~--~----d~~~~l~~-~~~~LkpgG~l~~~~  126 (255)
T PRK14103         95 SNAALQWV--P----EHADLLVR-WVDELAPGSWIAVQV  126 (255)
T ss_pred             EehhhhhC--C----CHHHHHHH-HHHhCCCCcEEEEEc
Confidence            98764431  1    12567888 799999999998864

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=99.32  E-value=1.7e-12  Score=120.65  Aligned_cols=155  Identities=19%  Similarity=0.217  Sum_probs=122.4

Q ss_pred             hHHHHHH-HHHhhc------CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeE
Q 025141           87 IYHESLV-HPALLH------HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE  159 (257)
Q Consensus        87 ~y~e~l~-~~~l~~------~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~  159 (257)
                      .||.+|. ..++..      +....++|++|.|+|.+...+..+.+..++|+||+||++++.|++||.+..    +.|.+
T Consensus       273 ~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q----~~r~~  348 (482)
T KOG2352|consen  273 QYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ----SDRNK  348 (482)
T ss_pred             chhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh----hhhhh
Confidence            5777764 233332      234578999999999999998887666799999999999999999999873    34899


Q ss_pred             EEEcchHHHHhcC------CCceeEEEEcCCCCCC---CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHH
Q 025141          160 LVINDARAELESR------KESYDVIIGDLADPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEV  230 (257)
Q Consensus       160 i~~~Da~~~l~~~------~~~fDvIi~D~~~~~~---~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~  230 (257)
                      +++.||.+|++++      +.+||+++.|.-++..   ..|+..+...+++.. ++..|.|.|++++|..+++    ...
T Consensus       349 V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~-~k~~l~p~g~f~inlv~r~----~~~  423 (482)
T KOG2352|consen  349 VHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQP-VKMILPPRGMFIINLVTRN----SSF  423 (482)
T ss_pred             hhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHH-HhhccCccceEEEEEecCC----cch
Confidence            9999999999763      3579999999853221   134456778899999 8999999999999987663    456


Q ss_pred             HHHHHHHHhhhCCceEEEee
Q 025141          231 FSCIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       231 ~~~~~~~l~~~F~~v~~~~~  250 (257)
                      ..++...|+++||+++-+..
T Consensus       424 ~~~~~~~l~~vf~~l~~~~~  443 (482)
T KOG2352|consen  424 KDEVLMNLAKVFPQLYHHQL  443 (482)
T ss_pred             hHHHHHhhhhhhHHHhhhhc
Confidence            67888999999998876544

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.32  E-value=2.3e-11  Score=111.03  Aligned_cols=128  Identities=16%  Similarity=0.179  Sum_probs=91.7

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ...+|||+|||+|.++..+++..+..+|+++|+++.+++.+++++..++     -..+++..|+...+   .++||+|++
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-----l~~~~~~~D~~~~~---~~~fDlIvs  267 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-----LEGEVFASNVFSDI---KGRFDMIIS  267 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEccccccc---CCCccEEEE
Confidence            3468999999999999999987555689999999999999999887653     23577888876543   478999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEE
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCA  248 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~  248 (257)
                      +++-+..... ..-...++++. +++.|+|||.+++-...   +.      ..-..+.+.|+.+...
T Consensus       268 NPPFH~g~~~-~~~~~~~~i~~-a~~~LkpgG~L~iVan~---~l------~y~~~l~~~Fg~~~~l  323 (342)
T PRK09489        268 NPPFHDGIQT-SLDAAQTLIRG-AVRHLNSGGELRIVANA---FL------PYPDLLDETFGSHEVL  323 (342)
T ss_pred             CCCccCCccc-cHHHHHHHHHH-HHHhcCcCCEEEEEEeC---CC------ChHHHHHHHcCCeEEE
Confidence            9864321111 01124688999 79999999988664422   11      1113455678777654

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=2.1e-11  Score=105.22  Aligned_cols=125  Identities=22%  Similarity=0.318  Sum_probs=99.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+..+||+.|.|+|.++..+++. .+..+|+.+|+.++..+.|++++...+  + ..++++..+|..+....  +.||+|
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l-~d~v~~~~~Dv~~~~~~--~~vDav  167 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--L-GDRVTLKLGDVREGIDE--EDVDAV  167 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--c-ccceEEEeccccccccc--cccCEE
Confidence            45689999999999999999973 455799999999999999999997542  2 34599999999988654  499999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEE
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCA  248 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~  248 (257)
                      ++|.++||           ++++. +++.|+|||.+++..  |+    -+..+..+..|++. |-+...+
T Consensus       168 ~LDmp~PW-----------~~le~-~~~~Lkpgg~~~~y~--P~----veQv~kt~~~l~~~g~~~ie~~  219 (256)
T COG2519         168 FLDLPDPW-----------NVLEH-VSDALKPGGVVVVYS--PT----VEQVEKTVEALRERGFVDIEAV  219 (256)
T ss_pred             EEcCCChH-----------HHHHH-HHHHhCCCcEEEEEc--CC----HHHHHHHHHHHHhcCccchhhh
Confidence            99999887           45677 799999999999874  32    34456777777777 6555443

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.31  E-value=6.2e-11  Score=99.81  Aligned_cols=104  Identities=21%  Similarity=0.210  Sum_probs=81.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|||+|||+|.++.++++..+..+|+++|+|+++++.+++++...+    .++++++.+|+.+.+......+|.|+
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~d~v~  114 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG----VKNVEVIEGSAPECLAQLAPAPDRVC  114 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCeEEEECchHHHHhhCCCCCCEEE
Confidence            35579999999999999998875445799999999999999999886442    25799999999875544344578888


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++...     +     -.++++. +.+.|+|||.+++..
T Consensus       115 ~~~~~-----~-----~~~~l~~-~~~~LkpgG~li~~~  142 (196)
T PRK07402        115 IEGGR-----P-----IKEILQA-VWQYLKPGGRLVATA  142 (196)
T ss_pred             EECCc-----C-----HHHHHHH-HHHhcCCCeEEEEEe
Confidence            86421     1     2577888 789999999999875

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.31  E-value=1.7e-11  Score=106.96  Aligned_cols=105  Identities=14%  Similarity=0.118  Sum_probs=86.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC------C
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K  173 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~------~  173 (257)
                      .++++||+||++.|..+..++.. ++..+|+.+|+|++..+.|+++|...+   ..++++++.+|+.+.+...      .
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag---~~~~I~~~~G~a~e~L~~l~~~~~~~  154 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG---VAHKIDFREGPALPVLDQMIEDGKYH  154 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCceEEEeccHHHHHHHHHhccccC
Confidence            47889999999999999988864 445799999999999999999997553   2479999999999998762      2


Q ss_pred             CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++||+||+|+...        . ..++|+. +.+.|+|||++++.
T Consensus       155 ~~fD~iFiDadK~--------~-Y~~y~~~-~l~ll~~GGviv~D  189 (247)
T PLN02589        155 GTFDFIFVDADKD--------N-YINYHKR-LIDLVKVGGVIGYD  189 (247)
T ss_pred             CcccEEEecCCHH--------H-hHHHHHH-HHHhcCCCeEEEEc
Confidence            6899999997521        1 2578888 58899999999863

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.31  E-value=8.1e-11  Score=112.71  Aligned_cols=113  Identities=22%  Similarity=0.333  Sum_probs=83.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++   ...+++++.+|..+.+.  .++||+|++
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~---l~~~v~~~~~D~~~~~~--~~~fDlIvs  212 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE---VTDRIQIIHSNWFENIE--KQKFDFIVS  212 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC---CccceeeeecchhhhCc--CCCccEEEE
Confidence            3468999999999999988875445799999999999999999976442   23589999999876553  358999999


Q ss_pred             cCCC-CCC-----------CCcccCCc----h----HHHHHHHHcCcCCCCcEEEEecC
Q 025141          182 DLAD-PIE-----------GGPCYKLY----T----KSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       182 D~~~-~~~-----------~~p~~~L~----t----~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ++|- +..           ..|...|+    .    +.+++. +.+.|+|||.+++..+
T Consensus       213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~-a~~~L~~gG~l~lEig  270 (506)
T PRK01544        213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAEN-AKQFLKPNGKIILEIG  270 (506)
T ss_pred             CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHH-HHHhccCCCEEEEEEC
Confidence            9862 110           01211233    2    234455 5789999999998764

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.31  E-value=8.9e-11  Score=102.88  Aligned_cols=123  Identities=13%  Similarity=0.142  Sum_probs=87.6

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEE
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG  181 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi~  181 (257)
                      +.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++       ++++.+|..+++.. ..++||+|++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-------~~~~~~D~~~~l~~~~~~~fDlVv~  159 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-------GTVHEGDLYDALPTALRGRVDILAA  159 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CEEEEeechhhcchhcCCCEeEEEE
Confidence            468999999999999998876444689999999999999999986541       47899999887643 2357999999


Q ss_pred             cCCC-CCC-----------CCcccCCc--------hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025141          182 DLAD-PIE-----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (257)
Q Consensus       182 D~~~-~~~-----------~~p~~~L~--------t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~  240 (257)
                      |+|- +..           ..|...|.        .+.+++. +.+.|+|||.+++..+..    +   ..++...|++
T Consensus       160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~-a~~~L~~gG~l~l~~~~~----~---~~~v~~~l~~  230 (251)
T TIGR03704       160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG-APDWLAPGGHLLVETSER----Q---APLAVEAFAR  230 (251)
T ss_pred             CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEECcc----h---HHHHHHHHHH
Confidence            9862 211           01111121        2466666 689999999999875421    2   3355555654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.31  E-value=6.2e-11  Score=101.93  Aligned_cols=107  Identities=13%  Similarity=0.066  Sum_probs=82.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.++|||+|||+|..+..+++. ++..+|+++|+++.+++.+++.+...    ..++++++.+|+.+.. ...++||+|
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~-~~~~~fD~V  118 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----GLHNVELVHGNAMELP-FDDNSFDYV  118 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEechhcCC-CCCCCccEE
Confidence            45689999999999999998875 34469999999999999999987533    2358999999987742 235789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +++..-.+  .+    ...++++. +.++|+|||.+++..
T Consensus       119 ~~~~~l~~--~~----~~~~~l~~-~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       119 TIGFGLRN--VP----DYMQVLRE-MYRVVKPGGKVVCLE  151 (231)
T ss_pred             EEeccccc--CC----CHHHHHHH-HHHHcCcCeEEEEEE
Confidence            98754322  11    12467888 799999999988643

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.31  E-value=3.1e-11  Score=119.81  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=89.3

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++++||++|||+|+++..+++. +..+|++||+++.+++.|++++..++  +...+++++.+|++++++...++||+|++
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng--~~~~~v~~i~~D~~~~l~~~~~~fDlIil  614 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG--LSGRQHRLIQADCLAWLKEAREQFDLIFI  614 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC--CCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence            5689999999999999999985 55689999999999999999998764  23358999999999999766678999999


Q ss_pred             cCCCCCCCCcccCCc-----hHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          182 DLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       182 D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      |+|.-.........+     -.+.+.. +.++|+|||++++.+.+
T Consensus       615 DPP~f~~~~~~~~~~~~~~~y~~l~~~-a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        615 DPPTFSNSKRMEDSFDVQRDHVALIKD-AKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             CCCCCCCCCccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEeCC
Confidence            987421000000111     1356666 57899999999886543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.30  E-value=1.5e-10  Score=103.31  Aligned_cols=130  Identities=19%  Similarity=0.216  Sum_probs=94.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..++   ...++++..+|...   ...++||+|+
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~---~~~~~~~~~~~~~~---~~~~~fDlVv  230 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQ---VSDRLQVKLIYLEQ---PIEGKADVIV  230 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC---CCcceEEEeccccc---ccCCCceEEE
Confidence            45689999999999999888876 45799999999999999999987653   23467777776322   2346899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCc
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSY  253 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~  253 (257)
                      .+....    .     ..+++.. +.+.|+|||.+++..-     . ......+.+.+++.|..+.......|
T Consensus       231 an~~~~----~-----l~~ll~~-~~~~LkpgG~li~sgi-----~-~~~~~~v~~~~~~~f~~~~~~~~~~W  287 (288)
T TIGR00406       231 ANILAE----V-----IKELYPQ-FSRLVKPGGWLILSGI-----L-ETQAQSVCDAYEQGFTVVEIRQREEW  287 (288)
T ss_pred             EecCHH----H-----HHHHHHH-HHHHcCCCcEEEEEeC-----c-HhHHHHHHHHHHccCceeeEeccCCC
Confidence            985421    1     2467788 7999999999987531     1 23345666777766777666555555

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.30  E-value=2.2e-11  Score=106.57  Aligned_cols=101  Identities=18%  Similarity=0.295  Sum_probs=81.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|.++..+++..+..+|++||+++.+++.|++++         ++++++.+|+..+.  ..++||+|+
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~--~~~~fD~v~   98 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ--PPQALDLIF   98 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC--CCCCccEEE
Confidence            4568999999999999999887655579999999999999999863         36789999987764  346899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++..-++.  +    -...+++. +.++|+|||.+++..
T Consensus        99 ~~~~l~~~--~----d~~~~l~~-~~~~LkpgG~~~~~~  130 (258)
T PRK01683         99 ANASLQWL--P----DHLELFPR-LVSLLAPGGVLAVQM  130 (258)
T ss_pred             EccChhhC--C----CHHHHHHH-HHHhcCCCcEEEEEC
Confidence            98764331  1    13578898 799999999999875

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.29  E-value=1.6e-11  Score=103.36  Aligned_cols=110  Identities=16%  Similarity=0.248  Sum_probs=89.7

Q ss_pred             HHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 025141           89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (257)
Q Consensus        89 ~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~  168 (257)
                      .+.+.++|+   ..+.+|.|||||.|..+..+++..+...|+++|-|++|++.|++.+         |++++..+|.++|
T Consensus        20 ~dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w   87 (257)
T COG4106          20 RDLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW   87 (257)
T ss_pred             HHHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc
Confidence            455666665   4678999999999999999999877889999999999999998754         6789999999998


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                        +.....|+|+.++.-.|.  | .   -.+.+.. +-..|+|||++++|.
T Consensus        88 --~p~~~~dllfaNAvlqWl--p-d---H~~ll~r-L~~~L~Pgg~LAVQm  129 (257)
T COG4106          88 --KPEQPTDLLFANAVLQWL--P-D---HPELLPR-LVSQLAPGGVLAVQM  129 (257)
T ss_pred             --CCCCccchhhhhhhhhhc--c-c---cHHHHHH-HHHhhCCCceEEEEC
Confidence              345789999999876662  2 1   1345666 678999999999996

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.29  E-value=5.7e-11  Score=103.75  Aligned_cols=107  Identities=17%  Similarity=0.292  Sum_probs=80.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHh--cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILR--HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~--~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ++..+|||||||+|..+..+++  ..+..++++||+++.+++.|++++...+   ...+++++.+|+.+..   .+.+|+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~  128 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDIA---IENASM  128 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChhhCC---CCCCCE
Confidence            4668999999999999988876  2345799999999999999999886432   2358999999986642   245999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |++...-+.. .+   -....+++. +++.|+|||.+++.
T Consensus       129 vv~~~~l~~l-~~---~~~~~~l~~-i~~~LkpGG~l~l~  163 (247)
T PRK15451        129 VVLNFTLQFL-EP---SERQALLDK-IYQGLNPGGALVLS  163 (247)
T ss_pred             EehhhHHHhC-CH---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence            9876542221 11   112568898 79999999999875

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.29  E-value=9.2e-11  Score=97.33  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=89.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++||++|||+|.++..+++...  +|+++|+++.+++.+++++..++     .+++++.+|..+..   .++||+|+
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~---~~~fD~Vi   87 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN-----VGLDVVMTDLFKGV---RGKFDVIL   87 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC-----CceEEEEccccccc---CCcccEEE
Confidence            3567899999999999999988642  89999999999999999987542     36888999976643   35899999


Q ss_pred             EcCCCCCCCCc-c--------------cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCc
Q 025141          181 GDLADPIEGGP-C--------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKC  244 (257)
Q Consensus       181 ~D~~~~~~~~p-~--------------~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~  244 (257)
                      ++++-.....+ .              .......+++. +.+.|+|||.+++.....   .+   ...+.+.|++. |..
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~~~~~~~~~---~~---~~~~~~~l~~~gf~~  160 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDE-LPEILKEGGRVQLIQSSL---NG---EPDTFDKLDERGFRY  160 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHh-HHHhhCCCCEEEEEEecc---CC---hHHHHHHHHhCCCeE
Confidence            99763111000 0              00113568888 799999999988754221   11   23555666554 443


Q ss_pred             e
Q 025141          245 G  245 (257)
Q Consensus       245 v  245 (257)
                      .
T Consensus       161 ~  161 (179)
T TIGR00537       161 E  161 (179)
T ss_pred             E
Confidence            3

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.29  E-value=5.9e-12  Score=92.21  Aligned_cols=95  Identities=21%  Similarity=0.227  Sum_probs=73.1

Q ss_pred             EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCC
Q 025141          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (257)
Q Consensus       107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~  186 (257)
                      |+||||+|..+..++++ +..+++++|+++++++.+++...       ..+++++.+|+.+. .-.++.||+|++...-.
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~-------~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK-------NEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT-------TSTEEEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc-------ccCchheeehHHhC-cccccccccccccccee
Confidence            89999999999999998 45799999999999999999764       24566999998776 44568999999876422


Q ss_pred             CCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       187 ~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +.      ---..++++ ++|.|||||.+++
T Consensus        72 ~~------~~~~~~l~e-~~rvLk~gG~l~~   95 (95)
T PF08241_consen   72 HL------EDPEAALRE-IYRVLKPGGRLVI   95 (95)
T ss_dssp             GS------SHHHHHHHH-HHHHEEEEEEEEE
T ss_pred             ec------cCHHHHHHH-HHHHcCcCeEEeC
Confidence            21      123578899 7999999999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN03075 nicotianamine synthase; Provisional

Probab=99.27  E-value=5.7e-11  Score=105.77  Aligned_cols=109  Identities=14%  Similarity=0.188  Sum_probs=81.9

Q ss_pred             CCCCeEEEEeccchHH-HHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025141          101 PNPKTIFIMGGGEGST-AREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~-~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      ..|++|++||||.|.+ +..++ ++.+..+++++|+|++.++.||+++.. .+   -.++++|+.+|+.+... ..++||
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g---L~~rV~F~~~Da~~~~~-~l~~FD  197 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD---LSKRMFFHTADVMDVTE-SLKEYD  197 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC---ccCCcEEEECchhhccc-ccCCcC
Confidence            3789999999997743 33333 355567999999999999999999853 22   35789999999988532 246899


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|++++-..+...     .-.+.++. +++.|+|||++++..
T Consensus       198 lVF~~ALi~~dk~-----~k~~vL~~-l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        198 VVFLAALVGMDKE-----EKVKVIEH-LGKHMAPGALLMLRS  233 (296)
T ss_pred             EEEEecccccccc-----cHHHHHHH-HHHhcCCCcEEEEec
Confidence            9999954333111     13578888 799999999999875

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.27  E-value=2.3e-10  Score=100.12  Aligned_cols=126  Identities=20%  Similarity=0.215  Sum_probs=90.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||+|||+|.++..+.+. +..+|+++|+|+.+++.|++++..++   ...++.+..+|.         +||+|+
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~---~~~~~~~~~~~~---------~fD~Vv  184 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNG---VELNVYLPQGDL---------KADVIV  184 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC---CCceEEEccCCC---------CcCEEE
Confidence            46789999999999999888775 34579999999999999999987653   123445444432         799999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEeecCccc
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALFSSYSF  255 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~~~~~  255 (257)
                      .+...    .+     ...+++. +.++|+|||.+++..-.      ......+.+.+++. |..........|..
T Consensus       185 ani~~----~~-----~~~l~~~-~~~~LkpgG~lilsgi~------~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~  244 (250)
T PRK00517        185 ANILA----NP-----LLELAPD-LARLLKPGGRLILSGIL------EEQADEVLEAYEEAGFTLDEVLERGEWVA  244 (250)
T ss_pred             EcCcH----HH-----HHHHHHH-HHHhcCCCcEEEEEECc------HhhHHHHHHHHHHCCCEEEEEEEeCCEEE
Confidence            87532    11     2456777 78999999999986321      22345666777765 76666666666643

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.27  E-value=1.1e-11  Score=107.39  Aligned_cols=106  Identities=22%  Similarity=0.230  Sum_probs=73.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+|||+|||+|.++..++++ .+..+|+++|+++.+++.|++.....+    ..+++++.+|+.+. .-.+++||+|
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~l-p~~d~sfD~v  120 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAEDL-PFPDNSFDAV  120 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB---S-TT-EEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHHh-cCCCCceeEE
Confidence            45689999999999999999886 334699999999999999999876442    24999999998774 4456899999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .+...-.+  -+    --...+++ ++|+|||||.+++-
T Consensus       121 ~~~fglrn--~~----d~~~~l~E-~~RVLkPGG~l~il  152 (233)
T PF01209_consen  121 TCSFGLRN--FP----DRERALRE-MYRVLKPGGRLVIL  152 (233)
T ss_dssp             EEES-GGG---S----SHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EHHhhHHh--hC----CHHHHHHH-HHHHcCCCeEEEEe
Confidence            98653221  11    12467888 79999999988754

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02244 tocopherol O-methyltransferase

Probab=99.27  E-value=3.2e-11  Score=110.14  Aligned_cols=106  Identities=15%  Similarity=0.203  Sum_probs=82.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||||||+|.++..+++..+ .+|++||+++.+++.+++.....+   ..++++++.+|+.+. ...+++||+|+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g-~~v~gvD~s~~~i~~a~~~~~~~g---~~~~v~~~~~D~~~~-~~~~~~FD~V~  191 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQG---LSDKVSFQVADALNQ-PFEDGQFDLVW  191 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcCcccC-CCCCCCccEEE
Confidence            4568999999999999999998653 699999999999999998765432   246899999998764 23457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +......  .+    -...++++ +.++|||||.+++.
T Consensus       192 s~~~~~h--~~----d~~~~l~e-~~rvLkpGG~lvi~  222 (340)
T PLN02244        192 SMESGEH--MP----DKRKFVQE-LARVAAPGGRIIIV  222 (340)
T ss_pred             ECCchhc--cC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence            8543211  11    13578898 79999999998874

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.27  E-value=4.3e-11  Score=102.30  Aligned_cols=102  Identities=23%  Similarity=0.216  Sum_probs=79.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+..+||+||||+|..+..+++..+ ..+|++||+++++++.|++++...+    ..+++++.+|+.+... ...+||+|
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g----~~~v~~~~~d~~~~~~-~~~~fD~I  150 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG----LDNVIVIVGDGTQGWE-PLAPYDRI  150 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCeEEEECCcccCCc-ccCCCCEE
Confidence            4568999999999999998888632 3579999999999999999987542    3579999999977543 23689999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +++...+.  .|          +. +.+.|+|||++++..+
T Consensus       151 i~~~~~~~--~~----------~~-~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       151 YVTAAGPK--IP----------EA-LIDQLKEGGILVMPVG  178 (215)
T ss_pred             EEcCCccc--cc----------HH-HHHhcCcCcEEEEEEc
Confidence            99865322  11          33 4678999999998654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14967 putative methyltransferase; Provisional

Probab=99.26  E-value=2.6e-10  Score=98.01  Aligned_cols=109  Identities=16%  Similarity=0.226  Sum_probs=80.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+||++|||+|.++..+++. +..+|+++|+++.+++.+++++..++     .+++++.+|..+.+.  .++||+|+
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~~~~~~d~~~~~~--~~~fD~Vi  106 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAG-----VDVDVRRGDWARAVE--FRPFDVVV  106 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhC-----CeeEEEECchhhhcc--CCCeeEEE
Confidence            34579999999999999998886 34599999999999999999886542     358899999877643  46899999


Q ss_pred             EcCCC-CCCC------Ccc--------cCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLAD-PIEG------GPC--------YKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~-~~~~------~p~--------~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|++- +...      .+.        .......+++. +.+.|+|||++++-
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~Lk~gG~l~~~  158 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDA-APALLAPGGSLLLV  158 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHH-HHHhcCCCcEEEEE
Confidence            99752 1100      000        00012457777 78999999998874

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.26  E-value=5.5e-11  Score=105.66  Aligned_cols=130  Identities=15%  Similarity=0.185  Sum_probs=89.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDv  178 (257)
                      .+.++||++-|-+|+++..+++ .+..+|+.||++...++.+++++.+|+  ++..+++++.+|++++++.  ..++||+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg--~~~~~~~~~~~Dvf~~l~~~~~~~~fD~  198 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNG--LDLDRHRFIQGDVFKFLKRLKKGGRFDL  198 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred             cCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHHHhcCCCCCE
Confidence            3578999999999999998887 467799999999999999999999885  3457899999999999874  3579999


Q ss_pred             EEEcCCCCCCCCcccCCchH---HHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025141          179 IIGDLADPIEGGPCYKLYTK---SFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~---ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~  239 (257)
                      ||+|||.-.. +. ..+ .+   +.++. +.+.|+|||++++-+.++.  ...+.+.+.++...
T Consensus       199 IIlDPPsF~k-~~-~~~-~~~y~~L~~~-a~~ll~~gG~l~~~scs~~--i~~~~l~~~~~~~a  256 (286)
T PF10672_consen  199 IILDPPSFAK-SK-FDL-ERDYKKLLRR-AMKLLKPGGLLLTCSCSHH--ISPDFLLEAVAEAA  256 (286)
T ss_dssp             EEE--SSEES-ST-CEH-HHHHHHHHHH-HHHTEEEEEEEEEEE--TT--S-HHHHHHHHHHHH
T ss_pred             EEECCCCCCC-CH-HHH-HHHHHHHHHH-HHHhcCCCCEEEEEcCCcc--cCHHHHHHHHHHhC
Confidence            9999984211 11 111 22   34555 5789999999887666552  34444444444333

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.25  E-value=4.2e-11  Score=101.76  Aligned_cols=101  Identities=20%  Similarity=0.206  Sum_probs=77.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +..+||+||||+|..+..+++.. ...+|+++|+++++++.|++++...+   ...+++++.+|+.+.+.. ..+||+|+
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~Ii  147 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG---YWGVVEVYHGDGKRGLEK-HAPFDAII  147 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEECCcccCCcc-CCCccEEE
Confidence            45799999999999998887753 23589999999999999999886442   234799999999876543 46899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++.....       +     .+. +.+.|+|||++++..
T Consensus       148 ~~~~~~~-------~-----~~~-l~~~L~~gG~lvi~~  173 (205)
T PRK13944        148 VTAAAST-------I-----PSA-LVRQLKDGGVLVIPV  173 (205)
T ss_pred             EccCcch-------h-----hHH-HHHhcCcCcEEEEEE
Confidence            9865321       1     134 567899999998865

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.25  E-value=5.4e-11  Score=104.82  Aligned_cols=109  Identities=14%  Similarity=0.022  Sum_probs=80.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+|||||||+|.++..+++. .+..+|+++|+++++++.|++....... ...++++++.+|+.+. .-.++.||+|
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~-~~~~~i~~~~~d~~~l-p~~~~sfD~V  149 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK-SCYKNIEWIEGDATDL-PFDDCYFDAI  149 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-ccCCCeEEEEcccccC-CCCCCCEeEE
Confidence            45679999999999999888875 3346999999999999999987542110 1235899999998663 3345789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++...-.+.  +    --..++++ +.++|||||.+++-
T Consensus       150 ~~~~~l~~~--~----d~~~~l~e-i~rvLkpGG~l~i~  181 (261)
T PLN02233        150 TMGYGLRNV--V----DRLKAMQE-MYRVLKPGSRVSIL  181 (261)
T ss_pred             EEecccccC--C----CHHHHHHH-HHHHcCcCcEEEEE
Confidence            986542221  1    12578898 79999999988764

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.25  E-value=2.9e-10  Score=94.57  Aligned_cols=148  Identities=19%  Similarity=0.226  Sum_probs=102.4

Q ss_pred             EEEEEecCCeeEE-EEcCcccccCCCchhHHHHHHHHHhhc-CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHH
Q 025141           60 IALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLH-HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEE  137 (257)
Q Consensus        60 i~v~~~~~~g~~L-~ldG~~~~~~~~~~~y~e~l~~~~l~~-~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~  137 (257)
                      ++|+-.+..||.| +.+|.  ...|....-.|.+.. .+.. .-...++||+-+|+|+++.|++.. +..+++.||.|.+
T Consensus         2 mRIi~G~~kgr~L~~p~~~--~~RPT~drVREalFN-il~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~   77 (187)
T COG0742           2 MRIIGGKYKGRKLKTPDGP--GTRPTTDRVREALFN-ILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRK   77 (187)
T ss_pred             eEEEeccccCCcccCCCCC--CcCCCchHHHHHHHH-hccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHH
Confidence            4555555556655 34442  112222233455542 2222 246789999999999999999996 5789999999999


Q ss_pred             HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCc--eeEEEEcCCCCCCCCcccCCc--hHHHHHHHHcCcCCCCc
Q 025141          138 VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES--YDVIIGDLADPIEGGPCYKLY--TKSFYEFVVKPRLNPEG  213 (257)
Q Consensus       138 vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~--fDvIi~D~~~~~~~~p~~~L~--t~ef~~~~~~~~L~pgG  213 (257)
                      +..+.+++....+   ...+.+++..|+..+++....+  ||+|++|||-..      .+.  ........-...|+|+|
T Consensus        78 a~~~l~~N~~~l~---~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~------~l~~~~~~~~~~~~~~~L~~~~  148 (187)
T COG0742          78 AVKILKENLKALG---LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAK------GLLDKELALLLLEENGWLKPGA  148 (187)
T ss_pred             HHHHHHHHHHHhC---CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCcc------chhhHHHHHHHHHhcCCcCCCc
Confidence            9999999987442   3478999999999998876655  999999997432      222  12222210257899999


Q ss_pred             EEEEecC
Q 025141          214 IFVTQAG  220 (257)
Q Consensus       214 il~~~~~  220 (257)
                      ++++...
T Consensus       149 ~iv~E~~  155 (187)
T COG0742         149 LIVVEHD  155 (187)
T ss_pred             EEEEEeC
Confidence            9999864

>PLN02672 methionine S-methyltransferase

Probab=99.25  E-value=3.1e-10  Score=115.84  Aligned_cols=141  Identities=18%  Similarity=0.135  Sum_probs=97.3

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC------------CCCCCeEEEEcchHHHHh
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA------------FSDPRLELVINDARAELE  170 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~------------~~~~rv~i~~~Da~~~l~  170 (257)
                      +++|||||||+|.++..+++..+..+|+++|+++++++.|+++...++-.            ....|++++.+|..+.++
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            46899999999999999988655579999999999999999998754210            112589999999988875


Q ss_pred             cCCCceeEEEEcCCC-CCC-----------CC---------cccCCch-----------HHHHHHHHcCcCCCCcEEEEe
Q 025141          171 SRKESYDVIIGDLAD-PIE-----------GG---------PCYKLYT-----------KSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       171 ~~~~~fDvIi~D~~~-~~~-----------~~---------p~~~L~t-----------~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ....+||+|++++|- +..           ..         |...|+.           +.++.. +.+.|+|||.++++
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~-a~~~L~pgG~l~lE  277 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEE-GISVIKPMGIMIFN  277 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHH-HHHhccCCCEEEEE
Confidence            433479999999971 110           01         1123332           344455 46899999999999


Q ss_pred             cCCCCCCCChHHHH-HHHHHHhhhCCceEEEee
Q 025141          219 AGPAGIFSHTEVFS-CIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       219 ~~~~~~~~~~~~~~-~~~~~l~~~F~~v~~~~~  250 (257)
                      .+.    .+.+... ++++.  .-|..+..|.+
T Consensus       278 iG~----~q~~~v~~~l~~~--~gf~~~~~~~~  304 (1082)
T PLN02672        278 MGG----RPGQAVCERLFER--RGFRITKLWQT  304 (1082)
T ss_pred             ECc----cHHHHHHHHHHHH--CCCCeeEEeee
Confidence            863    2333333 23332  23777776654

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=7.8e-11  Score=99.48  Aligned_cols=100  Identities=25%  Similarity=0.300  Sum_probs=82.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+||+||+|+|..+.-+++..  .+|+.||++++..+.|++++...+    -.++.++++|+...... ..+||.|+
T Consensus        71 ~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg----~~nV~v~~gDG~~G~~~-~aPyD~I~  143 (209)
T COG2518          71 KPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLG----YENVTVRHGDGSKGWPE-EAPYDRII  143 (209)
T ss_pred             CCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcC----CCceEEEECCcccCCCC-CCCcCEEE
Confidence            456899999999999999999974  499999999999999999987553    34699999999887643 47899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +.+.-+.  .|          +. +.+.|+|||++++-.+
T Consensus       144 Vtaaa~~--vP----------~~-Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         144 VTAAAPE--VP----------EA-LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             EeeccCC--CC----------HH-HHHhcccCCEEEEEEc
Confidence            9987543  34          23 4568999999998766

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.24  E-value=7.8e-11  Score=100.68  Aligned_cols=102  Identities=24%  Similarity=0.243  Sum_probs=78.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+..+||+||||+|..+..+++.. ...+|+++|+++++++.+++++...+    -.+++++.+|+..... ...+||+|
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~~~~~~-~~~~fD~I  149 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDGTLGYE-ENAPYDRI  149 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-cCCCcCEE
Confidence            456899999999999998887753 23699999999999999999887442    3579999999876542 24689999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +++..-+.  .          .+. +.+.|+|||++++..+
T Consensus       150 ~~~~~~~~--~----------~~~-l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        150 YVTAAGPD--I----------PKP-LIEQLKDGGIMVIPVG  177 (212)
T ss_pred             EECCCccc--c----------hHH-HHHhhCCCcEEEEEEc
Confidence            99864221  1          134 4668999999988654

>PRK04266 fibrillarin; Provisional

Probab=99.22  E-value=2.5e-10  Score=98.54  Aligned_cols=138  Identities=15%  Similarity=0.146  Sum_probs=93.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--hcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l--~~~~~~fDv  178 (257)
                      .+..+|||+|||+|.++..+++..+..+|+++|+++.+++.+++....      .+++.++.+|+....  ....++||+
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l~~~~D~  144 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHVVEKVDV  144 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhccccCCE
Confidence            355799999999999999998864345899999999999877765431      257889999986421  111356999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC--CCCCC-CChHHHHHHHHHHhhh-CCceEEEeecCc
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG--PAGIF-SHTEVFSCIYNTLRQV-FKCGCCALFSSY  253 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~--~~~~~-~~~~~~~~~~~~l~~~-F~~v~~~~~~~~  253 (257)
                      |++|..+++  .      ...+++. +++.|||||.+++...  +..+. .....++...+.+++. |..+.....+++
T Consensus       145 i~~d~~~p~--~------~~~~L~~-~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~  214 (226)
T PRK04266        145 IYQDVAQPN--Q------AEIAIDN-AEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPY  214 (226)
T ss_pred             EEECCCChh--H------HHHHHHH-HHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence            999876433  1      1345677 7899999999887321  11100 1123445566777766 777776666555

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.21  E-value=7.1e-11  Score=106.91  Aligned_cols=104  Identities=13%  Similarity=0.191  Sum_probs=80.3

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +..+|||||||+|..+..+++. + .+|++||+++++++.|++++....   ...+++++.+|+.+.. ...++||+|++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~-g-~~V~GID~s~~~i~~Ar~~~~~~~---~~~~i~~~~~dae~l~-~~~~~FD~Vi~  204 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM-G-ATVTGVDAVDKNVKIARLHADMDP---VTSTIEYLCTTAEKLA-DEGRKFDAVLS  204 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHhcC---cccceeEEecCHHHhh-hccCCCCEEEE
Confidence            3468999999999999888774 3 689999999999999998865432   2358999999987753 33578999998


Q ss_pred             cCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       182 D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      -.. .+. ..      -.+|++. ++++|||||.+++..
T Consensus       205 ~~vLeHv-~d------~~~~L~~-l~r~LkPGG~liist  235 (322)
T PLN02396        205 LEVIEHV-AN------PAEFCKS-LSALTIPNGATVLST  235 (322)
T ss_pred             hhHHHhc-CC------HHHHHHH-HHHHcCCCcEEEEEE
Confidence            543 221 11      2478898 799999999998764

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.20  E-value=1e-10  Score=98.84  Aligned_cols=103  Identities=13%  Similarity=0.124  Sum_probs=77.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++.+||++|||.|..+..+++. + .+|+++|+++.+++.+++.....+    ..+++++..|..++  ...++||+|++
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~-g-~~V~gvD~S~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~--~~~~~fD~I~~  101 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAAN-G-FDVTAWDKNPMSIANLERIKAAEN----LDNLHTAVVDLNNL--TFDGEYDFILS  101 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHHcC----CCcceEEecChhhC--CcCCCcCEEEE
Confidence            5689999999999999999985 3 599999999999999998876432    24688899997664  22467999998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ...-... .+   -....+++. +++.|+|||.+++
T Consensus       102 ~~~~~~~-~~---~~~~~~l~~-i~~~LkpgG~~~~  132 (197)
T PRK11207        102 TVVLMFL-EA---KTIPGLIAN-MQRCTKPGGYNLI  132 (197)
T ss_pred             ecchhhC-CH---HHHHHHHHH-HHHHcCCCcEEEE
Confidence            7542221 11   123578888 7999999998543

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.20  E-value=8.2e-11  Score=98.38  Aligned_cols=109  Identities=19%  Similarity=0.302  Sum_probs=80.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fD  177 (257)
                      .+..+|||+.+|+|+++.|++.+ +..+|+.||.|+..++..++++...+   ...+++++..|+..++..   ...+||
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~---~~~~~~v~~~d~~~~l~~~~~~~~~fD  116 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLG---LEDKIRVIKGDAFKFLLKLAKKGEKFD  116 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred             cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhC---CCcceeeeccCHHHHHHhhcccCCCce
Confidence            46789999999999999999985 67899999999999999999987432   234799999999998865   368999


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHH--cCcCCCCcEEEEecC
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAG  220 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~--~~~L~pgGil~~~~~  220 (257)
                      +|++|||-..      .++-.+.++. +  ...|+++|++++...
T Consensus       117 iIflDPPY~~------~~~~~~~l~~-l~~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen  117 IIFLDPPYAK------GLYYEELLEL-LAENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             EEEE--STTS------CHHHHHHHHH-HHHTTSEEEEEEEEEEEE
T ss_pred             EEEECCCccc------chHHHHHHHH-HHHCCCCCCCEEEEEEec
Confidence            9999987322      1112344554 3  489999999999864

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.20  E-value=2.7e-10  Score=99.29  Aligned_cols=144  Identities=19%  Similarity=0.233  Sum_probs=96.6

Q ss_pred             chhHHHHHHHHH-hhcCCCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE
Q 025141           85 EFIYHESLVHPA-LLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI  162 (257)
Q Consensus        85 ~~~y~e~l~~~~-l~~~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~  162 (257)
                      .-+|..-+..+. .+-..++.+||+.|.|+|+++..+++. .+..+|...|+.++-.+.|+++|...+   ...++++++
T Consensus        22 QIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---l~~~v~~~~   98 (247)
T PF08704_consen   22 QIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---LDDNVTVHH   98 (247)
T ss_dssp             ----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT---CCTTEEEEE
T ss_pred             ceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC---CCCCceeEe
Confidence            345654333222 223456789999999999999999974 445799999999999999999998653   356999999


Q ss_pred             cchHH-HH-hcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcC-CCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025141          163 NDARA-EL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (257)
Q Consensus       163 ~Da~~-~l-~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L-~pgGil~~~~~~~~~~~~~~~~~~~~~~l~  239 (257)
                      .|..+ -. ......+|.|++|.++||..           +.. +++.| ++||++++..  |+    -+........|+
T Consensus        99 ~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~-----------i~~-~~~~L~~~gG~i~~fs--P~----ieQv~~~~~~L~  160 (247)
T PF08704_consen   99 RDVCEEGFDEELESDFDAVFLDLPDPWEA-----------IPH-AKRALKKPGGRICCFS--PC----IEQVQKTVEALR  160 (247)
T ss_dssp             S-GGCG--STT-TTSEEEEEEESSSGGGG-----------HHH-HHHHE-EEEEEEEEEE--SS----HHHHHHHHHHHH
T ss_pred             cceecccccccccCcccEEEEeCCCHHHH-----------HHH-HHHHHhcCCceEEEEC--CC----HHHHHHHHHHHH
Confidence            99853 22 22346899999999998832           345 68889 8999999874  32    344556667777


Q ss_pred             hh-CCceEEEe
Q 025141          240 QV-FKCGCCAL  249 (257)
Q Consensus       240 ~~-F~~v~~~~  249 (257)
                      +. |..+..+.
T Consensus       161 ~~gf~~i~~~E  171 (247)
T PF08704_consen  161 EHGFTDIETVE  171 (247)
T ss_dssp             HTTEEEEEEEE
T ss_pred             HCCCeeeEEEE
Confidence            63 66665443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.20  E-value=1.1e-10  Score=99.51  Aligned_cols=128  Identities=21%  Similarity=0.319  Sum_probs=90.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH------h-cC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL------E-SR  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l------~-~~  172 (257)
                      .+..+|||||||+|..+..+++.. +..+|++||+++.           .    ..++++++.+|+.+.-      . ..
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~----~~~~v~~i~~D~~~~~~~~~i~~~~~  114 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------D----PIVGVDFLQGDFRDELVLKALLERVG  114 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------c----CCCCcEEEecCCCChHHHHHHHHHhC
Confidence            456799999999999999988863 3358999999981           1    1256899999987641      1 13


Q ss_pred             CCceeEEEEcCCCCCCCCcccC-C----chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025141          173 KESYDVIIGDLADPIEGGPCYK-L----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC  247 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~-L----~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  247 (257)
                      .+.||+|++|....+...+... .    ...++++. +.+.|+|||.+++..     + ..+.+.+++..+++.|..+.+
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~-~~~~LkpGG~~vi~~-----~-~~~~~~~~l~~l~~~f~~v~~  187 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDM-CRDVLAPGGSFVVKV-----F-QGEGFDEYLREIRSLFTKVKV  187 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEE-----e-cCcCHHHHHHHHHhCceEEEE
Confidence            4789999999743221111100 0    12467888 799999999999853     1 233466778889999999988


Q ss_pred             Eee
Q 025141          248 ALF  250 (257)
Q Consensus       248 ~~~  250 (257)
                      +..
T Consensus       188 ~Kp  190 (209)
T PRK11188        188 RKP  190 (209)
T ss_pred             ECC
Confidence            765

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.20  E-value=6.7e-11  Score=101.28  Aligned_cols=104  Identities=15%  Similarity=0.197  Sum_probs=79.4

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~  183 (257)
                      ++||+||||.|..+..+++..+..+++++|+++++++.+++++...+   ..++++++..|..+..  ..++||+|++..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g---l~~~i~~~~~d~~~~~--~~~~fD~I~~~~   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG---LQGRIRIFYRDSAKDP--FPDTYDLVFGFE   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEecccccCC--CCCCCCEeehHH
Confidence            58999999999999999886544689999999999999999876432   3468999999975431  246899999754


Q ss_pred             CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .-..  .+  .  ...+++. +++.|+|||.+++..
T Consensus        76 ~l~~--~~--~--~~~~l~~-~~~~LkpgG~l~i~~  104 (224)
T smart00828       76 VIHH--IK--D--KMDLFSN-ISRHLKDGGHLVLAD  104 (224)
T ss_pred             HHHh--CC--C--HHHHHHH-HHHHcCCCCEEEEEE
Confidence            3211  11  1  3578998 799999999998753

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.20  E-value=2.4e-11  Score=91.41  Aligned_cols=96  Identities=24%  Similarity=0.427  Sum_probs=71.0

Q ss_pred             EEEEeccchHHHHHHHhcC---CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE-
Q 025141          106 IFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG-  181 (257)
Q Consensus       106 VL~IG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~-  181 (257)
                      ||++|||+|..++.+.+..   +..++++||+++++++.+++++...     ..+++++.+|+.++ ....++||+|++ 
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l-~~~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDL-PFSDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCH-HHHSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHC-cccCCCeeEEEEc
Confidence            7999999999999999763   2269999999999999999987643     24899999999884 445679999999 


Q ss_pred             cC-CCCCCCCcccCCchHHHHHHHHcCcCCCCc
Q 025141          182 DL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEG  213 (257)
Q Consensus       182 D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG  213 (257)
                      .. ....  .+   -....+++. +.++|+|||
T Consensus        75 ~~~~~~~--~~---~~~~~ll~~-~~~~l~pgG  101 (101)
T PF13649_consen   75 GLSLHHL--SP---EELEALLRR-IARLLRPGG  101 (101)
T ss_dssp             TTGGGGS--SH---HHHHHHHHH-HHHTEEEEE
T ss_pred             CCccCCC--CH---HHHHHHHHH-HHHHhCCCC
Confidence            33 2211  11   113578888 799999998

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.19  E-value=3.1e-10  Score=95.79  Aligned_cols=126  Identities=18%  Similarity=0.201  Sum_probs=97.4

Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeEEEEc
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVIIGD  182 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDvIi~D  182 (257)
                      -+|+||||.|..+.++++..+...+.++|+....+..+.+.....    .-+++.++.+||..++..  .++..|-|.+.
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence            799999999999999888766789999999999999888877544    357999999999998865  34789999999


Q ss_pred             CCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          183 LADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       183 ~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      -|+||....  ...|.+.+|+.. ++++|+|||.+.+.+.      ....+..+.+.+.+.
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~-~~~~L~~gG~l~~~TD------~~~y~~~~~~~~~~~  149 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLEL-LARVLKPGGELYFATD------VEEYAEWMLEQFEES  149 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHH-HHHHEEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred             CCCCCcccchhhhhcCCchHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhc
Confidence            999984221  247899999999 8999999999988763      356777788888875

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00740 methyltransferase, putative

Probab=99.19  E-value=2.3e-10  Score=99.17  Aligned_cols=108  Identities=19%  Similarity=0.290  Sum_probs=80.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ++..+|||||||+|..+..++++  .+..+++++|+++.+++.|++++....   ...+++++.+|+.++-   .+.+|+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~d~  125 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE---IKNASM  125 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC---CCCCCE
Confidence            45678999999999999988874  235799999999999999999875321   2457999999987652   245898


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |++...-++. .+   -....+++. ++++|+|||.+++..
T Consensus       126 v~~~~~l~~~-~~---~~~~~~l~~-i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       126 VILNFTLQFL-PP---EDRIALLTK-IYEGLNPNGVLVLSE  161 (239)
T ss_pred             EeeecchhhC-CH---HHHHHHHHH-HHHhcCCCeEEEEee
Confidence            8876542221 11   012578898 799999999998753

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.18  E-value=9e-10  Score=92.57  Aligned_cols=107  Identities=19%  Similarity=0.103  Sum_probs=82.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~fDv  178 (257)
                      ..++|||++||+|+++.+++.+ +..+|++||+|+..++.+++++..++   ...+++++.+|+.++++..   ...||+
T Consensus        49 ~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~---~~~~~~~~~~D~~~~l~~~~~~~~~~dv  124 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLK---SGEQAEVVRNSALRALKFLAKKPTFDNV  124 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhC---CcccEEEEehhHHHHHHHhhccCCCceE
Confidence            5689999999999999999996 45699999999999999999987653   2347999999999988642   234899


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHH-cCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGil~~~~  219 (257)
                      |++|||-..      .+ ..+.+..+. ...|+++|++++..
T Consensus       125 v~~DPPy~~------~~-~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       125 IYLDPPFFN------GA-LQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             EEECcCCCC------Cc-HHHHHHHHHHCCCCCCCeEEEEEe
Confidence            999987422      11 233333311 46899999999875

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.17  E-value=9.8e-11  Score=100.40  Aligned_cols=103  Identities=17%  Similarity=0.216  Sum_probs=77.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ...++|||+|||+|.++..+++. + .+|+++|++++.++.|+.+...+.     -.++.......+.... .++||+|+
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~-G-a~VtgiD~se~~I~~Ak~ha~e~g-----v~i~y~~~~~edl~~~-~~~FDvV~  129 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL-G-ASVTGIDASEKPIEVAKLHALESG-----VNIDYRQATVEDLASA-GGQFDVVT  129 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC-C-CeeEEecCChHHHHHHHHhhhhcc-----ccccchhhhHHHHHhc-CCCccEEE
Confidence            36789999999999999999996 4 799999999999999999876442     2345666666555433 48999998


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +--- .+. ..|      ..|++. +.+++||||++++..
T Consensus       130 cmEVlEHv-~dp------~~~~~~-c~~lvkP~G~lf~ST  161 (243)
T COG2227         130 CMEVLEHV-PDP------ESFLRA-CAKLVKPGGILFLST  161 (243)
T ss_pred             EhhHHHcc-CCH------HHHHHH-HHHHcCCCcEEEEec
Confidence            7532 222 122      358888 699999999998753

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.17  E-value=8e-12  Score=93.44  Aligned_cols=98  Identities=18%  Similarity=0.226  Sum_probs=59.1

Q ss_pred             EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCC
Q 025141          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLAD  185 (257)
Q Consensus       107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~  185 (257)
                      |+||||+|..+..++...+..+++++|+++.+++.+++.+....    ..+......+..+..... .++||+|++-..-
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl   76 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG----NDNFERLRFDVLDLFDYDPPESFDLVVASNVL   76 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CcceeEEEeecCChhhcccccccceehhhhhH
Confidence            79999999999999987566899999999999998988876431    122233332222222222 2699999987543


Q ss_pred             CCCCCcccCCchHHHHHHHHcCcCCCCcEE
Q 025141          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIF  215 (257)
Q Consensus       186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGil  215 (257)
                      ++.  +    ...++++. +++.|+|||++
T Consensus        77 ~~l--~----~~~~~l~~-~~~~L~pgG~l   99 (99)
T PF08242_consen   77 HHL--E----DIEAVLRN-IYRLLKPGGIL   99 (99)
T ss_dssp             S----S-----HHHHHHH-HTTT-TSS-EE
T ss_pred             hhh--h----hHHHHHHH-HHHHcCCCCCC
Confidence            321  1    13588998 79999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.17  E-value=1.4e-09  Score=96.03  Aligned_cols=133  Identities=14%  Similarity=0.132  Sum_probs=92.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ++.+|||+|||.|+.+..++... +...|+++|+++..++.+++++...+    -.+++++..|++.+.. ..+.||+|+
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~-~~~~fD~Vl  145 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG----VLNVAVTNFDGRVFGA-AVPKFDAIL  145 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEecCCHHHhhh-hccCCCEEE
Confidence            45789999999999998887753 23589999999999999999987553    2469999999987643 235699999


Q ss_pred             EcCCCCCC----CCccc-------CC-----chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCc
Q 025141          181 GDLADPIE----GGPCY-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC  244 (257)
Q Consensus       181 ~D~~~~~~----~~p~~-------~L-----~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~  244 (257)
                      +|++-...    ..|..       .+     ...++++. +.+.|+|||+++..+.+.    .++..+.+++.+.+.++.
T Consensus       146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvYstcs~----~~~Ene~vv~~~l~~~~~  220 (264)
T TIGR00446       146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDS-AFDALKPGGVLVYSTCSL----EPEENEAVVDYLLEKRPD  220 (264)
T ss_pred             EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCCC----ChHHHHHHHHHHHHhCCC
Confidence            99873211    11110       00     23567887 789999999998654332    233345555555555543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.16  E-value=1.2e-09  Score=102.83  Aligned_cols=136  Identities=16%  Similarity=0.125  Sum_probs=93.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+|||+|||.|+.+..++... +..+|+++|+++..++.+++++...+    -.+++++.+|+..+-....++||.|
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~~l~~~~~~~fD~V  311 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAERLTEYVQDTFDRI  311 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhhhhhhhhccCCEE
Confidence            345789999999999998888753 34699999999999999999987442    2468999999987643335689999


Q ss_pred             EEcCCCCCC----CCccc--C--------C--chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q 025141          180 IGDLADPIE----GGPCY--K--------L--YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (257)
Q Consensus       180 i~D~~~~~~----~~p~~--~--------L--~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~  243 (257)
                      ++|++-...    ..|..  .        +  ...+.+.. +.+.|+|||+++.-+.+.   . ++.....++.+-+.+|
T Consensus       312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs~---~-~eEne~vv~~fl~~~~  386 (431)
T PRK14903        312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQ-AWKLLEKGGILLYSTCTV---T-KEENTEVVKRFVYEQK  386 (431)
T ss_pred             EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC---C-hhhCHHHHHHHHHhCC
Confidence            999874211    01100  0        0  23567777 689999999998765443   2 3334444444434344


Q ss_pred             ce
Q 025141          244 CG  245 (257)
Q Consensus       244 ~v  245 (257)
                      ..
T Consensus       387 ~~  388 (431)
T PRK14903        387 DA  388 (431)
T ss_pred             Cc
Confidence            33

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.16  E-value=3.4e-10  Score=96.98  Aligned_cols=103  Identities=19%  Similarity=0.298  Sum_probs=80.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++||+||||+|..+..+++..+..+++++|+++.+++.+++.+.        ++++++.+|..+.. ..+++||+|+
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~-~~~~~fD~vi  103 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP-LEDSSFDLIV  103 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC-CCCCceeEEE
Confidence            34679999999999999999887555689999999999999988653        37889999987653 2357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++..-++...      ...+++. +++.|+|||.+++..
T Consensus       104 ~~~~l~~~~~------~~~~l~~-~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       104 SNLALQWCDD------LSQALSE-LARVLKPGGLLAFST  135 (240)
T ss_pred             EhhhhhhccC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence            9865433111      2468888 799999999998764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.16  E-value=1.3e-10  Score=99.20  Aligned_cols=102  Identities=25%  Similarity=0.332  Sum_probs=75.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+..+||+||+|+|..+..+++. .+..+|++||+++.+++.|++++...+    ..+++++++|+..-... ..+||.|
T Consensus        71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~gdg~~g~~~-~apfD~I  145 (209)
T PF01135_consen   71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG----IDNVEVVVGDGSEGWPE-EAPFDRI  145 (209)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEES-GGGTTGG-G-SEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----cCceeEEEcchhhcccc-CCCcCEE
Confidence            45689999999999999888875 334579999999999999999987542    35899999999876543 4689999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ++...-+.  .|          .. +.+.|++||++++-.+
T Consensus       146 ~v~~a~~~--ip----------~~-l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  146 IVTAAVPE--IP----------EA-LLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             EESSBBSS--------------HH-HHHTEEEEEEEEEEES
T ss_pred             EEeeccch--HH----------HH-HHHhcCCCcEEEEEEc
Confidence            99876432  23          22 3457999999998654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.15  E-value=1.6e-10  Score=102.43  Aligned_cols=105  Identities=20%  Similarity=0.257  Sum_probs=76.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|||||||.|+++..+++..+ .+|++|.++++..+.+++.....+   ...++++...|.+++    +.+||.|+
T Consensus        61 ~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~g---l~~~v~v~~~D~~~~----~~~fD~Iv  132 (273)
T PF02353_consen   61 KPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAG---LEDRVEVRLQDYRDL----PGKFDRIV  132 (273)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST---SSSTEEEEES-GGG-------S-SEEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEeecccc----CCCCCEEE
Confidence            4568999999999999999999765 699999999999999999886443   346899999997664    34999988


Q ss_pred             EcC-CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +-- +.+.  ++   -.-..||+. +.+.|+|||+++++.
T Consensus       133 Si~~~Ehv--g~---~~~~~~f~~-~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  133 SIEMFEHV--GR---KNYPAFFRK-ISRLLKPGGRLVLQT  166 (273)
T ss_dssp             EESEGGGT--CG---GGHHHHHHH-HHHHSETTEEEEEEE
T ss_pred             EEechhhc--Ch---hHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            753 2222  11   123688999 799999999999875

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=2.8e-10  Score=101.22  Aligned_cols=131  Identities=18%  Similarity=0.165  Sum_probs=92.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||+|||+|.++..+++. +..+|.++|+||..++.|++++.+|+.   .+.++.-..+.....  ..++||+|+
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v---~~~~~~~~~~~~~~~--~~~~~DvIV  234 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGV---ELLVQAKGFLLLEVP--ENGPFDVIV  234 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCC---chhhhcccccchhhc--ccCcccEEE
Confidence            47899999999999999999997 568999999999999999999988752   112222222222222  236899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHH-hhhCCceEEEeecCc
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL-RQVFKCGCCALFSSY  253 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l-~~~F~~v~~~~~~~~  253 (257)
                      .+.-.    .|     -..+... +++.|+|||.+++..     ... +....+.+.+ ++-|..+....-+-|
T Consensus       235 ANILA----~v-----l~~La~~-~~~~lkpgg~lIlSG-----Il~-~q~~~V~~a~~~~gf~v~~~~~~~eW  292 (300)
T COG2264         235 ANILA----EV-----LVELAPD-IKRLLKPGGRLILSG-----ILE-DQAESVAEAYEQAGFEVVEVLEREEW  292 (300)
T ss_pred             ehhhH----HH-----HHHHHHH-HHHHcCCCceEEEEe-----ehH-hHHHHHHHHHHhCCCeEeEEEecCCE
Confidence            98642    22     1355667 688999999999854     222 2355666777 456877777665555

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.15  E-value=2.2e-10  Score=101.03  Aligned_cols=105  Identities=20%  Similarity=0.261  Sum_probs=79.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+||+||||+|..+..+++..+ .+|+++|+++.+++.|++.+..      .++++++.+|+.+. ...+++||+|+
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~-~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~-~~~~~~FD~V~  122 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYG-AHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK-DFPENTFDMIY  122 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcC-CEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC-CCCCCCeEEEE
Confidence            4567999999999999998877543 5999999999999999987642      35899999997642 12346899999


Q ss_pred             Ec-CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +. ...+.  ..   --...+++. +++.|||||.+++..
T Consensus       123 s~~~l~h~--~~---~d~~~~l~~-i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        123 SRDAILHL--SY---ADKKKLFEK-CYKWLKPNGILLITD  156 (263)
T ss_pred             EhhhHHhC--CH---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            84 33221  10   013578888 799999999998754

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.15  E-value=1.2e-09  Score=103.28  Aligned_cols=115  Identities=23%  Similarity=0.170  Sum_probs=85.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+..+|||+|||+|+.+..++++. +..+|+++|+++..++.+++++...+    -.+++++.+|+.++.....++||+|
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~~~~~~fD~V  324 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG----LTNIETKALDARKVHEKFAEKFDKI  324 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCCcccccchhcccCCEE
Confidence            345789999999999999888753 34699999999999999999987542    2359999999988653333689999


Q ss_pred             EEcCCCCCC----CCcccC-------C-----chHHHHHHHHcCcCCCCcEEEEecC
Q 025141          180 IGDLADPIE----GGPCYK-------L-----YTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       180 i~D~~~~~~----~~p~~~-------L-----~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ++|++-...    ..|...       +     ...++++. +.+.|+|||.++..+.
T Consensus       325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvystc  380 (444)
T PRK14902        325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILES-VAQYLKKGGILVYSTC  380 (444)
T ss_pred             EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEcC
Confidence            999873210    011100       0     12467888 7899999999986543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.15  E-value=3.9e-10  Score=99.54  Aligned_cols=106  Identities=20%  Similarity=0.250  Sum_probs=79.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.++||+||||+|..+..+++.. ...+|+++|+++.+++.|+++....+    -++++++.+|+.+. ...++.||+|
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g----~~~v~~~~~d~~~l-~~~~~~fD~V  150 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG----YTNVEFRLGEIEAL-PVADNSVDVI  150 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC----CCCEEEEEcchhhC-CCCCCceeEE
Confidence            456899999999999877766642 33589999999999999999875432    25889999997653 3334689999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +++..-..  .+    -....+++ +.++|+|||.+++.
T Consensus       151 i~~~v~~~--~~----d~~~~l~~-~~r~LkpGG~l~i~  182 (272)
T PRK11873        151 ISNCVINL--SP----DKERVFKE-AFRVLKPGGRFAIS  182 (272)
T ss_pred             EEcCcccC--CC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence            98864222  11    12467888 79999999999874

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.14  E-value=5.6e-10  Score=97.39  Aligned_cols=99  Identities=13%  Similarity=0.142  Sum_probs=76.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++.+|||||||+|.++..+.+. + .+++++|+++.+++.+++...         ...++.+|+... ...+++||+|++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~-~~~~~~fD~V~s  109 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER-G-SQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESL-PLATATFDLAWS  109 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc-C-CeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccC-cCCCCcEEEEEE
Confidence            4679999999999999888774 3 699999999999999998642         236788887653 234568999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +..-.+...      ..+++.+ +.+.|+|||.+++..
T Consensus       110 ~~~l~~~~d------~~~~l~~-~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        110 NLAVQWCGN------LSTALRE-LYRVVRPGGVVAFTT  140 (251)
T ss_pred             CchhhhcCC------HHHHHHH-HHHHcCCCeEEEEEe
Confidence            875443211      2577888 799999999998764

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.13  E-value=1.7e-09  Score=102.24  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=84.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++++|||+|||+|+.+..++++. +..+|+++|+++..++.+++++...+    -.+++++.+|+..+.  ..++||+|
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g----~~~v~~~~~Da~~~~--~~~~fD~V  322 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG----ITIIETIEGDARSFS--PEEQPDAI  322 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC----CCeEEEEeCcccccc--cCCCCCEE
Confidence            345799999999999888777642 33589999999999999999987542    247999999998875  34679999


Q ss_pred             EEcCCCCCC----CCcc--cCC----------chHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          180 IGDLADPIE----GGPC--YKL----------YTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       180 i~D~~~~~~----~~p~--~~L----------~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      ++|++-...    ..|.  +.+          ...+++.. +.+.|+|||+++..+.+.
T Consensus       323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDH-AASLLKPGGVLVYATCSI  380 (445)
T ss_pred             EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC
Confidence            999873211    0111  011          12357888 789999999999876543

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.11  E-value=7.1e-10  Score=92.76  Aligned_cols=128  Identities=20%  Similarity=0.227  Sum_probs=85.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-----Hh--cC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LE--SR  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-----l~--~~  172 (257)
                      ++.++||+||||+|.++..+++.. +..+|+++|+++..        .       .++++++.+|..+.     +.  ..
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~   95 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG   95 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence            466899999999999998887753 44689999999854        1       14577888886542     11  12


Q ss_pred             CCceeEEEEcCCCCCCCCcc-cCCc----hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025141          173 KESYDVIIGDLADPIEGGPC-YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC  247 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~-~~L~----t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  247 (257)
                      .++||+|++|...+....+. .++.    ...+++. +.+.|+|||.+++....      ...+..++..++..|..+..
T Consensus        96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lvi~~~~------~~~~~~~l~~l~~~~~~~~~  168 (188)
T TIGR00438        96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDI-AKEVLKPKGNFVVKVFQ------GEEIDEYLNELRKLFEKVKV  168 (188)
T ss_pred             CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHH-HHHHccCCCEEEEEEcc------CccHHHHHHHHHhhhceEEE
Confidence            46799999986422110110 0111    2467888 79999999999986421      23355777888888877766


Q ss_pred             Eee
Q 025141          248 ALF  250 (257)
Q Consensus       248 ~~~  250 (257)
                      +..
T Consensus       169 ~~~  171 (188)
T TIGR00438       169 TKP  171 (188)
T ss_pred             eCC
Confidence            554

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.11  E-value=1.8e-10  Score=102.87  Aligned_cols=130  Identities=18%  Similarity=0.209  Sum_probs=88.8

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ..+.++|||+|||+|.++..+++. +..+|+++|+||..++.|+++..+|+   -..++++.  ...+.   ..++||+|
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~---~~~~~~v~--~~~~~---~~~~~dlv  229 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNG---VEDRIEVS--LSEDL---VEGKFDLV  229 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT----TTCEEES--CTSCT---CCS-EEEE
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcC---CCeeEEEE--Eeccc---ccccCCEE
Confidence            345689999999999999999996 67899999999999999999998875   23466553  11111   23899999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCcc
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYS  254 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~  254 (257)
                      +.+....    +   |  .+.... +.+.|+|||.+++-.     ... .....+.+.+++-|..+..-....|.
T Consensus       230 vANI~~~----v---L--~~l~~~-~~~~l~~~G~lIlSG-----Il~-~~~~~v~~a~~~g~~~~~~~~~~~W~  288 (295)
T PF06325_consen  230 VANILAD----V---L--LELAPD-IASLLKPGGYLILSG-----ILE-EQEDEVIEAYKQGFELVEEREEGEWV  288 (295)
T ss_dssp             EEES-HH----H---H--HHHHHH-CHHHEEEEEEEEEEE-----EEG-GGHHHHHHHHHTTEEEEEEEEETTEE
T ss_pred             EECCCHH----H---H--HHHHHH-HHHhhCCCCEEEEcc-----ccH-HHHHHHHHHHHCCCEEEEEEEECCEE
Confidence            9986521    1   1  345566 688999999999853     222 22346666666655555555555553

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14968 putative methyltransferase; Provisional

Probab=99.11  E-value=2.1e-09  Score=88.98  Aligned_cols=112  Identities=21%  Similarity=0.237  Sum_probs=81.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.++||++|||+|.++..+++. + .+++++|+++++++.+++++...+  ..+.++.++..|..+.+.  .++||+|+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~-~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~d~vi   95 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-G-KKVVGVDINPYAVECAKCNAKLNN--IRNNGVEVIRSDLFEPFR--GDKFDVIL   95 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-c-ceEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEecccccccc--ccCceEEE
Confidence            45678999999999999999986 3 699999999999999999876542  122238899999876543  34899999


Q ss_pred             EcCCCCCCCCcc----------------cCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          181 GDLADPIEGGPC----------------YKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       181 ~D~~~~~~~~p~----------------~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ++++-... .+.                .......+++. +.+.|+|||.+++...
T Consensus        96 ~n~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968         96 FNPPYLPT-EEEEEWDDWLNYALSGGKDGREVIDRFLDE-VGRYLKPGGRILLLQS  149 (188)
T ss_pred             ECCCcCCC-CchhhhhhhhhhhhccCcChHHHHHHHHHH-HHHhcCCCeEEEEEEc
Confidence            98752110 000                00112467888 7899999998877653

>PHA03411 putative methyltransferase; Provisional

Probab=99.10  E-value=8.9e-10  Score=97.02  Aligned_cols=105  Identities=19%  Similarity=0.161  Sum_probs=78.1

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ...+|||+|||+|.++..++++.+..+|++||+++.+++.+++.+         ++++++.+|++++..  .++||+|++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~--~~kFDlIIs  132 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES--NEKFDVVIS  132 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc--cCCCcEEEE
Confidence            357899999999999988877643469999999999999999853         468899999998863  368999999


Q ss_pred             cCCCCCC-C--CcccCCc-----------hHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLADPIE-G--GPCYKLY-----------TKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~-~--~p~~~L~-----------t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +++-... .  .....-+           -..++.. +...|+|+|.+.+-
T Consensus       133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~-v~~~L~p~G~~~~~  182 (279)
T PHA03411        133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFAD-VGYFIVPTGSAGFA  182 (279)
T ss_pred             cCCccccCchhhhhhhhhccCccccccccHHHHHhh-hHheecCCceEEEE
Confidence            9873211 0  0000111           2467787 78999999966543

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.09  E-value=7.9e-10  Score=100.51  Aligned_cols=111  Identities=21%  Similarity=0.061  Sum_probs=83.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.++|||+|||+|+++.+++.. + .+++++|+|+.+++.+++++...+    .+.++++.+|+.+. ....+.||+|+
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~-~-~~v~g~Di~~~~~~~a~~nl~~~g----~~~i~~~~~D~~~l-~~~~~~~D~Iv  253 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLM-G-AKVIGCDIDWKMVAGARINLEHYG----IEDFFVKRGDATKL-PLSSESVDAIA  253 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHh-C-CeEEEEcCCHHHHHHHHHHHHHhC----CCCCeEEecchhcC-CcccCCCCEEE
Confidence            45678999999999999887764 3 689999999999999999886542    23488999998874 33357899999


Q ss_pred             EcCCCCCCCCcccCC---chHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKL---YTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L---~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+|-........+.   ...++++. +++.|+|||.+++..
T Consensus       254 ~dPPyg~~~~~~~~~~~~l~~~~l~~-~~r~Lk~gG~lv~~~  294 (329)
T TIGR01177       254 TDPPYGRSTTAAGDGLESLYERSLEE-FHEVLKSEGWIVYAV  294 (329)
T ss_pred             ECCCCcCcccccCCchHHHHHHHHHH-HHHHccCCcEEEEEE
Confidence            998732211111111   13678888 799999999988765

This family is found exclusively in the Archaea.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.09  E-value=3.3e-09  Score=99.75  Aligned_cols=114  Identities=21%  Similarity=0.271  Sum_probs=83.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvI  179 (257)
                      .++.+|||+|||+|+.+..+++..+..+|+++|+++..++.+++++...+     .+++++.+|+.+.... ..++||.|
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~V  317 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-----LKATVIVGDARDPAQWWDGQPFDRI  317 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEcCcccchhhcccCCCCEE
Confidence            35679999999999999998886433699999999999999999987542     2468999999764322 24679999


Q ss_pred             EEcCCCCCC----CCcccC-C-----------chHHHHHHHHcCcCCCCcEEEEecC
Q 025141          180 IGDLADPIE----GGPCYK-L-----------YTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       180 i~D~~~~~~----~~p~~~-L-----------~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ++|++-...    ..|... .           ...++++. +.+.|+|||.++..+.
T Consensus       318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~-a~~~LkpGG~lvystc  373 (427)
T PRK10901        318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA-LWPLLKPGGTLLYATC  373 (427)
T ss_pred             EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeC
Confidence            999973210    011100 0           12367888 7899999999987654

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.09  E-value=4.1e-09  Score=99.32  Aligned_cols=114  Identities=16%  Similarity=0.135  Sum_probs=84.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCce
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~f  176 (257)
                      .+..+|||+|||.|+.+..+++.. +..+|+++|+++..++.+++++...+    -.+++++.+|+.++...   ..++|
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~~f  326 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG----LKSIKILAADSRNLLELKPQWRGYF  326 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC----CCeEEEEeCChhhcccccccccccC
Confidence            345899999999999998888752 33589999999999999999987543    24699999999876431   24689


Q ss_pred             eEEEEcCCCCCC----CCcccC--C----------chHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIE----GGPCYK--L----------YTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~----~~p~~~--L----------~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |.|++|++-...    ..|...  .          ...+++.. +.+.|||||.++..+
T Consensus       327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lkpgG~lvyst  384 (434)
T PRK14901        327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLES-LAPLLKPGGTLVYAT  384 (434)
T ss_pred             CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence            999999873211    112100  0          03577888 789999999998654

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.08  E-value=6.2e-10  Score=93.06  Aligned_cols=131  Identities=14%  Similarity=0.160  Sum_probs=90.0

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.-.++|++|||.|.++..|+.+.  .+++++|+++..++.||+...-      .++|+++..|..++.  +.++||+|
T Consensus        41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~--P~~~FDLI  110 (201)
T PF05401_consen   41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFW--PEGRFDLI  110 (201)
T ss_dssp             TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----SS-EEEE
T ss_pred             ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCC--CCCCeeEE
Confidence            4555899999999999999999875  5999999999999999998752      378999999987763  46899999


Q ss_pred             EEcCCCCCCCCcccCCch----HHHHHHHHcCcCCCCcEEEEec----CCCCCCCChHHHHHHHHHHhhhCCceEEEe
Q 025141          180 IGDLADPIEGGPCYKLYT----KSFYEFVVKPRLNPEGIFVTQA----GPAGIFSHTEVFSCIYNTLRQVFKCGCCAL  249 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t----~ef~~~~~~~~L~pgGil~~~~----~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~  249 (257)
                      ++.-.-       .+|..    ..+.+. +.+.|+|||.+++-.    .+.. |.+....+.+...|.+.+-+|.-..
T Consensus       111 V~SEVl-------YYL~~~~~L~~~l~~-l~~~L~pgG~LV~g~~rd~~c~~-wgh~~ga~tv~~~~~~~~~~~~~~~  179 (201)
T PF05401_consen  111 VLSEVL-------YYLDDAEDLRAALDR-LVAALAPGGHLVFGHARDANCRR-WGHAAGAETVLEMLQEHLTEVERVE  179 (201)
T ss_dssp             EEES-G-------GGSSSHHHHHHHHHH-HHHTEEEEEEEEEEEE-HHHHHH-TT-S--HHHHHHHHHHHSEEEEEEE
T ss_pred             EEehHh-------HcCCCHHHHHHHHHH-HHHHhCCCCEEEEEEecCCcccc-cCcccchHHHHHHHHHHhhheeEEE
Confidence            987321       12222    236676 689999999998732    0111 4445567788888988887776543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.08  E-value=8.2e-10  Score=93.13  Aligned_cols=102  Identities=15%  Similarity=0.115  Sum_probs=74.1

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++.+||++|||+|..+..+++. + .+|+++|+++.+++.+++.....+     -++++...|...+  ..+++||+|++
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~-g-~~V~~iD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~--~~~~~fD~I~~  100 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLA-G-YDVRAWDHNPASIASVLDMKAREN-----LPLRTDAYDINAA--ALNEDYDFIFS  100 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHHhC-----CCceeEeccchhc--cccCCCCEEEE
Confidence            4689999999999999999985 3 589999999999999998765332     1367777776432  12367999998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ...-... .+   -...++++. +++.|+|||++++
T Consensus       101 ~~~~~~~-~~---~~~~~~l~~-~~~~LkpgG~lli  131 (195)
T TIGR00477       101 TVVFMFL-QA---GRVPEIIAN-MQAHTRPGGYNLI  131 (195)
T ss_pred             ecccccC-CH---HHHHHHHHH-HHHHhCCCcEEEE
Confidence            6542210 11   123578888 7999999997443

Part of a tellurite-reducing operon tehA and tehB

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.07  E-value=1.1e-09  Score=99.76  Aligned_cols=134  Identities=13%  Similarity=0.017  Sum_probs=91.3

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ...+|||||||+|..+..+++..+..+++++|+++.+++.|++..+       .++++++.+|+.+. ....+.||+|++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~l-p~~~~sFDvVIs  184 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDL-PFPTDYADRYVS  184 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhC-CCCCCceeEEEE
Confidence            4579999999999999888876444699999999999999998753       24688999998763 333578999998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec-CCCCCCCC---------hHHHHHHHHHHhhh-CCceEEEee
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA-GPAGIFSH---------TEVFSCIYNTLRQV-FKCGCCALF  250 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~-~~~~~~~~---------~~~~~~~~~~l~~~-F~~v~~~~~  250 (257)
                      ...-..  .+.    ....+++ +++.|+|||.+++-. ..+..+..         .....++.+.|++. |..+..-..
T Consensus       185 ~~~L~~--~~d----~~~~L~e-~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i  257 (340)
T PLN02490        185 AGSIEY--WPD----PQRGIKE-AYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRI  257 (340)
T ss_pred             cChhhh--CCC----HHHHHHH-HHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence            643221  111    2357888 799999999987632 11211100         01234566667766 776665443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.07  E-value=2e-09  Score=102.28  Aligned_cols=105  Identities=15%  Similarity=0.172  Sum_probs=79.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|+++...     ...+++++.+|+.+.. -..++||+|+
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvDiS~~~l~~A~~~~~~-----~~~~v~~~~~d~~~~~-~~~~~fD~I~  337 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFD-VHVVGIDLSVNMISFALERAIG-----RKCSVEFEVADCTKKT-YPDNSFDVIY  337 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhhc-----CCCceEEEEcCcccCC-CCCCCEEEEE
Confidence            3467999999999999998888654 5899999999999999987542     2358999999976532 2346899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-.+...      ...+++. +++.|+|||.+++..
T Consensus       338 s~~~l~h~~d------~~~~l~~-~~r~LkpgG~l~i~~  369 (475)
T PLN02336        338 SRDTILHIQD------KPALFRS-FFKWLKPGGKVLISD  369 (475)
T ss_pred             ECCcccccCC------HHHHHHH-HHHHcCCCeEEEEEE
Confidence            8643211101      2478888 799999999998753

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.07  E-value=1.5e-09  Score=93.13  Aligned_cols=107  Identities=19%  Similarity=0.146  Sum_probs=81.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+..+||+||||+|..+..+++..+ ..+++++|+++.+++.+++++....   ..++++++.+|+.+.. ...+.||+|
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~-~~~~~~D~I  125 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG---LSGNVEFVQGDAEALP-FPDNSFDAV  125 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc---cccCeEEEecccccCC-CCCCCccEE
Confidence            3457999999999999999888643 4799999999999999999875421   2467899999987643 334689999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++...-..  .+    -...+++. +.+.|+|||.+++.
T Consensus       126 ~~~~~l~~--~~----~~~~~l~~-~~~~L~~gG~li~~  157 (239)
T PRK00216        126 TIAFGLRN--VP----DIDKALRE-MYRVLKPGGRLVIL  157 (239)
T ss_pred             EEeccccc--CC----CHHHHHHH-HHHhccCCcEEEEE
Confidence            87643222  11    13577888 79999999988753

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.06  E-value=9.4e-10  Score=97.14  Aligned_cols=105  Identities=20%  Similarity=0.293  Sum_probs=84.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||||||.|+++..++++.+ .+|++|.++++..+.+++.+...+   ...+++++..|-+++    .++||.|+
T Consensus        71 ~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~g---l~~~v~v~l~d~rd~----~e~fDrIv  142 (283)
T COG2230          71 KPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAARG---LEDNVEVRLQDYRDF----EEPFDRIV  142 (283)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHcC---CCcccEEEecccccc----ccccceee
Confidence            4578999999999999999999875 699999999999999999876442   235899999996655    45699988


Q ss_pred             Ec-CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +- .+.+.  ++   -.-..||+. +++.|+|||.+++++
T Consensus       143 SvgmfEhv--g~---~~~~~ff~~-~~~~L~~~G~~llh~  176 (283)
T COG2230         143 SVGMFEHV--GK---ENYDDFFKK-VYALLKPGGRMLLHS  176 (283)
T ss_pred             ehhhHHHh--Cc---ccHHHHHHH-HHhhcCCCceEEEEE
Confidence            75 34433  22   123689999 799999999999886

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.06  E-value=1.7e-09  Score=78.91  Aligned_cols=103  Identities=23%  Similarity=0.265  Sum_probs=79.3

Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~  184 (257)
                      ++|++|||.|..+..+++. ...+++++|+++..++.+++.....    ...+++++..|..++......+||+|+++.+
T Consensus         1 ~ildig~G~G~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPEADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence            5899999999999999883 4579999999999999998532222    3468899999999886534578999999876


Q ss_pred             CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ....     .-....+++. +.+.|+|+|.+++.
T Consensus        76 ~~~~-----~~~~~~~l~~-~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHL-----VEDLARFLEE-ARRLLKPGGVLVLT  103 (107)
T ss_pred             eeeh-----hhHHHHHHHH-HHHHcCCCCEEEEE
Confidence            3210     1134577787 68899999998863

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PHA03412 putative methyltransferase; Provisional

Probab=99.06  E-value=1.1e-09  Score=94.33  Aligned_cols=103  Identities=10%  Similarity=0.095  Sum_probs=73.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+.+|||+|||+|.++..+++.   .+..+|++||||+.+++.|+++.         ++++++.+|+..+.  ..++||+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~--~~~~FDl  117 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE--FDTLFDM  117 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc--ccCCccE
Confidence            4679999999999999988764   12458999999999999999763         35789999987643  2468999


Q ss_pred             EEEcCCCCCCCCc------ccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          179 IIGDLADPIEGGP------CYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       179 Ii~D~~~~~~~~p------~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ||++||-......      ...+....+++. +.+.+++|+. ++
T Consensus       118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~-A~~Ll~~G~~-IL  160 (241)
T PHA03412        118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIER-ASQIARQGTF-II  160 (241)
T ss_pred             EEECCCCCCccccccCCcccccHHHHHHHHH-HHHHcCCCEE-Ee
Confidence            9999973211000      012445567787 5765555554 44

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.05  E-value=1.4e-09  Score=92.64  Aligned_cols=100  Identities=17%  Similarity=0.159  Sum_probs=76.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+||++|||+|..+..+++..  .+|+++|+++.+++.+++++...+    -.+++++.+|+.+.+. ..++||+|+
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~fD~I~  149 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG----LHNVSVRHGDGWKGWP-AYAPFDRIL  149 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC----CCceEEEECCcccCCC-cCCCcCEEE
Confidence            456899999999999998777653  489999999999999999887442    2469999999865432 236899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ++...+.       +     .+. +.+.|+|||++++..+
T Consensus       150 ~~~~~~~-------~-----~~~-l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        150 VTAAAPE-------I-----PRA-LLEQLKEGGILVAPVG  176 (212)
T ss_pred             EccCchh-------h-----hHH-HHHhcCCCcEEEEEEc
Confidence            9864221       1     234 5678999999998654

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.05  E-value=2e-09  Score=91.34  Aligned_cols=104  Identities=19%  Similarity=0.162  Sum_probs=80.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+||++|||.|..+..+++..+. .+++++|+++.+++.+++++.      ..++++++.+|+.+.. ...++||+|
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~------~~~~i~~~~~d~~~~~-~~~~~~D~i  110 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE------LPLNIEFIQADAEALP-FEDNSFDAV  110 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc------cCCCceEEecchhcCC-CCCCcEEEE
Confidence            46789999999999999998886443 589999999999999998875      1357899999987754 234689999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++......  .+    ....+++. +++.|+|||.+++.
T Consensus       111 ~~~~~~~~--~~----~~~~~l~~-~~~~L~~gG~l~~~  142 (223)
T TIGR01934       111 TIAFGLRN--VT----DIQKALRE-MYRVLKPGGRLVIL  142 (223)
T ss_pred             EEeeeeCC--cc----cHHHHHHH-HHHHcCCCcEEEEE
Confidence            88643221  11    13477888 79999999988864

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.05  E-value=2.4e-09  Score=88.07  Aligned_cols=101  Identities=16%  Similarity=0.228  Sum_probs=75.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ...+||+||||.|.++.++++.  ..++++||+|+.+++.+++++..      .++++++.+|+.++.. ...+||.|+.
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~-~~~~~d~vi~   83 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL-PKLQPYKVVG   83 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc-cccCCCEEEE
Confidence            4568999999999999999986  36999999999999999988742      3589999999988742 2246999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcC-cCCCCcEEEEecC
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQAG  220 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGil~~~~~  220 (257)
                      +++-.        . +.+.+..++.. .+.++|+++++..
T Consensus        84 n~Py~--------~-~~~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       84 NLPYN--------I-STPILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             CCCcc--------c-HHHHHHHHHhcCCCcceEEEEEEHH
Confidence            87532        1 22333432332 3458899998853

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.05  E-value=2.1e-09  Score=97.48  Aligned_cols=105  Identities=16%  Similarity=0.136  Sum_probs=76.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||||||+|..+..++... ..+|+++|+++.++..++..-....   .+++++++..|+.+. .. .++||+|+
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~l-p~-~~~FD~V~  194 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQL-PA-LKAFDTVF  194 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHC-CC-cCCcCEEE
Confidence            356899999999999999998864 4579999999998865443211111   246899999998664 22 57899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +-..-.....      -..+++. +++.|+|||.+++.
T Consensus       195 s~~vl~H~~d------p~~~L~~-l~~~LkpGG~lvl~  225 (322)
T PRK15068        195 SMGVLYHRRS------PLDHLKQ-LKDQLVPGGELVLE  225 (322)
T ss_pred             ECChhhccCC------HHHHHHH-HHHhcCCCcEEEEE
Confidence            8532111111      2467888 79999999999875

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.05  E-value=2.7e-09  Score=96.43  Aligned_cols=105  Identities=12%  Similarity=0.183  Sum_probs=81.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++.+|||+|||+|.++..+++. . .+|+++|+++.+++.|++++..++    -++++++.+|+.++.....++||+|++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~-~-~~V~gvD~s~~av~~A~~n~~~~~----l~~v~~~~~D~~~~~~~~~~~~D~Vv~  246 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP-G-MQLTGIEISAEAIACAKQSAAELG----LTNVQFQALDSTQFATAQGEVPDLVLV  246 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence            4689999999999999999984 3 699999999999999999987653    257999999999987644467999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      |++..   +     ...+..+. + ..++|++++.+-+++.
T Consensus       247 dPPr~---G-----~~~~~~~~-l-~~~~~~~ivyvsc~p~  277 (315)
T PRK03522        247 NPPRR---G-----IGKELCDY-L-SQMAPRFILYSSCNAQ  277 (315)
T ss_pred             CCCCC---C-----ccHHHHHH-H-HHcCCCeEEEEECCcc
Confidence            98732   1     12344444 3 3478888888877654

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.04  E-value=4.2e-09  Score=90.80  Aligned_cols=112  Identities=19%  Similarity=0.203  Sum_probs=94.7

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CCceeEEE
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVII  180 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~~fDvIi  180 (257)
                      ..-+|+||||.|....++++..|...+.+||+...++..|.+.....+    -+++.++..||.+.+...  +++.|-|.
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~----l~Nlri~~~DA~~~l~~~~~~~sl~~I~  124 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG----LKNLRLLCGDAVEVLDYLIPDGSLDKIY  124 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC----CCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence            357999999999999999987677899999999999999988876442    249999999999999764  34899999


Q ss_pred             EcCCCCCCCCcc--cCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~--~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +.-+|||-....  ..|.+.+|++. +++.|+|||.+-+.+
T Consensus       125 i~FPDPWpKkRH~KRRl~~~~fl~~-~a~~Lk~gG~l~~aT  164 (227)
T COG0220         125 INFPDPWPKKRHHKRRLTQPEFLKL-YARKLKPGGVLHFAT  164 (227)
T ss_pred             EECCCCCCCccccccccCCHHHHHH-HHHHccCCCEEEEEe
Confidence            999999953222  47899999999 799999999998865

>PTZ00146 fibrillarin; Provisional

Probab=99.04  E-value=5.2e-09  Score=93.06  Aligned_cols=138  Identities=17%  Similarity=0.164  Sum_probs=89.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--hcCCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l--~~~~~~fD  177 (257)
                      .+..+||+||||+|.++..++..- +..+|++||+++++.+...+...      ..+++..+.+|++.-.  +...+.+|
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak------~r~NI~~I~~Da~~p~~y~~~~~~vD  204 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK------KRPNIVPIIEDARYPQKYRMLVPMVD  204 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh------hcCCCEEEECCccChhhhhcccCCCC
Confidence            345799999999999999999863 23589999999876543333221      1257889999986431  22235799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCC---ChHHHHHHHHHHhhh-CCceEEEeecCc
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS---HTEVFSCIYNTLRQV-FKCGCCALFSSY  253 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~---~~~~~~~~~~~l~~~-F~~v~~~~~~~~  253 (257)
                      +|++|...++  .      ...+... +++.|||||.+++.........   ....+.+-.+.|++. |..+.....+++
T Consensus       205 vV~~Dva~pd--q------~~il~~n-a~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py  275 (293)
T PTZ00146        205 VIFADVAQPD--Q------ARIVALN-AQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF  275 (293)
T ss_pred             EEEEeCCCcc--h------HHHHHHH-HHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc
Confidence            9999986432  1      1234445 6889999999887432111111   123344445778876 887666655443

>PRK08317 hypothetical protein; Provisional

Probab=99.03  E-value=2.6e-09  Score=91.32  Aligned_cols=106  Identities=23%  Similarity=0.238  Sum_probs=80.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+||++|||+|..+..++++. +..+++++|+++..++.+++....     ..++++++..|+...- ...++||+|
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~-~~~~~~D~v   91 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLP-FPDGSFDAV   91 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCC-CCCCCceEE
Confidence            456899999999999999988764 456999999999999999987322     2367899999976532 234789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++...-.....      ...+++. ++++|+|||.+++..
T Consensus        92 ~~~~~~~~~~~------~~~~l~~-~~~~L~~gG~l~~~~  124 (241)
T PRK08317         92 RSDRVLQHLED------PARALAE-IARVLRPGGRVVVLD  124 (241)
T ss_pred             EEechhhccCC------HHHHHHH-HHHHhcCCcEEEEEe
Confidence            98754221111      2467888 799999999888643

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.03  E-value=2.6e-09  Score=96.72  Aligned_cols=101  Identities=19%  Similarity=0.173  Sum_probs=76.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+..+||+||||+|.++..+++..+ ..+|++||+++++++.|++.+...+    ..+++++.+|+.+.... ...||+|
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~~~~~~-~~~fD~I  153 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGYYGVPE-FAPYDVI  153 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChhhcccc-cCCccEE
Confidence            3557999999999999999888643 2479999999999999999876542    35799999998876543 2579999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +++...+.            .... +.+.|+|||.+++..
T Consensus       154 i~~~g~~~------------ip~~-~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        154 FVTVGVDE------------VPET-WFTQLKEGGRVIVPI  180 (322)
T ss_pred             EECCchHH------------hHHH-HHHhcCCCCEEEEEe
Confidence            99854211            1123 356899999988754

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.03  E-value=1.3e-09  Score=97.16  Aligned_cols=103  Identities=16%  Similarity=0.186  Sum_probs=77.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|..+..+++. + .+|+++|+++.+++.+++.....+     .++++...|....-  .+++||+|+
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~-g-~~V~avD~s~~ai~~~~~~~~~~~-----l~v~~~~~D~~~~~--~~~~fD~I~  189 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALL-G-FDVTAVDINQQSLENLQEIAEKEN-----LNIRTGLYDINSAS--IQEEYDFIL  189 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHcC-----CceEEEEechhccc--ccCCccEEE
Confidence            35679999999999999999885 3 599999999999999998876432     26888888876532  257899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +...-... .+   -....+++. +++.|+|||++++
T Consensus       190 ~~~vl~~l-~~---~~~~~~l~~-~~~~LkpgG~~l~  221 (287)
T PRK12335        190 STVVLMFL-NR---ERIPAIIKN-MQEHTNPGGYNLI  221 (287)
T ss_pred             EcchhhhC-CH---HHHHHHHHH-HHHhcCCCcEEEE
Confidence            87542210 11   113478888 7999999998554

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.01  E-value=3.4e-09  Score=91.45  Aligned_cols=108  Identities=22%  Similarity=0.229  Sum_probs=82.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCC------cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTV------EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~------~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~  174 (257)
                      .+..++||++||+|-++..++++-+.      .+|+++||+|.+++.+++.... .....++++.++.+||.+. .-.+.
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~L-pFdd~  176 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAEDL-PFDDD  176 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCcccC-CCCCC
Confidence            45689999999999999999997554      7999999999999999998732 1123567899999998774 45678


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      .||...+.----+-..      -...+++ ++|+|||||++..
T Consensus       177 s~D~yTiafGIRN~th------~~k~l~E-AYRVLKpGGrf~c  212 (296)
T KOG1540|consen  177 SFDAYTIAFGIRNVTH------IQKALRE-AYRVLKPGGRFSC  212 (296)
T ss_pred             cceeEEEecceecCCC------HHHHHHH-HHHhcCCCcEEEE
Confidence            8998877543111001      2356788 7999999998874

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.01  E-value=2.9e-10  Score=98.39  Aligned_cols=101  Identities=19%  Similarity=0.339  Sum_probs=74.6

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCC---CeEEEEcchHHHHhcCCCceeEE
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP---RLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~---rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++|||+|||+|.++..|++..  ++|+++|+.++++++|+++.... ..++.+   |+++.+.|+..    ..++||.|
T Consensus        90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E~----~~~~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVEG----LTGKFDAV  162 (282)
T ss_pred             CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchhh----ccccccee
Confidence            4789999999999999999964  69999999999999999994322 112222   56667777544    34669998


Q ss_pred             EEcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++--. .+.. .|      .+|.+. +.+.|+|+|.+++-
T Consensus       163 vcsevleHV~-dp------~~~l~~-l~~~lkP~G~lfit  194 (282)
T KOG1270|consen  163 VCSEVLEHVK-DP------QEFLNC-LSALLKPNGRLFIT  194 (282)
T ss_pred             eeHHHHHHHh-CH------HHHHHH-HHHHhCCCCceEee
Confidence            87532 2221 22      588887 79999999998874

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.00  E-value=9e-09  Score=96.79  Aligned_cols=136  Identities=20%  Similarity=0.155  Sum_probs=89.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvI  179 (257)
                      .++.+|||+|||.|+.+..+++..+..+|+++|+++..++.+++++...+  .. -++.++.+|+..... ...++||.|
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~~-~~v~~~~~d~~~~~~~~~~~~fD~V  313 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--LT-IKAETKDGDGRGPSQWAENEQFDRI  313 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeccccccccccccccccCEE
Confidence            34589999999999999998886445699999999999999999987543  11 234446677654321 124679999


Q ss_pred             EEcCCCCCC----CCccc--CC----------chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q 025141          180 IGDLADPIE----GGPCY--KL----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (257)
Q Consensus       180 i~D~~~~~~----~~p~~--~L----------~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~  243 (257)
                      ++|++-...    ..|..  ..          ...+++.. +.+.|||||.++..+.+-   . ++.....++.+-+.+|
T Consensus       314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~-a~~~LkpgG~lvystcs~---~-~~Ene~~v~~~l~~~~  388 (426)
T TIGR00563       314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA-IWPLLKTGGTLVYATCSV---L-PEENSEQIKAFLQEHP  388 (426)
T ss_pred             EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC---C-hhhCHHHHHHHHHhCC
Confidence            999873211    01210  00          12578888 789999999999765432   2 2333344444444444


Q ss_pred             c
Q 025141          244 C  244 (257)
Q Consensus       244 ~  244 (257)
                      .
T Consensus       389 ~  389 (426)
T TIGR00563       389 D  389 (426)
T ss_pred             C
Confidence            3

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.00  E-value=4.9e-09  Score=96.98  Aligned_cols=103  Identities=10%  Similarity=0.151  Sum_probs=81.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      .+++|||+|||+|.++..++.. . .+|++||+|+..++.|++++..++    -++++++.+|+.+++....++||+|++
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~-~-~~v~~vE~~~~av~~a~~N~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~vi~  306 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP-D-TQLTGIEIESEAIACAQQSAQMLG----LDNLSFAALDSAKFATAQMSAPELVLV  306 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc-C-CeEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence            4578999999999999999874 3 689999999999999999987653    248999999999988543356999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      |||..   +     ...++++. +. .++|++++.+.+.
T Consensus       307 DPPr~---G-----~~~~~l~~-l~-~~~p~~ivyvsc~  335 (374)
T TIGR02085       307 NPPRR---G-----IGKELCDY-LS-QMAPKFILYSSCN  335 (374)
T ss_pred             CCCCC---C-----CcHHHHHH-HH-hcCCCeEEEEEeC
Confidence            98742   2     13566666 43 5899999988764

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.00  E-value=7e-09  Score=97.99  Aligned_cols=103  Identities=16%  Similarity=0.204  Sum_probs=80.4

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fDv  178 (257)
                      +..+|||+|||+|.++..+++..  .+|+++|+++.+++.|++++..++    -.+++++.+|+.+++..   ..++||+
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~fD~  370 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG----LDNVTFYHANLEEDFTDQPWALGGFDK  370 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEeChHHhhhhhhhhcCCCCE
Confidence            45799999999999999998863  699999999999999999987553    24699999999987643   2357999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      |++|++-.   +.      .+.++. +. .|+|++++.+.+++
T Consensus       371 Vi~dPPr~---g~------~~~~~~-l~-~~~~~~ivyvSCnp  402 (443)
T PRK13168        371 VLLDPPRA---GA------AEVMQA-LA-KLGPKRIVYVSCNP  402 (443)
T ss_pred             EEECcCCc---Ch------HHHHHH-HH-hcCCCeEEEEEeCh
Confidence            99998742   11      244555 44 37999998887654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.00  E-value=2.4e-09  Score=99.29  Aligned_cols=101  Identities=23%  Similarity=0.373  Sum_probs=77.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||.|.++..++++.+ .+|+++|+++++++.|++...       ...+++...|.++.    .++||.|+
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~-------~l~v~~~~~D~~~l----~~~fD~Iv  233 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCA-------GLPVEIRLQDYRDL----NGQFDRIV  233 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhc-------cCeEEEEECchhhc----CCCCCEEE
Confidence            4567999999999999999998654 599999999999999998763       12478888997653    46899998


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +... ...  +.   -.-..+++. ++++|||||.++++.
T Consensus       234 s~~~~ehv--g~---~~~~~~l~~-i~r~LkpGG~lvl~~  267 (383)
T PRK11705        234 SVGMFEHV--GP---KNYRTYFEV-VRRCLKPDGLFLLHT  267 (383)
T ss_pred             EeCchhhC--Ch---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            7542 211  11   112478898 799999999998864

>PRK06922 hypothetical protein; Provisional

Probab=98.99  E-value=2.9e-09  Score=103.35  Aligned_cols=112  Identities=20%  Similarity=0.091  Sum_probs=81.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvIi  180 (257)
                      ++.+|||||||+|..+..+++..+..+++++|+++.+++.|++.....     ..+++++.+|+.+.-. -.+++||+|+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV  492 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV  492 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence            468999999999999988887555679999999999999999875432     2478889999887421 2347899999


Q ss_pred             EcCCCCCC--CCc-cc----CCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIE--GGP-CY----KLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~--~~p-~~----~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-++.  ..| ..    .-....+++. +.++|||||.+++..
T Consensus       493 sn~vLH~L~syIp~~g~~f~~edl~kiLre-I~RVLKPGGrLII~D  537 (677)
T PRK06922        493 YSSILHELFSYIEYEGKKFNHEVIKKGLQS-AYEVLKPGGRIIIRD  537 (677)
T ss_pred             EchHHHhhhhhcccccccccHHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence            87532210  001 00    0123578888 799999999999864

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.99  E-value=3.5e-09  Score=98.09  Aligned_cols=100  Identities=23%  Similarity=0.284  Sum_probs=81.9

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~  183 (257)
                      .+|||++||+|..+..+++..+..+|+++|+|+..++.+++++..++    -.+++++.+|+..++.. .++||+|++|+
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~----~~~~~v~~~Da~~~l~~-~~~fD~V~lDP  133 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG----LENEKVFNKDANALLHE-ERKFDVVDIDP  133 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEhhhHHHHHhh-cCCCCEEEECC
Confidence            58999999999999998875555699999999999999999998774    24577999999998864 56799999998


Q ss_pred             CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |.    .+      .+|+.. +.+.++++|++.+-.
T Consensus       134 ~G----s~------~~~l~~-al~~~~~~gilyvSA  158 (382)
T PRK04338        134 FG----SP------APFLDS-AIRSVKRGGLLCVTA  158 (382)
T ss_pred             CC----Cc------HHHHHH-HHHHhcCCCEEEEEe
Confidence            72    22      356666 567789999998753

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.98  E-value=3.5e-09  Score=95.21  Aligned_cols=105  Identities=11%  Similarity=0.118  Sum_probs=78.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +..+|||||||+|.++..++++.+..+++++|+ |.+++.++++....+   ..+|++++.+|+++.   .-+.+|+|++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g---l~~rv~~~~~d~~~~---~~~~~D~v~~  221 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE---SYPEADAVLF  221 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC---ccceEEEEecCccCC---CCCCCCEEEe
Confidence            457999999999999999998765679999998 899999999876432   346899999998652   1234799876


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .-.-+.. .+   -.....++. +++.|+|||.+++.
T Consensus       222 ~~~lh~~-~~---~~~~~il~~-~~~~L~pgG~l~i~  253 (306)
T TIGR02716       222 CRILYSA-NE---QLSTIMCKK-AFDAMRSGGRLLIL  253 (306)
T ss_pred             EhhhhcC-Ch---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence            5432110 11   112467888 79999999999875

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00452 methyltransferase, putative

Probab=98.96  E-value=6.4e-09  Score=93.88  Aligned_cols=105  Identities=17%  Similarity=0.105  Sum_probs=74.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||||||+|..+..++... ...|+++|+++.++..++..-....   .++++.+...|..+.- . ...||+|+
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~---~~~~v~~~~~~ie~lp-~-~~~FD~V~  193 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD---NDKRAILEPLGIEQLH-E-LYAFDTVF  193 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc---cCCCeEEEECCHHHCC-C-CCCcCEEE
Confidence            456899999999999998888763 4589999999999876433211111   2467888888865542 2 35899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-.....|      .+++++ +++.|+|||.+++.
T Consensus       194 s~gvL~H~~dp------~~~L~e-l~r~LkpGG~Lvle  224 (314)
T TIGR00452       194 SMGVLYHRKSP------LEHLKQ-LKHQLVIKGELVLE  224 (314)
T ss_pred             EcchhhccCCH------HHHHHH-HHHhcCCCCEEEEE
Confidence            87532111122      478898 79999999999875

Known examples to date are restricted to the proteobacteria.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.95  E-value=6.8e-09  Score=88.66  Aligned_cols=105  Identities=19%  Similarity=0.172  Sum_probs=80.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      .+.+||++|||+|.++..+++..  .+++++|+++.+++.+++++....    ..++++...|+.++.....++||+|++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~i~~  118 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKGAKSFDVVTC  118 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCCCCCccEEEe
Confidence            47899999999999999888753  479999999999999999876432    126889999998886554578999998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ...-.....      ...+++. +++.|+|||.+++..
T Consensus       119 ~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~i~~  149 (224)
T TIGR01983       119 MEVLEHVPD------PQAFIRA-CAQLLKPGGILFFST  149 (224)
T ss_pred             hhHHHhCCC------HHHHHHH-HHHhcCCCcEEEEEe
Confidence            643211111      2467888 799999999887643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.95  E-value=6.2e-09  Score=89.66  Aligned_cols=104  Identities=16%  Similarity=0.165  Sum_probs=80.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +..+||+||||+|.++..+.+. . .+++++|+++..++.+++++....     .+++++..|..++.....++||+|++
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~fD~Ii~  120 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL-G-ADVTGIDASEENIEVARLHALESG-----LKIDYRQTTAEELAAEHPGQFDVVTC  120 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-C-CeEEEEcCCHHHHHHHHHHHHHcC-----CceEEEecCHHHhhhhcCCCccEEEE
Confidence            4679999999999999988885 3 589999999999999998876432     36788889988876555578999998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ...-.....      ..++++. +.+.|+|||.+++..
T Consensus       121 ~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~v~~  151 (233)
T PRK05134        121 MEMLEHVPD------PASFVRA-CAKLVKPGGLVFFST  151 (233)
T ss_pred             hhHhhccCC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence            643211111      2467888 799999999988754

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.94  E-value=1.9e-08  Score=94.59  Aligned_cols=102  Identities=18%  Similarity=0.202  Sum_probs=80.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~fDv  178 (257)
                      +..+|||+|||+|.++..+++.  ..+|++||+++.+++.|++++..++    -.+++++.+|+.+++...   ...||+
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~~~~~D~  365 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWAGQIPDV  365 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhcCCCCCE
Confidence            4579999999999999999885  3689999999999999999987653    358999999999877532   357999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |++|++..   +     ...++++. +. .|+|++++.+.+
T Consensus       366 vi~dPPr~---G-----~~~~~l~~-l~-~l~~~~ivyvsc  396 (431)
T TIGR00479       366 LLLDPPRK---G-----CAAEVLRT-II-ELKPERIVYVSC  396 (431)
T ss_pred             EEECcCCC---C-----CCHHHHHH-HH-hcCCCEEEEEcC
Confidence            99998742   1     13566776 44 489999877654

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=9.9e-09  Score=85.10  Aligned_cols=102  Identities=18%  Similarity=0.191  Sum_probs=76.6

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .-+.+.|+|+|||+|.++..++.. +..+|++||+||+.+++++++.+..     ..++.+++.|..++    ..++|.+
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~----~~~~dtv  112 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF----RGKFDTV  112 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc----CCccceE
Confidence            345788999999999999988876 4589999999999999999997642     35899999997765    5789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++|||-+..   ..+ ..++|+.. +.+.-  +.++.++
T Consensus       113 imNPPFG~~---~rh-aDr~Fl~~-Ale~s--~vVYsiH  144 (198)
T COG2263         113 IMNPPFGSQ---RRH-ADRPFLLK-ALEIS--DVVYSIH  144 (198)
T ss_pred             EECCCCccc---ccc-CCHHHHHH-HHHhh--heEEEee
Confidence            999974331   112 46677776 33322  4455553

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.93  E-value=1.2e-08  Score=90.25  Aligned_cols=94  Identities=19%  Similarity=0.306  Sum_probs=71.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCC---CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKT---VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~---~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ...+|||+|||+|..+..+++..+   ..+++++|+++.+++.|++..         +++++.++|+.+. .-.++.||+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~l-p~~~~sfD~  154 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL-PFADQSLDA  154 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccC-CCcCCceeE
Confidence            457899999999999998876422   137999999999999998752         4678899997653 233578999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+....      |       .++++ ++++|+|||.+++-.
T Consensus       155 I~~~~~------~-------~~~~e-~~rvLkpgG~li~~~  181 (272)
T PRK11088        155 IIRIYA------P-------CKAEE-LARVVKPGGIVITVT  181 (272)
T ss_pred             EEEecC------C-------CCHHH-HHhhccCCCEEEEEe
Confidence            986421      2       12356 688999999998754

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.93  E-value=8.5e-09  Score=87.64  Aligned_cols=133  Identities=14%  Similarity=0.112  Sum_probs=84.9

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+++.+||+||||+|..+..+.+..+..++++||+++++++.|++++         ++++++.+|+.+.  ...++||+|
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---------~~~~~~~~d~~~~--~~~~sfD~V  109 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---------PNINIIQGSLFDP--FKDNFFDLV  109 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---------CCCcEEEeeccCC--CCCCCEEEE
Confidence            35678999999999999999988634469999999999999999853         3567888887762  345789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCC------CChH-HHHHHHHHHhhhCCceEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF------SHTE-VFSCIYNTLRQVFKCGCCAL  249 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~------~~~~-~~~~~~~~l~~~F~~v~~~~  249 (257)
                      ++...-... .| .  .-..++++ +.++++ +-+++.....|...      .... ..++..+.+.+.||..+.-.
T Consensus       110 ~~~~vL~hl-~p-~--~~~~~l~e-l~r~~~-~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~~l~~~~  180 (204)
T TIGR03587       110 LTKGVLIHI-NP-D--NLPTAYRE-LYRCSN-RYILIAEYYNPSPVEISYRGNSGRLWKRDFAGEMMDRYPDLKLVD  180 (204)
T ss_pred             EECChhhhC-CH-H--HHHHHHHH-HHhhcC-cEEEEEEeeCCCceeeeeeCCcchhhhhhHHHHHHHhCCcceeee
Confidence            987642110 12 1  12467777 677763 23333332222100      0111 12344566666788765544

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.93  E-value=8.7e-09  Score=95.09  Aligned_cols=101  Identities=23%  Similarity=0.214  Sum_probs=85.5

Q ss_pred             CeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          104 KTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      .+|||+.+|+|..+.++++. ++..+|+++|+||..++.++++...++    ..+++++.+|+..++....++||+|++|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~~~~fDvIdlD  121 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYRNRKFHVIDID  121 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence            58999999999999999886 356899999999999999999998763    3478999999999998766789999999


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++.    .|      .+|+.. +.+.++++|++.+-+
T Consensus       122 PfG----s~------~~fld~-al~~~~~~glL~vTa  147 (374)
T TIGR00308       122 PFG----TP------APFVDS-AIQASAERGLLLVTA  147 (374)
T ss_pred             CCC----Cc------HHHHHH-HHHhcccCCEEEEEe
Confidence            863    22      267787 678899999988763

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK05785 hypothetical protein; Provisional

Probab=98.91  E-value=2.4e-08  Score=86.22  Aligned_cols=100  Identities=16%  Similarity=0.146  Sum_probs=71.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+|||||||+|.++..+.+.. ..+|+++|+++++++.|++..            ..+.+|+.+. .-.+++||+|+
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~l-p~~d~sfD~v~  115 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------------DKVVGSFEAL-PFRDKSFDVVM  115 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------------ceEEechhhC-CCCCCCEEEEE
Confidence            347899999999999999998864 358999999999999998631            2456787653 44568899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      +...-.+...      ....+++ ++++|+|.. .++..+.|
T Consensus       116 ~~~~l~~~~d------~~~~l~e-~~RvLkp~~-~ile~~~p  149 (226)
T PRK05785        116 SSFALHASDN------IEKVIAE-FTRVSRKQV-GFIAMGKP  149 (226)
T ss_pred             ecChhhccCC------HHHHHHH-HHHHhcCce-EEEEeCCC
Confidence            8654222111      2467888 799999953 23344333

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.91  E-value=9.2e-09  Score=88.16  Aligned_cols=112  Identities=17%  Similarity=0.234  Sum_probs=78.4

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC------------------------------
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE------------------------------  151 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~------------------------------  151 (257)
                      .++.+|||||-.|.++..++++.+...|.+||||+..|+.|+++.+....                              
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            47899999999999999999988878999999999999999998754310                              


Q ss_pred             --------CCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccC-CchHHHHHHHHcCcCCCCcEEEEe
Q 025141          152 --------AFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYK-LYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       152 --------~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~-L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                              .+...|..+-..   ++|.....+||+|++=.-.-|. -..++ -=-..||+. +.+.|.|||++++.
T Consensus       138 t~~~p~n~~f~~~n~vle~~---dfl~~~~~~fDiIlcLSiTkWI-HLNwgD~GL~~ff~k-is~ll~pgGiLvvE  208 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESD---DFLDMIQPEFDIILCLSITKWI-HLNWGDDGLRRFFRK-ISSLLHPGGILVVE  208 (288)
T ss_pred             cccCCcchhcccccEEEecc---hhhhhccccccEEEEEEeeeeE-ecccccHHHHHHHHH-HHHhhCcCcEEEEc
Confidence                    001112222222   2444456789999976543221 00000 013689999 79999999999985

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.89  E-value=8.5e-09  Score=88.24  Aligned_cols=110  Identities=13%  Similarity=0.070  Sum_probs=75.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--------CCCCCCCeEEEEcchHHHHhcC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--------~~~~~~rv~i~~~Da~~~l~~~  172 (257)
                      +++.+||++|||.|..+..++.+ + -+|++||+++..++.+.+......        ......+++++++|..++-...
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~-G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ-G-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            45579999999999999999986 3 589999999999998644222110        0012457999999988764322


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      .++||.|+--..-.. ..|   -....+++. +.+.|+|||.+++
T Consensus       111 ~~~fD~i~D~~~~~~-l~~---~~R~~~~~~-l~~lLkpgG~~ll  150 (213)
T TIGR03840       111 LGPVDAVYDRAALIA-LPE---EMRQRYAAH-LLALLPPGARQLL  150 (213)
T ss_pred             CCCcCEEEechhhcc-CCH---HHHHHHHHH-HHHHcCCCCeEEE
Confidence            467998875433111 011   123457888 7999999996443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.89  E-value=7.7e-09  Score=98.36  Aligned_cols=104  Identities=17%  Similarity=0.193  Sum_probs=77.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-l~~~~~~fDvIi  180 (257)
                      +.++||+||||+|..+..+++..  .+|+++|+++.+++.+++...      ..++++++.+|+... +....++||+|+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~------~~~~i~~~~~d~~~~~~~~~~~~fD~I~  108 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESING------HYKNVKFMCADVTSPDLNISDGSVDLIF  108 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhc------cCCceEEEEecccccccCCCCCCEEEEe
Confidence            45789999999999999999863  589999999999998776322      236889999998642 223357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-...  +  .--..++++. +++.|+|||++++.
T Consensus       109 ~~~~l~~l--~--~~~~~~~l~~-~~r~Lk~gG~l~~~  141 (475)
T PLN02336        109 SNWLLMYL--S--DKEVENLAER-MVKWLKVGGYIFFR  141 (475)
T ss_pred             hhhhHHhC--C--HHHHHHHHHH-HHHhcCCCeEEEEE
Confidence            98642210  1  0012578888 79999999999875

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.89  E-value=2.6e-08  Score=84.89  Aligned_cols=105  Identities=20%  Similarity=0.282  Sum_probs=85.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----CCC
Q 025141          101 PNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-----~~~  174 (257)
                      -.+|++|+||.=+|..+...+. .|+..+|+++|+|++..+++.+.....+   -+.+++++++++.+-|.+     ..+
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag---v~~KI~~i~g~a~esLd~l~~~~~~~  148 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG---VDHKITFIEGPALESLDELLADGESG  148 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc---ccceeeeeecchhhhHHHHHhcCCCC
Confidence            4789999999999998765554 5777899999999999999988776554   568999999999988764     247


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +||++|+|+.-.        .|. .++++ +-+.|++||++++.
T Consensus       149 tfDfaFvDadK~--------nY~-~y~e~-~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  149 TFDFAFVDADKD--------NYS-NYYER-LLRLLRVGGVIVVD  182 (237)
T ss_pred             ceeEEEEccchH--------HHH-HHHHH-HHhhcccccEEEEe
Confidence            899999997521        233 77888 58899999999874

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.88  E-value=4.3e-08  Score=90.33  Aligned_cols=100  Identities=14%  Similarity=0.207  Sum_probs=77.7

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC----------
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----------  172 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~----------  172 (257)
                      +.+|||++||+|.++..+++.  ..+|++||+++.+++.++++...++    -.+++++.+|+.++++..          
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~~~~~  280 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSAEEFTQAMNGVREFNRLK  280 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcccccccc
Confidence            357999999999999988875  3699999999999999999987663    248999999999987542          


Q ss_pred             -----CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          173 -----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       173 -----~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                           ..+||+|++|||..   +     ...+.++. +.   +|++++.+.++
T Consensus       281 ~~~~~~~~~D~v~lDPPR~---G-----~~~~~l~~-l~---~~~~ivyvSC~  321 (362)
T PRK05031        281 GIDLKSYNFSTIFVDPPRA---G-----LDDETLKL-VQ---AYERILYISCN  321 (362)
T ss_pred             cccccCCCCCEEEECCCCC---C-----CcHHHHHH-HH---ccCCEEEEEeC
Confidence                 12599999999842   2     13455565 33   37888888764

>TIGR03438 probable methyltransferase

Probab=98.88  E-value=2.2e-08  Score=90.01  Aligned_cols=112  Identities=14%  Similarity=0.111  Sum_probs=76.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC----c
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE----S  175 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~----~  175 (257)
                      +++.+||++|||+|..++.+++... ..++++||+++++++.+++.+....   ..-+++.+.+|..+.+.-...    .
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~---p~~~v~~i~gD~~~~~~~~~~~~~~~  138 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY---PQLEVHGICADFTQPLALPPEPAAGR  138 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC---CCceEEEEEEcccchhhhhcccccCC
Confidence            4567899999999999999988632 3689999999999999998765321   123466789998765432211    2


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ..+++++..-.+. .+   -....+++. +++.|+|||.+++-..
T Consensus       139 ~~~~~~gs~~~~~-~~---~e~~~~L~~-i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       139 RLGFFPGSTIGNF-TP---EEAVAFLRR-IRQLLGPGGGLLIGVD  178 (301)
T ss_pred             eEEEEecccccCC-CH---HHHHHHHHH-HHHhcCCCCEEEEecc
Confidence            3345555432221 11   113578998 7999999999997543

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.87  E-value=9.6e-09  Score=86.20  Aligned_cols=105  Identities=19%  Similarity=0.244  Sum_probs=80.4

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeE-EEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-LVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~-i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ..-+||++|||+|..-...-- .+..+||.+|.++.+-+.+.+.+.-.    ..+++. ++++|+++..+-.+.+||.|+
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~l~d~s~DtVV  150 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQLADGSYDTVV  150 (252)
T ss_pred             CccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcccccCCeeeEE
Confidence            345789999999998766432 25689999999999999999987644    346776 999999987656778999999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ...--      +..--..+.+++ ++++|+|||++++.
T Consensus       151 ~TlvL------CSve~~~k~L~e-~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  151 CTLVL------CSVEDPVKQLNE-VRRLLRPGGRIIFI  181 (252)
T ss_pred             EEEEE------eccCCHHHHHHH-HHHhcCCCcEEEEE
Confidence            87541      111113567888 79999999988864

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.87  E-value=1.7e-07  Score=86.05  Aligned_cols=100  Identities=14%  Similarity=0.173  Sum_probs=77.6

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---------C
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------K  173 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---------~  173 (257)
                      +.+|||+|||+|.++..+++..  .+|++||+++++++.|++++..++    -.+++++.+|+.+++...         .
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~~~~  271 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSAEEFTQAMNGVREFRRLK  271 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCHHHHHHHHhhcccccccc
Confidence            4579999999999999888753  599999999999999999987663    247999999999988641         1


Q ss_pred             ------CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          174 ------ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       174 ------~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                            .+||+|++|||..   +.     ..++++. +.   +|++++.+.+.
T Consensus       272 ~~~~~~~~~d~v~lDPPR~---G~-----~~~~l~~-l~---~~~~ivYvsC~  312 (353)
T TIGR02143       272 GIDLKSYNCSTIFVDPPRA---GL-----DPDTCKL-VQ---AYERILYISCN  312 (353)
T ss_pred             ccccccCCCCEEEECCCCC---CC-----cHHHHHH-HH---cCCcEEEEEcC
Confidence                  2489999999842   21     3455565 33   47898888764

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.86  E-value=2.6e-08  Score=85.13  Aligned_cols=102  Identities=17%  Similarity=0.189  Sum_probs=74.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.++|||||||+|.++..+++. . .+|+++|+++++++.|++.+....   ...++++..+|+.+.    .++||+|+
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~-~-~~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~----~~~fD~ii  124 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR-G-AIVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSL----CGEFDIVV  124 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhC----CCCcCEEE
Confidence            35789999999999999999885 3 589999999999999999876432   224799999997653    27899998


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +-.. ...   +...  ...+++. +.+.+++++++.+
T Consensus       125 ~~~~l~~~---~~~~--~~~~l~~-i~~~~~~~~~i~~  156 (219)
T TIGR02021       125 CMDVLIHY---PASD--MAKALGH-LASLTKERVIFTF  156 (219)
T ss_pred             EhhHHHhC---CHHH--HHHHHHH-HHHHhCCCEEEEE
Confidence            7432 211   1111  2356777 6777887766654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.85  E-value=4.9e-09  Score=88.73  Aligned_cols=100  Identities=25%  Similarity=0.401  Sum_probs=74.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+...|||+.||-|.++..++++...++|.++|++|..++..+++..+++   -..++.++.+|+++++.  ...+|.|+
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk---v~~~i~~~~~D~~~~~~--~~~~drvi  174 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK---VENRIEVINGDAREFLP--EGKFDRVI  174 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT----TTTEEEEES-GGG-----TT-EEEEE
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC---CCCeEEEEcCCHHHhcC--ccccCEEE
Confidence            46789999999999999999997666899999999999999999998875   34689999999999987  68899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      ++.+..          +.+|+.. +.+.++++|++-
T Consensus       175 m~lp~~----------~~~fl~~-~~~~~~~~g~ih  199 (200)
T PF02475_consen  175 MNLPES----------SLEFLDA-ALSLLKEGGIIH  199 (200)
T ss_dssp             E--TSS----------GGGGHHH-HHHHEEEEEEEE
T ss_pred             ECChHH----------HHHHHHH-HHHHhcCCcEEE
Confidence            997631          2367777 678899999864

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.83  E-value=1e-08  Score=82.40  Aligned_cols=96  Identities=23%  Similarity=0.248  Sum_probs=67.8

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.++||+||||.|.++..+.+. + .+++++|+++.+++.  .+            +.....+... ....+++||+|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~-~~~~~~~fD~i   82 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKR-G-FEVTGVDISPQMIEK--RN------------VVFDNFDAQD-PPFPDGSFDLI   82 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHT-T-SEEEEEESSHHHHHH--TT------------SEEEEEECHT-HHCHSSSEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHh-C-CEEEEEECCHHHHhh--hh------------hhhhhhhhhh-hhccccchhhH
Confidence            367789999999999999999775 3 399999999999988  11            1111111111 12245799999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++...-..  -+    --..+++. ++++|||||++++..
T Consensus        83 ~~~~~l~~--~~----d~~~~l~~-l~~~LkpgG~l~~~~  115 (161)
T PF13489_consen   83 ICNDVLEH--LP----DPEEFLKE-LSRLLKPGGYLVISD  115 (161)
T ss_dssp             EEESSGGG--SS----HHHHHHHH-HHHCEEEEEEEEEEE
T ss_pred             hhHHHHhh--cc----cHHHHHHH-HHHhcCCCCEEEEEE
Confidence            98754221  11    13578888 799999999998865

...

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.81  E-value=2.1e-08  Score=84.28  Aligned_cols=104  Identities=18%  Similarity=0.168  Sum_probs=73.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.++||||||.|..+..+++. + -.|+++|+++..++.+++.....     .-.++....|..++-  .+++||+|+
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~-G-~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~--~~~~yD~I~   99 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQ-G-FDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFD--FPEEYDFIV   99 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHT-T--EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS---TTTEEEEE
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhcc--ccCCcCEEE
Confidence            46789999999999999999996 4 48999999999999988765433     124888888865542  347899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-..- .+  . .-...++. +++.++|||++++.
T Consensus       100 st~v~~fL-~~--~-~~~~i~~~-m~~~~~pGG~~li~  132 (192)
T PF03848_consen  100 STVVFMFL-QR--E-LRPQIIEN-MKAATKPGGYNLIV  132 (192)
T ss_dssp             EESSGGGS--G--G-GHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             EEEEeccC-CH--H-HHHHHHHH-HHhhcCCcEEEEEE
Confidence            76432110 11  1 23567888 79999999988764

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.80  E-value=8.7e-08  Score=83.62  Aligned_cols=144  Identities=16%  Similarity=0.177  Sum_probs=93.4

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE----EcchHHHHhcCCCc
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV----INDARAELESRKES  175 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~----~~Da~~~l~~~~~~  175 (257)
                      +.++..+|++|||+|+++..+++.-+..+|++||.++..+.+|.++.....   ...++.++    ..|...-.....++
T Consensus       146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~l~~~~  222 (328)
T KOG2904|consen  146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHPLLEGK  222 (328)
T ss_pred             hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEecccccccccccccccCc
Confidence            445668999999999999999886456899999999999999999976432   24577777    44544433334589


Q ss_pred             eeEEEEcCCC-C---CC--------CCcccCCc--------hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025141          176 YDVIIGDLAD-P---IE--------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (257)
Q Consensus       176 fDvIi~D~~~-~---~~--------~~p~~~L~--------t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~  235 (257)
                      +|+|+++++- .   ..        ..|...|.        -.-++.. +.++|+|||.+.++.+.-  -.++.....++
T Consensus       223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~-a~R~Lq~gg~~~le~~~~--~~~~~lv~~~m  299 (328)
T KOG2904|consen  223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLL-ATRMLQPGGFEQLELVER--KEHSYLVRIWM  299 (328)
T ss_pred             eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHh-hHhhcccCCeEEEEeccc--ccCcHHHHHHH
Confidence            9999999972 1   10        11211111        1245555 589999999999987532  12334444444


Q ss_pred             HHHhh-hCCceEEEe
Q 025141          236 NTLRQ-VFKCGCCAL  249 (257)
Q Consensus       236 ~~l~~-~F~~v~~~~  249 (257)
                      ..+.. .+..+.++.
T Consensus       300 ~s~~~d~~~~~~v~~  314 (328)
T KOG2904|consen  300 ISLKDDSNGKAAVVS  314 (328)
T ss_pred             Hhchhhccchhheee
Confidence            44332 355554443

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.79  E-value=2.5e-08  Score=85.65  Aligned_cols=107  Identities=11%  Similarity=0.031  Sum_probs=75.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--------CCCCCCCeEEEEcchHHHHhcC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--------~~~~~~rv~i~~~Da~~~l~~~  172 (257)
                      ++..+||++|||.|..+..++.+ + .+|++||+++..++.+.+...+..        ..+...+++++.+|..++-...
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~-G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ-G-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC-C-CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            45579999999999999999985 3 589999999999998643221110        0123578999999998874333


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcE
Q 025141          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI  214 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGi  214 (257)
                      ...||.|+--..-.. ..|   -....+++. +.+.|+|||+
T Consensus       114 ~~~fd~v~D~~~~~~-l~~---~~R~~~~~~-l~~lL~pgG~  150 (218)
T PRK13255        114 LADVDAVYDRAALIA-LPE---EMRERYVQQ-LAALLPAGCR  150 (218)
T ss_pred             CCCeeEEEehHhHhh-CCH---HHHHHHHHH-HHHHcCCCCe
Confidence            367999885432111 011   124577888 7999999985

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.78  E-value=2e-08  Score=86.04  Aligned_cols=131  Identities=18%  Similarity=0.224  Sum_probs=87.3

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ++..+.++++|||+|..++-++.|+  ++|+++|+++.++++|+++++...   .+-..++...|....+. .++..|+|
T Consensus        31 ~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y---~~t~~~ms~~~~v~L~g-~e~SVDlI  104 (261)
T KOG3010|consen   31 TEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTY---CHTPSTMSSDEMVDLLG-GEESVDLI  104 (261)
T ss_pred             CCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCccc---ccCCccccccccccccC-CCcceeee
Confidence            4444589999999998888888886  689999999999999999876431   22233444455555442 36889999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCc-EEEEecCCCCCCCChHHHHHHHHHHhhhCCc
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC  244 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG-il~~~~~~~~~~~~~~~~~~~~~~l~~~F~~  244 (257)
                      ++.-.-+|       +-..+||+. ++++|+++| +++++...-+....++...-+++...+..|.
T Consensus       105 ~~Aqa~HW-------Fdle~fy~~-~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~~p~  162 (261)
T KOG3010|consen  105 TAAQAVHW-------FDLERFYKE-AYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDSTLPY  162 (261)
T ss_pred             hhhhhHHh-------hchHHHHHH-HHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhccCch
Confidence            87644333       224689998 899999976 8888763212122344444444444444443

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.78  E-value=1e-07  Score=81.57  Aligned_cols=101  Identities=19%  Similarity=0.150  Sum_probs=70.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|.++..+++..  .+|+++|+++.+++.|++++...+   ...+++++.+|. .   ...+.||+|+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~-~---~~~~~fD~v~  132 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAG---LAGNITFEVGDL-E---SLLGRFDTVV  132 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC---CccCcEEEEcCc-h---hccCCcCEEE
Confidence            456799999999999999998863  479999999999999999876432   225889999993 2   2347799998


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      +... .+.   +..  .....++. +.+.+++++++.
T Consensus       133 ~~~~l~~~---~~~--~~~~~l~~-l~~~~~~~~~i~  163 (230)
T PRK07580        133 CLDVLIHY---PQE--DAARMLAH-LASLTRGSLIFT  163 (230)
T ss_pred             EcchhhcC---CHH--HHHHHHHH-HHhhcCCeEEEE
Confidence            7543 121   101  12355666 566665444443

>PRK06202 hypothetical protein; Provisional

Probab=98.75  E-value=4.8e-08  Score=84.26  Aligned_cols=103  Identities=16%  Similarity=0.141  Sum_probs=69.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f  176 (257)
                      .++.+|||||||+|.++..+++.    .+..+|+++|+++.+++.|++....       +++++...|+... ...+++|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~l-~~~~~~f  130 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDEL-VAEGERF  130 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEecccc-cccCCCc
Confidence            45679999999999998887753    2235899999999999999986532       3456666554332 2245789


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|++...-+.- .+   -...++++. +++.++  |.++++
T Consensus       131 D~V~~~~~lhh~-~d---~~~~~~l~~-~~r~~~--~~~~i~  165 (232)
T PRK06202        131 DVVTSNHFLHHL-DD---AEVVRLLAD-SAALAR--RLVLHN  165 (232)
T ss_pred             cEEEECCeeecC-Ch---HHHHHHHHH-HHHhcC--eeEEEe
Confidence            999998542221 11   012468888 688887  444444

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.75  E-value=3.7e-08  Score=81.17  Aligned_cols=140  Identities=19%  Similarity=0.334  Sum_probs=86.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +..+||++|||.|.++..|++..=....++||.++..+++|+......+   .+..+++...|..+- ....++||+|+-
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~---~~n~I~f~q~DI~~~-~~~~~qfdlvlD  142 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG---FSNEIRFQQLDITDP-DFLSGQFDLVLD  142 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC---CCcceeEEEeeccCC-cccccceeEEee
Confidence            3459999999999999999985322359999999999999987765443   233488888886553 223467777763


Q ss_pred             cCC-CCCC---CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEeecCccc
Q 025141          182 DLA-DPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALFSSYSF  255 (257)
Q Consensus       182 D~~-~~~~---~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~~~~~  255 (257)
                      -.+ +...   ..+..++  .-++.. +.+.|+|||++++....   |...+    +...+... |....-..++++.|
T Consensus       143 KGT~DAisLs~d~~~~r~--~~Y~d~-v~~ll~~~gifvItSCN---~T~dE----Lv~~f~~~~f~~~~tvp~ptF~F  211 (227)
T KOG1271|consen  143 KGTLDAISLSPDGPVGRL--VVYLDS-VEKLLSPGGIFVITSCN---FTKDE----LVEEFENFNFEYLSTVPTPTFMF  211 (227)
T ss_pred             cCceeeeecCCCCcccce--eeehhh-HhhccCCCcEEEEEecC---ccHHH----HHHHHhcCCeEEEEeeccceEEe
Confidence            221 1111   0222222  223455 68899999999986532   44333    33333333 54444444454444

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.74  E-value=2.7e-08  Score=87.85  Aligned_cols=111  Identities=15%  Similarity=0.195  Sum_probs=72.9

Q ss_pred             CCCeEEEEeccchH----HHHHHHhcC-----CCcEEEEEECCHHHHHHHHhhhh----hc--------------cCCC-
Q 025141          102 NPKTIFIMGGGEGS----TAREILRHK-----TVEKVVMCDIDEEVVEFCKSYLV----VN--------------KEAF-  153 (257)
Q Consensus       102 ~~~~VL~IG~G~G~----~~~~l~~~~-----~~~~v~~VEid~~vi~~a~~~~~----~~--------------~~~~-  153 (257)
                      ++.+|+++|||+|.    ++..+++..     ...+|+++|+|+.+++.|++..-    ..              ++.+ 
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    444444431     13589999999999999998531    00              0000 


Q ss_pred             ----CCCCeEEEEcchHHHHhcCCCceeEEEEcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          154 ----SDPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       154 ----~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                          -..++++...|..+.- ...++||+|++-.. ...  .+   -....+++. +++.|+|||.+++-.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf--~~---~~~~~~l~~-l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF--DE---PTQRKLLNR-FAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC--CH---HHHHHHHHH-HHHHhCCCeEEEEEC
Confidence                0137888888876532 23578999998432 111  10   113468888 799999999999853

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.72  E-value=1.3e-07  Score=85.45  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=60.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCCCCeEEEE-cchHHHHh---cCCCce
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVI-NDARAELE---SRKESY  176 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~i~~-~Da~~~l~---~~~~~f  176 (257)
                      ...++||||||+|.+...++......+++++|||+..++.|++++..+ +   -..+++++. .|......   ...++|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~---l~~~I~~~~~~~~~~i~~~i~~~~~~f  190 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG---LNGAIRLRLQKDSKAIFKGIIHKNERF  190 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC---CcCcEEEEEccchhhhhhcccccCCce
Confidence            457999999999988766665433468999999999999999998865 2   235788864 44444333   235789


Q ss_pred             eEEEEcCC
Q 025141          177 DVIIGDLA  184 (257)
Q Consensus       177 DvIi~D~~  184 (257)
                      |+|+++||
T Consensus       191 DlivcNPP  198 (321)
T PRK11727        191 DATLCNPP  198 (321)
T ss_pred             EEEEeCCC
Confidence            99999997

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.68  E-value=6.5e-07  Score=80.26  Aligned_cols=76  Identities=22%  Similarity=0.349  Sum_probs=62.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+||+||||.|.++..+++..  .+|+++|+|+++++.+++.+...+   ..++++++.+|+.+.-   ...||+|+
T Consensus        35 ~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~---~~~~d~Vv  106 (294)
T PTZ00338         35 KPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTE---FPYFDVCV  106 (294)
T ss_pred             CCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhc---ccccCEEE
Confidence            355789999999999999999853  589999999999999999876432   2468999999997742   24789999


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      .+++
T Consensus       107 aNlP  110 (294)
T PTZ00338        107 ANVP  110 (294)
T ss_pred             ecCC
Confidence            8876

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.67  E-value=5.3e-07  Score=86.57  Aligned_cols=129  Identities=15%  Similarity=0.108  Sum_probs=98.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvI  179 (257)
                      .+..-+|+||||.|..+.++++..+...+.++|+....+..+.+.....    +-.++.++.+|+..+...- +.+.|.|
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i  421 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGI  421 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEE
Confidence            3456899999999999988888656679999999999887776654332    2368889999986655443 4779999


Q ss_pred             EEcCCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025141          180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (257)
Q Consensus       180 i~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~  240 (257)
                      ++.-+|||-...  ...+.+.+|++. +++.|+|||.+-+.+.      ....+..++..+.+
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~-~~~~Lk~gG~i~~~TD------~~~y~~~~~~~~~~  477 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKI-LQDKLKDNGNLVFASD------IENYFYEAIELIQQ  477 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHH-HHHhcCCCCEEEEEcC------CHHHHHHHHHHHHh
Confidence            999999984221  347889999999 8999999999988653      24455555566554

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.67  E-value=3.3e-07  Score=82.88  Aligned_cols=103  Identities=16%  Similarity=0.106  Sum_probs=70.7

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC-CCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ++.+|||||||+|.++..+++. + .+|+++|+++.+++.+++++..... .....++++...|....    .++||+|+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~-g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv  217 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE-G-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVT  217 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEE
Confidence            4679999999999999999985 3 5899999999999999998753210 01234678888996543    47899998


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +-.. .+.   |. . ...++++. ++ .+.++|+++.
T Consensus       218 ~~~vL~H~---p~-~-~~~~ll~~-l~-~l~~g~liIs  248 (315)
T PLN02585        218 CLDVLIHY---PQ-D-KADGMIAH-LA-SLAEKRLIIS  248 (315)
T ss_pred             EcCEEEec---CH-H-HHHHHHHH-HH-hhcCCEEEEE
Confidence            6432 111   10 0 11345665 45 4667777664

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.66  E-value=1e-06  Score=83.63  Aligned_cols=135  Identities=18%  Similarity=0.176  Sum_probs=95.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+|||+++|.|+=+.+++... +...|+++|+++.-++..++++...+    -.++.+...|++.+.......||.|
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G----~~nv~v~~~D~~~~~~~~~~~fD~I  187 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG----VSNVALTHFDGRVFGAALPETFDAI  187 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCchhhhhhhchhhcCeE
Confidence            355799999999999888887753 33589999999999999999887542    3578999999988655555789999


Q ss_pred             EEcCCCCCC----CCccc-CC-----------chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q 025141          180 IGDLADPIE----GGPCY-KL-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (257)
Q Consensus       180 i~D~~~~~~----~~p~~-~L-----------~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~  243 (257)
                      ++|++-...    ..|.. .-           ..++.+.. +.+.|+|||+++-.+.+   + .++..+.+++.+-+.++
T Consensus       188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~-A~~~LkpGG~LVYSTCT---~-~~eENE~vV~~~L~~~~  262 (470)
T PRK11933        188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIES-AFHALKPGGTLVYSTCT---L-NREENQAVCLWLKETYP  262 (470)
T ss_pred             EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHH-HHHHcCCCcEEEEECCC---C-CHHHHHHHHHHHHHHCC
Confidence            999984221    11210 01           12577777 68999999999755433   3 34555566665555555


Q ss_pred             c
Q 025141          244 C  244 (257)
Q Consensus       244 ~  244 (257)
                      .
T Consensus       263 ~  263 (470)
T PRK11933        263 D  263 (470)
T ss_pred             C
Confidence            4

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.66  E-value=1.3e-07  Score=89.35  Aligned_cols=106  Identities=19%  Similarity=0.313  Sum_probs=73.6

Q ss_pred             CCeEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          103 PKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+.||++|+|+|-+...+++.    ....+|.+||.++..+...++....++  + +.+|+++.+|.+++-  .+++.|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w-~~~V~vi~~d~r~v~--lpekvDI  261 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--W-GDKVTVIHGDMREVE--LPEKVDI  261 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--T-TTTEEEEES-TTTSC--HSS-EEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--C-CCeEEEEeCcccCCC--CCCceeE
Confidence            467999999999998776653    235699999999998877766544332  3 468999999998873  3579999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |++-.....  +- .+ ...|.+.. ..+.|||+|+++-+
T Consensus       262 IVSElLGsf--g~-nE-l~pE~Lda-~~rfLkp~Gi~IP~  296 (448)
T PF05185_consen  262 IVSELLGSF--GD-NE-LSPECLDA-ADRFLKPDGIMIPS  296 (448)
T ss_dssp             EEE---BTT--BT-TT-SHHHHHHH-GGGGEEEEEEEESS
T ss_pred             EEEeccCCc--cc-cc-cCHHHHHH-HHhhcCCCCEEeCc
Confidence            999987432  21 23 35677887 78999999998843

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.65  E-value=7.9e-08  Score=78.67  Aligned_cols=76  Identities=22%  Similarity=0.261  Sum_probs=56.9

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-C-ceeEEEE
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVIIG  181 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-~-~fDvIi~  181 (257)
                      +.|+|+.||.|+.+.++++..  .+|++||+||.-++.|+.+...-+   ...|++++++|..+.++... . .||+|++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG---v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG---VADNIDFICGDFFELLKRLKSNKIFDVVFL   75 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred             CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence            368999999999999999974  589999999999999999987543   35799999999999987643 2 2899999


Q ss_pred             cCC
Q 025141          182 DLA  184 (257)
Q Consensus       182 D~~  184 (257)
                      +||
T Consensus        76 SPP   78 (163)
T PF09445_consen   76 SPP   78 (163)
T ss_dssp             ---
T ss_pred             CCC
Confidence            986

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.65  E-value=1.1e-07  Score=79.52  Aligned_cols=73  Identities=18%  Similarity=0.249  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDv  178 (257)
                      .++..+|||||||+|.+...+.+.. ..+..+||+|++-+..+.+.           .+.++.+|+-+.|.. .++.||.
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~   78 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDY   78 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccE
Confidence            3567899999999999999988865 46899999999988887753           578999999999875 5688999


Q ss_pred             EEEcCC
Q 025141          179 IIGDLA  184 (257)
Q Consensus       179 Ii~D~~  184 (257)
                      ||+.-+
T Consensus        79 VIlsqt   84 (193)
T PF07021_consen   79 VILSQT   84 (193)
T ss_pred             EehHhH
Confidence            998754

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.62  E-value=1.4e-07  Score=80.25  Aligned_cols=103  Identities=20%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ...++||+|+|-|-++..++.. -..+|+.||..+..++.|++++...    ...-.+++..-..+|.. ...+||+|.+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~-~f~~VDlVEp~~~Fl~~a~~~l~~~----~~~v~~~~~~gLQ~f~P-~~~~YDlIW~  128 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLP-VFDEVDLVEPVEKFLEQAKEYLGKD----NPRVGEFYCVGLQDFTP-EEGKYDLIWI  128 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCC-C-SEEEEEES-HHHHHHHHHHTCCG----GCCEEEEEES-GGG-----TT-EEEEEE
T ss_pred             CcceEEecccccchhHHHHHHH-hcCEeEEeccCHHHHHHHHHHhccc----CCCcceEEecCHhhccC-CCCcEeEEEe
Confidence            4579999999999999988774 3579999999999999999987642    12234666666666642 2468999999


Q ss_pred             cCCCCCCCCcccCCch---HHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t---~ef~~~~~~~~L~pgGil~~~  218 (257)
                      -..-       .+|..   .+|++. +++.|+|+|++++.
T Consensus       129 QW~l-------ghLTD~dlv~fL~R-Ck~~L~~~G~IvvK  160 (218)
T PF05891_consen  129 QWCL-------GHLTDEDLVAFLKR-CKQALKPNGVIVVK  160 (218)
T ss_dssp             ES-G-------GGS-HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             hHhh-------ccCCHHHHHHHHHH-HHHhCcCCcEEEEE
Confidence            8542       34554   479999 59999999999984

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.61  E-value=9.3e-08  Score=82.91  Aligned_cols=98  Identities=22%  Similarity=0.233  Sum_probs=74.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ...++|||||+|.|..+..+++..+..+++++|+ |.+++.+++          .+|++++.+|.+   ...+. +|+|+
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P~-~D~~~  163 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLPV-ADVYL  163 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCSS-ESEEE
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhcc-cccee
Confidence            3457899999999999999998766789999999 999999998          379999999976   34445 99998


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCC--cEEEEec
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPE--GIFVTQA  219 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pg--Gil~~~~  219 (257)
                      +--. ..+  .+   -.....++. +++.|+||  |.+++..
T Consensus       164 l~~vLh~~--~d---~~~~~iL~~-~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  164 LRHVLHDW--SD---EDCVKILRN-AAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             EESSGGGS---H---HHHHHHHHH-HHHHSEECTTEEEEEEE
T ss_pred             eehhhhhc--ch---HHHHHHHHH-HHHHhCCCCCCeEEEEe
Confidence            8654 222  11   124577888 79999998  9887753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.60  E-value=6.7e-07  Score=79.61  Aligned_cols=156  Identities=17%  Similarity=0.178  Sum_probs=95.3

Q ss_pred             EEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC
Q 025141           73 VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA  152 (257)
Q Consensus        73 ~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~  152 (257)
                      .+|-.+++.    .-+.+..-|++   .-+.++|||||||.|..+-.+++. +.+.|+++|-++...-.++---.+.+  
T Consensus        93 ~IDtEWrSd----~KW~rl~p~l~---~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg--  162 (315)
T PF08003_consen   93 HIDTEWRSD----WKWDRLLPHLP---DLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLG--  162 (315)
T ss_pred             eeccccccc----chHHHHHhhhC---CcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhC--
Confidence            345444432    23455444443   347899999999999999999986 56799999998877654332111111  


Q ss_pred             CCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC----------C
Q 025141          153 FSDPRLELVINDARAELESRKESYDVIIGDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG----------P  221 (257)
Q Consensus       153 ~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~----------~  221 (257)
                       .+.++ .....+.+.+.. .+.||+|++=.-- +- ..|      .+.+++ +++.|+|||.+++.+-          .
T Consensus       163 -~~~~~-~~lplgvE~Lp~-~~~FDtVF~MGVLYHr-r~P------l~~L~~-Lk~~L~~gGeLvLETlvi~g~~~~~L~  231 (315)
T PF08003_consen  163 -QDPPV-FELPLGVEDLPN-LGAFDTVFSMGVLYHR-RSP------LDHLKQ-LKDSLRPGGELVLETLVIDGDENTVLV  231 (315)
T ss_pred             -CCccE-EEcCcchhhccc-cCCcCEEEEeeehhcc-CCH------HHHHHH-HHHhhCCCCEEEEEEeeecCCCceEEc
Confidence             12232 333456677766 6789999985321 11 123      367778 7999999999986531          1


Q ss_pred             --------CCCCCChHHHHHHHHHHhhh-CCceEEEee
Q 025141          222 --------AGIFSHTEVFSCIYNTLRQV-FKCGCCALF  250 (257)
Q Consensus       222 --------~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~  250 (257)
                              +++|. .+....+.+-|++. |..++....
T Consensus       232 P~~rYa~m~nv~F-iPs~~~L~~wl~r~gF~~v~~v~~  268 (315)
T PF08003_consen  232 PEDRYAKMRNVWF-IPSVAALKNWLERAGFKDVRCVDV  268 (315)
T ss_pred             cCCcccCCCceEE-eCCHHHHHHHHHHcCCceEEEecC
Confidence                    11111 12345566666554 888776654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=7.3e-07  Score=83.81  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=86.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC--CceeEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--ESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~--~~fDvI  179 (257)
                      ..+++||+=||.|.++..+++.  ..+|++||++++.++.|+++...++    -.+++++.+|+.++.....  ..+|+|
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~----i~N~~f~~~~ae~~~~~~~~~~~~d~V  366 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANG----IDNVEFIAGDAEEFTPAWWEGYKPDVV  366 (432)
T ss_pred             CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHHhhhccccCCCCEE
Confidence            4478999999999999999964  5799999999999999999998774    3459999999999997753  678999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      ++|||...        ..+++.+. + ..++|..++.+.+++
T Consensus       367 vvDPPR~G--------~~~~~lk~-l-~~~~p~~IvYVSCNP  398 (432)
T COG2265         367 VVDPPRAG--------ADREVLKQ-L-AKLKPKRIVYVSCNP  398 (432)
T ss_pred             EECCCCCC--------CCHHHHHH-H-HhcCCCcEEEEeCCH
Confidence            99998532        14577776 3 578999999887654

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=2.8e-07  Score=77.58  Aligned_cols=119  Identities=21%  Similarity=0.234  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCCCCe
Q 025141           87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSDPRL  158 (257)
Q Consensus        87 ~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~~rv  158 (257)
                      .|.++|-.+--.+ .+..+.|++|.|+|.++..+...  .+...+.+||.-|++++.+++++...      ...+..+++
T Consensus        68 mha~~le~L~~~L-~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l  146 (237)
T KOG1661|consen   68 MHATALEYLDDHL-QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL  146 (237)
T ss_pred             HHHHHHHHHHHhh-ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence            4555554332112 35679999999999998776643  22234599999999999999987532      234677899


Q ss_pred             EEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          159 ELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       159 ~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      .++++|++..- ....+||.|.+-+..+.  .|          +. +-..|++||.+++-.+
T Consensus       147 ~ivvGDgr~g~-~e~a~YDaIhvGAaa~~--~p----------q~-l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  147 SIVVGDGRKGY-AEQAPYDAIHVGAAASE--LP----------QE-LLDQLKPGGRLLIPVG  194 (237)
T ss_pred             EEEeCCccccC-CccCCcceEEEccCccc--cH----------HH-HHHhhccCCeEEEeec
Confidence            99999998864 34588999999876432  22          34 4567899888887543

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.53  E-value=3.6e-07  Score=76.73  Aligned_cols=92  Identities=16%  Similarity=0.196  Sum_probs=65.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvI  179 (257)
                      ++.++|||||||+|.++..+++..+ .+++++|+++++++.+++           .+++++.+|+.+.+. ..+++||+|
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~-----------~~~~~~~~d~~~~l~~~~~~sfD~V   79 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVA-----------RGVNVIQGDLDEGLEAFPDKSFDYV   79 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHH-----------cCCeEEEEEhhhcccccCCCCcCEE
Confidence            3567999999999999988876543 578999999999998864           246788899876543 334689999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP  211 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p  211 (257)
                      ++...-.+...      ...++++ +.+.+++
T Consensus        80 i~~~~l~~~~d------~~~~l~e-~~r~~~~  104 (194)
T TIGR02081        80 ILSQTLQATRN------PEEILDE-MLRVGRH  104 (194)
T ss_pred             EEhhHhHcCcC------HHHHHHH-HHHhCCe
Confidence            99754222111      2456676 5666553

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=5.1e-06  Score=68.61  Aligned_cols=127  Identities=22%  Similarity=0.226  Sum_probs=92.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ..++-+|+||||+|.+...+.+. .+.....+.||||...+..++-...+     .-+++.+..|...-++.  ++.|++
T Consensus        42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-----~~~~~~V~tdl~~~l~~--~~VDvL  114 (209)
T KOG3191|consen   42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-----RVHIDVVRTDLLSGLRN--ESVDVL  114 (209)
T ss_pred             cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-----CCccceeehhHHhhhcc--CCccEE
Confidence            34788999999999999888874 33456789999999999988877665     35689999999998876  899999


Q ss_pred             EEcCC-CCCCCCcc--------------cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          180 IGDLA-DPIEGGPC--------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       180 i~D~~-~~~~~~p~--------------~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      +.+++ -|....+.              ..-.+..++.+ +..+|+|.|++.+.....      ...+++.+.+++.
T Consensus       115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~-v~~iLSp~Gv~Ylv~~~~------N~p~ei~k~l~~~  184 (209)
T KOG3191|consen  115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQ-VPDILSPRGVFYLVALRA------NKPKEILKILEKK  184 (209)
T ss_pred             EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhh-hhhhcCcCceEEeeehhh------cCHHHHHHHHhhc
Confidence            99986 23221110              01113456777 689999999998875433      2234666666655

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.51  E-value=4.5e-07  Score=79.75  Aligned_cols=73  Identities=18%  Similarity=0.367  Sum_probs=61.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +.++||+||||.|.++..+++..  .+|+++|+|+.+++.+++.+..      .++++++.+|+.++-   -..||.|+.
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~---~~~~d~Vv~   97 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD---LPEFNKVVS   97 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC---chhceEEEE
Confidence            46799999999999999999973  5899999999999999987642      368999999987642   245899999


Q ss_pred             cCCC
Q 025141          182 DLAD  185 (257)
Q Consensus       182 D~~~  185 (257)
                      +++-
T Consensus        98 NlPy  101 (258)
T PRK14896         98 NLPY  101 (258)
T ss_pred             cCCc
Confidence            9763

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.49  E-value=2.1e-06  Score=78.09  Aligned_cols=106  Identities=25%  Similarity=0.288  Sum_probs=88.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++..|||+-+|-|.++..++++.. .+|.++||||..++..++++.+|+   -..++..+.+|+++..... ..+|.|+
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~---v~~~v~~i~gD~rev~~~~-~~aDrIi  261 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNK---VEGRVEPILGDAREVAPEL-GVADRII  261 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcC---ccceeeEEeccHHHhhhcc-ccCCEEE
Confidence            4589999999999999999999754 359999999999999999999885   3456999999999998654 7799999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      +..+..          +.+|+.. +.+.++++|++-.....+
T Consensus       262 m~~p~~----------a~~fl~~-A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         262 MGLPKS----------AHEFLPL-ALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             eCCCCc----------chhhHHH-HHHHhhcCcEEEEEeccc
Confidence            987631          3466776 788899999998776444

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.49  E-value=3.5e-08  Score=84.11  Aligned_cols=100  Identities=21%  Similarity=0.308  Sum_probs=73.9

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEEEE
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVIIG  181 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvIi~  181 (257)
                      -+++|+||||+|.+.-.+...  +.++++|||+..|++.|.+.=-.         =++.++|+..|++ ..+++||+|..
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~Y---------D~L~~Aea~~Fl~~~~~er~DLi~A  194 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLY---------DTLYVAEAVLFLEDLTQERFDLIVA  194 (287)
T ss_pred             cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccch---------HHHHHHHHHHHhhhccCCcccchhh
Confidence            589999999999998887664  46899999999999999874211         1567788888997 46789999975


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      .---+.. +   .|  ..+|.. +...|+|||.+++...
T Consensus       195 aDVl~Yl-G---~L--e~~~~~-aa~~L~~gGlfaFSvE  226 (287)
T COG4976         195 ADVLPYL-G---AL--EGLFAG-AAGLLAPGGLFAFSVE  226 (287)
T ss_pred             hhHHHhh-c---ch--hhHHHH-HHHhcCCCceEEEEec
Confidence            3211110 1   11  245565 6899999999998653

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.44  E-value=6.2e-07  Score=79.46  Aligned_cols=74  Identities=16%  Similarity=0.254  Sum_probs=58.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|.++..++++.  .+|+++|+|+++++.+++.+.       +++++++++|+.++-- ..-.+|.|+
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~~-~~~~~~~vv  110 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVDL-SELQPLKVV  110 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCCH-HHcCcceEE
Confidence            356789999999999999999974  389999999999999998652       2689999999887521 111158898


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      .+++
T Consensus       111 ~NlP  114 (272)
T PRK00274        111 ANLP  114 (272)
T ss_pred             EeCC
Confidence            8865

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.44  E-value=2.5e-06  Score=69.55  Aligned_cols=105  Identities=18%  Similarity=0.208  Sum_probs=80.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhc-CCCc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES-RKES  175 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---l~~-~~~~  175 (257)
                      .....||++|.|+|.+++.++++. ....++++|.+++.+...++.++         .++++.+|+.+.   +.+ ....
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---------~~~ii~gda~~l~~~l~e~~gq~  117 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---------GVNIINGDAFDLRTTLGEHKGQF  117 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---------CccccccchhhHHHHHhhcCCCe
Confidence            356789999999999999999962 33689999999999999888653         456899998763   333 3467


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ||.||+..+--+  -|.  -.+.+.++. +..+|..||.++.-.
T Consensus       118 ~D~viS~lPll~--~P~--~~~iaile~-~~~rl~~gg~lvqft  156 (194)
T COG3963         118 FDSVISGLPLLN--FPM--HRRIAILES-LLYRLPAGGPLVQFT  156 (194)
T ss_pred             eeeEEecccccc--CcH--HHHHHHHHH-HHHhcCCCCeEEEEE
Confidence            999999987422  221  125678888 789999999888654

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.44  E-value=1.5e-06  Score=72.41  Aligned_cols=112  Identities=22%  Similarity=0.231  Sum_probs=75.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCc---------EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVE---------KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~---------~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~  171 (257)
                      .+...+||--||+|+++.|++......         ++.+.|+|+++++.|++++...+   ....+.+...|+.+.- .
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---~~~~i~~~~~D~~~l~-~  102 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---VEDYIDFIQWDARELP-L  102 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGG-G
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc---cCCceEEEecchhhcc-c
Confidence            345789999999999998887642222         38899999999999999987543   2457899999998864 3


Q ss_pred             CCCceeEEEEcCCCCCCCCc---ccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          172 RKESYDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       172 ~~~~fDvIi~D~~~~~~~~p---~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ..+.+|+|++|+|-....+.   ...|| .+|++. ++++|++..++++.
T Consensus       103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly-~~~~~~-~~~~l~~~~v~l~~  150 (179)
T PF01170_consen  103 PDGSVDAIVTNPPYGRRLGSKKDLEKLY-RQFLRE-LKRVLKPRAVFLTT  150 (179)
T ss_dssp             TTSBSCEEEEE--STTSHCHHHHHHHHH-HHHHHH-HHCHSTTCEEEEEE
T ss_pred             ccCCCCEEEECcchhhhccCHHHHHHHH-HHHHHH-HHHHCCCCEEEEEE
Confidence            45789999999974332111   11233 567787 79999995555554

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.43  E-value=1.7e-06  Score=74.65  Aligned_cols=110  Identities=13%  Similarity=0.067  Sum_probs=77.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc--------cCCCCCCCeEEEEcchHHHHh--
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--------KEAFSDPRLELVINDARAELE--  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~--------~~~~~~~rv~i~~~Da~~~l~--  170 (257)
                      +++.+||+.|||.|.-+..|+.. + -+|++||+++..++.+.+.....        ...+...+++++++|.+++-.  
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~-G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSK-G-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhC-C-CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            45679999999999999999996 3 37999999999999986632111        011234689999999988622  


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       171 ~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ...++||+|+--.+-..  -|  .-....+.+. +.+.|+|||.++.
T Consensus       120 ~~~~~fD~VyDra~~~A--lp--p~~R~~Y~~~-l~~lL~pgg~lll  161 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIA--LP--NDLRTNYAKM-MLEVCSNNTQILL  161 (226)
T ss_pred             cccCCcCeeeeehhHhc--CC--HHHHHHHHHH-HHHHhCCCcEEEE
Confidence            22368999875544211  12  1124567777 7999999997664

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=1.7e-06  Score=75.86  Aligned_cols=74  Identities=18%  Similarity=0.226  Sum_probs=61.1

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      ...||+||.|.|+++..+++..  .+|++||+|+..++..++.+..      .++++++++|+.++=-..-.+++.|+.+
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d~~~l~~~~~vVaN  102 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFDFPSLAQPYKVVAN  102 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCcchhhcCCCEEEEc
Confidence            5789999999999999999964  5899999999999999988752      3699999999977522111178999999


Q ss_pred             CC
Q 025141          183 LA  184 (257)
Q Consensus       183 ~~  184 (257)
                      .|
T Consensus       103 lP  104 (259)
T COG0030         103 LP  104 (259)
T ss_pred             CC
Confidence            76

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.42  E-value=5e-06  Score=70.42  Aligned_cols=144  Identities=15%  Similarity=0.153  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH
Q 025141           87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR  166 (257)
Q Consensus        87 ~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~  166 (257)
                      .|.++++...   ..+..+||.+|.|-|.+...+-..++ .+-+.+|-.|.|.+..|++-..     +..+|.+..+-=.
T Consensus        89 piMha~A~ai---~tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~We  159 (271)
T KOG1709|consen   89 PIMHALAEAI---STKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWE  159 (271)
T ss_pred             HHHHHHHHHH---hhCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcccc-----cccceEEEecchH
Confidence            4555444222   25788999999999999999888766 4778899999999999987543     3467777776544


Q ss_pred             HHHhc-CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCce
Q 025141          167 AELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG  245 (257)
Q Consensus       167 ~~l~~-~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v  245 (257)
                      +.+.. .++.||-|+-|.+.+.      .--+++|++. +-+.|||+|++..--+.    ...+      ..+..+++..
T Consensus       160 Dvl~~L~d~~FDGI~yDTy~e~------yEdl~~~hqh-~~rLLkP~gv~SyfNg~----~~~~------~~~~~vy~~l  222 (271)
T KOG1709|consen  160 DVLNTLPDKHFDGIYYDTYSEL------YEDLRHFHQH-VVRLLKPEGVFSYFNGL----GADN------LMFYDVYKIL  222 (271)
T ss_pred             hhhccccccCcceeEeechhhH------HHHHHHHHHH-HhhhcCCCceEEEecCc----ccch------hhhhhhhhee
Confidence            44444 2467999999998532      1225789998 89999999999853221    1111      2244556666


Q ss_pred             EEEeecCcccc
Q 025141          246 CCALFSSYSFF  256 (257)
Q Consensus       246 ~~~~~~~~~~~  256 (257)
                      ..+...++++=
T Consensus       223 V~iev~~~g~~  233 (271)
T KOG1709|consen  223 VMIEVATYGVP  233 (271)
T ss_pred             EEEEeecCCCc
Confidence            66666666553

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.38  E-value=2.7e-06  Score=74.49  Aligned_cols=73  Identities=22%  Similarity=0.371  Sum_probs=59.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCcee---
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD---  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fD---  177 (257)
                      .+..+||+||||+|.++..+++..  .+++++|+|+.+++.+++.+..      .++++++.+|+.+.-.   ..||   
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~~~d~~~   96 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---PDFPKQL   96 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---hHcCCcc
Confidence            456899999999999999999875  4699999999999999987642      4689999999876432   2466   


Q ss_pred             EEEEcCC
Q 025141          178 VIIGDLA  184 (257)
Q Consensus       178 vIi~D~~  184 (257)
                      +|+.+++
T Consensus        97 ~vvsNlP  103 (253)
T TIGR00755        97 KVVSNLP  103 (253)
T ss_pred             eEEEcCC
Confidence            8888765

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.38  E-value=1.3e-06  Score=75.02  Aligned_cols=107  Identities=14%  Similarity=0.145  Sum_probs=75.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-hhhhcc-------CCCCCCCeEEEEcchHHHHhcC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS-YLVVNK-------EAFSDPRLELVINDARAELESR  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~-~~~~~~-------~~~~~~rv~i~~~Da~~~l~~~  172 (257)
                      +.+.+||+.|||.|.-+..++.+ + -+|++||+++..++.+.+ +...+.       ..+...+++++.+|.+++-...
T Consensus        36 ~~~~rvLvPgCG~g~D~~~La~~-G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~  113 (218)
T PF05724_consen   36 KPGGRVLVPGCGKGYDMLWLAEQ-G-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED  113 (218)
T ss_dssp             STSEEEEETTTTTSCHHHHHHHT-T-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred             CCCCeEEEeCCCChHHHHHHHHC-C-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence            45569999999999999999996 4 589999999999999843 221010       0134578999999998864444


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcE
Q 025141          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI  214 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGi  214 (257)
                      .++||+|+=-.+-..  -|  .-....+.+. +++.|+|||.
T Consensus       114 ~g~fD~iyDr~~l~A--lp--p~~R~~Ya~~-l~~ll~p~g~  150 (218)
T PF05724_consen  114 VGKFDLIYDRTFLCA--LP--PEMRERYAQQ-LASLLKPGGR  150 (218)
T ss_dssp             HHSEEEEEECSSTTT--S---GGGHHHHHHH-HHHCEEEEEE
T ss_pred             cCCceEEEEeccccc--CC--HHHHHHHHHH-HHHHhCCCCc
Confidence            468999986554321  22  1235677777 8999999998

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.35  E-value=2e-06  Score=73.03  Aligned_cols=106  Identities=19%  Similarity=0.157  Sum_probs=77.7

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      +.=|||||||+|..+..+... + -..++|||+|.|+++|.+. ...        -.++.+|.=+-+...+++||-+|+-
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~-G-h~wiGvDiSpsML~~a~~~-e~e--------gdlil~DMG~GlpfrpGtFDg~ISI  119 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS-G-HQWIGVDISPSMLEQAVER-ELE--------GDLILCDMGEGLPFRPGTFDGVISI  119 (270)
T ss_pred             CcEEEEeccCCCcchheeccC-C-ceEEeecCCHHHHHHHHHh-hhh--------cCeeeeecCCCCCCCCCccceEEEe
Confidence            667999999999999887763 4 4788999999999999962 111        2466677666676778999987775


Q ss_pred             CCCCCC-------CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          183 LADPIE-------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       183 ~~~~~~-------~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      ..-.|.       ..|.  .--.-||.. +..+|++|+..++|..+.
T Consensus       120 SAvQWLcnA~~s~~~P~--~Rl~~FF~t-Ly~~l~rg~raV~QfYpe  163 (270)
T KOG1541|consen  120 SAVQWLCNADKSLHVPK--KRLLRFFGT-LYSCLKRGARAVLQFYPE  163 (270)
T ss_pred             eeeeeecccCccccChH--HHHHHHhhh-hhhhhccCceeEEEeccc
Confidence            543221       1221  122478998 799999999999998654

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.27  E-value=6.7e-07  Score=67.59  Aligned_cols=97  Identities=22%  Similarity=0.147  Sum_probs=45.8

Q ss_pred             EEEeccchHHHHHHHhcC-CC--cEEEEEECCHH---HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-CceeEE
Q 025141          107 FIMGGGEGSTAREILRHK-TV--EKVVMCDIDEE---VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVI  179 (257)
Q Consensus       107 L~IG~G~G~~~~~l~~~~-~~--~~v~~VEid~~---vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-~~fDvI  179 (257)
                      |+||+..|..+..+++.- ..  .++++||.++.   .-+..++ ..      ...+++++.+|..+.+.... ++||+|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~------~~~~~~~~~g~s~~~l~~~~~~~~dli   73 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AG------LSDRVEFIQGDSPDFLPSLPDGPIDLI   73 (106)
T ss_dssp             --------------------------EEEESS-------------GG------G-BTEEEEES-THHHHHHHHH--EEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cC------CCCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence            689998999888777642 22  37999999995   3333333 11      23589999999999887655 899999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++|.....       -.....++. +.++|+|||+++++
T Consensus        74 ~iDg~H~~-------~~~~~dl~~-~~~~l~~ggviv~d  104 (106)
T PF13578_consen   74 FIDGDHSY-------EAVLRDLEN-ALPRLAPGGVIVFD  104 (106)
T ss_dssp             EEES---H-------HHHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             EECCCCCH-------HHHHHHHHH-HHHHcCCCeEEEEe
Confidence            99975311       123456777 68999999999875

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.27  E-value=4.5e-06  Score=82.74  Aligned_cols=113  Identities=15%  Similarity=0.120  Sum_probs=78.1

Q ss_pred             CCeEEEEeccchHHHHHHHhc--------CC----CcEEEEEECCHHH---HHHHH-----------hhhh-h----cc-
Q 025141          103 PKTIFIMGGGEGSTAREILRH--------KT----VEKVVMCDIDEEV---VEFCK-----------SYLV-V----NK-  150 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~--------~~----~~~v~~VEid~~v---i~~a~-----------~~~~-~----~~-  150 (257)
                      .-+||++|.|+|.....+.+.        ++    .-+++.+|.+|..   +..+-           +... .    ++ 
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            468999999999965444321        11    2478999986622   22221           1110 0    00 


Q ss_pred             --CCCCCC--CeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          151 --EAFSDP--RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       151 --~~~~~~--rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                        -.+.+.  +++++.+|+++.++....++|+|++|.|+|.. .|  .+++.++|+. ++++++|||++++.+
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np--~~W~~~~~~~-l~~~~~~~~~~~t~t  206 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-NP--DMWSPNLFNA-LARLARPGATLATFT  206 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-Ch--hhccHHHHHH-HHHHhCCCCEEEEee
Confidence              011223  45688999999998777789999999998753 34  7999999999 899999999999754

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.26  E-value=3.1e-06  Score=77.80  Aligned_cols=117  Identities=18%  Similarity=0.223  Sum_probs=73.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---------
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---------  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---------  171 (257)
                      +.+.+|||+-||.|.++..+++.  ..+|++||+++.+++.|++++..++    -.+++++.+++.++...         
T Consensus       195 ~~~~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~----i~n~~f~~~~~~~~~~~~~~~r~~~~  268 (352)
T PF05958_consen  195 LSKGDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG----IDNVEFIRGDAEDFAKALAKAREFNR  268 (352)
T ss_dssp             T-TTEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred             cCCCcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC----CCcceEEEeeccchhHHHHhhHHHHh
Confidence            34458999999999999999885  4699999999999999999998873    46899999887665321         


Q ss_pred             ------CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q 025141          172 ------RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (257)
Q Consensus       172 ------~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F  242 (257)
                            ...++|+|++|||...   .     ...+.+. +.+ +  .=++.+-++       +..+.+=++.|.+.|
T Consensus       269 ~~~~~~~~~~~d~vilDPPR~G---~-----~~~~~~~-~~~-~--~~ivYvSCn-------P~tlaRDl~~L~~~y  326 (352)
T PF05958_consen  269 LKGIDLKSFKFDAVILDPPRAG---L-----DEKVIEL-IKK-L--KRIVYVSCN-------PATLARDLKILKEGY  326 (352)
T ss_dssp             GGGS-GGCTTESEEEE---TT----S-----CHHHHHH-HHH-S--SEEEEEES--------HHHHHHHHHHHHCCE
T ss_pred             hhhhhhhhcCCCEEEEcCCCCC---c-----hHHHHHH-Hhc-C--CeEEEEECC-------HHHHHHHHHHHhhcC
Confidence                  1236999999998532   1     2445555 442 3  335555443       344444445565544

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.25  E-value=4.6e-06  Score=69.01  Aligned_cols=108  Identities=22%  Similarity=0.293  Sum_probs=63.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH---hcCCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ESRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l---~~~~~~fD  177 (257)
                      .++++||+||+|+|..+..+++..+..+|++-|.++ +++..+.+...+.. ...+++++..-|=-+-+   .....+||
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence            467899999999999998888874457999999999 99999999876632 23467776664311111   11246899


Q ss_pred             EEEEc-CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+.. ..-    .+   -....+++. +++.|+++|.+++-
T Consensus       122 ~IlasDv~Y----~~---~~~~~L~~t-l~~ll~~~~~vl~~  155 (173)
T PF10294_consen  122 VILASDVLY----DE---ELFEPLVRT-LKRLLKPNGKVLLA  155 (173)
T ss_dssp             EEEEES--S-----G---GGHHHHHHH-HHHHBTT-TTEEEE
T ss_pred             EEEEecccc----hH---HHHHHHHHH-HHHHhCCCCEEEEE
Confidence            98864 211    11   123566776 78999998875543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=1.9e-05  Score=72.70  Aligned_cols=138  Identities=17%  Similarity=0.150  Sum_probs=93.8

Q ss_pred             HhhcCCC-CCeEEEEeccchHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC
Q 025141           96 ALLHHPN-PKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR  172 (257)
Q Consensus        96 ~l~~~~~-~~~VL~IG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~  172 (257)
                      +.++.|+ ..+|||++.+.|+=+.+++.....  ..|+++|+++.=++..++++...+    -.++.+++.|++.+....
T Consensus       149 a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG----~~nv~~~~~d~~~~~~~~  224 (355)
T COG0144         149 ALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG----VRNVIVVNKDARRLAELL  224 (355)
T ss_pred             HHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC----CCceEEEecccccccccc
Confidence            4444554 489999999999988777775332  457999999999999999887542    346889999998776553


Q ss_pred             C--CceeEEEEcCCCCCC----CCccc------------CCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHH
Q 025141          173 K--ESYDVIIGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI  234 (257)
Q Consensus       173 ~--~~fDvIi~D~~~~~~----~~p~~------------~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~  234 (257)
                      .  ++||.|++|++-...    ..|..            .-+..+++.. +.+.|||||+++.-+.+.    .++..+..
T Consensus       225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~-a~~~lk~GG~LVYSTCS~----~~eENE~v  299 (355)
T COG0144         225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAA-ALKLLKPGGVLVYSTCSL----TPEENEEV  299 (355)
T ss_pred             cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEccCC----chhcCHHH
Confidence            3  369999999983221    11210            1113577887 789999999998765443    23334455


Q ss_pred             HHHHhhhC
Q 025141          235 YNTLRQVF  242 (257)
Q Consensus       235 ~~~l~~~F  242 (257)
                      .+.+-+..
T Consensus       300 V~~~L~~~  307 (355)
T COG0144         300 VERFLERH  307 (355)
T ss_pred             HHHHHHhC
Confidence            54444333

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.23  E-value=1.2e-05  Score=72.97  Aligned_cols=121  Identities=23%  Similarity=0.117  Sum_probs=87.0

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chH
Q 025141           88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DAR  166 (257)
Q Consensus        88 y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~-Da~  166 (257)
                      +.+.|+.++.  ..++..|||=-||||+++.++.-. + .++.+.|+|..+++-|+.++..-+    -+...++.. ||.
T Consensus       185 lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~-G-~~viG~Did~~mv~gak~Nl~~y~----i~~~~~~~~~Da~  256 (347)
T COG1041         185 LARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM-G-ARVIGSDIDERMVRGAKINLEYYG----IEDYPVLKVLDAT  256 (347)
T ss_pred             HHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc-C-ceEeecchHHHHHhhhhhhhhhhC----cCceeEEEecccc
Confidence            4455554433  345679999999999999998775 4 699999999999999999997542    245555555 875


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCC-Ccc---cCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          167 AELESRKESYDVIIGDLADPIEG-GPC---YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       167 ~~l~~~~~~fDvIi~D~~~~~~~-~p~---~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      + +.-.+.++|.|+.|+|-+... ...   ..| -.++++. +.++|++||.+++..
T Consensus       257 ~-lpl~~~~vdaIatDPPYGrst~~~~~~l~~L-y~~~le~-~~evLk~gG~~vf~~  310 (347)
T COG1041         257 N-LPLRDNSVDAIATDPPYGRSTKIKGEGLDEL-YEEALES-ASEVLKPGGRIVFAA  310 (347)
T ss_pred             c-CCCCCCccceEEecCCCCcccccccccHHHH-HHHHHHH-HHHHhhcCcEEEEec
Confidence            5 333335699999999843221 111   123 3678888 799999999999864

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.22  E-value=1.8e-06  Score=71.53  Aligned_cols=126  Identities=18%  Similarity=0.262  Sum_probs=72.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-----HHHHhc----
Q 025141          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-----RAELES----  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da-----~~~l~~----  171 (257)
                      ++.+|||||++.|+.+..++++. ...+|.+||+.+.-      -         .+.+..+.+|.     .+.++.    
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~---------~~~~~~i~~d~~~~~~~~~i~~~~~~   87 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------P---------LQNVSFIQGDITNPENIKDIRKLLPE   87 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S----------TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------c---------ccceeeeecccchhhHHHhhhhhccc
Confidence            56899999999999999999975 35799999998871      0         12223333332     222322    


Q ss_pred             CCCceeEEEEcCCCCCCCCc------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCce
Q 025141          172 RKESYDVIIGDLADPIEGGP------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG  245 (257)
Q Consensus       172 ~~~~fDvIi~D~~~~~~~~p------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v  245 (257)
                      ..+++|+|++|........+      ...| ....+.. +.+.|+|||.+++..-     ..... ..++..++..|..+
T Consensus        88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l-~~~~l~~-a~~~L~~gG~~v~K~~-----~~~~~-~~~~~~l~~~F~~v  159 (181)
T PF01728_consen   88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRL-ILSQLLL-ALELLKPGGTFVIKVF-----KGPEI-EELIYLLKRCFSKV  159 (181)
T ss_dssp             TTCSESEEEE-------SSHHSSHHHHHHH-HHHHHHH-HHHHHCTTEEEEEEES-----SSTTS-HHHHHHHHHHHHHE
T ss_pred             cccCcceeccccccCCCCchhhHHHHHHHH-HHHHHHH-HHhhhcCCCEEEEEec-----cCccH-HHHHHHHHhCCeEE
Confidence            33689999999843221111      0011 1223333 4578999998887642     11222 36777777788777


Q ss_pred             EEEee
Q 025141          246 CCALF  250 (257)
Q Consensus       246 ~~~~~  250 (257)
                      ..+.-
T Consensus       160 ~~~Kp  164 (181)
T PF01728_consen  160 KIVKP  164 (181)
T ss_dssp             EEEE-
T ss_pred             EEEEC
Confidence            77654

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.22  E-value=3.3e-06  Score=76.21  Aligned_cols=118  Identities=15%  Similarity=0.177  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH
Q 025141           88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA  167 (257)
Q Consensus        88 y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~  167 (257)
                      |...+.+...+  -+.|.|||+|||+|-++...++. +..+|.+||-+..+ +.|++-+..|+   .+..++++.+...+
T Consensus        48 Yr~~i~~n~~l--f~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~N~---~~~ii~vi~gkvEd  120 (346)
T KOG1499|consen   48 YRNAILQNKHL--FKDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKDNG---LEDVITVIKGKVED  120 (346)
T ss_pred             HHHHHhcchhh--cCCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHhcC---ccceEEEeecceEE
Confidence            55444433332  35789999999999999999996 57899999996554 99998876553   34578999888766


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      . .-+.++.|+|++..-.-+..- ..-|-+.-+.+   -+-|+|||++.-
T Consensus       121 i-~LP~eKVDiIvSEWMGy~Ll~-EsMldsVl~AR---dkwL~~~G~i~P  165 (346)
T KOG1499|consen  121 I-ELPVEKVDIIVSEWMGYFLLY-ESMLDSVLYAR---DKWLKEGGLIYP  165 (346)
T ss_pred             E-ecCccceeEEeehhhhHHHHH-hhhhhhhhhhh---hhccCCCceEcc
Confidence            5 223489999999864211000 00111222222   478999998863

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.21  E-value=7.9e-06  Score=73.20  Aligned_cols=77  Identities=23%  Similarity=0.176  Sum_probs=63.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC---cee
Q 025141          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE---SYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~---~fD  177 (257)
                      +...+||++||.|+.+..+++.. +..+|+++|.||++++.|++.+.-      ..|++++++|..++.....+   ++|
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~l~~~l~~~~~~vD   92 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSNLKEVLAEGLGKVD   92 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHHHHHHHHcCCCccC
Confidence            34689999999999999999874 357999999999999999987531      25899999999988654333   799


Q ss_pred             EEEEcCC
Q 025141          178 VIIGDLA  184 (257)
Q Consensus       178 vIi~D~~  184 (257)
                      .|+.|+-
T Consensus        93 gIl~DLG   99 (296)
T PRK00050         93 GILLDLG   99 (296)
T ss_pred             EEEECCC
Confidence            9999985

>PRK10742 putative methyltransferase; Provisional

Probab=98.20  E-value=1.4e-05  Score=69.48  Aligned_cols=81  Identities=17%  Similarity=0.133  Sum_probs=67.1

Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc--cCCCC---CCCeEEEEcchHHHHhcCCCceeEE
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--KEAFS---DPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~--~~~~~---~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      +|||+-+|.|..+.+++.. + ++|++||-+|.+..+.++.+...  .....   ..|++++++|+.+|++...+.||+|
T Consensus        91 ~VLD~TAGlG~Da~~las~-G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV  168 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASV-G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_pred             EEEECCCCccHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence            8999999999999999986 4 46999999999999999887632  11111   2589999999999998877789999


Q ss_pred             EEcCCCCC
Q 025141          180 IGDLADPI  187 (257)
Q Consensus       180 i~D~~~~~  187 (257)
                      ++||+-|.
T Consensus       169 YlDPMfp~  176 (250)
T PRK10742        169 YLDPMFPH  176 (250)
T ss_pred             EECCCCCC
Confidence            99997544

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.19  E-value=1.5e-05  Score=69.49  Aligned_cols=92  Identities=15%  Similarity=0.223  Sum_probs=65.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ..+++||||+|+|.++..+..+.  .+|.+-|+++.|....++.           ..+++-.|  ++ ...+.+||+|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-----------g~~vl~~~--~w-~~~~~~fDvIsc  157 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-----------GFTVLDID--DW-QQTDFKFDVISC  157 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-----------CCeEEehh--hh-hccCCceEEEee
Confidence            45789999999999999998864  5899999999997554432           23333333  23 334578999976


Q ss_pred             c-CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          182 D-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       182 D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      = .-|-. ..|      ...++. +++.|+|+|++++
T Consensus       158 LNvLDRc-~~P------~~LL~~-i~~~l~p~G~lil  186 (265)
T PF05219_consen  158 LNVLDRC-DRP------LTLLRD-IRRALKPNGRLIL  186 (265)
T ss_pred             hhhhhcc-CCH------HHHHHH-HHHHhCCCCEEEE
Confidence            3 33322 133      356788 7999999998875

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.17  E-value=3.2e-06  Score=76.99  Aligned_cols=114  Identities=22%  Similarity=0.273  Sum_probs=71.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCC-----CCCCeEEEEcchHHH-Hhc---
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAF-----SDPRLELVINDARAE-LES---  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~-----~~~rv~i~~~Da~~~-l~~---  171 (257)
                      ++.+|||||||-|+-+....+. ++..++++||+++.++.|++... +.....     .+=...++.+|+..- +..   
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            5689999999977755544543 56899999999999999998772 211100     012346788887532 221   


Q ss_pred             -CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          172 -RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       172 -~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                       ...+||+|-+-..-+..-.  ..-..+.+++. +...|+|||+++.-+
T Consensus       141 ~~~~~FDvVScQFalHY~Fe--se~~ar~~l~N-vs~~Lk~GG~FIgT~  186 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFE--SEEKARQFLKN-VSSLLKPGGYFIGTT  186 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGS--SHHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             ccCCCcceeehHHHHHHhcC--CHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence             2358999988765332111  12224568898 799999999998653

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.15  E-value=8.6e-06  Score=71.23  Aligned_cols=76  Identities=20%  Similarity=0.318  Sum_probs=62.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.-||+||.|+|.++..++..  .++|+++|+||.++....+.+....   ...+++++++|.   ++..-..||.++
T Consensus        57 k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp---~~~kLqV~~gD~---lK~d~P~fd~cV  128 (315)
T KOG0820|consen   57 KPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTP---KSGKLQVLHGDF---LKTDLPRFDGCV  128 (315)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCC---ccceeeEEeccc---ccCCCcccceee
Confidence            45678999999999999999985  3799999999999998888775331   357999999994   545457899999


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      .+.+
T Consensus       129 sNlP  132 (315)
T KOG0820|consen  129 SNLP  132 (315)
T ss_pred             ccCC
Confidence            9876

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=98.15  E-value=4.2e-06  Score=65.60  Aligned_cols=72  Identities=22%  Similarity=0.359  Sum_probs=53.3

Q ss_pred             CCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025141          156 PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (257)
Q Consensus       156 ~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~  235 (257)
                      -+++++.+|+++.++....++|+|+.|+|+|.. .|  .+++.++++. ++++++|||++++.+.       .   ..+.
T Consensus        31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-nP--elWs~e~~~~-l~~~~~~~~~l~Tys~-------a---~~Vr   96 (124)
T PF05430_consen   31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-NP--ELWSEELFKK-LARLSKPGGTLATYSS-------A---GAVR   96 (124)
T ss_dssp             EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-SG--GGSSHHHHHH-HHHHEEEEEEEEES---------B---HHHH
T ss_pred             EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-Cc--ccCCHHHHHH-HHHHhCCCcEEEEeec-------h---HHHH
Confidence            355789999999999888999999999998763 44  7999999999 8999999999998542       1   2455


Q ss_pred             HHHhhh
Q 025141          236 NTLRQV  241 (257)
Q Consensus       236 ~~l~~~  241 (257)
                      +.|.++
T Consensus        97 ~~L~~a  102 (124)
T PF05430_consen   97 RALQQA  102 (124)
T ss_dssp             HHHHHC
T ss_pred             HHHHHc
Confidence            666665

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=4e-05  Score=67.11  Aligned_cols=126  Identities=18%  Similarity=0.125  Sum_probs=89.5

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcCCCce
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRKESY  176 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~~~~f  176 (257)
                      ..+...||+-|.|+|+++..+++. .+..++...|....-.+.|++.|...+   -..++++++.|.-.  |.. ....+
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg---i~~~vt~~hrDVc~~GF~~-ks~~a  178 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG---IGDNVTVTHRDVCGSGFLI-KSLKA  178 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC---CCcceEEEEeecccCCccc-ccccc
Confidence            345678999999999999999985 455799999999999999999997654   35689999988533  211 24689


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh-hCCceE
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ-VFKCGC  246 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~-~F~~v~  246 (257)
                      |.|++|.+.||.+.|.            +.++|+.+|..+.++. |+    .+...+....|++ -|-.+.
T Consensus       179 DaVFLDlPaPw~AiPh------------a~~~lk~~g~r~csFS-PC----IEQvqrtce~l~~~gf~~i~  232 (314)
T KOG2915|consen  179 DAVFLDLPAPWEAIPH------------AAKILKDEGGRLCSFS-PC----IEQVQRTCEALRSLGFIEIE  232 (314)
T ss_pred             ceEEEcCCChhhhhhh------------hHHHhhhcCceEEecc-HH----HHHHHHHHHHHHhCCCceEE
Confidence            9999999999876552            3448888886555542 32    2333444445554 354443

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.10  E-value=2.8e-05  Score=75.04  Aligned_cols=79  Identities=16%  Similarity=0.229  Sum_probs=56.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCC--------CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH----
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKT--------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL----  169 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~--------~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l----  169 (257)
                      ...+|||.|||+|.+...++.+..        ..+++++|+|+..++.++..+....    ....+++.+|.....    
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~  106 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI  106 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence            456999999999999887776321        2478999999999999998875432    223566666654322    


Q ss_pred             hcCCCceeEEEEcCC
Q 025141          170 ESRKESYDVIIGDLA  184 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~  184 (257)
                      ....++||+|+.+||
T Consensus       107 ~~~~~~fD~IIgNPP  121 (524)
T TIGR02987       107 ESYLDLFDIVITNPP  121 (524)
T ss_pred             ccccCcccEEEeCCC
Confidence            112368999999997

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.08  E-value=1.1e-05  Score=65.81  Aligned_cols=80  Identities=10%  Similarity=-0.033  Sum_probs=57.5

Q ss_pred             EEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcC
Q 025141          130 VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL  209 (257)
Q Consensus       130 ~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L  209 (257)
                      +++|+++++++.|++....... ...++++++.+|+.+. ...++.||+|++...-.+.  +    -..+++++ ++++|
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~--~----d~~~~l~e-i~rvL   71 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKAR-SCYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNV--V----DRLRAMKE-MYRVL   71 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccc-cCCCceEEEEechhhC-CCCCCCeeEEEecchhhcC--C----CHHHHHHH-HHHHc
Confidence            5899999999999876543211 0135799999998774 4455789999986432221  1    13578899 79999


Q ss_pred             CCCcEEEEe
Q 025141          210 NPEGIFVTQ  218 (257)
Q Consensus       210 ~pgGil~~~  218 (257)
                      ||||.+++.
T Consensus        72 kpGG~l~i~   80 (160)
T PLN02232         72 KPGSRVSIL   80 (160)
T ss_pred             CcCeEEEEE
Confidence            999998764

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.07  E-value=8.9e-05  Score=62.04  Aligned_cols=101  Identities=22%  Similarity=0.383  Sum_probs=72.8

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~  183 (257)
                      .+++|||.|+|.=+.-++=..+..+++.||-...=+...+.-....    .-++++++++.+.+  .....+||+|++-+
T Consensus        50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~--~~~~~~fd~v~aRA  123 (184)
T PF02527_consen   50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL----GLSNVEVINGRAEE--PEYRESFDVVTARA  123 (184)
T ss_dssp             SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH----T-SSEEEEES-HHH--TTTTT-EEEEEEES
T ss_pred             ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh----CCCCEEEEEeeecc--cccCCCccEEEeeh
Confidence            3899999999974433333234579999999998887777655422    23589999999888  45568999999988


Q ss_pred             CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      ..+.          ..+++. +...|++||.++..-|.
T Consensus       124 v~~l----------~~l~~~-~~~~l~~~G~~l~~KG~  150 (184)
T PF02527_consen  124 VAPL----------DKLLEL-ARPLLKPGGRLLAYKGP  150 (184)
T ss_dssp             SSSH----------HHHHHH-HGGGEEEEEEEEEEESS
T ss_pred             hcCH----------HHHHHH-HHHhcCCCCEEEEEcCC
Confidence            7431          356676 68999999999887653

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.06  E-value=1.2e-05  Score=71.97  Aligned_cols=115  Identities=16%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCC--CCCCeEEEEcchHHHH-----hcC
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF--SDPRLELVINDARAEL-----ESR  172 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~--~~~rv~i~~~Da~~~l-----~~~  172 (257)
                      .++...+|++|||-|+-+....+ .++..++++||....|+.|++...-...-.  ..=.+.++.+|...--     ...
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~k-AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~  193 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDK-AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK  193 (389)
T ss_pred             hccccccceeccCCcccHhHhhh-hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence            35668899999999998877666 367899999999999999998764221000  0014678889886532     112


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +.+||+|-+-..-+..-..  .--.+-+++. +.++|+|||+++-.
T Consensus       194 dp~fDivScQF~~HYaFet--ee~ar~~l~N-va~~LkpGG~FIgT  236 (389)
T KOG1975|consen  194 DPRFDIVSCQFAFHYAFET--EESARIALRN-VAKCLKPGGVFIGT  236 (389)
T ss_pred             CCCcceeeeeeeEeeeecc--HHHHHHHHHH-HHhhcCCCcEEEEe
Confidence            3459999877543221010  1112457777 78999999999864

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.06  E-value=5.9e-06  Score=70.71  Aligned_cols=101  Identities=26%  Similarity=0.433  Sum_probs=79.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCe--EEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL--ELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv--~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ..-+.+++|||+-|.+.+.+.+. ++.+++.+|.+-.+++.++.-        +||.+  ...++| .+++.-.+.++|+
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~--------qdp~i~~~~~v~D-EE~Ldf~ens~DL  140 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA--------QDPSIETSYFVGD-EEFLDFKENSVDL  140 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc--------CCCceEEEEEecc-hhcccccccchhh
Confidence            34567999999999999999985 588999999999999999864        34554  445666 5677767789999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |++...-+|.-    +|  +..+.. ++..|||+|.++..
T Consensus       141 iisSlslHW~N----dL--Pg~m~~-ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  141 IISSLSLHWTN----DL--PGSMIQ-CKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhhhhhhc----cC--chHHHH-HHHhcCCCccchhH
Confidence            99998877731    22  345667 59999999999854

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.06  E-value=4e-05  Score=68.97  Aligned_cols=103  Identities=19%  Similarity=0.306  Sum_probs=76.3

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ..+-||++|||+|.+...++.. +.++|.+||-+ ++.+.||+...-+   .-..|+.++.+-..+.  +.+++.|+||+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N---~~~~rItVI~GKiEdi--eLPEk~DviIS  249 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASN---NLADRITVIPGKIEDI--ELPEKVDVIIS  249 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcC---CccceEEEccCccccc--cCchhccEEEe
Confidence            4678999999999999888874 67899999984 5778888876543   2457999998875443  45689999999


Q ss_pred             cCCCCCCCCcccCCchH---HHHHHHHcCcCCCCcEEEEec
Q 025141          182 DLADPIEGGPCYKLYTK---SFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~---ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .+-.       .-|++.   |-|-. +++-|+|+|.+.-..
T Consensus       250 EPMG-------~mL~NERMLEsYl~-Ark~l~P~GkMfPT~  282 (517)
T KOG1500|consen  250 EPMG-------YMLVNERMLESYLH-ARKWLKPNGKMFPTV  282 (517)
T ss_pred             ccch-------hhhhhHHHHHHHHH-HHhhcCCCCcccCcc
Confidence            8642       124433   44554 589999999887443

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.03  E-value=6.7e-06  Score=73.92  Aligned_cols=114  Identities=17%  Similarity=0.180  Sum_probs=71.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhc-------CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-C
Q 025141          102 NPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K  173 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~-------~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~  173 (257)
                      +..+|||-.||+|+++.++.++       ....++.++|+|+..+.+|+-++.+.+.  ......+..+|....-... .
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~--~~~~~~i~~~d~l~~~~~~~~  123 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI--DNSNINIIQGDSLENDKFIKN  123 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH--HCBGCEEEES-TTTSHSCTST
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc--ccccccccccccccccccccc
Confidence            4457999999999998887763       1346899999999999999987654421  1234568888875543322 4


Q ss_pred             CceeEEEEcCCCCCC--CCc---ccC----------CchHHHHHHHHcCcCCCCcEEEEe
Q 025141          174 ESYDVIIGDLADPIE--GGP---CYK----------LYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~--~~p---~~~----------L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .+||+|+++||-...  ..+   ...          -...-|++. +.+.|+++|.+++-
T Consensus       124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~~G~~~~I  182 (311)
T PF02384_consen  124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEH-ALSLLKPGGRAAII  182 (311)
T ss_dssp             --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             cccccccCCCCccccccccccccccccccccCCCccchhhhhHHH-HHhhcccccceeEE
Confidence            789999999973211  000   000          011247788 68899999976653

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.00  E-value=4.1e-05  Score=67.84  Aligned_cols=108  Identities=18%  Similarity=0.282  Sum_probs=64.0

Q ss_pred             CCCeEEEEeccchHHHH-HHHh-cCCCcEEEEEECCHHHHHHHHhhhh-hccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          102 NPKTIFIMGGGEGSTAR-EILR-HKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~-~l~~-~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .|++|+.||+|.==++. .+++ +.....|+.+|+||+.++.+++-.. ..+   -..+.+++.+|+.+.-. .-..||+
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~---L~~~m~f~~~d~~~~~~-dl~~~Dv  195 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG---LSKRMSFITADVLDVTY-DLKEYDV  195 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H---H-SSEEEEES-GGGG-G-G----SE
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc---ccCCeEEEecchhcccc-ccccCCE
Confidence            46899999999655444 4443 3334689999999999999998765 222   25789999999876432 2368999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |++.+.-+....+     -.+.++. +.+.++||.++++..
T Consensus       196 V~lAalVg~~~e~-----K~~Il~~-l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  196 VFLAALVGMDAEP-----KEEILEH-LAKHMAPGARLVVRS  230 (276)
T ss_dssp             EEE-TT-S----S-----HHHHHHH-HHHHS-TTSEEEEEE
T ss_pred             EEEhhhcccccch-----HHHHHHH-HHhhCCCCcEEEEec
Confidence            9998864322223     3578888 799999999999874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.99  E-value=5.8e-05  Score=75.41  Aligned_cols=81  Identities=14%  Similarity=0.083  Sum_probs=63.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhc-----C-------------------------------------CCcEEEEEECCHHHH
Q 025141          102 NPKTIFIMGGGEGSTAREILRH-----K-------------------------------------TVEKVVMCDIDEEVV  139 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~-----~-------------------------------------~~~~v~~VEid~~vi  139 (257)
                      ....++|-+||+|+++.+++..     |                                     ...+++++|+|+.++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            3578999999999999887642     0                                     113699999999999


Q ss_pred             HHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCC
Q 025141          140 EFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLAD  185 (257)
Q Consensus       140 ~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~  185 (257)
                      +.|+++....+   ...+++++.+|+.+.-... .++||+|++|||-
T Consensus       270 ~~A~~N~~~~g---~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPY  313 (702)
T PRK11783        270 QAARKNARRAG---VAELITFEVKDVADLKNPLPKGPTGLVISNPPY  313 (702)
T ss_pred             HHHHHHHHHcC---CCcceEEEeCChhhcccccccCCCCEEEECCCC
Confidence            99999987654   2457999999998864322 2579999999874

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.99  E-value=0.00011  Score=62.88  Aligned_cols=132  Identities=20%  Similarity=0.245  Sum_probs=87.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHH----HHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CC
Q 025141          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEV----VEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KE  174 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~v----i~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~  174 (257)
                      +..+||-||.++|++..+++.. .+...|.+||.+|..    +.+|++          .+|+-=+.+||+.--+-.  -+
T Consensus        73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----------R~NIiPIl~DAr~P~~Y~~lv~  142 (229)
T PF01269_consen   73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----------RPNIIPILEDARHPEKYRMLVE  142 (229)
T ss_dssp             TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----------STTEEEEES-TTSGGGGTTTS-
T ss_pred             CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----------CCceeeeeccCCChHHhhcccc
Confidence            4579999999999999998885 235699999999955    445554          367777899998755432  36


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe--cCCCCC-CCChHHHHHHHHHHhhh-CCceEEEee
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ--AGPAGI-FSHTEVFSCIYNTLRQV-FKCGCCALF  250 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~--~~~~~~-~~~~~~~~~~~~~l~~~-F~~v~~~~~  250 (257)
                      ..|+|+.|...|.        ..+-+... ++.-||+||.+++-  ..+-++ ......+.+..+.|++. |.-......
T Consensus       143 ~VDvI~~DVaQp~--------Qa~I~~~N-a~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~L  213 (229)
T PF01269_consen  143 MVDVIFQDVAQPD--------QARIAALN-ARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITL  213 (229)
T ss_dssp             -EEEEEEE-SSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred             cccEEEecCCChH--------HHHHHHHH-HHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence            8999999987543        13345555 67799999977653  211111 12356888888999974 766555555


Q ss_pred             cC
Q 025141          251 SS  252 (257)
Q Consensus       251 ~~  252 (257)
                      ++
T Consensus       214 eP  215 (229)
T PF01269_consen  214 EP  215 (229)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.96  E-value=2.8e-05  Score=72.02  Aligned_cols=104  Identities=29%  Similarity=0.346  Sum_probs=78.1

Q ss_pred             CCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +-++||.=+|+|.=+...++. ++..+|++-|+||+.++..++++.+++-  .+.++++.+.||...+....++||+|=+
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl  127 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL  127 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence            458999888999866555554 6678999999999999999999988752  2338999999999999766789999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+|.    .|      ..|+.. +-+.++.||++.+.+
T Consensus       128 DPfG----Sp------~pflds-A~~~v~~gGll~vTa  154 (377)
T PF02005_consen  128 DPFG----SP------APFLDS-ALQAVKDGGLLCVTA  154 (377)
T ss_dssp             --SS------------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CCCC----Cc------cHhHHH-HHHHhhcCCEEEEec
Confidence            9984    23      367787 678999999998754

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.94  E-value=1.5e-05  Score=63.58  Aligned_cols=92  Identities=17%  Similarity=0.081  Sum_probs=63.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      -+++++++||||.|.+...... ++...|.++||||+.+++++++..-..     -++.+...|..+.. ...+.||..+
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdildle-~~~g~fDtav  119 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDILDLE-LKGGIFDTAV  119 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeeccchh-ccCCeEeeEE
Confidence            3679999999999999866555 566899999999999999999865321     12245555533322 2348899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHH
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEF  203 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~  203 (257)
                      +|++-+..    ..-..-+|...
T Consensus       120 iNppFGTk----~~~aDm~fv~~  138 (185)
T KOG3420|consen  120 INPPFGTK----KKGADMEFVSA  138 (185)
T ss_pred             ecCCCCcc----cccccHHHHHH
Confidence            99875331    12234566665

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.93  E-value=2.4e-05  Score=68.97  Aligned_cols=75  Identities=24%  Similarity=0.428  Sum_probs=60.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CCceeEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~~fDvI  179 (257)
                      +...||+||.|.|.++++++++.  .++++||+|+...+..++.+.      .+++++++.+|+.++-...  ..+...|
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~v  101 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDLLKNQPLLV  101 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGHCSSSEEEE
T ss_pred             CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHhhcCCceEE
Confidence            56899999999999999999975  799999999999999998765      3589999999998763222  2356688


Q ss_pred             EEcCC
Q 025141          180 IGDLA  184 (257)
Q Consensus       180 i~D~~  184 (257)
                      +.+.+
T Consensus       102 v~NlP  106 (262)
T PF00398_consen  102 VGNLP  106 (262)
T ss_dssp             EEEET
T ss_pred             EEEec
Confidence            88765

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.90  E-value=1.3e-05  Score=66.72  Aligned_cols=101  Identities=24%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~  183 (257)
                      .-+.++|.|+|-++..+++.  ..+|.++|.||...+.|++++..++    +.+++++.+||+.|=-   +.-|+|++..
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g----~~n~evv~gDA~~y~f---e~ADvvicEm  104 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG----DVNWEVVVGDARDYDF---ENADVVICEM  104 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC----CcceEEEecccccccc---cccceeHHHH
Confidence            57999999999999887775  5799999999999999999987763    6799999999998832   5679999876


Q ss_pred             CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      -|.....  ..  ....+.. +.+-|+.++.++-+
T Consensus       105 lDTaLi~--E~--qVpV~n~-vleFLr~d~tiiPq  134 (252)
T COG4076         105 LDTALIE--EK--QVPVINA-VLEFLRYDPTIIPQ  134 (252)
T ss_pred             hhHHhhc--cc--ccHHHHH-HHHHhhcCCccccH
Confidence            6421100  00  1244555 45577888877743

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=8.4e-05  Score=62.93  Aligned_cols=127  Identities=20%  Similarity=0.236  Sum_probs=83.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-----HHhc-C-
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-----ELES-R-  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~-----~l~~-~-  172 (257)
                      .+...|+|||+.-|+.++.+++..+ ...|++||++|.-               .-+.|.++.+|.+.     -+.. . 
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l~  108 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEALG  108 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence            4568999999999999999888633 2359999998754               23457777776533     2322 2 


Q ss_pred             CCceeEEEEcCCCCCCCCc-ccCCch----HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025141          173 KESYDVIIGDLADPIEGGP-CYKLYT----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC  247 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p-~~~L~t----~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  247 (257)
                      ..+.|+|++|+........ ..+..+    .-.+.. +.+.|+|+|.+++..      .+.+....+++.+++.|..|..
T Consensus       109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~-a~~vL~~~G~fv~K~------fqg~~~~~~l~~~~~~F~~v~~  181 (205)
T COG0293         109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEF-ALEVLKPGGSFVAKV------FQGEDFEDLLKALRRLFRKVKI  181 (205)
T ss_pred             CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHH-HHHeeCCCCeEEEEE------EeCCCHHHHHHHHHHhhceeEE
Confidence            2457999999874322111 011111    123333 468999999999753      2334467888999999998886


Q ss_pred             Ee
Q 025141          248 AL  249 (257)
Q Consensus       248 ~~  249 (257)
                      ..
T Consensus       182 ~K  183 (205)
T COG0293         182 FK  183 (205)
T ss_pred             ec
Confidence            54

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.85  E-value=9.4e-05  Score=63.97  Aligned_cols=40  Identities=15%  Similarity=0.177  Sum_probs=34.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHH
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEF  141 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~  141 (257)
                      .+.+.|||+|||+|.++..+++. +..+|++||+++.++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence            35678999999999999999996 56799999999976654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=0.00012  Score=66.70  Aligned_cols=102  Identities=25%  Similarity=0.315  Sum_probs=82.6

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      +++|||-=+|+|.=+...+...+..+|++-||+|+.+++.++++..|.    .....+++.||-..+.+....||+|=+|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~----~~~~~v~n~DAN~lm~~~~~~fd~IDiD  128 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS----GEDAEVINKDANALLHELHRAFDVIDID  128 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC----cccceeecchHHHHHHhcCCCccEEecC
Confidence            889999999999977665554444489999999999999999998772    3455667799999999878999999999


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|.    .|      ..|+.. +.+.++.+|++.+..
T Consensus       129 PFG----SP------aPFlDa-A~~s~~~~G~l~vTA  154 (380)
T COG1867         129 PFG----SP------APFLDA-ALRSVRRGGLLCVTA  154 (380)
T ss_pred             CCC----CC------chHHHH-HHHHhhcCCEEEEEe
Confidence            984    23      256777 678888899998764

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.80  E-value=0.00014  Score=64.98  Aligned_cols=137  Identities=14%  Similarity=0.071  Sum_probs=94.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvI  179 (257)
                      +..+|||++++.|+=+..++... ....|+++|+++.=+...++++...+    ..++.+...|++++.... ...||.|
T Consensus        85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g----~~~v~~~~~D~~~~~~~~~~~~fd~V  160 (283)
T PF01189_consen   85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG----VFNVIVINADARKLDPKKPESKFDRV  160 (283)
T ss_dssp             TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-----SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred             ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC----CceEEEEeeccccccccccccccchh
Confidence            45789999999999877777753 24699999999999999998876442    457888889999986543 3469999


Q ss_pred             EEcCCCCCC----CCccc------------CCchHHHHHHHHcCcC----CCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025141          180 IGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRL----NPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (257)
Q Consensus       180 i~D~~~~~~----~~p~~------------~L~t~ef~~~~~~~~L----~pgGil~~~~~~~~~~~~~~~~~~~~~~l~  239 (257)
                      ++|++-...    ..|..            .-...+.++. +.+.+    +|||+++--+.+-   . ++..+..++.+-
T Consensus       161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~~~~~~k~gG~lvYsTCS~---~-~eENE~vV~~fl  235 (283)
T PF01189_consen  161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDN-AAKLLNIDFKPGGRLVYSTCSL---S-PEENEEVVEKFL  235 (283)
T ss_dssp             EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHH-HHHCEHHHBEEEEEEEEEESHH---H-GGGTHHHHHHHH
T ss_pred             hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHH-HHHhhcccccCCCeEEEEeccH---H-HHHHHHHHHHHH
Confidence            999983221    12210            0113577777 68899    9999998655332   2 333445555554


Q ss_pred             hhCCceEE
Q 025141          240 QVFKCGCC  247 (257)
Q Consensus       240 ~~F~~v~~  247 (257)
                      +.+|....
T Consensus       236 ~~~~~~~l  243 (283)
T PF01189_consen  236 KRHPDFEL  243 (283)
T ss_dssp             HHSTSEEE
T ss_pred             HhCCCcEE
Confidence            45665543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK04148 hypothetical protein; Provisional

Probab=97.79  E-value=6.7e-05  Score=59.46  Aligned_cols=71  Identities=21%  Similarity=0.164  Sum_probs=51.9

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+++++|+||+|.|. ++..+.+. + .+|+++|++|..++.+++.           .++++.+|.++-=-+.-+.+|+|
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~-G-~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~y~~a~li   81 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKES-G-FDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEIYKNAKLI   81 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHHHhcCCEE
Confidence            346789999999996 77777764 4 5999999999999988764           35677777654322223678999


Q ss_pred             EEcCC
Q 025141          180 IGDLA  184 (257)
Q Consensus       180 i~D~~  184 (257)
                      ..--+
T Consensus        82 ysirp   86 (134)
T PRK04148         82 YSIRP   86 (134)
T ss_pred             EEeCC
Confidence            87533

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.74  E-value=0.00043  Score=59.90  Aligned_cols=103  Identities=22%  Similarity=0.246  Sum_probs=58.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi  180 (257)
                      ..|+||.||=.+-.....++...+ ++|+++|||+.+++..++.....+     -+++.++.|.|+-+.. -.++||+++
T Consensus        44 ~gk~il~lGDDDLtSlA~al~~~~-~~I~VvDiDeRll~fI~~~a~~~g-----l~i~~~~~DlR~~LP~~~~~~fD~f~  117 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSLALALTGLP-KRITVVDIDERLLDFINRVAEEEG-----LPIEAVHYDLRDPLPEELRGKFDVFF  117 (243)
T ss_dssp             TT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE---TTS---TTTSS-BSEEE
T ss_pred             cCCEEEEEcCCcHHHHHHHhhCCC-CeEEEEEcCHHHHHHHHHHHHHcC-----CceEEEEecccccCCHHHhcCCCEEE
Confidence            579999999888776555554443 799999999999999998876432     2499999999998865 358999999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCc-EEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG-il~~~  218 (257)
                      .||+..    +..   -.-|+.. .-+.|+..| ...+.
T Consensus       118 TDPPyT----~~G---~~LFlsR-gi~~Lk~~g~~gy~~  148 (243)
T PF01861_consen  118 TDPPYT----PEG---LKLFLSR-GIEALKGEGCAGYFG  148 (243)
T ss_dssp             E---SS----HHH---HHHHHHH-HHHTB-STT-EEEEE
T ss_pred             eCCCCC----HHH---HHHHHHH-HHHHhCCCCceEEEE
Confidence            998731    110   1235555 456777766 43333

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.0012  Score=55.69  Aligned_cols=137  Identities=17%  Similarity=0.207  Sum_probs=89.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDv  178 (257)
                      .+..+||-||..+|++..++..-.+...|.+||.+|++.+-.-   ....   ..+|+-=+.+||+.--+-  .-+..|+
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl---~~a~---~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv  148 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL---DVAE---KRPNIIPILEDARKPEKYRHLVEKVDV  148 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH---HHHH---hCCCceeeecccCCcHHhhhhcccccE
Confidence            4568999999999999999998766678999999998754322   2111   235666677888653221  2367999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCc--EEEEecCCCCCC-CChHHHHHHHHHHhhh-CCceEEEeecC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIF-SHTEVFSCIYNTLRQV-FKCGCCALFSS  252 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG--il~~~~~~~~~~-~~~~~~~~~~~~l~~~-F~~v~~~~~~~  252 (257)
                      |+.|...|..        +.-+... +..-|+++|  ++++...+-.+- ...+.+++..+.|++. |.-......++
T Consensus       149 iy~DVAQp~Q--------a~I~~~N-a~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LeP  217 (231)
T COG1889         149 IYQDVAQPNQ--------AEILADN-AEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEP  217 (231)
T ss_pred             EEEecCCchH--------HHHHHHH-HHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCC
Confidence            9999876541        2334455 688999999  555554332211 2345777777777765 55554444433

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.62  E-value=0.00077  Score=59.87  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=85.9

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCC--CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhcCCCc
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKES  175 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~~~~~  175 (257)
                      ...|-+||+|.||.|-....++...+  ..+|...|.+|.-++..++...-.+   -..-+++..+||++.  +.....+
T Consensus       133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g---L~~i~~f~~~dAfd~~~l~~l~p~  209 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG---LEDIARFEQGDAFDRDSLAALDPA  209 (311)
T ss_pred             cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC---CccceEEEecCCCCHhHhhccCCC
Confidence            45788999999999998887776433  3689999999999999998876432   233559999999886  4444567


Q ss_pred             eeEEEEcC-CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025141          176 YDVIIGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (257)
Q Consensus       176 fDvIi~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~  240 (257)
                      .+++++.- ++-.   |...+. ..-+.- +.++|.|||.++. ++.|  |+ + .++-|.+.|..
T Consensus       210 P~l~iVsGL~ElF---~Dn~lv-~~sl~g-l~~al~pgG~lIy-TgQP--wH-P-Qle~IAr~Lts  265 (311)
T PF12147_consen  210 PTLAIVSGLYELF---PDNDLV-RRSLAG-LARALEPGGYLIY-TGQP--WH-P-QLEMIARVLTS  265 (311)
T ss_pred             CCEEEEecchhhC---CcHHHH-HHHHHH-HHHHhCCCcEEEE-cCCC--CC-c-chHHHHHHHhc
Confidence            88877653 3211   111222 234555 6889999998874 4555  43 2 23444455543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.58  E-value=0.00053  Score=62.36  Aligned_cols=71  Identities=13%  Similarity=0.153  Sum_probs=56.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.+++||||++.|+.+..+++. + .+|++||..+..-.+           ..+++|+.+.+|+..+... .+.+|+++
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r-G-~~V~AVD~g~l~~~L-----------~~~~~V~h~~~d~fr~~p~-~~~vDwvV  275 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR-G-MFVTAVDNGPMAQSL-----------MDTGQVEHLRADGFKFRPP-RKNVDWLV  275 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc-C-CEEEEEechhcCHhh-----------hCCCCEEEEeccCcccCCC-CCCCCEEE
Confidence            35689999999999999999996 4 499999965422111           2579999999999998643 57899999


Q ss_pred             EcCCC
Q 025141          181 GDLAD  185 (257)
Q Consensus       181 ~D~~~  185 (257)
                      +|...
T Consensus       276 cDmve  280 (357)
T PRK11760        276 CDMVE  280 (357)
T ss_pred             Eeccc
Confidence            99874

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.57  E-value=0.00067  Score=57.34  Aligned_cols=111  Identities=14%  Similarity=0.144  Sum_probs=61.7

Q ss_pred             CCCeEEEEeccchHH----HHHHHh---c-CC-CcEEEEEECCHHHHHHHHhh------------------h-hhccCCC
Q 025141          102 NPKTIFIMGGGEGST----AREILR---H-KT-VEKVVMCDIDEEVVEFCKSY------------------L-VVNKEAF  153 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~----~~~l~~---~-~~-~~~v~~VEid~~vi~~a~~~------------------~-~~~~~~~  153 (257)
                      ++-+|+-.||++|-=    +..+..   . .+ .-+|.+.|||+.+++.|++-                  | ...++.+
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            467999999999973    222222   1 11 24899999999999999972                  2 1111111


Q ss_pred             -----CCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          154 -----SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       154 -----~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                           -..++++..-|..+ .....++||+|++--.--. ..+   -.....++. +.+.|+|||.|++-
T Consensus       111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIY-F~~---~~~~~vl~~-l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIY-FDP---ETQQRVLRR-LHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGG-S-H---HHHHHHHHH-HGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEE-eCH---HHHHHHHHH-HHHHcCCCCEEEEe
Confidence                 01577888888776 2233578999998632100 011   113567787 79999999999974

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.50  E-value=0.00025  Score=64.23  Aligned_cols=96  Identities=20%  Similarity=0.236  Sum_probs=72.2

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      -+..+|+|+|.|.+++.++.+++  +|.+++.|..-+..++.++.        |.++.+.+|+++-    ..+-|+|++-
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~----~P~~daI~mk  243 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQD----TPKGDAIWMK  243 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceeccccccc----CCCcCeEEEE
Confidence            47899999999999999999764  69999999888887777653        2478888997664    2445799887


Q ss_pred             CC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          183 LA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       183 ~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .- .+|.+.-     -..|++. +++.|+|+|.+++-
T Consensus       244 WiLhdwtDed-----cvkiLkn-C~~sL~~~GkIiv~  274 (342)
T KOG3178|consen  244 WILHDWTDED-----CVKILKN-CKKSLPPGGKIIVV  274 (342)
T ss_pred             eecccCChHH-----HHHHHHH-HHHhCCCCCEEEEE
Confidence            54 2332221     2589999 59999999987764

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.49  E-value=0.0019  Score=59.48  Aligned_cols=110  Identities=22%  Similarity=0.162  Sum_probs=81.0

Q ss_pred             CCeEEEEeccchHHHHHHHhcCC-----C---------------------------c-------EEEEEECCHHHHHHHH
Q 025141          103 PKTIFIMGGGEGSTAREILRHKT-----V---------------------------E-------KVVMCDIDEEVVEFCK  143 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~-----~---------------------------~-------~v~~VEid~~vi~~a~  143 (257)
                      .+.++|-=||+|+++.+++....     .                           +       .+.++|+|+.+++.|+
T Consensus       192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak  271 (381)
T COG0116         192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK  271 (381)
T ss_pred             CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence            36899999999999988876421     0                           1       3779999999999999


Q ss_pred             hhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcc---cCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          144 SYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPC---YKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       144 ~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~---~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .+....+   ....+++..+|+..+-.. .+.+|+||+|||-+...+..   ..|| ++|.+. +++.++--+.+++-
T Consensus       272 ~NA~~AG---v~d~I~f~~~d~~~l~~~-~~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~-lk~~~~~ws~~v~t  343 (381)
T COG0116         272 ANARAAG---VGDLIEFKQADATDLKEP-LEEYGVVISNPPYGERLGSEALVAKLY-REFGRT-LKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHhcC---CCceEEEEEcchhhCCCC-CCcCCEEEeCCCcchhcCChhhHHHHH-HHHHHH-HHHHhcCCceEEEE
Confidence            9986543   457899999998776332 27899999999844322211   1244 467777 68888887777764

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.48  E-value=0.0004  Score=61.42  Aligned_cols=111  Identities=19%  Similarity=0.190  Sum_probs=77.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh---ccC---------------------------
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV---NKE---------------------------  151 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~---~~~---------------------------  151 (257)
                      .+.+||+-|||.|.++.++++. + -.+.+.|.+--|+-..+--+..   .+.                           
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~-G-~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL-G-YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc-c-ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            3579999999999999999997 4 4899999998885443321110   000                           


Q ss_pred             ------CCCCCCeEEEEcchHHHHhcC--CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          152 ------AFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       152 ------~~~~~rv~i~~~Da~~~l~~~--~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                            .....++++..||..++-...  .++||+|+..-|-..  .  ..+  .++++. ++++|||||+ .+|.||-
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A--~Ni--~~Yi~t-I~~lLkpgG~-WIN~GPL  204 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--A--ENI--IEYIET-IEHLLKPGGY-WINFGPL  204 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--h--HHH--HHHHHH-HHHHhccCCE-EEecCCc
Confidence                  012357889999988876554  478999998765211  1  122  488888 7999999995 4588754

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.46  E-value=0.00032  Score=59.82  Aligned_cols=78  Identities=18%  Similarity=0.153  Sum_probs=59.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~fDv  178 (257)
                      .+..|+|.-||.|+.+.+.+...  ..|.++|+||.-+..||++++.-+   -..|++++.||..+..+..   ...+|+
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYG---I~~rItFI~GD~ld~~~~lq~~K~~~~~  168 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYG---VPDRITFICGDFLDLASKLKADKIKYDC  168 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeec---CCceeEEEechHHHHHHHHhhhhheeee
Confidence            56678887777777666655543  479999999999999999987543   2349999999998876543   355888


Q ss_pred             EEEcCC
Q 025141          179 IIGDLA  184 (257)
Q Consensus       179 Ii~D~~  184 (257)
                      |+..++
T Consensus       169 vf~spp  174 (263)
T KOG2730|consen  169 VFLSPP  174 (263)
T ss_pred             eecCCC
Confidence            887765

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.39  E-value=0.0013  Score=55.73  Aligned_cols=134  Identities=16%  Similarity=0.116  Sum_probs=81.6

Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-HHHHh---cCCCceeEEE
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELE---SRKESYDVII  180 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da-~~~l~---~~~~~fDvIi  180 (257)
                      +||+||+|+|--+.+++++.+..+-.--|.++....-.+.+....+...-.+-+.+=..+. ..+..   ...+.||.|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            5999999999999999987665566677999988766666653221100112233322221 22211   1346899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC--CCCCChHHHHHHHHHHhhhCCc
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA--GIFSHTEVFSCIYNTLRQVFKC  244 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~--~~~~~~~~~~~~~~~l~~~F~~  244 (257)
                      +--.-+.  .| + -.+..+|+. +.+.|++||++++..--.  + ....+...++-..||+.-|.
T Consensus       108 ~~N~lHI--~p-~-~~~~~lf~~-a~~~L~~gG~L~~YGPF~~~G-~~ts~SN~~FD~sLr~rdp~  167 (204)
T PF06080_consen  108 CINMLHI--SP-W-SAVEGLFAG-AARLLKPGGLLFLYGPFNRDG-KFTSESNAAFDASLRSRDPE  167 (204)
T ss_pred             ehhHHHh--cC-H-HHHHHHHHH-HHHhCCCCCEEEEeCCcccCC-EeCCcHHHHHHHHHhcCCCC
Confidence            8654332  22 1 124678888 799999999999864100  0 11345566666777766543

The function of this family is unknown.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.38  E-value=0.0019  Score=55.02  Aligned_cols=100  Identities=18%  Similarity=0.193  Sum_probs=71.6

Q ss_pred             EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025141          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       106 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~  185 (257)
                      |.||||--|.++.+|++.....+++++|+++.-++.|+++....+   ...+++++.+|+.+-+.. .+..|.|++..-.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~---l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMG   76 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG---LEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMG   76 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGGGG--G-GG---EEEEEEE-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CcccEEEEECCcccccCC-CCCCCEEEEecCC
Confidence            689999999999999998767789999999999999999987543   356999999999998754 2336998886331


Q ss_pred             CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                              -....++++. ....++..-.++++
T Consensus        77 --------G~lI~~ILe~-~~~~~~~~~~lILq  100 (205)
T PF04816_consen   77 --------GELIIEILEA-GPEKLSSAKRLILQ  100 (205)
T ss_dssp             --------HHHHHHHHHH-TGGGGTT--EEEEE
T ss_pred             --------HHHHHHHHHh-hHHHhccCCeEEEe
Confidence                    1235677777 56777766678886

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.38  E-value=0.00033  Score=66.01  Aligned_cols=105  Identities=17%  Similarity=0.197  Sum_probs=84.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC---Cce
Q 025141          101 PNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK---ESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~---~~f  176 (257)
                      .++-+||+.=+++|.-+...++ .+++.+|++-|.+++.++..+++..++.   .+..++..++||...+-...   ..|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~~F  184 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAKFF  184 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhcccccccc
Confidence            4567899977778876544444 5778899999999999999999998774   46788999999998876655   889


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+|=+|++.    .|      ..|+.. +-+.++.||++++-+
T Consensus       185 DvIDLDPyG----s~------s~FLDs-Avqav~~gGLL~vT~  216 (525)
T KOG1253|consen  185 DVIDLDPYG----SP------SPFLDS-AVQAVRDGGLLCVTC  216 (525)
T ss_pred             ceEecCCCC----Cc------cHHHHH-HHHHhhcCCEEEEEe
Confidence            999999984    22      257777 788999999998754

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.35  E-value=0.0018  Score=55.05  Aligned_cols=108  Identities=16%  Similarity=0.169  Sum_probs=60.4

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-c----cCCCCCCCeEEEEcchHHH--HhcCCC
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-N----KEAFSDPRLELVINDARAE--LESRKE  174 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~----~~~~~~~rv~i~~~Da~~~--l~~~~~  174 (257)
                      +....+|||+|.|-....++...+..+..+||+.+...+.|++.... .    .-+....+++++.+|..+.  ....-.
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s  121 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS  121 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence            45678999999999987776655677899999999999988764321 0    0112356889999997542  221114


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      .-|+|+++..--   .+  .|  ...+.. ....||+|-.++.
T Consensus       122 ~AdvVf~Nn~~F---~~--~l--~~~L~~-~~~~lk~G~~IIs  156 (205)
T PF08123_consen  122 DADVVFVNNTCF---DP--DL--NLALAE-LLLELKPGARIIS  156 (205)
T ss_dssp             C-SEEEE--TTT----H--HH--HHHHHH-HHTTS-TT-EEEE
T ss_pred             CCCEEEEecccc---CH--HH--HHHHHH-HHhcCCCCCEEEE
Confidence            579999986421   11  11  223344 3567888887765

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.34  E-value=0.00027  Score=61.02  Aligned_cols=106  Identities=25%  Similarity=0.375  Sum_probs=69.0

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-Hhc--CCCcee
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LES--RKESYD  177 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-l~~--~~~~fD  177 (257)
                      +.+||+||||.|.+..-+++..+.  -+|.++|.+|..++..+++-...     ..++.-.+-|...- +..  ..+.+|
T Consensus        72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~-----e~~~~afv~Dlt~~~~~~~~~~~svD  146 (264)
T KOG2361|consen   72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD-----ESRVEAFVWDLTSPSLKEPPEEGSVD  146 (264)
T ss_pred             hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc-----hhhhcccceeccchhccCCCCcCccc
Confidence            347999999999999999986544  68999999999999999875433     12333222222111 222  236788


Q ss_pred             EEEEcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|.+--. +..  .| ..  -...+.. +.++|||||.+++..
T Consensus       147 ~it~IFvLSAi--~p-ek--~~~a~~n-l~~llKPGG~llfrD  183 (264)
T KOG2361|consen  147 IITLIFVLSAI--HP-EK--MQSVIKN-LRTLLKPGGSLLFRD  183 (264)
T ss_pred             eEEEEEEEecc--Ch-HH--HHHHHHH-HHHHhCCCcEEEEee
Confidence            7665422 111  22 11  1245666 689999999999864

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.28  E-value=0.0034  Score=58.25  Aligned_cols=141  Identities=14%  Similarity=0.042  Sum_probs=98.0

Q ss_pred             CCC-CCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCce
Q 025141          100 HPN-PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESY  176 (257)
Q Consensus       100 ~~~-~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~f  176 (257)
                      .|. ..||||+++..|+=+.+++.. .....|.+-|.+..-++..+.++...+    -.+..+.+.|+++|-+. ...+|
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~~~f  313 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFPGSF  313 (460)
T ss_pred             CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccCccc
Confidence            444 589999999999866666553 234589999999999999998876543    35677888999887533 33489


Q ss_pred             eEEEEcCCCCCC---CCc--------------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025141          177 DVIIGDLADPIE---GGP--------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (257)
Q Consensus       177 DvIi~D~~~~~~---~~p--------------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~  239 (257)
                      |-|++|++-...   ..+              ..+| .++.+.. +-+.+++||+|+-.+.+-    ..+.-+..++.+-
T Consensus       314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~L-Qr~Llls-Ai~lv~~GGvLVYSTCSI----~~~ENE~vV~yaL  387 (460)
T KOG1122|consen  314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHL-QRELLLS-AIDLVKAGGVLVYSTCSI----TVEENEAVVDYAL  387 (460)
T ss_pred             ceeeecCCCCCCcccccccccccchhHHHHHHhHHH-HHHHHHH-HHhhccCCcEEEEEeeec----chhhhHHHHHHHH
Confidence            999999983221   001              0122 2455555 578999999998765432    3455678888888


Q ss_pred             hhCCceEEEee
Q 025141          240 QVFKCGCCALF  250 (257)
Q Consensus       240 ~~F~~v~~~~~  250 (257)
                      +.||+++.-..
T Consensus       388 ~K~p~~kL~p~  398 (460)
T KOG1122|consen  388 KKRPEVKLVPT  398 (460)
T ss_pred             HhCCceEeccc
Confidence            88888876443

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.28  E-value=0.00092  Score=52.73  Aligned_cols=55  Identities=16%  Similarity=0.215  Sum_probs=45.2

Q ss_pred             EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 025141          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND  164 (257)
Q Consensus       106 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D  164 (257)
                      +||||||.|..+..+++..+..+|+++|.+|...+.+++++..++    -++++++...
T Consensus         2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~----~~~v~~~~~a   56 (143)
T TIGR01444         2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN----LPNVVLLNAA   56 (143)
T ss_pred             EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEEee
Confidence            799999999999998887554589999999999999999987552    2457776654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.26  E-value=0.0028  Score=54.23  Aligned_cols=99  Identities=19%  Similarity=0.280  Sum_probs=69.1

Q ss_pred             CCeEEEEeccchHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          103 PKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +++++|||.|.|.=+.-++ ..+. .+||.+|....=+...++-..-    +.-++++++++.+.++-.+... ||+|.+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~-~~vtLles~~Kk~~FL~~~~~e----L~L~nv~i~~~RaE~~~~~~~~-~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPD-LKVTLLESLGKKIAFLREVKKE----LGLENVEIVHGRAEEFGQEKKQ-YDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccC-CcEEEEccCchHHHHHHHHHHH----hCCCCeEEehhhHhhccccccc-CcEEEe
Confidence            6899999999997544433 2344 5699999998877666654331    2357899999999888543223 999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      -+..+.          .....- +...|++||.++..
T Consensus       142 RAva~L----------~~l~e~-~~pllk~~g~~~~~  167 (215)
T COG0357         142 RAVASL----------NVLLEL-CLPLLKVGGGFLAY  167 (215)
T ss_pred             ehccch----------HHHHHH-HHHhcccCCcchhh
Confidence            876432          133444 57899998887653

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=97.25  E-value=0.001  Score=63.17  Aligned_cols=105  Identities=18%  Similarity=0.324  Sum_probs=76.3

Q ss_pred             CeEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHh-hhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          104 KTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKS-YLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~-~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ..|+++|+|-|=+....++.    ..--++.+||.+|..+-..+. ++..     =+.+|+++..|.|.|- .+.++.|+
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~-----W~~~Vtii~~DMR~w~-ap~eq~DI  442 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC-----WDNRVTIISSDMRKWN-APREQADI  442 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh-----hcCeeEEEeccccccC-Cchhhccc
Confidence            45778999999987766652    122478999999999877665 2221     2579999999999996 22488999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |++.+-...  +  ..-.+.|-+.- +-+.|||+|+.+-..
T Consensus       443 ~VSELLGSF--G--DNELSPECLDG-~q~fLkpdgIsIP~s  478 (649)
T KOG0822|consen  443 IVSELLGSF--G--DNELSPECLDG-AQKFLKPDGISIPSS  478 (649)
T ss_pred             hHHHhhccc--c--CccCCHHHHHH-HHhhcCCCceEccch
Confidence            999876433  1  12236777787 788999999988654

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.13  E-value=0.0051  Score=52.52  Aligned_cols=105  Identities=16%  Similarity=0.152  Sum_probs=83.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +...++.||||--+.++.++.+..+...++++|+++-.++.|.+++..++   ..++++++.+|+..-++. ++..|+|+
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dgl~~l~~-~d~~d~iv   90 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDGLAVLEL-EDEIDVIV   90 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCCccccCc-cCCcCEEE
Confidence            44556999999999999999997777899999999999999999998654   568999999999776643 45799998


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +..-.        ...-.+++++ -++.|+.--.+++|
T Consensus        91 IAGMG--------G~lI~~ILee-~~~~l~~~~rlILQ  119 (226)
T COG2384          91 IAGMG--------GTLIREILEE-GKEKLKGVERLILQ  119 (226)
T ss_pred             EeCCc--------HHHHHHHHHH-hhhhhcCcceEEEC
Confidence            87432        1234677777 67788755567765

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.12  E-value=0.0014  Score=58.66  Aligned_cols=111  Identities=17%  Similarity=0.176  Sum_probs=66.4

Q ss_pred             CCCeEEEEeccchHH----HHHHHhc----CCCcEEEEEECCHHHHHHHHhhh------------------hhc-c--CC
Q 025141          102 NPKTIFIMGGGEGST----AREILRH----KTVEKVVMCDIDEEVVEFCKSYL------------------VVN-K--EA  152 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~----~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~------------------~~~-~--~~  152 (257)
                      .+-+|...||++|-=    +..+...    ...-+|++.|||+.+++.|++-.                  ... +  +.
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            346999999999973    2222221    11247999999999999999741                  100 0  00


Q ss_pred             -C-----CCCCeEEEEcchHHHHhcCCCceeEEEEcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          153 -F-----SDPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       153 -~-----~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                       +     -..+|++...|..+.--...++||+|++--. -..  .+   -.....++. +.+.|+|||++++-
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF--~~---~~~~~vl~~-l~~~L~pgG~L~lG  261 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF--DK---TTQERILRR-FVPLLKPDGLLFAG  261 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC--CH---HHHHHHHHH-HHHHhCCCcEEEEe
Confidence             0     0135556655554310011368999998421 111  11   123567788 79999999998874

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.02  E-value=0.001  Score=63.00  Aligned_cols=80  Identities=23%  Similarity=0.269  Sum_probs=63.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC----Cce
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK----ESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~----~~f  176 (257)
                      +..+-+||+.||+|.+...++++  +.+|.+||++|+.++-|+++...|+    -.+.+++.+-|.+.+....    +.=
T Consensus       382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ng----isNa~Fi~gqaE~~~~sl~~~~~~~~  455 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQING----ISNATFIVGQAEDLFPSLLTPCCDSE  455 (534)
T ss_pred             CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcC----ccceeeeecchhhccchhcccCCCCC
Confidence            45588999999999999999884  5799999999999999999987763    4688999997777654422    233


Q ss_pred             e-EEEEcCCCC
Q 025141          177 D-VIIGDLADP  186 (257)
Q Consensus       177 D-vIi~D~~~~  186 (257)
                      + ++++|++..
T Consensus       456 ~~v~iiDPpR~  466 (534)
T KOG2187|consen  456 TLVAIIDPPRK  466 (534)
T ss_pred             ceEEEECCCcc
Confidence            5 788898753

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.00  E-value=0.011  Score=52.50  Aligned_cols=121  Identities=16%  Similarity=0.211  Sum_probs=78.8

Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcC
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL  183 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~  183 (257)
                      +|+++.||.|++...+.+. +...+.++|+|+..++..+++++..          ++.+|..++.... ...+|+|+.++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhcCCCCCEEEeCC
Confidence            6899999999998777764 5667899999999999999887421          4566766655433 45799999998


Q ss_pred             CCC-CC--------CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCC--ChHHHHHHHHHHhhh
Q 025141          184 ADP-IE--------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQV  241 (257)
Q Consensus       184 ~~~-~~--------~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~--~~~~~~~~~~~l~~~  241 (257)
                      +-. .+        ..+...| -.++++. + +.++|.=+++=|.  ++...  ....+..+.+.|++.
T Consensus        71 PCq~fS~ag~~~~~~d~r~~L-~~~~~~~-i-~~~~P~~~v~ENV--~g~~~~~~~~~~~~i~~~l~~~  134 (275)
T cd00315          71 PCQPFSIAGKRKGFEDTRGTL-FFEIIRI-L-KEKKPKYFLLENV--KGLLTHDNGNTLKVILNTLEEL  134 (275)
T ss_pred             CChhhhHHhhcCCCCCchHHH-HHHHHHH-H-HhcCCCEEEEEcC--cchhccCchHHHHHHHHHHHhC
Confidence            721 11        0111122 2466664 3 4668885555454  22111  245677777777764

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.97  E-value=0.0061  Score=54.14  Aligned_cols=46  Identities=20%  Similarity=0.385  Sum_probs=38.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhh
Q 025141          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLV  147 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~  147 (257)
                      .|++|||+|+|.|+.+..+... +...++++||.++.++++++.-+.
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~   79 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR   79 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence            5889999999999877655543 345789999999999999998764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.96  E-value=0.0024  Score=60.55  Aligned_cols=129  Identities=19%  Similarity=0.215  Sum_probs=67.5

Q ss_pred             EEcCcccccCCCchhHHHHHHH-HHhh-cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEE--EECCHHHHHHHHhh-hh
Q 025141           73 VIDGKLQSAEVDEFIYHESLVH-PALL-HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVM--CDIDEEVVEFCKSY-LV  147 (257)
Q Consensus        73 ~ldG~~~~~~~~~~~y~e~l~~-~~l~-~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~--VEid~~vi~~a~~~-~~  147 (257)
                      |-.|..|+.... ..|.+.+.. +++. ....-+.+||+|||.|+++..++.+ ++..+..  -|..+..++.|-+. ++
T Consensus        87 FPgggt~F~~Ga-~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleRGvp  164 (506)
T PF03141_consen   87 FPGGGTMFPHGA-DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALERGVP  164 (506)
T ss_pred             eCCCCccccCCH-HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhcCcc
Confidence            344445544322 246655543 2332 2233478999999999999999985 3332221  13444445554432 22


Q ss_pred             hccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          148 VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       148 ~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      ..-..+           +.+-|.-....||+|=+.-. .+|.  +...    -++-+ +.|+|+|||.++. +++|
T Consensus       165 a~~~~~-----------~s~rLPfp~~~fDmvHcsrc~i~W~--~~~g----~~l~e-vdRvLRpGGyfv~-S~pp  221 (506)
T PF03141_consen  165 AMIGVL-----------GSQRLPFPSNAFDMVHCSRCLIPWH--PNDG----FLLFE-VDRVLRPGGYFVL-SGPP  221 (506)
T ss_pred             hhhhhh-----------ccccccCCccchhhhhcccccccch--hccc----ceeeh-hhhhhccCceEEe-cCCc
Confidence            110000           11223334578998855433 2442  1111    13345 6899999999874 4555

; GO: 0008168 methyltransferase activity

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.93  E-value=0.002  Score=57.81  Aligned_cols=79  Identities=16%  Similarity=0.141  Sum_probs=47.6

Q ss_pred             CCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch----HHHHhcCCCcee
Q 025141          103 PKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA----RAELESRKESYD  177 (257)
Q Consensus       103 ~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da----~~~l~~~~~~fD  177 (257)
                      ..++||||+|.-.+ +.-..+..+ =++++.|||+..++.|+++...+..  ...+++++...-    +..+....++||
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~~~~e~~d  179 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYG-WSFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPDNIFDGIIQPNERFD  179 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCccccchhhhcccceee
Confidence            46899999998875 333334344 4899999999999999999876521  467898876532    222333457899


Q ss_pred             EEEEcCC
Q 025141          178 VIIGDLA  184 (257)
Q Consensus       178 vIi~D~~  184 (257)
                      +.++++|
T Consensus       180 ftmCNPP  186 (299)
T PF05971_consen  180 FTMCNPP  186 (299)
T ss_dssp             EEEE---
T ss_pred             EEecCCc
Confidence            9999987

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.92  E-value=0.03  Score=50.83  Aligned_cols=110  Identities=12%  Similarity=0.087  Sum_probs=71.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE--EEcchHHH---Hhc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAE---LES  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i--~~~Da~~~---l~~  171 (257)
                      +++..++++|||+|.=++.++..    ....+.+.|||+.+.++.+.+.+...    .-|.+++  +.+|..+-   +..
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~  150 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKR  150 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhccc
Confidence            45567999999999966555542    12357999999999999999887621    1266666  67766554   432


Q ss_pred             C--CCceeEEEEcCCC-CCCCCcccCCchHHHHHHHHcC-cCCCCcEEEEec
Q 025141          172 R--KESYDVIIGDLAD-PIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA  219 (257)
Q Consensus       172 ~--~~~fDvIi~D~~~-~~~~~p~~~L~t~ef~~~~~~~-~L~pgGil~~~~  219 (257)
                      .  .....+|+.=... ++ ..|   --...|++. +++ .|+|||.+++-.
T Consensus       151 ~~~~~~~r~~~flGSsiGN-f~~---~ea~~fL~~-~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       151 PENRSRPTTILWLGSSIGN-FSR---PEAAAFLAG-FLATALSPSDSFLIGL  197 (319)
T ss_pred             ccccCCccEEEEeCccccC-CCH---HHHHHHHHH-HHHhhCCCCCEEEEec
Confidence            1  2345665543321 22 112   224578898 788 999999988754

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.89  E-value=0.0045  Score=49.40  Aligned_cols=106  Identities=24%  Similarity=0.188  Sum_probs=64.6

Q ss_pred             EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC-ceeEEEEcCC-CCCCCC--cccCCchHHHHHH
Q 025141          128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLA-DPIEGG--PCYKLYTKSFYEF  203 (257)
Q Consensus       128 ~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~-~fDvIi~D~~-~~~~~~--p~~~L~t~ef~~~  203 (257)
                      +|.+.||.++.++.+++.+....   ...|++++...=.+..+..++ +.|+++.++- -|..+.  ....-.|...++.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~---~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~   77 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG---LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA   77 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC---CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence            58999999999999999886432   235899988664444333344 8999999973 333211  0011235678888


Q ss_pred             HHcCcCCCCcEEEEec--CCCCCCCChHHHHHHHHHHhh
Q 025141          204 VVKPRLNPEGIFVTQA--GPAGIFSHTEVFSCIYNTLRQ  240 (257)
Q Consensus       204 ~~~~~L~pgGil~~~~--~~~~~~~~~~~~~~~~~~l~~  240 (257)
                       +.+.|+|||++++-.  |++   ...+....+.+.+++
T Consensus        78 -al~lL~~gG~i~iv~Y~GH~---gG~eE~~av~~~~~~  112 (140)
T PF06962_consen   78 -ALELLKPGGIITIVVYPGHP---GGKEESEAVEEFLAS  112 (140)
T ss_dssp             -HHHHEEEEEEEEEEE--STC---HHHHHHHHHHHHHHT
T ss_pred             -HHHhhccCCEEEEEEeCCCC---CCHHHHHHHHHHHHh
Confidence             689999999988765  333   123344455555544

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.86  E-value=0.00099  Score=57.66  Aligned_cols=81  Identities=21%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc--cCCC---CCCCeEEEEcchHHHHhcCCCceeE
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--KEAF---SDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~--~~~~---~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+|||.=+|-|.-+..++.. + ++|+++|-+|.+..+.+.-+...  ....   .-.|++++++|+.+|++.....||+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~-G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV  154 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL-G-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV  154 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH-T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred             CEEEECCCcchHHHHHHHcc-C-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence            48999888888877776654 4 58999999999998887654311  1100   1148999999999999965689999


Q ss_pred             EEEcCCCC
Q 025141          179 IIGDLADP  186 (257)
Q Consensus       179 Ii~D~~~~  186 (257)
                      |.+||--|
T Consensus       155 VY~DPMFp  162 (234)
T PF04445_consen  155 VYFDPMFP  162 (234)
T ss_dssp             EEE--S--
T ss_pred             EEECCCCC
Confidence            99999543

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.86  E-value=0.0098  Score=53.59  Aligned_cols=78  Identities=21%  Similarity=0.209  Sum_probs=62.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CC-Ccee
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RK-ESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~-~~fD  177 (257)
                      ++..++|.=+|.|+-+..+++..+..+|+++|.||.+++.+++.+...     ..|+++++++..++.+.   .+ .++|
T Consensus        20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~vD   94 (305)
T TIGR00006        20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKID   94 (305)
T ss_pred             CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence            346899999999999999998643479999999999999999976422     36999999998876543   22 5799


Q ss_pred             EEEEcCC
Q 025141          178 VIIGDLA  184 (257)
Q Consensus       178 vIi~D~~  184 (257)
                      .|+.|+-
T Consensus        95 gIl~DLG  101 (305)
T TIGR00006        95 GILVDLG  101 (305)
T ss_pred             EEEEecc
Confidence            9999984

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.81  E-value=0.021  Score=42.99  Aligned_cols=102  Identities=21%  Similarity=0.215  Sum_probs=64.7

Q ss_pred             EEEEeccchHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhcCC-CceeEEEEc
Q 025141          106 IFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRK-ESYDVIIGD  182 (257)
Q Consensus       106 VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-l~~~~-~~fDvIi~D  182 (257)
                      ++++|||.|... .+...... ..++++|+++.+++.++......    ....+.+...|.... +.-.. ..||++...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA----GLGLVDFVVADALGGVLPFEDSASFDLVISL  126 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc----CCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence            999999999976 33332221 37888999999998855443211    011167888887662 33333 479999333


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      .....  .   .  ....+.. +.+.|+|+|.+++...
T Consensus       127 ~~~~~--~---~--~~~~~~~-~~~~l~~~g~~~~~~~  156 (257)
T COG0500         127 LVLHL--L---P--PAKALRE-LLRVLKPGGRLVLSDL  156 (257)
T ss_pred             eehhc--C---C--HHHHHHH-HHHhcCCCcEEEEEec
Confidence            22111  0   1  3567777 7899999998887653

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.79  E-value=0.0014  Score=58.31  Aligned_cols=189  Identities=17%  Similarity=0.165  Sum_probs=116.2

Q ss_pred             CcCCCCccccCeEEeeeccccceee---eeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHH
Q 025141           20 NVALTGYRKSCWYEEEIEENLRWSF---ALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPA   96 (257)
Q Consensus        20 ~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~   96 (257)
                      ||-+=+-+++.=+.|.+++..--+.   +...+|...+++++++.+-+ +..+.++.+++..+..+.+ ..|...|+.  
T Consensus        95 gviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~s-k~y~p~la~--  170 (337)
T KOG1562|consen   95 GVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESS-KQYLPTLAC--  170 (337)
T ss_pred             CeeeCCccccccceeeeeccccccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHH-HHHhHHHhc--
Confidence            3333344444445556553322222   34568999999999998888 6678888888776555433 346655542  


Q ss_pred             hhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh----hhhccCCCCCCCeEEEEcchHHHHhc-
Q 025141           97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY----LVVNKEAFSDPRLELVINDARAELES-  171 (257)
Q Consensus        97 l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~----~~~~~~~~~~~rv~i~~~Da~~~l~~-  171 (257)
                         .-..++|.++|| +|....+.++..+ ..|+.+|+|..+......|    |..-..++....+.+..+|...+... 
T Consensus       171 ---gy~~~~v~l~iG-DG~~fl~~~~~~~-~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~  245 (337)
T KOG1562|consen  171 ---GYEGKKVKLLIG-DGFLFLEDLKENP-FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDY  245 (337)
T ss_pred             ---ccCCCceEEEec-cHHHHHHHhccCC-ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHH
Confidence               135678988888 8888888886543 6899999999998877665    44333456778899999988655432 


Q ss_pred             --CCCceeEEEEcCCC-CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          172 --RKESYDVIIGDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       172 --~~~~fDvIi~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                        ...+||-++.|..+ ++...|.... .+-.|..| .. |+|+|-+.....
T Consensus       246 i~e~r~~~~~~f~~t~ya~ttvPTyps-g~igf~l~-s~-~~~~~~~~~p~n  294 (337)
T KOG1562|consen  246 IKEGRSFCYVIFDLTAYAITTVPTYPS-GRIGFMLC-SK-LKPDGKYKTPGN  294 (337)
T ss_pred             HHHHHHhHHHhcCccceeeecCCCCcc-ceEEEEEe-cc-cCCCCCccCCCC
Confidence              12445655555432 2322331111 11112222 33 999998887553

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.73  E-value=0.018  Score=48.18  Aligned_cols=125  Identities=18%  Similarity=0.160  Sum_probs=75.1

Q ss_pred             CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE----cchHHHHh---c-C
Q 025141          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELE---S-R  172 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~----~Da~~~l~---~-~  172 (257)
                      +..+||++|+..|+.+..+.+.. +...|.+|||-.-.        +.       +.++++.    .|-..+.+   . +
T Consensus        69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------p~-------~Ga~~i~~~dvtdp~~~~ki~e~lp  133 (232)
T KOG4589|consen   69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------PP-------EGATIIQGNDVTDPETYRKIFEALP  133 (232)
T ss_pred             CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------CC-------CCcccccccccCCHHHHHHHHHhCC
Confidence            45799999999999998888763 56789999984221        22       1222222    23332221   1 3


Q ss_pred             CCceeEEEEcCCCCCCCCc--ccCCchH----HHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceE
Q 025141          173 KESYDVIIGDLADPIEGGP--CYKLYTK----SFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGC  246 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p--~~~L~t~----ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~  246 (257)
                      +.+.|+|++|..... .+.  ..|....    +.+.- .-..+.|+|.++...     |. ...-..+.+.|.+.|..|.
T Consensus       134 ~r~VdvVlSDMapna-TGvr~~Dh~~~i~LC~s~l~~-al~~~~p~g~fvcK~-----w~-g~e~~~l~r~l~~~f~~Vk  205 (232)
T KOG4589|consen  134 NRPVDVVLSDMAPNA-TGVRIRDHYRSIELCDSALLF-ALTLLIPNGSFVCKL-----WD-GSEEALLQRRLQAVFTNVK  205 (232)
T ss_pred             CCcccEEEeccCCCC-cCcchhhHHHHHHHHHHHHHH-hhhhcCCCcEEEEEE-----ec-CCchHHHHHHHHHHhhhcE
Confidence            578999999987421 121  1122111    22222 356788999999764     22 2223466677888888887


Q ss_pred             EEe
Q 025141          247 CAL  249 (257)
Q Consensus       247 ~~~  249 (257)
                      .+.
T Consensus       206 ~vK  208 (232)
T KOG4589|consen  206 KVK  208 (232)
T ss_pred             eeC
Confidence            653

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.69  E-value=0.0078  Score=51.11  Aligned_cols=104  Identities=16%  Similarity=0.138  Sum_probs=53.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHh---c-CCCcEEEEEECCHHHH-HHHHhhhhhccCCCCCCCeEEEEcchHHH-----Hh
Q 025141          101 PNPKTIFIMGGGEGSTAREILR---H-KTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELVINDARAE-----LE  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~---~-~~~~~v~~VEid~~vi-~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-----l~  170 (257)
                      .+|+.|+++|.-.|+.+...+.   . .+.++|.+||||..-. +.+.+..++      .+|++++.||..+-     ++
T Consensus        31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~------~~rI~~i~Gds~d~~~~~~v~  104 (206)
T PF04989_consen   31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM------SPRITFIQGDSIDPEIVDQVR  104 (206)
T ss_dssp             H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTHHHHTSG
T ss_pred             hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc------cCceEEEECCCCCHHHHHHHH
Confidence            4788999999988887765443   2 2457999999975433 223322222      38999999997532     22


Q ss_pred             cC--CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          171 SR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       171 ~~--~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ..  .....+|+.|+....     .+.  ..-++. ....+++|+.+++.
T Consensus       105 ~~~~~~~~vlVilDs~H~~-----~hv--l~eL~~-y~plv~~G~Y~IVe  146 (206)
T PF04989_consen  105 ELASPPHPVLVILDSSHTH-----EHV--LAELEA-YAPLVSPGSYLIVE  146 (206)
T ss_dssp             SS----SSEEEEESS---------SSH--HHHHHH-HHHT--TT-EEEET
T ss_pred             HhhccCCceEEEECCCccH-----HHH--HHHHHH-hCccCCCCCEEEEE
Confidence            22  245669999976322     122  233454 57799999999874

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.55  E-value=0.012  Score=52.17  Aligned_cols=111  Identities=15%  Similarity=0.120  Sum_probs=64.6

Q ss_pred             CCCeEEEEeccchH----HHHHHHhcCC-----CcEEEEEECCHHHHHHHHhhh-h-hcc-CC------------CCC--
Q 025141          102 NPKTIFIMGGGEGS----TAREILRHKT-----VEKVVMCDIDEEVVEFCKSYL-V-VNK-EA------------FSD--  155 (257)
Q Consensus       102 ~~~~VL~IG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~~-~-~~~-~~------------~~~--  155 (257)
                      .+-+|.-.||++|-    ++..+..+.+     .-+|++.|||..+++.|++-. + ... ..            ..+  
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            47799999999996    4444444321     358999999999999998731 1 000 00            011  


Q ss_pred             --------CCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          156 --------PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       156 --------~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                              ..|.+..-|...--. ..+.||+|++-----.-..    -...+.++. .+..|+|||+|++-
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~----~~q~~il~~-f~~~L~~gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDE----ETQERILRR-FADSLKPGGLLFLG  240 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCH----HHHHHHHHH-HHHHhCCCCEEEEc
Confidence                    122232222211000 2356999998532100001    123567777 78999999999874

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.52  E-value=0.011  Score=51.02  Aligned_cols=98  Identities=18%  Similarity=0.208  Sum_probs=64.3

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD  177 (257)
                      ..+.+.+||||..+|+++..++.. ++.+|.+||.--.-+..-     +-    +|||+.++..-=..++..  ..+..|
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~k-----LR----~d~rV~~~E~tN~r~l~~~~~~~~~d  146 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWK-----LR----NDPRVIVLERTNVRYLTPEDFTEKPD  146 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHh-----Hh----cCCcEEEEecCChhhCCHHHcccCCC
Confidence            467899999999999999999995 678999999865433221     11    578988766433333432  235789


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +|++|..-    .+     ....+.. +...|+|++-++.
T Consensus       147 ~~v~DvSF----IS-----L~~iLp~-l~~l~~~~~~~v~  176 (245)
T COG1189         147 LIVIDVSF----IS-----LKLILPA-LLLLLKDGGDLVL  176 (245)
T ss_pred             eEEEEeeh----hh-----HHHHHHH-HHHhcCCCceEEE
Confidence            99999752    11     1223334 4556666665554

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.51  E-value=0.029  Score=51.42  Aligned_cols=139  Identities=14%  Similarity=0.121  Sum_probs=83.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc--CC--CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh------
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH--KT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE------  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~--~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~------  170 (257)
                      .+..+|||+++.-|+=+..++..  ..  ...|.+=|.|+.=....++-....    ..+++.+...|+-.+=.      
T Consensus       154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceeccccccccC
Confidence            34589999999999977666652  22  237999999998777666544321    23455555555433211      


Q ss_pred             --cCCCceeEEEEcCCCCCC----CCc-------------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHH
Q 025141          171 --SRKESYDVIIGDLADPIE----GGP-------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVF  231 (257)
Q Consensus       171 --~~~~~fDvIi~D~~~~~~----~~p-------------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~  231 (257)
                        .....||-|++|.+-...    ..+             .-+......++. ..+.|++||.++-.+.+-+...+....
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~r-gl~lLk~GG~lVYSTCSLnpieNEaVV  308 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRR-GLRLLKVGGRLVYSTCSLNPIENEAVV  308 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHH-HHHHhcCCCEEEEeccCCCchhhHHHH
Confidence              123579999999972111    011             012223456666 478999999999766443323344455


Q ss_pred             HHHHHHHhhhCCc
Q 025141          232 SCIYNTLRQVFKC  244 (257)
Q Consensus       232 ~~~~~~l~~~F~~  244 (257)
                      .++++.+...|+-
T Consensus       309 ~~~L~~~~~~~~l  321 (375)
T KOG2198|consen  309 QEALQKVGGAVEL  321 (375)
T ss_pred             HHHHHHhcCcccc
Confidence            5665555555543

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.40  E-value=0.0045  Score=52.62  Aligned_cols=107  Identities=22%  Similarity=0.279  Sum_probs=57.0

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .|+...|-|+|||++.++..+-.   .-+|...|+-.                 .+++  ++..|..+ +.-.++..|++
T Consensus        70 ~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva-----------------~n~~--Vtacdia~-vPL~~~svDv~  126 (219)
T PF05148_consen   70 RPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA-----------------PNPR--VTACDIAN-VPLEDESVDVA  126 (219)
T ss_dssp             S-TTS-EEEES-TT-HHHHH--S------EEEEESS------------------SSTT--EEES-TTS--S--TT-EEEE
T ss_pred             cCCCEEEEECCCchHHHHHhccc---CceEEEeeccC-----------------CCCC--EEEecCcc-CcCCCCceeEE
Confidence            34556899999999999976532   13577777721                 1233  44566522 33345889999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      +..+.--   +..    -.+|+++ +.|+|||||.+.+--.... +.   ....+.+.+.+.
T Consensus       127 VfcLSLM---GTn----~~~fi~E-A~RvLK~~G~L~IAEV~SR-f~---~~~~F~~~~~~~  176 (219)
T PF05148_consen  127 VFCLSLM---GTN----WPDFIRE-ANRVLKPGGILKIAEVKSR-FE---NVKQFIKALKKL  176 (219)
T ss_dssp             EEES------SS-----HHHHHHH-HHHHEEEEEEEEEEEEGGG--S----HHHHHHHHHCT
T ss_pred             EEEhhhh---CCC----cHHHHHH-HHheeccCcEEEEEEeccc-Cc---CHHHHHHHHHHC
Confidence            9887631   111    2588999 8999999999887432221 22   234555555544

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.31  E-value=0.037  Score=49.52  Aligned_cols=77  Identities=23%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             CCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---C-CCcee
Q 025141          103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---R-KESYD  177 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~-~~~fD  177 (257)
                      ..-.+|.=.|.|+-++.++.. ++..+++++|.||.+++.|++.+.-.     ++|++++++...+....   . ..++|
T Consensus        24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~l~~~l~~~~i~~vD   98 (314)
T COG0275          24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFANLAEALKELGIGKVD   98 (314)
T ss_pred             CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHHHHHHHHhcCCCcee
Confidence            367888888999999999985 44567999999999999999987532     47999999987665432   2 36899


Q ss_pred             EEEEcCC
Q 025141          178 VIIGDLA  184 (257)
Q Consensus       178 vIi~D~~  184 (257)
                      -|+.|+-
T Consensus        99 GiL~DLG  105 (314)
T COG0275          99 GILLDLG  105 (314)
T ss_pred             EEEEecc
Confidence            9999984

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.28  E-value=0.011  Score=46.91  Aligned_cols=64  Identities=20%  Similarity=0.241  Sum_probs=47.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHh-----cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH
Q 025141          101 PNPKTIFIMGGGEGSTAREILR-----HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR  166 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~-----~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~  166 (257)
                      .++..|+|+|+|-|.+++.++.     .+ ..+|++||.++..++.++++....... -..++++..++..
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~   92 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSP-NLRVLGIDCNESLVESAQKRAQKLGSD-LEKRLSFIQGDIA   92 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCC-CCeEEEEECCcHHHHHHHHHHHHhcch-hhccchhhccchh
Confidence            4578999999999999999988     54 469999999999999999876532111 1235555555443

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.27  E-value=0.051  Score=52.22  Aligned_cols=113  Identities=15%  Similarity=0.153  Sum_probs=74.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCC----CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----CC
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKT----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RK  173 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~----~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~----~~  173 (257)
                      ...+|++--||+|++.....++-.    ...+.+.|+++....+|+.++-+++...   .+.+.++|-..-...    ..
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~---~~~i~~~dtl~~~~~~~~~~~  262 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG---DANIRHGDTLSNPKHDDKDDK  262 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc---cccccccccccCCcccccCCc
Confidence            446899999999998776666421    2578999999999999999987664211   445666664333222    33


Q ss_pred             CceeEEEEcCCCC---CCC--------------C-cccCCch-HHHHHHHHcCcCCCCcEEEEe
Q 025141          174 ESYDVIIGDLADP---IEG--------------G-PCYKLYT-KSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       174 ~~fDvIi~D~~~~---~~~--------------~-p~~~L~t-~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++||.|+.++|..   |..              + +...--. .-|++. +...|+|+|...+-
T Consensus       263 ~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h-~~~~l~~~g~aaiv  325 (489)
T COG0286         263 GKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQH-ILYKLKPGGRAAIV  325 (489)
T ss_pred             cceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHH-HHHhcCCCceEEEE
Confidence            6799999998742   110              1 1011112 468888 68899998855443

>PRK11524 putative methyltransferase; Provisional

Probab=96.26  E-value=0.019  Score=51.11  Aligned_cols=65  Identities=20%  Similarity=0.196  Sum_probs=45.2

Q ss_pred             CCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCC--CC-CcccC-------CchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          155 DPRLELVINDARAELESR-KESYDVIIGDLADPI--EG-GPCYK-------LYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       155 ~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~--~~-~p~~~-------L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ....+++++|+.++++.. +++||+|++|||-..  .. .....       -+..+++.+ +.++|||||.+++...
T Consensus         6 ~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~rvLK~~G~i~i~~~   81 (284)
T PRK11524          6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDE-CHRVLKKQGTMYIMNS   81 (284)
T ss_pred             CCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHH-HHHHhCCCcEEEEEcC
Confidence            456689999999998764 478999999987311  00 01000       112468888 6999999999998753

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.25  E-value=0.018  Score=50.18  Aligned_cols=76  Identities=22%  Similarity=0.319  Sum_probs=52.7

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.|.+|+|||||.-=++.-.....+...+.+.|||...++..++++...     .++.++.+.|...-  ...+..|+.
T Consensus       103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~--~~~~~~Dla  175 (251)
T PF07091_consen  103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSD--PPKEPADLA  175 (251)
T ss_dssp             S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTS--HTTSEESEE
T ss_pred             CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeecc--CCCCCcchh
Confidence            35689999999988777765555555569999999999999999998754     36778888875332  245779998


Q ss_pred             EEc
Q 025141          180 IGD  182 (257)
Q Consensus       180 i~D  182 (257)
                      ++=
T Consensus       176 Lll  178 (251)
T PF07091_consen  176 LLL  178 (251)
T ss_dssp             EEE
T ss_pred             hHH
Confidence            864

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.22  E-value=0.016  Score=49.14  Aligned_cols=114  Identities=16%  Similarity=0.160  Sum_probs=81.7

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc----cCCCCCCCeEEEEcchHHHHhcC--CCcee
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN----KEAFSDPRLELVINDARAELESR--KESYD  177 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~----~~~~~~~rv~i~~~Da~~~l~~~--~~~fD  177 (257)
                      -.+.|||||=|+++.+++...+..-|.+.||--.|.+..++.....    .++ .-+++.+...++..|+..-  .++-+
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~-~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEG-QYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccc-ccccceeeeccchhhccchhhhcccc
Confidence            5789999999999999998877788999999999999999876421    122 2578899999999998652  23444


Q ss_pred             EEEEcCCCCCC--CCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~--~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      -++.-.++|.-  ......+.+...+.+ ..=+|++||++.+-.
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~e-yay~l~~gg~~ytit  183 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSE-YAYVLREGGILYTIT  183 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHH-HHhhhhcCceEEEEe
Confidence            44444444321  111235556666777 577999999988743

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.07  E-value=0.0067  Score=50.98  Aligned_cols=98  Identities=21%  Similarity=0.234  Sum_probs=68.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ..|+||++|.|+|..+....+. +...|...|++|-.++..+-+...++     -.+.+...|..-    .+..||+|+.
T Consensus        79 rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~ang-----v~i~~~~~d~~g----~~~~~Dl~La  148 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANG-----VSILFTHADLIG----SPPAFDLLLA  148 (218)
T ss_pred             ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhcc-----ceeEEeeccccC----CCcceeEEEe
Confidence            3699999999999999888875 56899999999999888888776653     467778777432    5688999775


Q ss_pred             -cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 -DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 -D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                       |.+-.    ...+   ...+.  .+++|+..|..++-
T Consensus       149 gDlfy~----~~~a---~~l~~--~~~~l~~~g~~vlv  177 (218)
T COG3897         149 GDLFYN----HTEA---DRLIP--WKDRLAEAGAAVLV  177 (218)
T ss_pred             eceecC----chHH---HHHHH--HHHHHHhCCCEEEE
Confidence             44421    1111   11122  25567777766653

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.06  E-value=0.053  Score=49.54  Aligned_cols=93  Identities=24%  Similarity=0.273  Sum_probs=63.0

Q ss_pred             CCCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhcCCCce
Q 025141          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESRKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~---~Da~~~l~~~~~~f  176 (257)
                      .+.++|+++|+| .|.++.++++..+ .+|++++++++-.+.|++.-.          -.++.   .|..+-++   +.+
T Consensus       165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA----------d~~i~~~~~~~~~~~~---~~~  230 (339)
T COG1064         165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA----------DHVINSSDSDALEAVK---EIA  230 (339)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC----------cEEEEcCCchhhHHhH---hhC
Confidence            456899999987 3446777777555 799999999999999998621          12222   33334333   349


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      |+|+.-.. +.           . +.. ..+.|+++|.+++-..+
T Consensus       231 d~ii~tv~-~~-----------~-~~~-~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         231 DAIIDTVG-PA-----------T-LEP-SLKALRRGGTLVLVGLP  261 (339)
T ss_pred             cEEEECCC-hh-----------h-HHH-HHHHHhcCCEEEEECCC
Confidence            99997755 21           1 233 35689999999876544

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.05  E-value=0.045  Score=47.55  Aligned_cols=122  Identities=19%  Similarity=0.237  Sum_probs=79.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHH----HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEE----VVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RK  173 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~----vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~  173 (257)
                      +...+||-||+++|.+..++... .+..-|.+||.++.    .+.+|++          .+++-=+++||+.--+-  .-
T Consensus       155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArhP~KYRmlV  224 (317)
T KOG1596|consen  155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARHPAKYRMLV  224 (317)
T ss_pred             cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCCchheeeee
Confidence            45689999999999998888774 33457999999864    3444443          36777788998765432  12


Q ss_pred             CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCC---CCChHHHHHHHHHHhhh
Q 025141          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI---FSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~---~~~~~~~~~~~~~l~~~  241 (257)
                      .-.|+||.|.+.|...        +-..-. +.--||++|-+++..-+++.   ......|..-.+.|++.
T Consensus       225 gmVDvIFaDvaqpdq~--------RivaLN-A~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee  286 (317)
T KOG1596|consen  225 GMVDVIFADVAQPDQA--------RIVALN-AQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEE  286 (317)
T ss_pred             eeEEEEeccCCCchhh--------hhhhhh-hhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHh
Confidence            5789999998755321        111112 46689999977765432221   12345677777777753

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.00  E-value=0.034  Score=47.49  Aligned_cols=115  Identities=18%  Similarity=0.202  Sum_probs=65.6

Q ss_pred             CCCCeEEEEeccchHHHHHHH--hcCCCcEEEEEECCHHHHHHHHhhhhhcc-C--------------------------
Q 025141          101 PNPKTIFIMGGGEGSTAREIL--RHKTVEKVVMCDIDEEVVEFCKSYLVVNK-E--------------------------  151 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~--~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~--------------------------  151 (257)
                      ..|-.+-|-+||+|.++..+.  +......|.+=|||++++++|++++.+.. +                          
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~  129 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE  129 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            457789999999999875443  33445689999999999999999875321 0                          


Q ss_pred             -----------CCCCCCeEEEEcchHHHHh----cCCCceeEEEEcCCCC----CCCCcccCCchHHHHHHHHcCcCCCC
Q 025141          152 -----------AFSDPRLELVINDARAELE----SRKESYDVIIGDLADP----IEGGPCYKLYTKSFYEFVVKPRLNPE  212 (257)
Q Consensus       152 -----------~~~~~rv~i~~~Da~~~l~----~~~~~fDvIi~D~~~~----~~~~p~~~L~t~ef~~~~~~~~L~pg  212 (257)
                                 .-......+...|.++.-.    .....-|+|+.|.+-.    |. ++...-=...++.. +...|.++
T Consensus       130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~-g~~~~~p~~~ml~~-l~~vLp~~  207 (246)
T PF11599_consen  130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQ-GEGSGGPVAQMLNS-LAPVLPER  207 (246)
T ss_dssp             HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTT-S---HHHHHHHHHH-HHCCS-TT
T ss_pred             HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccccccc-CCCCCCcHHHHHHH-HHhhCCCC
Confidence                       0012346677777766432    2234469999999732    32 11001113578898 79999777


Q ss_pred             cEEEE
Q 025141          213 GIFVT  217 (257)
Q Consensus       213 Gil~~  217 (257)
                      +++++
T Consensus       208 sVV~v  212 (246)
T PF11599_consen  208 SVVAV  212 (246)
T ss_dssp             -EEEE
T ss_pred             cEEEE
Confidence            88877

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=96.00  E-value=0.033  Score=48.76  Aligned_cols=144  Identities=21%  Similarity=0.285  Sum_probs=68.4

Q ss_pred             HHHHHHHHHh--hcCCCCCeEEEEeccchH--H-HHHHHh-c-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE
Q 025141           88 YHESLVHPAL--LHHPNPKTIFIMGGGEGS--T-AREILR-H-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL  160 (257)
Q Consensus        88 y~e~l~~~~l--~~~~~~~~VL~IG~G~G~--~-~~~l~~-~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i  160 (257)
                      |++....+.-  +..|...+||.+|+|+--  . ...+++ . |..+.++-.|+++-+               .| .-..
T Consensus        45 YtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------SD-a~~~  108 (299)
T PF06460_consen   45 YTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------SD-ADQS  108 (299)
T ss_dssp             HHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------S-SSEE
T ss_pred             HHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------cc-cCCc
Confidence            6655443321  234778899999998632  1 122222 2 444566667775443               12 2356


Q ss_pred             EEcchHHHHhcCCCceeEEEEcCCCCCCCCc-----ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025141          161 VINDARAELESRKESYDVIIGDLADPIEGGP-----CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (257)
Q Consensus       161 ~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p-----~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~  235 (257)
                      +.+|.+.+.  .+.+||+||+|.+++....-     ...-+..-+..- ++..|+-||.+++...-- +| ..+     +
T Consensus       109 ~~~Dc~t~~--~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~-i~~kLaLGGSvaiKiTE~-Sw-~~~-----L  178 (299)
T PF06460_consen  109 IVGDCRTYM--PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGF-IKEKLALGGSVAIKITEH-SW-NAQ-----L  178 (299)
T ss_dssp             EES-GGGEE--ESS-EEEEEE----TTS-SS-S------THHHHHHHH-HHHHEEEEEEEEEEE-SS-S---HH-----H
T ss_pred             eeccccccC--CCCcccEEEEecccccccccccccCCccccHHHHHHH-HHhhhhcCceEEEEeecc-cc-cHH-----H
Confidence            778887774  45899999999996432110     011222222332 578999999999876322 13 222     2


Q ss_pred             HHHhhhCCceEEEee-----cCccccC
Q 025141          236 NTLRQVFKCGCCALF-----SSYSFFC  257 (257)
Q Consensus       236 ~~l~~~F~~v~~~~~-----~~~~~~~  257 (257)
                      -.|.+.|.....|-+     +|+.|+|
T Consensus       179 yel~~~F~~wt~FcT~VNtSSSEaFLi  205 (299)
T PF06460_consen  179 YELMGYFSWWTCFCTAVNTSSSEAFLI  205 (299)
T ss_dssp             HHHHTTEEEEEEEEEGGGTTSS-EEEE
T ss_pred             HHHHhhcccEEEEecccCccccceeEE
Confidence            346777888887766     5555543

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=95.99  E-value=0.099  Score=46.18  Aligned_cols=129  Identities=16%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             CCCeEEEEeccchH--HHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhc----
Q 025141          102 NPKTIFIMGGGEGS--TAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES----  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~--~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---l~~----  171 (257)
                      .-+..||||||-=+  ...++++. .+..+|..||.||.++.-+|..+.-+    ...+..++.+|.++-   +..    
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~----~~g~t~~v~aD~r~p~~iL~~p~~~  143 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN----PRGRTAYVQADLRDPEAILAHPEVR  143 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-----TTSEEEEEE--TT-HHHHHCSHHHH
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC----CCccEEEEeCCCCCHHHHhcCHHHH
Confidence            45789999999654  45666552 34589999999999999999876533    112489999998763   221    


Q ss_pred             ----CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          172 ----RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       172 ----~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                          ..++.=++++........    .---.+.++. +++.|.||..+++...+..  ..+...+.+.+.+++.
T Consensus       144 ~~lD~~rPVavll~~vLh~v~D----~~dp~~iv~~-l~d~lapGS~L~ish~t~d--~~p~~~~~~~~~~~~~  210 (267)
T PF04672_consen  144 GLLDFDRPVAVLLVAVLHFVPD----DDDPAGIVAR-LRDALAPGSYLAISHATDD--GAPERAEALEAVYAQA  210 (267)
T ss_dssp             CC--TTS--EEEECT-GGGS-C----GCTHHHHHHH-HHCCS-TT-EEEEEEEB-T--TSHHHHHHHHHHHHHC
T ss_pred             hcCCCCCCeeeeeeeeeccCCC----ccCHHHHHHH-HHHhCCCCceEEEEecCCC--CCHHHHHHHHHHHHcC
Confidence                123344555554321100    0112577888 7999999999988654432  2344444455555544

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PTZ00357 methyltransferase; Provisional

Probab=95.98  E-value=0.026  Score=55.67  Aligned_cols=104  Identities=18%  Similarity=0.316  Sum_probs=64.4

Q ss_pred             eEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCC------CCCCeEEEEcchHHHHhcC--
Q 025141          105 TIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAF------SDPRLELVINDARAELESR--  172 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~------~~~rv~i~~~Da~~~l~~~--  172 (257)
                      .|+++|+|-|-+....++.    .-..+|.+||.||..+...+.... +...|      .+.+|+++..|.|.|-...  
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~-N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWA-NDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHh-cccccccccccCCCeEEEEeCccccccccccc
Confidence            5899999999987766652    112489999999664433333321 11123      2468999999999984221  


Q ss_pred             --------CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCC----CcE
Q 025141          173 --------KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP----EGI  214 (257)
Q Consensus       173 --------~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p----gGi  214 (257)
                              -++.|+||+.+-....+   .+| +.|-+.- +.+.||+    +||
T Consensus       782 ~s~~~P~~~gKaDIVVSELLGSFGD---NEL-SPECLDG-aQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSELLGSLGD---NEL-SPECLEA-FHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehHhhhccccc---ccC-CHHHHHH-HHHhhhhhcccccc
Confidence                    13799999987543311   122 4555555 4556665    665

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.97  E-value=0.02  Score=51.68  Aligned_cols=78  Identities=22%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---HhcC--CCce
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESR--KESY  176 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---l~~~--~~~f  176 (257)
                      +....+|.=.|.|+-+..+++..+..+++++|.||++++.|++.+...     ++|+.+++++..++   +...  ..++
T Consensus        20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l~~~l~~~~~~~~~   94 (310)
T PF01795_consen   20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNLDEYLKELNGINKV   94 (310)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGHHHHHHHTTTTS-E
T ss_pred             CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHHHHHHHHccCCCcc
Confidence            445788988899999999997644489999999999999999876522     57999999887554   3333  3689


Q ss_pred             eEEEEcCC
Q 025141          177 DVIIGDLA  184 (257)
Q Consensus       177 DvIi~D~~  184 (257)
                      |.|+.|+-
T Consensus        95 dgiL~DLG  102 (310)
T PF01795_consen   95 DGILFDLG  102 (310)
T ss_dssp             EEEEEE-S
T ss_pred             CEEEEccc
Confidence            99999984

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=95.64  E-value=0.039  Score=48.46  Aligned_cols=85  Identities=26%  Similarity=0.308  Sum_probs=56.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +...-|-|+|||.+-++.   ...  ..|...|+-                   ..+-+++.-|.++ +.-.+++.|+++
T Consensus       179 ~~~~vIaD~GCGEakiA~---~~~--~kV~SfDL~-------------------a~~~~V~~cDm~~-vPl~d~svDvaV  233 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS---SER--HKVHSFDLV-------------------AVNERVIACDMRN-VPLEDESVDVAV  233 (325)
T ss_pred             cCceEEEecccchhhhhh---ccc--cceeeeeee-------------------cCCCceeeccccC-CcCccCcccEEE
Confidence            445568889999998886   211  356666662                   1223455566655 444568899988


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ..+.--   +.  .+  .+|+.+ +.|+|++||.+.+-
T Consensus       234 ~CLSLM---gt--n~--~df~kE-a~RiLk~gG~l~IA  263 (325)
T KOG3045|consen  234 FCLSLM---GT--NL--ADFIKE-ANRILKPGGLLYIA  263 (325)
T ss_pred             eeHhhh---cc--cH--HHHHHH-HHHHhccCceEEEE
Confidence            877531   11  22  489999 89999999988764

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.38  E-value=0.19  Score=48.57  Aligned_cols=108  Identities=19%  Similarity=0.214  Sum_probs=62.2

Q ss_pred             CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc---CCCCCC-C----eEEEEcchH----HH
Q 025141          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK---EAFSDP-R----LELVINDAR----AE  168 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~---~~~~~~-r----v~i~~~Da~----~~  168 (257)
                      .+.+|+++|+|.=++ +...++..+. +|+++|.+++..+.+++. +...   +..++. .    .+-.-.|..    +.
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            589999999997654 5556666664 899999999999999984 2110   000000 0    000111211    11


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +.+..+.+|+||.-...|..  +...+.+.    + +-+.++|||+++.-
T Consensus       242 ~~~~~~gaDVVIetag~pg~--~aP~lit~----~-~v~~mkpGgvIVdv  284 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGK--PAPKLITA----E-MVASMKPGSVIVDL  284 (509)
T ss_pred             HHhccCCCCEEEECCCCCcc--cCcchHHH----H-HHHhcCCCCEEEEE
Confidence            11112469999988765432  22234344    4 35578899988754

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.26  E-value=0.16  Score=46.53  Aligned_cols=98  Identities=22%  Similarity=0.272  Sum_probs=65.6

Q ss_pred             CCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hcCC-CceeEE
Q 025141          103 PKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRK-ESYDVI  179 (257)
Q Consensus       103 ~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-~~~~-~~fDvI  179 (257)
                      ..+|+++|+|.=+ ++..+++..+..+|+++|++++=+++|++++.....  .++.-+    |....+ ..+. ..+|++
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~--~~~~~~----~~~~~~~~~t~g~g~D~v  242 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV--VNPSED----DAGAEILELTGGRGADVV  242 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe--ecCccc----cHHHHHHHHhCCCCCCEE
Confidence            3489999999755 456777777788999999999999999997643210  111111    333333 2233 469999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |--.-            +...+.. +-+.++|+|.+++-.
T Consensus       243 ie~~G------------~~~~~~~-ai~~~r~gG~v~~vG  269 (350)
T COG1063         243 IEAVG------------SPPALDQ-ALEALRPGGTVVVVG  269 (350)
T ss_pred             EECCC------------CHHHHHH-HHHHhcCCCEEEEEe
Confidence            85432            2235666 578999999988764

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=95.20  E-value=0.16  Score=44.47  Aligned_cols=123  Identities=15%  Similarity=0.161  Sum_probs=69.6

Q ss_pred             EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCceeEEEEcC
Q 025141          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL  183 (257)
Q Consensus       107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fDvIi~D~  183 (257)
                      |..=.|+=.+++.+++.  ..+.+.+|+.|.-.+..+++|.      .++++++++.|+.+-++.   +.++=-+|++|+
T Consensus        62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~------~~~~v~v~~~DG~~~l~allPP~~rRglVLIDP  133 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFR------RDRRVRVHHRDGYEGLKALLPPPERRGLVLIDP  133 (245)
T ss_dssp             --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--------TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred             cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhc------cCCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence            44445666788888773  4699999999999999998875      357999999999998875   346678999998


Q ss_pred             CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceE
Q 025141          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGC  246 (257)
Q Consensus       184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~  246 (257)
                      +-..   +...---.+.+.. +.++- +.|+++++-  |  .........+.+.|++. .+.+.
T Consensus       134 pYE~---~~dy~~v~~~l~~-a~kR~-~~G~~~iWY--P--i~~~~~~~~~~~~l~~~~~~~~l  188 (245)
T PF04378_consen  134 PYEQ---KDDYQRVVDALAK-ALKRW-PTGVYAIWY--P--IKDRERVDRFLRALKALGIKKVL  188 (245)
T ss_dssp             ---S---TTHHHHHHHHHHH-HHHH--TTSEEEEEE--E--ESSHHHHHHHHHHHHHH-SSE-E
T ss_pred             CCCC---chHHHHHHHHHHH-HHHhc-CCcEEEEEe--e--cccHHHHHHHHHHHHhcCCCCeE
Confidence            5211   1111112233443 23333 478888875  3  34566677888888865 44443

; PDB: 2OO3_A.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.18  E-value=0.14  Score=46.42  Aligned_cols=97  Identities=15%  Similarity=0.206  Sum_probs=58.0

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. ....      -+.....|..+..+. .+.+|+|+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~~------vi~~~~~~~~~~~~~-~g~~D~vi  240 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GADK------LVNPQNDDLDHYKAE-KGYFDVSF  240 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCcE------EecCCcccHHHHhcc-CCCCCEEE
Confidence            467899998742 22455666666666899999999999999874 2110      000011233333332 24589887


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      -. ..    .       ...++. +.+.|+++|.++.-.
T Consensus       241 d~-~G----~-------~~~~~~-~~~~l~~~G~iv~~G  266 (343)
T PRK09880        241 EV-SG----H-------PSSINT-CLEVTRAKGVMVQVG  266 (343)
T ss_pred             EC-CC----C-------HHHHHH-HHHHhhcCCEEEEEc
Confidence            43 21    1       123445 467899999988643

>PRK13699 putative methylase; Provisional

Probab=95.12  E-value=0.045  Score=47.28  Aligned_cols=60  Identities=10%  Similarity=0.155  Sum_probs=42.0

Q ss_pred             EEEEcchHHHHhcC-CCceeEEEEcCCCCC--CC--C-c-ccC---CchHHHHHHHHcCcCCCCcEEEEec
Q 025141          159 ELVINDARAELESR-KESYDVIIGDLADPI--EG--G-P-CYK---LYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       159 ~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~--~~--~-p-~~~---L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +++++|+++.++.. ++..|+|+.|||-..  ..  + . ...   -+..+++.+ ++++|||||.+++..
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E-~~RVLKpgg~l~if~   72 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNE-MYRVLKKDALMVSFY   72 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHH-HHHHcCCCCEEEEEe
Confidence            68899999999774 588999999987321  00  0 0 001   123467788 689999999998754

>PHA01634 hypothetical protein

Probab=95.06  E-value=0.082  Score=41.60  Aligned_cols=76  Identities=20%  Similarity=0.182  Sum_probs=54.8

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .-..++|++||++-|..+..++-. ++++|.++|.+|...+..++....+.-  -|.-+ .. +   +| ...-+.||+-
T Consensus        26 dvk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI--~DK~v-~~-~---eW-~~~Y~~~Di~   96 (156)
T PHA01634         26 NVYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNI--CDKAV-MK-G---EW-NGEYEDVDIF   96 (156)
T ss_pred             eecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhhee--eecee-ec-c---cc-cccCCCcceE
Confidence            457899999999999999988874 678999999999999999997765420  11111 11 1   12 1234789999


Q ss_pred             EEcCC
Q 025141          180 IGDLA  184 (257)
Q Consensus       180 i~D~~  184 (257)
                      .+|--
T Consensus        97 ~iDCe  101 (156)
T PHA01634         97 VMDCE  101 (156)
T ss_pred             EEEcc
Confidence            99864

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.06  E-value=0.058  Score=43.64  Aligned_cols=131  Identities=21%  Similarity=0.252  Sum_probs=73.2

Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh----ccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV----NKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~----~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +|.+||+|.++.+....-.....+|+....+++.++..++.-..    ++.. ..+++. ...|..+.++    .-|+|+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~-l~~~i~-~t~dl~~a~~----~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIK-LPENIK-ATTDLEEALE----DADIII   74 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSB-EETTEE-EESSHHHHHT----T-SEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcc-cCcccc-cccCHHHHhC----cccEEE
Confidence            58899999998764433222236899999999888877764321    1100 113444 3567666663    469999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCccc
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~  255 (257)
                      +-.+.         ..-++++++ ++..|+++-.++.-..  + + .......+.+.+++.++.-.....++|+|
T Consensus        75 iavPs---------~~~~~~~~~-l~~~l~~~~~ii~~~K--G-~-~~~~~~~~~~~i~~~~~~~~~~~lsGP~~  135 (157)
T PF01210_consen   75 IAVPS---------QAHREVLEQ-LAPYLKKGQIIISATK--G-F-EPGTLLLLSEVIEEILPIPRIAVLSGPSF  135 (157)
T ss_dssp             E-S-G---------GGHHHHHHH-HTTTSHTT-EEEETS---S-E-ETTEEEEHHHHHHHHHSSCGEEEEESS--
T ss_pred             ecccH---------HHHHHHHHH-HhhccCCCCEEEEecC--C-c-ccCCCccHHHHHHHHhhhcceEEeeCccH
Confidence            87542         234789999 7999977766664321  1 1 11112233344555555444555566655

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.04  E-value=0.17  Score=46.68  Aligned_cols=110  Identities=19%  Similarity=0.159  Sum_probs=65.7

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-hHHHHhc-C-CCcee
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELES-R-KESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D-a~~~l~~-~-~~~fD  177 (257)
                      +..+||++|+|. |..+..+++..+..++++++.+++..+.++++...       ..+.....| ..+.+.. . .+.+|
T Consensus       184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~D  256 (386)
T cd08283         184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGPD  256 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCCC
Confidence            457899999887 77788888876655799999999999999986421       111222222 3333332 2 24699


Q ss_pred             EEEEcCCCCCCCCcccC---------CchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYK---------LYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~---------L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+--........+..+         --+...+.. +.+.|+++|.++.-.
T Consensus       257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~g  306 (386)
T cd08283         257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALRE-AIQAVRKGGTVSIIG  306 (386)
T ss_pred             EEEECCCCcccccccccccccccccccCchHHHHH-HHHHhccCCEEEEEc
Confidence            88764321100000000         012344566 577899999888653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=94.96  E-value=0.18  Score=44.84  Aligned_cols=122  Identities=20%  Similarity=0.248  Sum_probs=76.2

Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC-ceeEEEEcC
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDL  183 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~-~fDvIi~D~  183 (257)
                      +++++-+|.|++..-+.+. +...+.++|+|+...+.-+.+++           ....+|..+.-...-. ..|+++.-+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPKDVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccccceEEEecc
Confidence            6899999999998887774 46688999999999999998874           5677787665433112 599999887


Q ss_pred             CC-CCC-C-------CcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          184 AD-PIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       184 ~~-~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      +- +.+ .       .+...|+ .++++. + +.++|.-+++=|+..-........+..+.+.|.+.
T Consensus        70 PCQ~fS~ag~~~~~~d~r~~L~-~~~~~~-v-~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~l  133 (335)
T PF00145_consen   70 PCQGFSIAGKRKGFDDPRNSLF-FEFLRI-V-KELKPKYFLLENVPGLLSSKNGEVFKEILEELEEL  133 (335)
T ss_dssp             --TTTSTTSTHHCCCCHTTSHH-HHHHHH-H-HHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHT
T ss_pred             CCceEeccccccccccccchhh-HHHHHH-H-hhccceEEEecccceeecccccccccccccccccc
Confidence            62 211 1       1112233 467775 3 56889887776652211011235677888888764

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.89  E-value=0.23  Score=44.83  Aligned_cols=98  Identities=21%  Similarity=0.378  Sum_probs=66.4

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.+|.+||+|. |.-+..++---+ +.|+.+|+|.+-++.....|.        .|++.+.....++ +..-.++|++|
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~i-ee~v~~aDlvI  236 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNI-EEAVKKADLVI  236 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccC-CeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHH-HHHhhhccEEE
Confidence            356888998875 334444444333 699999999888877766552        4788887776654 33347899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      ...--|....|  .|.+++..     +.|+||++++
T Consensus       237 gaVLIpgakaP--kLvt~e~v-----k~MkpGsViv  265 (371)
T COG0686         237 GAVLIPGAKAP--KLVTREMV-----KQMKPGSVIV  265 (371)
T ss_pred             EEEEecCCCCc--eehhHHHH-----HhcCCCcEEE
Confidence            87654443344  67766643     4588999886

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=94.81  E-value=0.053  Score=48.06  Aligned_cols=79  Identities=24%  Similarity=0.376  Sum_probs=56.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi  180 (257)
                      ..++|+++|=-+-.....++.. -.++|.+||||+..+..-++...-.    .-.+++.+.=|.++-+.+ ...+||+++
T Consensus       152 ~gK~I~vvGDDDLtsia~aLt~-mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi  226 (354)
T COG1568         152 EGKEIFVVGDDDLTSIALALTG-MPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI  226 (354)
T ss_pred             CCCeEEEEcCchhhHHHHHhcC-CCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence            4689999995444433333332 2479999999999999988876532    234677788888776643 347899999


Q ss_pred             EcCCC
Q 025141          181 GDLAD  185 (257)
Q Consensus       181 ~D~~~  185 (257)
                      .||+.
T Consensus       227 TDPpe  231 (354)
T COG1568         227 TDPPE  231 (354)
T ss_pred             cCchh
Confidence            99874

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.76  E-value=0.13  Score=44.40  Aligned_cols=126  Identities=23%  Similarity=0.267  Sum_probs=78.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhc-----C-CCc---EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH------
Q 025141          102 NPKTIFIMGGGEGSTAREILRH-----K-TVE---KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------  166 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~-----~-~~~---~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~------  166 (257)
                      .-++|++++...|+.+..+.+.     + ..+   .|++||+.|.+        +.       +.|.-+.+|..      
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------PI-------~GV~qlq~DIT~~stae  105 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------PI-------EGVIQLQGDITSASTAE  105 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------cc-------CceEEeecccCCHhHHH
Confidence            3579999999999987776652     1 112   39999997765        22       34555555542      


Q ss_pred             HHHhc-CCCceeEEEEcCCCCCCCCccc--CCch----HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025141          167 AELES-RKESYDVIIGDLADPIEGGPCY--KLYT----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (257)
Q Consensus       167 ~~l~~-~~~~fDvIi~D~~~~~~~~p~~--~L~t----~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~  239 (257)
                      ..++- .+++-|+|++|...... +.+.  +...    ...+.. ...+|+|||.++...      .+.+...-++..|+
T Consensus       106 ~Ii~hfggekAdlVvcDGAPDvT-GlHd~DEy~Q~qLllaAl~i-~t~Vlk~Gg~FVaKi------fRg~~tslLysql~  177 (294)
T KOG1099|consen  106 AIIEHFGGEKADLVVCDGAPDVT-GLHDLDEYVQAQLLLAALNI-ATCVLKPGGSFVAKI------FRGRDTSLLYSQLR  177 (294)
T ss_pred             HHHHHhCCCCccEEEeCCCCCcc-ccccHHHHHHHHHHHHHHHH-HhheecCCCeeehhh------hccCchHHHHHHHH
Confidence            22322 24689999999753221 2210  0011    122332 357999999999753      23344557788899


Q ss_pred             hhCCceEEEee
Q 025141          240 QVFKCGCCALF  250 (257)
Q Consensus       240 ~~F~~v~~~~~  250 (257)
                      ..|+.|..+.-
T Consensus       178 ~ff~kv~~~KP  188 (294)
T KOG1099|consen  178 KFFKKVTCAKP  188 (294)
T ss_pred             HHhhceeeecC
Confidence            99999887654

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=0.036  Score=48.55  Aligned_cols=111  Identities=16%  Similarity=0.135  Sum_probs=78.9

Q ss_pred             CeEEEEeccchHHHHHHHhc----C--------CCcEEEEEECCHHHHHHHHhh--hhh------------c-------c
Q 025141          104 KTIFIMGGGEGSTAREILRH----K--------TVEKVVMCDIDEEVVEFCKSY--LVV------------N-------K  150 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~----~--------~~~~v~~VEid~~vi~~a~~~--~~~------------~-------~  150 (257)
                      -.|+++|.|+|.....+.+.    .        ...+++.+|.+|......+..  .+.            .       .
T Consensus        60 ~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~r  139 (252)
T COG4121          60 LQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCAA  139 (252)
T ss_pred             eeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhHH
Confidence            46888999999976665542    1        223678889888655443321  000            0       0


Q ss_pred             CCC-CCCCeEEEEcchHHHHhcCCC---ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          151 EAF-SDPRLELVINDARAELESRKE---SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       151 ~~~-~~~rv~i~~~Da~~~l~~~~~---~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ..+ ..-++.++++|+++.+.....   ++|+.+.|.|.|.. .|  .+++.|++.. ++++.+|||.+++.
T Consensus       140 ~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~k-NP--~mW~~e~l~~-~a~~~~~~~~l~t~  207 (252)
T COG4121         140 AVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVK-NP--EMWEDELLNL-MARIPYRDPTLATF  207 (252)
T ss_pred             hhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccC-Ch--hhccHHHHHH-HHhhcCCCCceech
Confidence            011 234668899999999877665   79999999998763 44  7899999999 89999999999874

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.63  E-value=0.34  Score=44.88  Aligned_cols=98  Identities=24%  Similarity=0.407  Sum_probs=55.3

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.+|+++|+|. |..+...++..+. +|+++|.+++-.+.+.+.+..        .+.....+. +.+.+.-..+|+||
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~-~~l~~~l~~aDvVI  235 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG--------RIHTRYSNA-YEIEDAVKRADLLI  235 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc--------eeEeccCCH-HHHHHHHccCCEEE
Confidence            567899999973 3344444554454 799999998876665543321        111111221 22222224689999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      ....-+....|  .+.+.+.++     .++|+++++
T Consensus       236 ~a~~~~g~~~p--~lit~~~l~-----~mk~g~vIv  264 (370)
T TIGR00518       236 GAVLIPGAKAP--KLVSNSLVA-----QMKPGAVIV  264 (370)
T ss_pred             EccccCCCCCC--cCcCHHHHh-----cCCCCCEEE
Confidence            87643221123  466666554     367887766

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=94.62  E-value=0.031  Score=52.35  Aligned_cols=78  Identities=13%  Similarity=0.256  Sum_probs=52.5

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~  183 (257)
                      --||+||.|+|.++..+.+. +...||++|.-..+.+.||+-...++   -..+++++..--.+.-.....+-|+++...
T Consensus        68 v~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng---~SdkI~vInkrStev~vg~~~RadI~v~e~  143 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNG---MSDKINVINKRSTEVKVGGSSRADIAVRED  143 (636)
T ss_pred             EEEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCC---CccceeeeccccceeeecCcchhhhhhHhh
Confidence            35899999999999888885 46789999999999999999776543   235666665422111001113456665555


Q ss_pred             CC
Q 025141          184 AD  185 (257)
Q Consensus       184 ~~  185 (257)
                      ++
T Consensus       144 fd  145 (636)
T KOG1501|consen  144 FD  145 (636)
T ss_pred             hh
Confidence            54

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.55  E-value=0.19  Score=45.58  Aligned_cols=101  Identities=13%  Similarity=0.115  Sum_probs=63.1

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CCcee
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~~fD  177 (257)
                      ....+||++|+|.=+ .+...++..+..+|.++|+++.-+++||+ |+...- ....+-. ...+.++-++..  ...+|
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~-~~~~~~~-~~~~~~~~v~~~~g~~~~d  244 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT-DPSSHKS-SPQELAELVEKALGKKQPD  244 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE-eeccccc-cHHHHHHHHHhhccccCCC
Confidence            346899999999644 45555666778899999999999999999 543210 0011111 234444545432  24588


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +.|--.-.    .+        -++. .-..|+.+|.+++
T Consensus       245 ~~~dCsG~----~~--------~~~a-ai~a~r~gGt~vl  271 (354)
T KOG0024|consen  245 VTFDCSGA----EV--------TIRA-AIKATRSGGTVVL  271 (354)
T ss_pred             eEEEccCc----hH--------HHHH-HHHHhccCCEEEE
Confidence            88754321    11        2344 4568999998554

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=94.41  E-value=0.036  Score=47.63  Aligned_cols=61  Identities=16%  Similarity=0.263  Sum_probs=49.1

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~  168 (257)
                      ...-|..||-|.|++++.++.. +..+..+||+|+..+.-.+...+.     .+.+..+|++|+..|
T Consensus        50 ~~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EA-----a~~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEA-----APGKLRIHHGDVLRF  110 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhc-----CCcceEEecccccee
Confidence            3467999999999999999985 578999999999988776654332     245899999998665

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.30  E-value=0.45  Score=45.95  Aligned_cols=106  Identities=20%  Similarity=0.241  Sum_probs=60.9

Q ss_pred             CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCC--------CCCCeEEEEcchHHH----
Q 025141          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF--------SDPRLELVINDARAE----  168 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~--------~~~rv~i~~~Da~~~----  168 (257)
                      ++.+||++|+|.=+. +..+++..+ .+|+++|.+++..+.+++. +...-..        .+.-.+..-.|..+.    
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            468999999987654 444555445 4799999999999988873 2110000        000011111221111    


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      +.+.-+.+|+||....-|.  .+...|.+++..+     .+|||++++
T Consensus       241 ~~e~~~~~DIVI~TalipG--~~aP~Lit~emv~-----~MKpGsvIV  281 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPG--KPAPKLITEEMVD-----SMKAGSVIV  281 (511)
T ss_pred             HHHHhCCCCEEEECcccCC--CCCCeeehHHHHh-----hCCCCCEEE
Confidence            1222367999988775443  2223677776544     578888766

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=94.27  E-value=0.55  Score=42.48  Aligned_cols=120  Identities=14%  Similarity=0.211  Sum_probs=73.7

Q ss_pred             EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025141          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       106 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~  185 (257)
                      |+++-||.|++..-+.+. +...+.++|+|+...+..+.+++.          .++.+|..+.-...-...|+++..++-
T Consensus         1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~~~~~dvl~gg~PC   69 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSDIPDFDILLGGFPC   69 (315)
T ss_pred             CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhhCCCcCEEEecCCC
Confidence            578999999988777653 555677899999999999987641          344577766543223468999988762


Q ss_pred             -CCC-C-------CcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCC--CChHHHHHHHHHHhhh
Q 025141          186 -PIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--SHTEVFSCIYNTLRQV  241 (257)
Q Consensus       186 -~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~--~~~~~~~~~~~~l~~~  241 (257)
                       +.+ .       .+...| -.++++. + +.++|.=+++=|.  ++..  ...+.+..+.+.|+..
T Consensus        70 q~fS~ag~~~~~~d~r~~L-~~~~~r~-i-~~~~P~~~v~ENV--~~l~~~~~~~~~~~i~~~l~~~  131 (315)
T TIGR00675        70 QPFSIAGKRKGFEDTRGTL-FFEIVRI-L-KEKKPKFFLLENV--KGLVSHDKGRTFKVIIETLEEL  131 (315)
T ss_pred             cccchhcccCCCCCchhhH-HHHHHHH-H-hhcCCCEEEeecc--HHHHhcccchHHHHHHHHHHhC
Confidence             111 0       111122 2466665 3 4678875555443  2111  1234566777777654

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=94.25  E-value=0.56  Score=41.02  Aligned_cols=118  Identities=14%  Similarity=0.170  Sum_probs=84.8

Q ss_pred             EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCceeEEEEcC
Q 025141          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL  183 (257)
Q Consensus       107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fDvIi~D~  183 (257)
                      |-.=+|+=-+++.+++.  ..++...|+.|.=....++.|.      .+.|+++..+|++.-++.   .+++=-+|++|+
T Consensus        93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP  164 (279)
T COG2961          93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP  164 (279)
T ss_pred             cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence            66677888899999884  3699999999999999999886      368999999999998876   346688999998


Q ss_pred             CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      +-..   ....--..+.+++ ..++. ++|+++++-  |  ....+..+++.+.|++.
T Consensus       165 PfE~---~~eY~rvv~~l~~-~~kRf-~~g~yaiWY--P--ik~r~~~~~f~~~L~~~  213 (279)
T COG2961         165 PFEL---KDEYQRVVEALAE-AYKRF-ATGTYAIWY--P--IKDRRQIRRFLRALEAL  213 (279)
T ss_pred             Cccc---ccHHHHHHHHHHH-HHHhh-cCceEEEEE--e--ecchHHHHHHHHHHhhc
Confidence            6321   1011112344444 33333 378888874  3  34566777888888875

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.15  E-value=0.38  Score=45.78  Aligned_cols=106  Identities=18%  Similarity=0.235  Sum_probs=71.4

Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~  184 (257)
                      ++|.+|||.=-+...+.+- +...|+.+|+++.+++.....-..     ..+-.++...|...-. -..+.||+|+.=.+
T Consensus        51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~-----~~~~~~~~~~d~~~l~-fedESFdiVIdkGt  123 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAK-----ERPEMQMVEMDMDQLV-FEDESFDIVIDKGT  123 (482)
T ss_pred             eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcccc-----CCcceEEEEecchhcc-CCCcceeEEEecCc
Confidence            7999999998888877774 567899999999999887754321     3467788888865543 34688999886443


Q ss_pred             CCCCCCcccCCc----hHHHHHHHHcCcCCCCcEEEEe
Q 025141          185 DPIEGGPCYKLY----TKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       185 ~~~~~~p~~~L~----t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ......+...++    -...+.. +.+.|+++|+++.-
T Consensus       124 lDal~~de~a~~~~~~v~~~~~e-Vsrvl~~~gk~~sv  160 (482)
T KOG2352|consen  124 LDALFEDEDALLNTAHVSNMLDE-VSRVLAPGGKYISV  160 (482)
T ss_pred             cccccCCchhhhhhHHhhHHHhh-HHHHhccCCEEEEE
Confidence            211111111222    2245566 68999999986543

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.98  E-value=0.09  Score=48.12  Aligned_cols=110  Identities=18%  Similarity=0.161  Sum_probs=62.0

Q ss_pred             CCCeEEEEeccchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .|+++||+|.|.|..+..+.. .|...+++.+|.+|.+-++...-.........+-|..=+..|-.. + ...+.|++|+
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~-l-p~ad~ytl~i  190 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLS-L-PAADLYTLAI  190 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccC-C-Cccceeehhh
Confidence            588999999999988776655 355678999999998766654432211000011122222222111 1 1236688766


Q ss_pred             Ec-CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +- ---+.  +....++  ..++. +-..++|||.+++-
T Consensus       191 ~~~eLl~d--~~ek~i~--~~ie~-lw~l~~~gg~lViv  224 (484)
T COG5459         191 VLDELLPD--GNEKPIQ--VNIER-LWNLLAPGGHLVIV  224 (484)
T ss_pred             hhhhhccc--cCcchHH--HHHHH-HHHhccCCCeEEEE
Confidence            53 22121  1111232  36677 68899999988764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.85  E-value=0.24  Score=43.95  Aligned_cols=103  Identities=17%  Similarity=0.267  Sum_probs=61.5

Q ss_pred             CeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-cc-----CCCCC-------CCeEEEEcchHHH
Q 025141          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NK-----EAFSD-------PRLELVINDARAE  168 (257)
Q Consensus       104 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~-----~~~~~-------~rv~i~~~Da~~~  168 (257)
                      ++|.+||+|.  +.++..+++. + -+|+++|.+++.++.++++... ..     .....       .+++. ..|..+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~   78 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVS-G-FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA   78 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence            5799999983  4455666654 3 4799999999999988765321 00     00000       12221 2232222


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      +    ..-|+|+...++..       -...+++.. +.+.++|+.+++++..+
T Consensus        79 ~----~~aD~Vi~avpe~~-------~~k~~~~~~-l~~~~~~~~il~~~tSt  119 (288)
T PRK09260         79 V----ADADLVIEAVPEKL-------ELKKAVFET-ADAHAPAECYIATNTST  119 (288)
T ss_pred             h----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCCC
Confidence            2    45699998776421       113466777 67788888888777643

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=93.65  E-value=0.22  Score=46.60  Aligned_cols=66  Identities=23%  Similarity=0.299  Sum_probs=56.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCC-eEEEEcchHHHHhc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-LELVINDARAELES  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~r-v~i~~~Da~~~l~~  171 (257)
                      ..+.-|.|+.||.|-.+.-+++..  ++|++-|++|++++..+.+.+++.   -+|. ++++..||..|++.
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~~Flr~  314 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAKDFLRQ  314 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHHHHhhc
Confidence            455678899999999998888753  899999999999999999998875   3455 99999999999974

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.51  E-value=0.28  Score=44.88  Aligned_cols=34  Identities=29%  Similarity=0.595  Sum_probs=24.9

Q ss_pred             CCCeEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~  136 (257)
                      ..++||+||+|+ |+. +..|++ .++.+++.||-|.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence            567899999985 343 444444 5788999999985

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.41  E-value=0.21  Score=41.83  Aligned_cols=44  Identities=23%  Similarity=0.215  Sum_probs=35.5

Q ss_pred             cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 025141           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS  144 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~  144 (257)
                      ...+..-|||--+|+|+++.++.+..  .+..++|++++..++|++
T Consensus       188 ~t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  188 STNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             hhccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence            34567889999999999999999863  689999999999999975

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.36  E-value=0.25  Score=42.61  Aligned_cols=83  Identities=20%  Similarity=0.275  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEeccchHHHH--HHHhcCCCcEEEEE--ECCHHHHHHHHhhhhhccCCCCCCCeEEEE
Q 025141           87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELVI  162 (257)
Q Consensus        87 ~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~V--Eid~~vi~~a~~~~~~~~~~~~~~rv~i~~  162 (257)
                      +|.+-+-++|..+..+.++||++|+|.=+.-+  .+++ .+ ++||+|  |+++++.++++.           ++++++.
T Consensus         9 ~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~-~g-A~VtVVap~i~~el~~l~~~-----------~~i~~~~   75 (223)
T PRK05562          9 IYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLK-KG-CYVYILSKKFSKEFLDLKKY-----------GNLKLIK   75 (223)
T ss_pred             HhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHh-CC-CEEEEEcCCCCHHHHHHHhC-----------CCEEEEe
Confidence            45544444566666778999999999777543  3334 33 578877  888888766542           4566665


Q ss_pred             cchHHHHhcCCCceeEEEEcCCC
Q 025141          163 NDARAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       163 ~Da~~~l~~~~~~fDvIi~D~~~  185 (257)
                      .+...   ..-..+++|+....+
T Consensus        76 r~~~~---~dl~g~~LViaATdD   95 (223)
T PRK05562         76 GNYDK---EFIKDKHLIVIATDD   95 (223)
T ss_pred             CCCCh---HHhCCCcEEEECCCC
Confidence            44321   111457777776443

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=93.23  E-value=2.3  Score=38.05  Aligned_cols=89  Identities=20%  Similarity=0.194  Sum_probs=54.0

Q ss_pred             CeEEEEeccch--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       104 ~~VL~IG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++|.+||+|.-  .++..+.+.....+|+++|.+++..+.+++. ..        ... ...+..+.+    +..|+|++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~--------~~~-~~~~~~~~~----~~aDvVii   72 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GL--------GDR-VTTSAAEAV----KGADLVIL   72 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CC--------Cce-ecCCHHHHh----cCCCEEEE
Confidence            68999998863  3445555432224899999999887777642 11        001 122322333    45799998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      -.+..         ...++++. +...++++.+++
T Consensus        73 avp~~---------~~~~v~~~-l~~~l~~~~iv~   97 (307)
T PRK07502         73 CVPVG---------ASGAVAAE-IAPHLKPGAIVT   97 (307)
T ss_pred             CCCHH---------HHHHHHHH-HHhhCCCCCEEE
Confidence            86531         12456676 567788887664

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.04  E-value=0.13  Score=41.64  Aligned_cols=76  Identities=14%  Similarity=0.157  Sum_probs=52.9

Q ss_pred             HHHHHHHHhhcCCCC-CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH
Q 025141           89 HESLVHPALLHHPNP-KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA  167 (257)
Q Consensus        89 ~e~l~~~~l~~~~~~-~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~  167 (257)
                      .|.+.+.-.++..++ .+.+|||.|+|-+...++++. ...-++||++|-.+..+|-+.-..+   -..+.++...|..+
T Consensus        58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g---~~k~trf~RkdlwK  133 (199)
T KOG4058|consen   58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG---CAKSTRFRRKDLWK  133 (199)
T ss_pred             HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh---cccchhhhhhhhhh
Confidence            355544422223333 689999999999999988864 5678999999999999887643221   23567777777655


Q ss_pred             H
Q 025141          168 E  168 (257)
Q Consensus       168 ~  168 (257)
                      +
T Consensus       134 ~  134 (199)
T KOG4058|consen  134 V  134 (199)
T ss_pred             c
Confidence            4

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.04  E-value=0.65  Score=42.14  Aligned_cols=94  Identities=17%  Similarity=0.285  Sum_probs=54.9

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEEC---CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDI---DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEi---d~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      ..++||++|+|+ |.++.++++..+. +|++++.   +++-.+.+++. ....       +.....|..+ .+ ....+|
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~-Ga~~-------v~~~~~~~~~-~~-~~~~~d  240 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL-GATY-------VNSSKTPVAE-VK-LVGEFD  240 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc-CCEE-------ecCCccchhh-hh-hcCCCC
Confidence            567999998754 3356667776664 7999886   67777777763 2110       1000112111 11 235689


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +||--...            ...+.. ..+.|+++|.+++-.
T Consensus       241 ~vid~~g~------------~~~~~~-~~~~l~~~G~~v~~G  269 (355)
T cd08230         241 LIIEATGV------------PPLAFE-ALPALAPNGVVILFG  269 (355)
T ss_pred             EEEECcCC------------HHHHHH-HHHHccCCcEEEEEe
Confidence            88754321            123455 567899999887643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.95  E-value=0.38  Score=40.61  Aligned_cols=34  Identities=32%  Similarity=0.446  Sum_probs=24.6

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID  135 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid  135 (257)
                      ..++||++|+|+ |+.....+...++.+++.+|-|
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            567999999985 4433333334578899999988

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK11524 putative methyltransferase; Provisional

Probab=92.91  E-value=0.32  Score=43.27  Aligned_cols=55  Identities=15%  Similarity=0.027  Sum_probs=44.2

Q ss_pred             HHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 025141           91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (257)
Q Consensus        91 ~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (257)
                      ++..+-.+...+..-|||--+|+|+++..+.+..  .+..++|++++..++|++.+.
T Consensus       197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHH
Confidence            3333333344667889999999999999988863  689999999999999999874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=92.84  E-value=0.43  Score=40.69  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=24.9

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID  135 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid  135 (257)
                      ...+|+++|+|+ |+.....+...++.+++.+|.|
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            567999999985 4443333334578899999999

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.41  E-value=0.23  Score=40.77  Aligned_cols=127  Identities=16%  Similarity=0.125  Sum_probs=73.4

Q ss_pred             CCeEEEEeccchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hcCCCceeEEE
Q 025141          103 PKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVII  180 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-~~~~~~fDvIi  180 (257)
                      .++||++|+|--+++--+.. ..+...|..-|-+++.++-.++-.-.+.. ..-.+..+..-+-..-. ...+.+||+|+
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~-s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA-SSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc-cccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            58999999997776654444 45567999999999999988876543310 01122222211111111 12245899998


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F  242 (257)
                      ..-.--.      .-+.....+. ++..|+|.|..++.  +|   .+.+.+..+.+...++-
T Consensus       109 aADClFf------dE~h~sLvdt-Ik~lL~p~g~Al~f--sP---RRg~sL~kF~de~~~~g  158 (201)
T KOG3201|consen  109 AADCLFF------DEHHESLVDT-IKSLLRPSGRALLF--SP---RRGQSLQKFLDEVGTVG  158 (201)
T ss_pred             eccchhH------HHHHHHHHHH-HHHHhCcccceeEe--cC---cccchHHHHHHHHHhce
Confidence            7521000      0112334454 79999999986554  23   34556666666666553

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.40  E-value=0.78  Score=41.98  Aligned_cols=98  Identities=14%  Similarity=0.109  Sum_probs=58.0

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvI  179 (257)
                      ..++||++|+|. |.++.++++..+..+|++++.+++-.+.++++ ...      .-+.....|..+.++. ..+.+|+|
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~i~~~~~~g~d~v  263 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GAT------ATVNAGDPNAVEQVRELTGGGVDYA  263 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CCc------eEeCCCchhHHHHHHHHhCCCCCEE
Confidence            457899988643 33455666766655799999999999988764 211      1111112233333433 23468988


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +--...     +       +.++. +.+.|+++|.++.-.
T Consensus       264 id~~G~-----~-------~~~~~-~~~~l~~~G~iv~~G  290 (371)
T cd08281         264 FEMAGS-----V-------PALET-AYEITRRGGTTVTAG  290 (371)
T ss_pred             EECCCC-----h-------HHHHH-HHHHHhcCCEEEEEc
Confidence            743211     1       23344 456789999887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=92.38  E-value=2.1  Score=40.24  Aligned_cols=103  Identities=18%  Similarity=0.249  Sum_probs=58.3

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-----------
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-----------  170 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-----------  170 (257)
                      ++|.+||+|--+  ++..+++. + -+|+++|+|++.++..++-.           +.+...+..+.++           
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~-G-~~V~~~D~~~~~v~~l~~g~-----------~~~~e~~l~~~l~~~~~~g~l~~~   70 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASR-Q-KQVIGVDINQHAVDTINRGE-----------IHIVEPDLDMVVKTAVEGGYLRAT   70 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhC-C-CEEEEEeCCHHHHHHHHCCC-----------CCcCCCCHHHHHHHHhhcCceeee
Confidence            579999998544  34445553 3 48999999999988654321           0111111111110           


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCc-hHHHHHHHHcCcCCCCcEEEEecC
Q 025141          171 SRKESYDVIIGDLADPIEGGPCYKLY-TKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       171 ~~~~~fDvIi~D~~~~~~~~p~~~L~-t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ...+.-|+||+..+.|........+. -.+..+. +.+.|++|-+++..+.
T Consensus        71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVI~~ST  120 (415)
T PRK11064         71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKS-IAPVLKKGDLVILEST  120 (415)
T ss_pred             cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHH-HHHhCCCCCEEEEeCC
Confidence            01135799999887653211111222 2345566 6788998887776654

>PF14314 Methyltrans_Mon: Virus-capping methyltransferase

Probab=92.34  E-value=0.41  Score=47.48  Aligned_cols=146  Identities=14%  Similarity=0.066  Sum_probs=82.2

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEE---EEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc------------
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVV---MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND------------  164 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~---~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D------------  164 (257)
                      ...+..+|..|=|+|+++..+++..+..++.   ..|++.....-+.-.-|-.-....+.+-+++..|            
T Consensus       320 ~i~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~  399 (675)
T PF14314_consen  320 NIKYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDP  399 (675)
T ss_pred             CCCcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCc
Confidence            4466889999999999999999987666664   4555554433322111100000112233333322            


Q ss_pred             -hHHHHh----cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025141          165 -ARAELE----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (257)
Q Consensus       165 -a~~~l~----~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~  239 (257)
                       -.+|..    +..-++|+|++|+--..   .....--..-++..+.+.|+++|.++..+--.. ...  .-..++..+.
T Consensus       400 ~TW~YF~~l~~~~~~~idLiv~DmEV~d---~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~-l~~--~~~~il~~lg  473 (675)
T PF14314_consen  400 ETWKYFVSLKKQHNLSIDLIVMDMEVRD---DSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTR-LLS--PDYNILDLLG  473 (675)
T ss_pred             cHHHHHHHHHhhcCCcccEEEEeceecC---hHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhh-hhc--chhhHHHHHH
Confidence             123332    23468999999985211   100010112223324568899999998762211 111  1226788899


Q ss_pred             hhCCceEEEeec
Q 025141          240 QVFKCGCCALFS  251 (257)
Q Consensus       240 ~~F~~v~~~~~~  251 (257)
                      ..|+.|..+.++
T Consensus       474 ~~F~~V~l~qT~  485 (675)
T PF14314_consen  474 RYFKSVELVQTQ  485 (675)
T ss_pred             hhcCceEEEECC
Confidence            999999998873

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.30  E-value=0.92  Score=41.26  Aligned_cols=99  Identities=18%  Similarity=0.256  Sum_probs=59.0

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CC-Ccee
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~-~~fD  177 (257)
                      .+.++||+.|+|. |..+.++++..+..+|++++.+++-.+.++++ ..      +.-+.....|..+.+.. .. ..+|
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d  247 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGAD  247 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCC
Confidence            3468999998643 33455666766655799999999988888763 21      11111122344444433 22 4589


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+ |...    .+       +.++. ..+.|+++|.+++-.
T Consensus       248 ~vi-d~~g----~~-------~~~~~-~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       248 VVI-DAVG----RP-------ETYKQ-AFYARDLAGTVVLVG  276 (358)
T ss_pred             EEE-ECCC----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence            887 4331    11       23444 456899999988643

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=92.19  E-value=0.19  Score=45.27  Aligned_cols=107  Identities=18%  Similarity=0.256  Sum_probs=64.3

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc-----C--------------------------
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-----E--------------------------  151 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-----~--------------------------  151 (257)
                      +.+||+=|||.|.++..++....  .+-+-|.+--|+-. ..+ -++.     .                          
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~-S~F-iLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P  226 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLIC-SSF-ILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP  226 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHH-HHH-HHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence            56899999999999999988643  33343554444321 111 1100     0                          


Q ss_pred             ----C---CCCCCeEEEEcchHHHHhcCC--CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          152 ----A---FSDPRLELVINDARAELESRK--ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       152 ----~---~~~~rv~i~~~Da~~~l~~~~--~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                          .   -.....++-.||..+......  +.||+|+...|-..  .  ..  -.|+++. +.+.|+|||+.+ |.||
T Consensus       227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a--~N--ileYi~t-I~~iLk~GGvWi-NlGP  297 (369)
T KOG2798|consen  227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--A--HN--ILEYIDT-IYKILKPGGVWI-NLGP  297 (369)
T ss_pred             cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--h--HH--HHHHHHH-HHHhccCCcEEE-eccc
Confidence                0   011233445677766655432  57999998866211  1  11  2488998 799999999876 6654

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.18  E-value=0.79  Score=40.89  Aligned_cols=86  Identities=19%  Similarity=0.284  Sum_probs=52.7

Q ss_pred             CCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +.++||++|+| -|.++.++++..+...|.++|.+++-++.++++.-.+      +.         +   .....+|+|+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~------~~---------~---~~~~g~Dvvi  205 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLD------PE---------K---DPRRDYRAIY  205 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccC------hh---------h---ccCCCCCEEE
Confidence            46789999864 3445667777767666888899887777666431111      10         0   0134689887


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                       |...    .+       ..+.. +.+.|+++|.+++-
T Consensus       206 -d~~G----~~-------~~~~~-~~~~l~~~G~iv~~  230 (308)
T TIGR01202       206 -DASG----DP-------SLIDT-LVRRLAKGGEIVLA  230 (308)
T ss_pred             -ECCC----CH-------HHHHH-HHHhhhcCcEEEEE
Confidence             4331    11       23445 46789999998853

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=92.14  E-value=0.24  Score=45.85  Aligned_cols=102  Identities=19%  Similarity=0.204  Sum_probs=70.2

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE-
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG-  181 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~-  181 (257)
                      ..+++++|||-|...+++.... .+.++++++++.-+..+........   .+.+-.++..|..+-. ..+..||.+-. 
T Consensus       111 ~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~---l~~k~~~~~~~~~~~~-fedn~fd~v~~l  185 (364)
T KOG1269|consen  111 GSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAY---LDNKCNFVVADFGKMP-FEDNTFDGVRFL  185 (364)
T ss_pred             cccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHH---hhhhcceehhhhhcCC-CCccccCcEEEE
Confidence            4479999999999999998875 4689999999888777776543221   2334445666654432 23578997754 


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      |..-.   .|    .....|++ +.+.++|||++++
T Consensus       186 d~~~~---~~----~~~~~y~E-i~rv~kpGG~~i~  213 (364)
T KOG1269|consen  186 EVVCH---AP----DLEKVYAE-IYRVLKPGGLFIV  213 (364)
T ss_pred             eeccc---CC----cHHHHHHH-HhcccCCCceEEe
Confidence            33221   22    24577888 7999999999986

>TIGR00936 ahcY adenosylhomocysteinase

Probab=92.09  E-value=4.3  Score=38.19  Aligned_cols=120  Identities=11%  Similarity=0.029  Sum_probs=65.2

Q ss_pred             CCCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ...++|+++|+|.=+. ....++..+ .+|+++|.||.-...++.. .          .++.  +..+.+    ...|+|
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A~~~-G----------~~v~--~leeal----~~aDVV  254 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEAAMD-G----------FRVM--TMEEAA----KIGDIF  254 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHHHhc-C----------CEeC--CHHHHH----hcCCEE
Confidence            3578999999987543 333444444 5899999999654444321 1          1111  222223    346998


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFS  251 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~  251 (257)
                      +.-..     .  ..+.+.+     ....+++|++++ |.+.....-+.+.+.+....-+.+-+++..|..+
T Consensus       255 ItaTG-----~--~~vI~~~-----~~~~mK~Gaili-N~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~  313 (406)
T TIGR00936       255 ITATG-----N--KDVIRGE-----HFENMKDGAIVA-NIGHFDVEIDVKALEELAVEKRNVRPQVDEYILK  313 (406)
T ss_pred             EECCC-----C--HHHHHHH-----HHhcCCCCcEEE-EECCCCceeCHHHHHHHHhhccccccceEEEEeC
Confidence            76321     1  1233322     345688888776 5554332123344444433334566777777664

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=92.01  E-value=2.9  Score=40.11  Aligned_cols=113  Identities=16%  Similarity=0.186  Sum_probs=61.7

Q ss_pred             CeEEEEeccchHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCC-------CCCeEEEEcchHHHHhcCC
Q 025141          104 KTIFIMGGGEGSTARE--ILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-------DPRLELVINDARAELESRK  173 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~-------~~rv~i~~~Da~~~l~~~~  173 (257)
                      .+|.+||+|-.+++..  ++.....-+|+++|+|++.++..++-.. .....+.       ..++++. .|..+.+    
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~i----   76 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKHV----   76 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHHH----
Confidence            3699999988776544  3333212479999999999998776421 1110000       0011111 1111111    


Q ss_pred             CceeEEEEcCCCCCCC-C-----cccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          174 ESYDVIIGDLADPIEG-G-----PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~-~-----p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      ..-|+||+..+-|... +     .+..-+-.+..+. +.+.|+++-++++.+..|
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~-i~~~l~~~~lVv~~STvp  130 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARM-IADVSKSDKIVVEKSTVP  130 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHH-HHhhCCCCcEEEEeCCCC
Confidence            3468888876544311 0     1111123466676 688898887777776443

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.96  E-value=0.57  Score=41.43  Aligned_cols=101  Identities=21%  Similarity=0.306  Sum_probs=61.9

Q ss_pred             CeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----ccCC-CCC-------CCeEEEEcchHHH
Q 025141          104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----NKEA-FSD-------PRLELVINDARAE  168 (257)
Q Consensus       104 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~~~~-~~~-------~rv~i~~~Da~~~  168 (257)
                      ++|.+||+|  ++.++..+++. + .+|+++|++++.++.+++.+..     .... ...       .++++ ..|. +-
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~-g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~   79 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVA-G-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-DD   79 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHC-C-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-HH
Confidence            479999998  56667777765 3 3899999999999765543210     0000 000       13332 2332 11


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +    +..|+|+...+..       .....++++. +.+.++|+.+++.+..
T Consensus        80 ~----~~aDlVi~av~e~-------~~~k~~~~~~-l~~~~~~~~il~s~ts  119 (282)
T PRK05808         80 L----KDADLVIEAATEN-------MDLKKKIFAQ-LDEIAKPEAILATNTS  119 (282)
T ss_pred             h----ccCCeeeeccccc-------HHHHHHHHHH-HHhhCCCCcEEEECCC
Confidence            2    4579999876531       1123578888 7888999988877654

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=91.85  E-value=2.2  Score=40.35  Aligned_cols=119  Identities=11%  Similarity=0.052  Sum_probs=63.7

Q ss_pred             CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ..++|+++|+|.=+. ....++..+ .+|+++|+|+.-...+... +          .++  .+..+.+    +..|+|+
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~-G----------~~v--~~l~eal----~~aDVVI  272 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD-G----------FRV--MTMEEAA----ELGDIFV  272 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc-C----------CEe--cCHHHHH----hCCCEEE
Confidence            578999999986443 223333344 4899999998764444321 1          111  1222333    3589987


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFS  251 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~  251 (257)
                      ....      . .+..+.    . ..+.+|+|++++ |.+..+...+...+.+....-+++-|++.-|..+
T Consensus       273 ~aTG------~-~~vI~~----~-~~~~mK~Gaili-NvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~  330 (425)
T PRK05476        273 TATG------N-KDVITA----E-HMEAMKDGAILA-NIGHFDNEIDVAALEELAVKWREIKPQVDEYTLP  330 (425)
T ss_pred             ECCC------C-HHHHHH----H-HHhcCCCCCEEE-EcCCCCCccChHHHhhcCcceeecCCCceEEEeC
Confidence            6421      1 122222    2 345788888776 6554432222333333322334556777777664

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=91.84  E-value=1.4  Score=39.25  Aligned_cols=110  Identities=18%  Similarity=0.192  Sum_probs=64.6

Q ss_pred             CCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       103 ~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++|+++|+|.  |++++.+.+......|+..|.+....+.+.+. ...     +..    ..+   .........|+||
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~-----d~~----~~~---~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVI-----DEL----TVA---GLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Ccc-----ccc----ccc---hhhhhcccCCEEE
Confidence            35789999873  55666666654445678888888777776642 111     110    011   1112235689999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCc
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC  244 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~  244 (257)
                      +..|-.         .+.+++++ +...|++|.+++ -.++-        -..+++.+++..|.
T Consensus        70 vavPi~---------~~~~~l~~-l~~~l~~g~iv~-Dv~S~--------K~~v~~a~~~~~~~  114 (279)
T COG0287          70 VAVPIE---------ATEEVLKE-LAPHLKKGAIVT-DVGSV--------KSSVVEAMEKYLPG  114 (279)
T ss_pred             EeccHH---------HHHHHHHH-hcccCCCCCEEE-ecccc--------cHHHHHHHHHhccC
Confidence            986521         25688888 677899887665 43321        13555556666544

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=91.81  E-value=0.74  Score=42.17  Aligned_cols=34  Identities=35%  Similarity=0.601  Sum_probs=24.8

Q ss_pred             CCCeEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~  136 (257)
                      ..++||++|+|+ |+. +..|++ .++.+++.||-|.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCc
Confidence            567999999985 333 444444 5788999999883

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=91.62  E-value=3.1  Score=36.43  Aligned_cols=108  Identities=21%  Similarity=0.214  Sum_probs=63.3

Q ss_pred             CCCCeEEEEeccchHHHHH---HHh-c-CCCcEEEEEECCH--------------------------HHHHHHHhhhhhc
Q 025141          101 PNPKTIFIMGGGEGSTARE---ILR-H-KTVEKVVMCDIDE--------------------------EVVEFCKSYLVVN  149 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~---l~~-~-~~~~~v~~VEid~--------------------------~vi~~a~~~~~~~  149 (257)
                      .-|..|+++|+--|+.+..   +++ + ....++.+.|.-.                          ...+..+++|...
T Consensus        73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~  152 (248)
T PF05711_consen   73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY  152 (248)
T ss_dssp             TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred             CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence            4478999999988876543   332 1 1235677776432                          1334455554422


Q ss_pred             cCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          150 KEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       150 ~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                        .+.+++++++.|+..+-+... .+++-++-+|.--   +.|     |.+.++. +..+|.|||++++..
T Consensus       153 --gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl---Yes-----T~~aLe~-lyprl~~GGiIi~DD  212 (248)
T PF05711_consen  153 --GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL---YES-----TKDALEF-LYPRLSPGGIIIFDD  212 (248)
T ss_dssp             --TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S---HHH-----HHHHHHH-HGGGEEEEEEEEESS
T ss_pred             --CCCcccEEEECCcchhhhccCCCccEEEEEEeccc---hHH-----HHHHHHH-HHhhcCCCeEEEEeC
Confidence              234679999999998888653 4678888887521   122     6788888 799999999999864

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=91.41  E-value=0.5  Score=38.71  Aligned_cols=103  Identities=16%  Similarity=0.208  Sum_probs=59.0

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCe-EEEEcchHHHHhcCCCceeEEEE
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL-ELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv-~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      .++++++|..-=-.=..++++ ++.+|..||-++--++.  ++        . .|+ ++...|..+-.+...++||.+.+
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~~--~~--------~-dr~ssi~p~df~~~~~~y~~~fD~~as   69 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQE--EF--------R-DRLSSILPVDFAKNWQKYAGSFDFAAS   69 (177)
T ss_pred             CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccCc--cc--------c-cccccccHHHHHHHHHHhhccchhhhe
Confidence            578999998766665566665 56789999987632211  10        1 122 22333433333344578998765


Q ss_pred             cCC-CCCC----CCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLA-DPIE----GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~-~~~~----~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      -.. ++..    ..|....-...-+.. ++++|||||.+.+-
T Consensus        70 ~~siEh~GLGRYGDPidp~Gdl~~m~~-i~~vLK~GG~L~l~  110 (177)
T PF03269_consen   70 FSSIEHFGLGRYGDPIDPIGDLRAMAK-IKCVLKPGGLLFLG  110 (177)
T ss_pred             echhccccccccCCCCCccccHHHHHH-HHHhhccCCeEEEE
Confidence            432 2211    122222334456666 69999999988764

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.25  E-value=2.4  Score=35.91  Aligned_cols=98  Identities=21%  Similarity=0.334  Sum_probs=59.5

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hcCCCceeE
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-~~~~~~fDv  178 (257)
                      .+..+||+.|+|+ |..+.++++..+ .+|++++.+++-.+.+++... .      .-+.....+...-+ ....+.+|+
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~-~------~~~~~~~~~~~~~~~~~~~~~~d~  204 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGA-D------HVIDYKEEDLEEELRLTGGGGADV  204 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCC-c------eeccCCcCCHHHHHHHhcCCCCCE
Confidence            4568999999986 556666777655 689999999888877765421 0      00111111222212 223467999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+......            ..... +.+.|+++|.++...
T Consensus       205 vi~~~~~~------------~~~~~-~~~~l~~~G~~v~~~  232 (271)
T cd05188         205 VIDAVGGP------------ETLAQ-ALRLLRPGGRIVVVG  232 (271)
T ss_pred             EEECCCCH------------HHHHH-HHHhcccCCEEEEEc
Confidence            98643310            23444 466889999988654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.23  E-value=2.2  Score=40.28  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=31.5

Q ss_pred             CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 025141          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKS  144 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~  144 (257)
                      ..++|+++|+|.=+. ...+++..+. +|+++|+||.-.+.|++
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~  243 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM  243 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence            578999999997443 3444454554 89999999988887776

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=91.22  E-value=1  Score=41.56  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=25.9

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~  136 (257)
                      ...+||++|||+ |+.....+...++.+++.||-|.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            567999999985 44444444446889999999885

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=91.14  E-value=0.49  Score=40.53  Aligned_cols=91  Identities=16%  Similarity=0.148  Sum_probs=56.6

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-Hh-cCCCceeEEE
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LE-SRKESYDVII  180 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-l~-~~~~~fDvIi  180 (257)
                      +-++|+||+=+...+...   .+.-.|+.+|+++.--.                   +...|..+. +. ...++||+|.
T Consensus        52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~~~~-------------------I~qqDFm~rplp~~~~e~FdvIs  109 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQHPG-------------------ILQQDFMERPLPKNESEKFDVIS  109 (219)
T ss_pred             cceEEeecccCCCCcccc---cCceeeEEeecCCCCCC-------------------ceeeccccCCCCCCcccceeEEE
Confidence            469999999755433322   23346999999874322                   334454332 11 2347899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcE-----EEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI-----FVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGi-----l~~~~  219 (257)
                      +.+--..  -| ..-..-+.++. +.+.|+|+|.     +.+-.
T Consensus       110 ~SLVLNf--VP-~p~~RG~Ml~r-~~~fL~~~g~~~~~~LFlVl  149 (219)
T PF11968_consen  110 LSLVLNF--VP-DPKQRGEMLRR-AHKFLKPPGLSLFPSLFLVL  149 (219)
T ss_pred             EEEEEee--CC-CHHHHHHHHHH-HHHHhCCCCccCcceEEEEe
Confidence            9875322  22 12334578888 7999999999     66544

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=91.10  E-value=1.1  Score=37.77  Aligned_cols=35  Identities=14%  Similarity=0.203  Sum_probs=24.4

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~  136 (257)
                      ..++||++|+|+ |+-....+...++.+++.+|-|.
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            457999999875 33333333346889999999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=91.05  E-value=0.47  Score=36.31  Aligned_cols=89  Identities=20%  Similarity=0.206  Sum_probs=59.9

Q ss_pred             cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-C-CceeEEEEcCCCCCCC
Q 025141          112 GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K-ESYDVIIGDLADPIEG  189 (257)
Q Consensus       112 G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~-~~fDvIi~D~~~~~~~  189 (257)
                      |-|..+..++++.+ .+|++++.++.-.+.++++-...       -+.....|..+.++.. + ..+|+||--..     
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~-------~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADH-------VIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----   67 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE-------EEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc-------cccccccccccccccccccccceEEEEecC-----
Confidence            45888888999877 89999999999999999863110       0111112345555542 3 47999986532     


Q ss_pred             CcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       190 ~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                             +.+.++. .-+.|+++|.+++-...
T Consensus        68 -------~~~~~~~-~~~~l~~~G~~v~vg~~   91 (130)
T PF00107_consen   68 -------SGDTLQE-AIKLLRPGGRIVVVGVY   91 (130)
T ss_dssp             -------SHHHHHH-HHHHEEEEEEEEEESST
T ss_pred             -------cHHHHHH-HHHHhccCCEEEEEEcc
Confidence                   1245566 57789999999876543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=91.00  E-value=2.7  Score=35.99  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=62.5

Q ss_pred             CCCeEEEEeccchH----HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH-HHHhcCCCce
Q 025141          102 NPKTIFIMGGGEGS----TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-AELESRKESY  176 (257)
Q Consensus       102 ~~~~VL~IG~G~G~----~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~-~~l~~~~~~f  176 (257)
                      +.+-+++..+++|.    ++..++.+....++++|-.+++-....++.+.-.+   ..+.++++++|.. +.+.. -...
T Consensus        41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~---~~~~vEfvvg~~~e~~~~~-~~~i  116 (218)
T PF07279_consen   41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG---LSDVVEFVVGEAPEEVMPG-LKGI  116 (218)
T ss_pred             cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc---ccccceEEecCCHHHHHhh-ccCC
Confidence            45678888665442    33333333234689999999888877777764322   2356799999854 45543 3679


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      |++++|.-.        +-+..++++. +  .++|.|.+++
T Consensus       117 DF~vVDc~~--------~d~~~~vl~~-~--~~~~~GaVVV  146 (218)
T PF07279_consen  117 DFVVVDCKR--------EDFAARVLRA-A--KLSPRGAVVV  146 (218)
T ss_pred             CEEEEeCCc--------hhHHHHHHHH-h--ccCCCceEEE
Confidence            999999642        1122356665 3  3777776554

The function of this family is unknown.

>cd08293 PTGR2 Prostaglandin reductase

Probab=91.00  E-value=1.2  Score=39.90  Aligned_cols=95  Identities=22%  Similarity=0.231  Sum_probs=57.8

Q ss_pred             CeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025141          104 KTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (257)
Q Consensus       104 ~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi  180 (257)
                      .+||+.|+  |.|..+.+++++.+..+|+++.-+++-.+.+++.++..      .-+.....|..+.++. .++.+|+|+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~------~vi~~~~~~~~~~i~~~~~~gvd~vi  229 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD------AAINYKTDNVAERLRELCPEGVDVYF  229 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc------EEEECCCCCHHHHHHHHCCCCceEEE
Confidence            79999985  56667777888766447999988888777776644321      1111112344444433 235699988


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                       |...    .+       . +.. +.+.|+++|.++.-
T Consensus       230 -d~~g----~~-------~-~~~-~~~~l~~~G~iv~~  253 (345)
T cd08293         230 -DNVG----GE-------I-SDT-VISQMNENSHIILC  253 (345)
T ss_pred             -ECCC----cH-------H-HHH-HHHHhccCCEEEEE
Confidence             4321    11       1 234 45679999988753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=90.97  E-value=0.82  Score=41.03  Aligned_cols=75  Identities=25%  Similarity=0.412  Sum_probs=43.4

Q ss_pred             EEEEeccchHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE----EEcchHHHHh--c--CCC
Q 025141          106 IFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL----VINDARAELE--S--RKE  174 (257)
Q Consensus       106 VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i----~~~Da~~~l~--~--~~~  174 (257)
                      ||+-|+| |++..++.+.   .+..++..+|.|+.-+-..++.+....   .++++++    +.+|.++.-+  .  ...
T Consensus         1 VLVTGa~-GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~---~~~~v~~~~~~vigDvrd~~~l~~~~~~~   76 (293)
T PF02719_consen    1 VLVTGAG-GSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF---PDPKVRFEIVPVIGDVRDKERLNRIFEEY   76 (293)
T ss_dssp             EEEETTT-SHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC-----TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred             CEEEccc-cHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc---cccCcccccCceeecccCHHHHHHHHhhc
Confidence            5666664 7876665552   234799999999998877777663211   2355654    5888877533  2  234


Q ss_pred             ceeEEEEcCC
Q 025141          175 SYDVIIGDLA  184 (257)
Q Consensus       175 ~fDvIi~D~~  184 (257)
                      +.|+|++.+.
T Consensus        77 ~pdiVfHaAA   86 (293)
T PF02719_consen   77 KPDIVFHAAA   86 (293)
T ss_dssp             T-SEEEE---
T ss_pred             CCCEEEEChh
Confidence            8999999886

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=90.81  E-value=2  Score=38.78  Aligned_cols=97  Identities=19%  Similarity=0.223  Sum_probs=57.6

Q ss_pred             CCCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025141          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD  177 (257)
                      .+.++||+.|+| .|..+.++++..+...+++++.+++-.+.++++ +..      .-+.....|..+.+..  ....+|
T Consensus       165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~i~~~~~~~~~d  237 (351)
T cd08285         165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GAT------DIVDYKNGDVVEQILKLTGGKGVD  237 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------eEecCCCCCHHHHHHHHhCCCCCc
Confidence            456899999764 233455666766666799999999888888863 211      1111112233233322  234699


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +|+-...     .       .+.+.. +.+.|+++|.++.
T Consensus       238 ~vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~  264 (351)
T cd08285         238 AVIIAGG-----G-------QDTFEQ-ALKVLKPGGTISN  264 (351)
T ss_pred             EEEECCC-----C-------HHHHHH-HHHHhhcCCEEEE
Confidence            8875322     1       133455 5678999998874

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=90.77  E-value=0.76  Score=38.32  Aligned_cols=111  Identities=25%  Similarity=0.295  Sum_probs=56.8

Q ss_pred             CeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccCC--------CCCCCeEEEEcchHHHHhcC
Q 025141          104 KTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEA--------FSDPRLELVINDARAELESR  172 (257)
Q Consensus       104 ~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~--------~~~~rv~i~~~Da~~~l~~~  172 (257)
                      .+|-++|+|==++  +..++. .+ -+|+++|+|++.++..++-. +.....        ....|+++. .|....+   
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~-~G-~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---   74 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAE-KG-HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---   74 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHH-TT-SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH---
T ss_pred             CEEEEECCCcchHHHHHHHHh-CC-CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh---
Confidence            3688898885443  334444 34 59999999999999887642 221100        012333332 3433333   


Q ss_pred             CCceeEEEEcCCCCCCC-CcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          173 KESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~-~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                       ...|++++..+.|... +.+..-+-....+. +.+.|+++-++++.+..|
T Consensus        75 -~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~-i~~~l~~~~lvV~~STvp  123 (185)
T PF03721_consen   75 -KDADVVFICVPTPSDEDGSPDLSYVESAIES-IAPVLRPGDLVVIESTVP  123 (185)
T ss_dssp             -HH-SEEEE----EBETTTSBETHHHHHHHHH-HHHHHCSCEEEEESSSSS
T ss_pred             -hccceEEEecCCCccccCCccHHHHHHHHHH-HHHHHhhcceEEEccEEE
Confidence             3579999887644311 11112223456677 688999988888876433

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=90.76  E-value=2.9  Score=37.82  Aligned_cols=112  Identities=18%  Similarity=0.306  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEeccc-hHHHHHHHhcCCC-cEEEEEECCHHHHHH-HHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025141          100 HPNPKTIFIMGGGE-GSTAREILRHKTV-EKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (257)
Q Consensus       100 ~~~~~~VL~IG~G~-G~~~~~l~~~~~~-~~v~~VEid~~vi~~-a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f  176 (257)
                      ...+++|.+||+|. |+....++...+. .++..+|++++..+- +.+.....  .+. .++++..+|-.+ +    ...
T Consensus         3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~--~~~-~~~~i~~~~~~~-~----~~a   74 (315)
T PRK00066          3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV--PFT-SPTKIYAGDYSD-C----KDA   74 (315)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc--ccc-CCeEEEeCCHHH-h----CCC
Confidence            35678999999976 5544444433333 479999998876543 33222111  112 356666555333 2    467


Q ss_pred             eEEEEcCCCCCCCCcc-cCCc--hHHHHHHHHc--CcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGPC-YKLY--TKSFYEFVVK--PRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~-~~L~--t~ef~~~~~~--~~L~pgGil~~~~  219 (257)
                      |+|++.+-.|...+.. ..|+  +...++.++.  +...|+|++++-.
T Consensus        75 divIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         75 DLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            9999876544321110 1122  2234444222  2345889876543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.60  E-value=1.4  Score=40.07  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=63.2

Q ss_pred             CCeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-----cCCC----CCCCeEEEEcchHHHHhc
Q 025141          103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAF----SDPRLELVINDARAELES  171 (257)
Q Consensus       103 ~~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~~~~----~~~rv~i~~~Da~~~l~~  171 (257)
                      -++|-+||+|  +.+++..++.. + -+|+.+|.+++..+.+++.+...     ....    ...++++. .|..+-+  
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~a-G-~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av--   81 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAH-G-LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV--   81 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence            4789999999  45566666664 4 58999999999887766543210     0000    01234433 2332222  


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       172 ~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                        ..-|+|+-..++..       -...+.|+. +.+.++|+-++..|+.
T Consensus        82 --~~aDlViEavpE~l-------~vK~~lf~~-l~~~~~~~aIlaSnTS  120 (321)
T PRK07066         82 --ADADFIQESAPERE-------ALKLELHER-ISRAAKPDAIIASSTS  120 (321)
T ss_pred             --cCCCEEEECCcCCH-------HHHHHHHHH-HHHhCCCCeEEEECCC
Confidence              45699998766421       123567777 6888888888777654

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.60  E-value=2.1  Score=37.98  Aligned_cols=37  Identities=27%  Similarity=0.385  Sum_probs=28.3

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHH
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEE  137 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~  137 (257)
                      -...+||++|+|+ |+.+.+.+...++.+++.+|-|..
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            3567999999984 666666666678899999998843

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.58  E-value=3.3  Score=37.83  Aligned_cols=132  Identities=11%  Similarity=0.080  Sum_probs=71.2

Q ss_pred             CCCCeEEEEeccchHHHH--HHHhcCCCcEEEEEECCHHHHHHHHhhhh---hccCCCC-CCCeEEEEcchHHHHhcCCC
Q 025141          101 PNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAFS-DPRLELVINDARAELESRKE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~VEid~~vi~~a~~~~~---~~~~~~~-~~rv~i~~~Da~~~l~~~~~  174 (257)
                      ....+|.+||+|.-+.+.  .+.+ .+  .++.+..+++.++..++.-.   ....... .+++.. ..|..+.+    +
T Consensus         5 ~~~mkI~IiGaGa~G~alA~~La~-~g--~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a~----~   76 (341)
T PRK12439          5 KREPKVVVLGGGSWGTTVASICAR-RG--PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEAA----N   76 (341)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHH-CC--CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHHH----h
Confidence            345689999998877543  3333 22  56777799999887776421   1100010 122332 34433333    4


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE-EecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCc
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV-TQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSY  253 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~-~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~  253 (257)
                      ..|+|++-.+.         .+.++.++. ++..++++..++ ++-+-.  ....   ..+.+.+++.++.......+.|
T Consensus        77 ~aDlVilavps---------~~~~~vl~~-i~~~l~~~~~vIsl~kGi~--~~t~---~~~se~i~~~l~~~~~~~l~GP  141 (341)
T PRK12439         77 CADVVVMGVPS---------HGFRGVLTE-LAKELRPWVPVVSLVKGLE--QGTN---MRMSQIIEEVLPGHPAGILAGP  141 (341)
T ss_pred             cCCEEEEEeCH---------HHHHHHHHH-HHhhcCCCCEEEEEEeCCc--CCCC---CcHHHHHHHHcCCCCeEEEECC
Confidence            57999987542         235678888 788898886443 332211  1111   2333445555654444445555


Q ss_pred             cc
Q 025141          254 SF  255 (257)
Q Consensus       254 ~~  255 (257)
                      +|
T Consensus       142 ~~  143 (341)
T PRK12439        142 NI  143 (341)
T ss_pred             CH
Confidence            54

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=90.51  E-value=1.2  Score=37.88  Aligned_cols=74  Identities=15%  Similarity=0.269  Sum_probs=44.6

Q ss_pred             HhhcCCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECC--HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc
Q 025141           96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES  171 (257)
Q Consensus        96 ~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid--~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~  171 (257)
                      |+....+.++||++|+|.=+.  ++.+++. + ++|++|+.+  ++..++++           ..+++++.++....   
T Consensus         2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~-g-a~VtVvsp~~~~~l~~l~~-----------~~~i~~~~~~~~~~---   65 (205)
T TIGR01470         2 PVFANLEGRAVLVVGGGDVALRKARLLLKA-G-AQLRVIAEELESELTLLAE-----------QGGITWLARCFDAD---   65 (205)
T ss_pred             CeEEEcCCCeEEEECcCHHHHHHHHHHHHC-C-CEEEEEcCCCCHHHHHHHH-----------cCCEEEEeCCCCHH---
Confidence            344445678999999986554  3455553 3 589988544  44444433           23677776664321   


Q ss_pred             CCCceeEEEEcCCC
Q 025141          172 RKESYDVIIGDLAD  185 (257)
Q Consensus       172 ~~~~fDvIi~D~~~  185 (257)
                      .-..+|+|+....+
T Consensus        66 dl~~~~lVi~at~d   79 (205)
T TIGR01470        66 ILEGAFLVIAATDD   79 (205)
T ss_pred             HhCCcEEEEECCCC
Confidence            12568998887554

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627

Probab=90.39  E-value=3.2  Score=35.46  Aligned_cols=51  Identities=14%  Similarity=0.223  Sum_probs=41.9

Q ss_pred             HHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 025141           95 PALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (257)
Q Consensus        95 ~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (257)
                      ...+.+..|-+.|+.|.|-.++.-..+.+.  .+...+|=|+..++.+++.++
T Consensus        32 ~~VL~~raPCN~LVFGLghdsllW~aLN~g--GrTvFLEEd~~~i~~~~~~~p   82 (225)
T TIGR01627        32 SDVLTRRSPCNILVFGLAHQYLMWSSLNHR--GRTVFIEEEKIMIAKAEVNPP   82 (225)
T ss_pred             HHHHHhcCCceEEEeccCcchHHHHHhcCC--CeeEEecCCHHHHHHHhhcCC
Confidence            344456678999999999999999888874  477899999999999988654

This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).

>PRK13699 putative methylase; Provisional

Probab=90.37  E-value=0.98  Score=38.93  Aligned_cols=46  Identities=15%  Similarity=0.106  Sum_probs=39.8

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (257)
                      ..+..-|||--+|+|+++..+.+..  .+..++|++++..+.+++.+.
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~  206 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLA  206 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHH
Confidence            4566789999999999999988863  589999999999999998764

>PRK10637 cysG siroheme synthase; Provisional

Probab=90.36  E-value=0.83  Score=43.55  Aligned_cols=76  Identities=16%  Similarity=0.254  Sum_probs=46.5

Q ss_pred             HHHhhcCCCCCeEEEEeccchHHHH--HHHhcCCCcEEEEE--ECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 025141           94 HPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL  169 (257)
Q Consensus        94 ~~~l~~~~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~V--Eid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l  169 (257)
                      +.|+....+.++||++|+|.=+.-+  .+++ .+ ++|++|  |+++++-+++++           .+++++..+..   
T Consensus         3 ~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~-~g-a~v~visp~~~~~~~~l~~~-----------~~i~~~~~~~~---   66 (457)
T PRK10637          3 HLPIFCQLRDRDCLLVGGGDVAERKARLLLD-AG-ARLTVNALAFIPQFTAWADA-----------GMLTLVEGPFD---   66 (457)
T ss_pred             eeceEEEcCCCEEEEECCCHHHHHHHHHHHH-CC-CEEEEEcCCCCHHHHHHHhC-----------CCEEEEeCCCC---
Confidence            3577777789999999998766532  3344 23 578877  777776555432           45666654432   


Q ss_pred             hcCCCceeEEEEcCCC
Q 025141          170 ESRKESYDVIIGDLAD  185 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~~  185 (257)
                      ...-+.+|+|+....+
T Consensus        67 ~~dl~~~~lv~~at~d   82 (457)
T PRK10637         67 ESLLDTCWLAIAATDD   82 (457)
T ss_pred             hHHhCCCEEEEECCCC
Confidence            1112456777766443

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.31  E-value=1.6  Score=38.74  Aligned_cols=102  Identities=21%  Similarity=0.321  Sum_probs=61.2

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC-------CCeEEEEcchHHH
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE  168 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~-------~rv~i~~~Da~~~  168 (257)
                      ++|.+||+|.-+  ++..+++. + .+|+++|.+++.++.+.+.....      ......       .+++.. .|. +-
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~   80 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALA-G-YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-ED   80 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HH
Confidence            679999998544  45555553 3 48999999999988765432210      000000       223332 332 22


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      +    ...|+|+.-.++..       -....+++. +.+.++|+.+++.++.+
T Consensus        81 ~----~~aD~Vieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~s~ts~  121 (292)
T PRK07530         81 L----ADCDLVIEAATEDE-------TVKRKIFAQ-LCPVLKPEAILATNTSS  121 (292)
T ss_pred             h----cCCCEEEEcCcCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCCC
Confidence            2    45799998876421       123466777 68889999888766543

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=90.25  E-value=4.4  Score=33.13  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=54.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|+.||+=+-.....-. ..+..++...|+|.+.-....+.|-.-+  ++.|         .+.......+||+|+
T Consensus        24 ~~~~~iaclstPsl~~~l~~~-~~~~~~~~Lle~D~RF~~~~~~~F~fyD--~~~p---------~~~~~~l~~~~d~vv   91 (162)
T PF10237_consen   24 LDDTRIACLSTPSLYEALKKE-SKPRIQSFLLEYDRRFEQFGGDEFVFYD--YNEP---------EELPEELKGKFDVVV   91 (162)
T ss_pred             CCCCEEEEEeCcHHHHHHHhh-cCCCccEEEEeecchHHhcCCcceEECC--CCCh---------hhhhhhcCCCceEEE
Confidence            456799999997655544331 2334689999999988664433121110  0111         111122246899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|||--.     ....+ .+-+. ++..+++++.++.-
T Consensus        92 ~DPPFl~-----~ec~~-k~a~t-i~~L~k~~~kii~~  122 (162)
T PF10237_consen   92 IDPPFLS-----EECLT-KTAET-IRLLLKPGGKIILC  122 (162)
T ss_pred             ECCCCCC-----HHHHH-HHHHH-HHHHhCccceEEEe
Confidence            9986311     11111 11233 46667887877753

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.23  E-value=1.6  Score=32.72  Aligned_cols=91  Identities=24%  Similarity=0.234  Sum_probs=55.5

Q ss_pred             EEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhcCC-CceeEEE
Q 025141          106 IFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYDVII  180 (257)
Q Consensus       106 VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~~~-~~fDvIi  180 (257)
                      |+++|+|.-+  +++.+.+ . ..+|+++|.|++.++.+++.           .+.++.+|+.+.  +++.. ++.|.|+
T Consensus         1 vvI~G~g~~~~~i~~~L~~-~-~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv   67 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKE-G-GIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV   67 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHH-T-TSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred             eEEEcCCHHHHHHHHHHHh-C-CCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence            5777876433  2333333 2 24899999999999888863           256888888654  44433 7899888


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...+..     .   +.....  ..+.+.|...+++..
T Consensus        68 ~~~~~d~-----~---n~~~~~--~~r~~~~~~~ii~~~   96 (116)
T PF02254_consen   68 ILTDDDE-----E---NLLIAL--LARELNPDIRIIARV   96 (116)
T ss_dssp             EESSSHH-----H---HHHHHH--HHHHHTTTSEEEEEE
T ss_pred             EccCCHH-----H---HHHHHH--HHHHHCCCCeEEEEE
Confidence            8765321     1   122222  245677888787765

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK15076 alpha-galactosidase; Provisional

Probab=90.22  E-value=3.3  Score=39.28  Aligned_cols=76  Identities=22%  Similarity=0.277  Sum_probs=44.2

Q ss_pred             CeEEEEeccc-hHHHH---HHH--hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhcCCCce
Q 025141          104 KTIFIMGGGE-GSTAR---EIL--RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESY  176 (257)
Q Consensus       104 ~~VL~IG~G~-G~~~~---~l~--~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~-~~Da~~~l~~~~~~f  176 (257)
                      .+|.+||+|+ |....   .++  ......+|+.+|+|++..+.++..+...... .....++. ..|..+-++    .-
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~-~~~~~~i~~ttD~~eal~----dA   76 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAES-LGASAKITATTDRREALQ----GA   76 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHhC----CC
Confidence            4799999999 54332   222  1122348999999999888665554321100 12334555 566555443    35


Q ss_pred             eEEEEcCC
Q 025141          177 DVIIGDLA  184 (257)
Q Consensus       177 DvIi~D~~  184 (257)
                      |+|+...-
T Consensus        77 DfVv~ti~   84 (431)
T PRK15076         77 DYVINAIQ   84 (431)
T ss_pred             CEEeEeee
Confidence            88887664

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=90.19  E-value=3.5  Score=36.89  Aligned_cols=98  Identities=19%  Similarity=0.200  Sum_probs=55.8

Q ss_pred             CCCCeEEEEeccch-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025141          101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~fD  177 (257)
                      ....+||++|+|+= ..+.++++..+..+|++++.+++-.+.+++. ...      .-+.....+ .+.+.. . ...+|
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~-~~~~~~~~~~~~~d  233 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GAD------FVINSGQDD-VQEIRELTSGAGAD  233 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEcCCcch-HHHHHHHhCCCCCC
Confidence            34689999976432 2345566666654599999999988888764 211      111111122 222222 2 24699


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+-....            ...+.. ..+.|+++|.+++-.
T Consensus       234 ~vid~~g~------------~~~~~~-~~~~l~~~G~~v~~g  262 (339)
T cd08239         234 VAIECSGN------------TAARRL-ALEAVRPWGRLVLVG  262 (339)
T ss_pred             EEEECCCC------------HHHHHH-HHHHhhcCCEEEEEc
Confidence            98844321            122334 456799999888643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02494 adenosylhomocysteinase

Probab=90.16  E-value=4.5  Score=38.75  Aligned_cols=119  Identities=9%  Similarity=0.043  Sum_probs=64.3

Q ss_pred             CCCeEEEEeccchHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ..++|+++|+|.=+.. ...++..+ .+|+++|.|+.-...+... .          ..+.  +..+.+    ...|+|+
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~~-G----------~~vv--~leEal----~~ADVVI  314 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALME-G----------YQVL--TLEDVV----SEADIFV  314 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHhc-C----------Ceec--cHHHHH----hhCCEEE
Confidence            5789999999864432 22233344 4899999998654444321 0          0111  222333    3579998


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHH-HHHhhhCCceEEEeec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY-NTLRQVFKCGCCALFS  251 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~-~~l~~~F~~v~~~~~~  251 (257)
                      .....       .++...+     ..+.|++||+++ |.+.++..-+...+.+.. -.-+++.|++..|..+
T Consensus       315 ~tTGt-------~~vI~~e-----~L~~MK~GAiLi-NvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~~~  373 (477)
T PLN02494        315 TTTGN-------KDIIMVD-----HMRKMKNNAIVC-NIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFP  373 (477)
T ss_pred             ECCCC-------ccchHHH-----HHhcCCCCCEEE-EcCCCCCccCHHHHhhccccceeccCCCceEEEcC
Confidence            73211       1233333     345689999886 665432222333333221 1123567888888875

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=90.03  E-value=3.3  Score=36.28  Aligned_cols=96  Identities=17%  Similarity=0.177  Sum_probs=55.7

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDv  178 (257)
                      +.++||++|+|+ |.++.++++..+..+|++++.+++-.+.++++- ... .. +.      .+..+.+..  ....+|+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~G-a~~-~i-~~------~~~~~~~~~~~~~~g~d~  190 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFG-ATA-LA-EP------EVLAERQGGLQNGRGVDV  190 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC-CcE-ec-Cc------hhhHHHHHHHhCCCCCCE
Confidence            467899998743 224456666666556999999999888888742 110 00 11      111122222  2346998


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+--...            ...++. +.+.|+++|.++.-.
T Consensus       191 vid~~G~------------~~~~~~-~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       191 ALEFSGA------------TAAVRA-CLESLDVGGTAVLAG  218 (280)
T ss_pred             EEECCCC------------hHHHHH-HHHHhcCCCEEEEec
Confidence            8743211            123444 467899999888644

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=90.01  E-value=2.2  Score=35.30  Aligned_cols=100  Identities=17%  Similarity=0.289  Sum_probs=58.2

Q ss_pred             eEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh--c----cCCCC-------CCCeEEEEcchHHHH
Q 025141          105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV--N----KEAFS-------DPRLELVINDARAEL  169 (257)
Q Consensus       105 ~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~--~----~~~~~-------~~rv~i~~~Da~~~l  169 (257)
                      +|.+||+|.=+  ++..++.. + .+|+.+|.+++.++.+++++..  .    ...+.       -.++++ ..|.    
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~-G-~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl----   73 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA-G-YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDL----   73 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT-T-SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSG----
T ss_pred             CEEEEcCCHHHHHHHHHHHhC-C-CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCH----
Confidence            58899997654  34444443 4 5999999999999998887542  1    01111       123332 2232    


Q ss_pred             hcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ... ...|+|+=..++..       -.-+++|++ +.+.+.|+-+++.|+.
T Consensus        74 ~~~-~~adlViEai~E~l-------~~K~~~~~~-l~~~~~~~~ilasnTS  115 (180)
T PF02737_consen   74 EEA-VDADLVIEAIPEDL-------ELKQELFAE-LDEICPPDTILASNTS  115 (180)
T ss_dssp             GGG-CTESEEEE-S-SSH-------HHHHHHHHH-HHCCS-TTSEEEE--S
T ss_pred             HHH-hhhheehhhccccH-------HHHHHHHHH-HHHHhCCCceEEecCC
Confidence            112 26799887655321       124688999 8999999999999864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK10458 DNA cytosine methylase; Provisional

Probab=89.93  E-value=4.2  Score=38.97  Aligned_cols=129  Identities=16%  Similarity=0.151  Sum_probs=77.4

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-------------
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-------------  169 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-------------  169 (257)
                      .-+++++-||.|++..-+... +...|-++|+|+...+.-+.++..      +|....+.+|..+.-             
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~  160 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDITLSHKEGVSDEEAA  160 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhCccccccccchhhhh
Confidence            358999999999998887664 456788999999999998887631      123333445544432             


Q ss_pred             ---hcCCCceeEEEEcCCC-CCC-CC----------------cccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCCh
Q 025141          170 ---ESRKESYDVIIGDLAD-PIE-GG----------------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHT  228 (257)
Q Consensus       170 ---~~~~~~fDvIi~D~~~-~~~-~~----------------p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~  228 (257)
                         .......|+++.-+|- +.+ .+                +...| -.++++. + +.++|.-+++=|+..--.....
T Consensus       161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~L-f~~~~ri-i-~~~kPk~fvlENV~gl~s~~~g  237 (467)
T PRK10458        161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTL-FFDVARI-I-DAKRPAIFVLENVKNLKSHDKG  237 (467)
T ss_pred             hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccH-HHHHHHH-H-HHhCCCEEEEeCcHhhhccccc
Confidence               1112368998887762 221 01                00112 2466664 3 4678886666454211001233


Q ss_pred             HHHHHHHHHHhhh
Q 025141          229 EVFSCIYNTLRQV  241 (257)
Q Consensus       229 ~~~~~~~~~l~~~  241 (257)
                      ..+..+++.|.+.
T Consensus       238 ~~f~~i~~~L~~l  250 (467)
T PRK10458        238 KTFRIIMQTLDEL  250 (467)
T ss_pred             HHHHHHHHHHHHc
Confidence            5677888888764

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=89.81  E-value=2  Score=38.09  Aligned_cols=100  Identities=19%  Similarity=0.314  Sum_probs=58.5

Q ss_pred             CeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh--------c-cCCCC-------CCCeEEEEcch
Q 025141          104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV--------N-KEAFS-------DPRLELVINDA  165 (257)
Q Consensus       104 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~--------~-~~~~~-------~~rv~i~~~Da  165 (257)
                      ++|.+||+|  ++.++..++++ + .+|+++|.+++.++.+++....        . .....       ..+++.. .|.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFART-G-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence            689999999  34455666554 3 4899999999999876553211        0 00000       0122221 222


Q ss_pred             HHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       166 ~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                       +-+    ...|+|+...+...       -...++++. +.+.++|+.+++.+.
T Consensus        81 -~~~----~~aDlVieav~e~~-------~~k~~~~~~-l~~~~~~~~il~S~t  121 (291)
T PRK06035         81 -ESL----SDADFIVEAVPEKL-------DLKRKVFAE-LERNVSPETIIASNT  121 (291)
T ss_pred             -HHh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEEcC
Confidence             212    34699998765321       113567777 677888888777554

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=89.77  E-value=0.53  Score=38.63  Aligned_cols=107  Identities=18%  Similarity=0.249  Sum_probs=63.7

Q ss_pred             EEEeccchHHHHHHHhcCC-CcEEEEEECCH--HHHHHHH---hhhhhccCCCCCCCeEE-EEcchHHHHhc---CCCce
Q 025141          107 FIMGGGEGSTAREILRHKT-VEKVVMCDIDE--EVVEFCK---SYLVVNKEAFSDPRLEL-VINDARAELES---RKESY  176 (257)
Q Consensus       107 L~IG~G~G~~~~~l~~~~~-~~~v~~VEid~--~vi~~a~---~~~~~~~~~~~~~rv~i-~~~Da~~~l~~---~~~~f  176 (257)
                      |.+|=|.-+.+..++++.+ ..++++--.|.  ++.+...   +++..    +....+++ +.-||.+.-..   ...+|
T Consensus         1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~----L~~~g~~V~~~VDat~l~~~~~~~~~~F   76 (166)
T PF10354_consen    1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE----LRELGVTVLHGVDATKLHKHFRLKNQRF   76 (166)
T ss_pred             CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH----HhhcCCccccCCCCCcccccccccCCcC
Confidence            6789999999999988644 45666554444  4433322   22221    22344443 34566554332   34789


Q ss_pred             eEEEEcCCCCCCC---Cc----ccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEG---GP----CYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~---~p----~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |.|+.+-|.....   ..    ...-+-..||+. ++++|+++|.+.+-
T Consensus        77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~S-a~~~L~~~G~IhVT  124 (166)
T PF10354_consen   77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKS-ASQLLKPDGEIHVT  124 (166)
T ss_pred             CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            9999998853210   00    011123689999 79999999976654

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=89.71  E-value=0.094  Score=46.95  Aligned_cols=79  Identities=18%  Similarity=0.123  Sum_probs=60.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .....|.|+=+|-|+++.-.+-+.+++.|.++|.+|..++..|+.+..+.   ...|..++.+|-|.-  ......|.|.
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~---V~~r~~i~~gd~R~~--~~~~~AdrVn  267 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANN---VMDRCRITEGDNRNP--KPRLRADRVN  267 (351)
T ss_pred             cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcc---hHHHHHhhhcccccc--Cccccchhee
Confidence            34578899999999998833334578899999999999999999987663   356777888886542  2346788888


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      +-+-
T Consensus       268 LGLl  271 (351)
T KOG1227|consen  268 LGLL  271 (351)
T ss_pred             eccc
Confidence            8764

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=89.67  E-value=1.3  Score=41.76  Aligned_cols=76  Identities=22%  Similarity=0.292  Sum_probs=43.8

Q ss_pred             eEEEEeccchHHH-HH---HHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhcCCCcee
Q 025141          105 TIFIMGGGEGSTA-RE---ILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYD  177 (257)
Q Consensus       105 ~VL~IG~G~G~~~-~~---l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~-~~Da~~~l~~~~~~fD  177 (257)
                      +|.+||+|+-+.+ ..   ++..  ....+|..+|+|++.++...+........ .....++. ..|..+-+    ...|
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~-~~~~~~I~~ttD~~eal----~~AD   76 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEE-LGAPLKIEATTDRREAL----DGAD   76 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHh-cCCCeEEEEeCCHHHHh----cCCC
Confidence            6899999994433 22   3311  12248999999999888766544211000 11223443 55654444    3469


Q ss_pred             EEEEcCCC
Q 025141          178 VIIGDLAD  185 (257)
Q Consensus       178 vIi~D~~~  185 (257)
                      +|+.....
T Consensus        77 ~Vi~ai~~   84 (423)
T cd05297          77 FVINTIQV   84 (423)
T ss_pred             EEEEeeEe
Confidence            98888763

linked to 3D####ucture

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=89.49  E-value=2.7  Score=37.28  Aligned_cols=97  Identities=22%  Similarity=0.332  Sum_probs=58.4

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDv  178 (257)
                      ....+||+.|+|. |..+.++++..+ .+|++++.+++..+.++++ ...      .-+.....+....++. ..+.+|+
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~D~  235 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GAD------EVLNSLDDSPKDKKAAGLGGGFDV  235 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CCC------EEEcCCCcCHHHHHHHhcCCCceE
Confidence            3457899987653 666777777655 5799999999988888663 211      1111111222232322 3457998


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+.....            .+.++. +.+.|+++|.++.-
T Consensus       236 vid~~g~------------~~~~~~-~~~~l~~~G~~v~~  262 (338)
T cd08254         236 IFDFVGT------------QPTFED-AQKAVKPGGRIVVV  262 (338)
T ss_pred             EEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence            8743211            134556 57889999998864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=89.47  E-value=1.7  Score=35.79  Aligned_cols=31  Identities=32%  Similarity=0.444  Sum_probs=23.0

Q ss_pred             eEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCH
Q 025141          105 TIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       105 ~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~  136 (257)
                      +|+++|+|+ |+. +..+++ .+..+++.+|-|.
T Consensus         1 ~VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence            589999984 443 444444 5788999999986

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=89.43  E-value=1.2  Score=37.59  Aligned_cols=37  Identities=24%  Similarity=0.359  Sum_probs=29.6

Q ss_pred             CCCCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHH
Q 025141          100 HPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEV  138 (257)
Q Consensus       100 ~~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~v  138 (257)
                      .+.+++||++|.- +|....+++..  ..+|+++|+.|.+
T Consensus        42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~   79 (254)
T COG4017          42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFM   79 (254)
T ss_pred             ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHH
Confidence            4678999999974 56667777764  4699999999987

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=89.30  E-value=1.6  Score=39.72  Aligned_cols=124  Identities=19%  Similarity=0.234  Sum_probs=79.5

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-C-ceeEEE
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVII  180 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-~-~fDvIi  180 (257)
                      ..+++++-+|.|++..-+... +..-+.++|+||..++.-+.+++.         -.++..|..++....- . .+|+|+
T Consensus         3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli   72 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI   72 (328)
T ss_pred             CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence            357999999999988776664 456788999999999999988753         3556677666554322 2 789999


Q ss_pred             EcCCC-CCC--------CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCC-hHHHHHHHHHHhhh
Q 025141          181 GDLAD-PIE--------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSH-TEVFSCIYNTLRQV  241 (257)
Q Consensus       181 ~D~~~-~~~--------~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~-~~~~~~~~~~l~~~  241 (257)
                      --+|- +.+        ..+-..| ..++.+.  -..++|.-.++=|+  |+.... ...+..+.+.|.+.
T Consensus        73 gGpPCQ~FS~aG~r~~~~D~R~~L-~~~~~r~--I~~~~P~~fv~ENV--~gl~~~~~~~~~~i~~~L~~~  138 (328)
T COG0270          73 GGPPCQDFSIAGKRRGYDDPRGSL-FLEFIRL--IEQLRPKFFVLENV--KGLLSSKGQTFDEIKKELEEL  138 (328)
T ss_pred             eCCCCcchhhcCcccCCcCcccee-eHHHHHH--HHhhCCCEEEEecC--chHHhcCchHHHHHHHHHHHc
Confidence            88872 111        1222233 4677775  35788843333232  332221 34667777777765

>PTZ00117 malate dehydrogenase; Provisional

Probab=89.29  E-value=11  Score=34.00  Aligned_cols=109  Identities=22%  Similarity=0.294  Sum_probs=58.3

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVI-NDARAELESRKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~i~~-~Da~~~l~~~~~~fDv  178 (257)
                      +..+|.+||+|. |.....++...+..++..+|++++..+ +... +... ........++.. +|-. -+    ..-|+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l----~~ADi   76 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYE-DI----KDSDV   76 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHH-Hh----CCCCE
Confidence            456899999988 776666555444457999999987654 2221 1111 111222345543 4532 22    34599


Q ss_pred             EEEcCCCCCCCCcc-cCC------chHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPC-YKL------YTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~-~~L------~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+...-.+...+.. ..+      .-+++.+. +.+ ..|++++++-.
T Consensus        77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~-i~~-~~p~a~vivvs  122 (319)
T PTZ00117         77 VVITAGVQRKEEMTREDLLTINGKIMKSVAES-VKK-YCPNAFVICVT  122 (319)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH-HCCCeEEEEec
Confidence            99876432211110 011      12355555 444 46899766543

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.27  E-value=1.6  Score=38.96  Aligned_cols=101  Identities=12%  Similarity=0.303  Sum_probs=62.5

Q ss_pred             CeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC-------CCeEEEEcchHHH
Q 025141          104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE  168 (257)
Q Consensus       104 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~-------~rv~i~~~Da~~~  168 (257)
                      ++|-+||+|  +..++..+++. + -+|+.+|.+++.++.+++.....      ......       .|+++ ..|. +-
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~   81 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARA-G-VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD   81 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH
Confidence            589999999  55567666664 4 58999999999998877654211      000100       12222 2332 22


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcC-CCCcEEEEecC
Q 025141          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAG  220 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L-~pgGil~~~~~  220 (257)
                      +    ...|+|+-..++..       -...+.|.. +.+.+ +|+.+++.|+.
T Consensus        82 ~----~~~d~ViEav~E~~-------~~K~~l~~~-l~~~~~~~~~il~snTS  122 (286)
T PRK07819         82 F----ADRQLVIEAVVEDE-------AVKTEIFAE-LDKVVTDPDAVLASNTS  122 (286)
T ss_pred             h----CCCCEEEEecccCH-------HHHHHHHHH-HHHhhCCCCcEEEECCC
Confidence            2    45689988766421       123566777 67777 78888887754

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=89.25  E-value=1.8  Score=37.42  Aligned_cols=35  Identities=31%  Similarity=0.399  Sum_probs=26.7

Q ss_pred             CCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~  136 (257)
                      ...+||++|+| .|+...+.+...++.+++.+|-|.
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            45789999997 455555555557889999999875

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=89.24  E-value=2.1  Score=41.35  Aligned_cols=104  Identities=14%  Similarity=0.281  Sum_probs=64.7

Q ss_pred             CCCeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----c-cCCCC-------CCCeEEEEcchH
Q 025141          102 NPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----N-KEAFS-------DPRLELVINDAR  166 (257)
Q Consensus       102 ~~~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~-~~~~~-------~~rv~i~~~Da~  166 (257)
                      +-++|-+||+|  +++++..+++. + -.|+++|.+++.++.++++...     . .+.+.       -.|++.. .|..
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~a-G-~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~   82 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQA-G-HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA   82 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence            45789999999  44566776664 3 4899999999999987665431     1 00000       0133333 2322


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       167 ~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      . +    ..-|+||-..++..       -....+|.. +.+.++|+.+++.|+.+
T Consensus        83 ~-~----~~aDlViEav~E~~-------~vK~~vf~~-l~~~~~~~ailasntSt  124 (507)
T PRK08268         83 D-L----ADCDLVVEAIVERL-------DVKQALFAQ-LEAIVSPDCILATNTSS  124 (507)
T ss_pred             H-h----CCCCEEEEcCcccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence            1 2    35799998877532       113456677 67778888888877643

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=89.14  E-value=11  Score=33.80  Aligned_cols=109  Identities=22%  Similarity=0.337  Sum_probs=55.0

Q ss_pred             CeEEEEeccc-hHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          104 KTIFIMGGGE-GSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       104 ~~VL~IG~G~-G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++|.+||+|. |......+...+. .++..+|++++..+....-+.... ........+...|..+ +    ...|+|++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l----~~aDIVIi   74 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C----KDADIVVI   74 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h----CCCCEEEE
Confidence            3799999976 3333333333333 389999999887554333221110 0112334555455332 2    56899999


Q ss_pred             cCCCCCCCCcc-cCCc--hHHHHHHH---HcCcCCCCcEEEEec
Q 025141          182 DLADPIEGGPC-YKLY--TKSFYEFV---VKPRLNPEGIFVTQA  219 (257)
Q Consensus       182 D~~~~~~~~p~-~~L~--t~ef~~~~---~~~~L~pgGil~~~~  219 (257)
                      -...|...+.. ..|+  +.+.++.+   ++ .-.|+|++++-.
T Consensus        75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~-~~~~~~~vivvs  117 (306)
T cd05291          75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIK-ASGFDGIFLVAS  117 (306)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEec
Confidence            87644321111 1122  12333331   23 367889876543

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=89.10  E-value=3.7  Score=33.60  Aligned_cols=119  Identities=13%  Similarity=0.159  Sum_probs=58.4

Q ss_pred             CCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ...|+++++|.|.=+  .++.+... + .+|+++|+||.-  ..+....         -.++.  +..+-+    ...|+
T Consensus        21 l~Gk~vvV~GYG~vG~g~A~~lr~~-G-a~V~V~e~DPi~--alqA~~d---------Gf~v~--~~~~a~----~~adi   81 (162)
T PF00670_consen   21 LAGKRVVVIGYGKVGKGIARALRGL-G-ARVTVTEIDPIR--ALQAAMD---------GFEVM--TLEEAL----RDADI   81 (162)
T ss_dssp             -TTSEEEEE--SHHHHHHHHHHHHT-T--EEEEE-SSHHH--HHHHHHT---------T-EEE---HHHHT----TT-SE
T ss_pred             eCCCEEEEeCCCcccHHHHHHHhhC-C-CEEEEEECChHH--HHHhhhc---------CcEec--CHHHHH----hhCCE
Confidence            467899999998755  34444443 4 699999999943  3333321         11222  222222    46798


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFS  251 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~  251 (257)
                      |+...-      . ....+.+.|+.     || +|.++.|.++.+..-+...+.+....-.++=|++..|..+
T Consensus        82 ~vtaTG------~-~~vi~~e~~~~-----mk-dgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~~v~~y~l~  141 (162)
T PF00670_consen   82 FVTATG------N-KDVITGEHFRQ-----MK-DGAILANAGHFDVEIDVDALEANAVEREEVRPQVDRYTLP  141 (162)
T ss_dssp             EEE-SS------S-SSSB-HHHHHH-----S--TTEEEEESSSSTTSBTHHHHHTCTSEEEEEETTEEEEEET
T ss_pred             EEECCC------C-ccccCHHHHHH-----hc-CCeEEeccCcCceeEeeccccccCcEEEEcCCCeeEEEeC
Confidence            887532      1 23446666665     44 5666678876533223333222211122345677777664

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.02  E-value=4.1  Score=36.11  Aligned_cols=102  Identities=22%  Similarity=0.271  Sum_probs=60.3

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh------ccCCCC--------CCCeEEEEcchHH
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFS--------DPRLELVINDARA  167 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~------~~~~~~--------~~rv~i~~~Da~~  167 (257)
                      ++|.+||+|.-+  ++..+++. + .+|+.+|.+++.++.+++....      ....+.        ..++++ ..|..+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~   80 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH-G-FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE   80 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence            579999998543  44444443 3 4899999999998887765310      000010        023332 244333


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      .+    +.-|+||...+...       -...+++++ +.+.++++-+++.+..
T Consensus        81 a~----~~aDlVieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~sntS  121 (287)
T PRK08293         81 AV----KDADLVIEAVPEDP-------EIKGDFYEE-LAKVAPEKTIFATNSS  121 (287)
T ss_pred             Hh----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCCEEEECcc
Confidence            33    34699998766321       123566777 6777887877766643

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=88.92  E-value=1.4  Score=37.73  Aligned_cols=35  Identities=31%  Similarity=0.453  Sum_probs=24.1

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~  136 (257)
                      ..++|+++|||+ |+.....+...++.+++.+|-|.
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            457999999984 44333333345788999997664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=88.90  E-value=7.8  Score=35.37  Aligned_cols=133  Identities=20%  Similarity=0.231  Sum_probs=77.6

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh---hhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY---LVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~---~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+|-+||.|+-+++...+-......|+..-.+++.++..+..   -....+....+++. ...|..+-+    +..|+|+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~-at~Dl~~a~----~~ad~iv   76 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLK-ATTDLAEAL----DGADIIV   76 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccc-cccCHHHHH----hcCCEEE
Confidence            579999999877654433322225899999999998876553   11111111222332 335555554    3489999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCccc
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~  255 (257)
                      +-.|+         .+.++..++ ++..|+++-.++.-.-  + + .+.....+.+.+++..|.-.....+.|||
T Consensus        77 ~avPs---------~~~r~v~~~-l~~~l~~~~~iv~~sK--G-i-e~~t~~l~seii~e~l~~~~~~vLSGPs~  137 (329)
T COG0240          77 IAVPS---------QALREVLRQ-LKPLLLKDAIIVSATK--G-L-EPETGRLLSEIIEEELPDNPIAVLSGPSF  137 (329)
T ss_pred             EECCh---------HHHHHHHHH-HhhhccCCCeEEEEec--c-c-cCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence            88653         234677777 6667777665553221  1 1 11223455566777777655667788776

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=88.80  E-value=2.5  Score=35.65  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=24.4

Q ss_pred             CCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECC
Q 025141          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID  135 (257)
Q Consensus       102 ~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid  135 (257)
                      ..++|+++|+|+-+  ++..+++ .++.+++.+|.|
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLAR-AGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCC
Confidence            46789999998533  3444444 577899999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=88.79  E-value=2.1  Score=36.01  Aligned_cols=35  Identities=17%  Similarity=0.380  Sum_probs=24.6

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~  136 (257)
                      ...+||++|+|+ |+-..+.+...++.+++.+|-|.
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            457899999985 33333333346889999998774

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=88.71  E-value=4.4  Score=37.19  Aligned_cols=132  Identities=12%  Similarity=0.171  Sum_probs=70.0

Q ss_pred             eEEEEeccchHHHHHHHhcCCC--------cEEEEEEC-----CHHHHHHHHhhhhh----ccCCCCCCCeEEEEcchHH
Q 025141          105 TIFIMGGGEGSTAREILRHKTV--------EKVVMCDI-----DEEVVEFCKSYLVV----NKEAFSDPRLELVINDARA  167 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~--------~~v~~VEi-----d~~vi~~a~~~~~~----~~~~~~~~rv~i~~~Da~~  167 (257)
                      +|.+||+|..+.+....-....        .+|+....     +++..+..++....    ++-. ..++++. ..|..+
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~-Lp~~i~a-t~dl~e   78 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIK-LPANLVA-VPDLVE   78 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCc-CCCCeEE-ECCHHH
Confidence            5789999998876543221112        47888876     66777766553221    1100 1234444 356555


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025141          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC  247 (257)
Q Consensus       168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  247 (257)
                      .++    .-|+|++-.++.         .-+++.+. ++..|+++-.++ .. +.+..........+.+.+++.++ ...
T Consensus        79 al~----~ADiIIlAVPs~---------~i~~vl~~-l~~~l~~~~~iV-s~-tKGie~~~~~~~~~se~i~e~l~-~~~  141 (342)
T TIGR03376        79 AAK----GADILVFVIPHQ---------FLEGICKQ-LKGHVKPNARAI-SC-IKGLEVSKDGVKLLSDIIEEELG-IPC  141 (342)
T ss_pred             HHh----cCCEEEEECChH---------HHHHHHHH-HHhhcCCCCEEE-EE-eCCcccCCCcCccHHHHHHHHhC-CCe
Confidence            553    458998876532         23577787 688887654443 32 12211110123344455555553 244


Q ss_pred             EeecCccc
Q 025141          248 ALFSSYSF  255 (257)
Q Consensus       248 ~~~~~~~~  255 (257)
                      ...+.|+|
T Consensus       142 ~~lsGP~~  149 (342)
T TIGR03376       142 GVLSGANL  149 (342)
T ss_pred             EEeeCcch
Confidence            44566665

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=88.69  E-value=1.4  Score=40.90  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=25.7

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID  135 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid  135 (257)
                      ...++||++|+|+ |+.....+...++.+++.+|-|
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3567999999984 4444444444678899999998

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=88.67  E-value=2.2  Score=37.91  Aligned_cols=102  Identities=18%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             CCeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-----hcc-CCCCC-------CCeEEEEcchHH
Q 025141          103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-----VNK-EAFSD-------PRLELVINDARA  167 (257)
Q Consensus       103 ~~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-----~~~-~~~~~-------~rv~i~~~Da~~  167 (257)
                      -++|.+||+|  +..++..+++. + .+|+++|.+++.++.+++.+.     +.. .....       .+++ ...|. +
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~   79 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAA-G-MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E   79 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence            3689999998  44566666664 3 589999999999886655432     100 00000       1122 22232 2


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      -+    +.-|+|+...++.    +   -....+++. +.+.++|+.+++.++.
T Consensus        80 ~~----~~aD~Vieav~e~----~---~~k~~v~~~-l~~~~~~~~il~s~tS  120 (295)
T PLN02545         80 EL----RDADFIIEAIVES----E---DLKKKLFSE-LDRICKPSAILASNTS  120 (295)
T ss_pred             Hh----CCCCEEEEcCccC----H---HHHHHHHHH-HHhhCCCCcEEEECCC
Confidence            22    3469999887642    1   113456676 5777888887776653

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=88.46  E-value=2.1  Score=33.69  Aligned_cols=31  Identities=32%  Similarity=0.568  Sum_probs=21.8

Q ss_pred             eEEEEeccc-hH-HHHHHHhcCCCcEEEEEECCH
Q 025141          105 TIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       105 ~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~  136 (257)
                      +||++|+|+ |+ ++..|++ .+..+++.+|-|.
T Consensus         1 ~VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLAR-SGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCC
Confidence            589999973 33 3444444 5778999999873

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=88.41  E-value=0.71  Score=37.66  Aligned_cols=104  Identities=20%  Similarity=0.197  Sum_probs=54.7

Q ss_pred             CCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-C--CCCCeEEEEcchHHH---------
Q 025141          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-F--SDPRLELVINDARAE---------  168 (257)
Q Consensus       102 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-~--~~~rv~i~~~Da~~~---------  168 (257)
                      +|.+|+++|.|.=+ .+.++++.-+ .+++..|..++..+..+......-.. +  ...+-.   -|-..|         
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~   94 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYES   94 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhHH
Confidence            57899999998654 3555555445 58999999999888777654321000 0  000001   111111         


Q ss_pred             -HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          169 -LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       169 -l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                       +.+.-..+|+||....-+....  ..|.|++..+.     |+|+-+++
T Consensus        95 ~f~~~i~~~d~vI~~~~~~~~~~--P~lvt~~~~~~-----m~~gsvIv  136 (168)
T PF01262_consen   95 NFAEFIAPADIVIGNGLYWGKRA--PRLVTEEMVKS-----MKPGSVIV  136 (168)
T ss_dssp             HHHHHHHH-SEEEEHHHBTTSS-----SBEHHHHHT-----SSTTEEEE
T ss_pred             HHHHHHhhCcEEeeecccCCCCC--CEEEEhHHhhc-----cCCCceEE
Confidence             1111257899998654322223  37889886664     55665554

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=88.35  E-value=1.6  Score=41.83  Aligned_cols=129  Identities=12%  Similarity=0.102  Sum_probs=72.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ..-++|+|+.+|.|+++..|...+    |.+.-.-|.   .....++.   .++..=+- +.-|=-+-+.+-+.+||+|=
T Consensus       364 ~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~---~~~ntL~v---IydRGLIG-~yhDWCE~fsTYPRTYDLlH  432 (506)
T PF03141_consen  364 GRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPV---SGPNTLPV---IYDRGLIG-VYHDWCEAFSTYPRTYDLLH  432 (506)
T ss_pred             cceeeeeeecccccHHHHHhccCC----ceEEEeccc---CCCCcchh---hhhcccch-hccchhhccCCCCcchhhee
Confidence            345899999999999999988753    333322121   11111110   01000011 11122222334568999997


Q ss_pred             EcC-CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecC
Q 025141          181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSS  252 (257)
Q Consensus       181 ~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~  252 (257)
                      .+. ++... ..   ---...+-+ +.|+|+|+|.+++..       ....+..+.+.+++.--++..+..+.
T Consensus       433 A~~lfs~~~-~r---C~~~~illE-mDRILRP~G~~iiRD-------~~~vl~~v~~i~~~lrW~~~~~d~e~  493 (506)
T PF03141_consen  433 ADGLFSLYK-DR---CEMEDILLE-MDRILRPGGWVIIRD-------TVDVLEKVKKIAKSLRWEVRIHDTED  493 (506)
T ss_pred             hhhhhhhhc-cc---ccHHHHHHH-hHhhcCCCceEEEec-------cHHHHHHHHHHHHhCcceEEEEecCC
Confidence            764 33221 11   122456666 799999999999863       34455666666666666777766654

; GO: 0008168 methyltransferase activity

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.33  E-value=3.5  Score=36.86  Aligned_cols=101  Identities=18%  Similarity=0.328  Sum_probs=56.9

Q ss_pred             CeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCC--------CCeEEEEcchHHHHhcCC
Q 025141          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD--------PRLELVINDARAELESRK  173 (257)
Q Consensus       104 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~--------~rv~i~~~Da~~~l~~~~  173 (257)
                      ++|.+||+|.  +.++..+++. + .+|+++|.+++.++.+++...........        .+++. ..|..+.+    
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~-g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~----   77 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARK-G-LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV----   77 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh----
Confidence            6899999984  4455666553 3 48999999999998877643210000000        11222 23332222    


Q ss_pred             CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +..|+|+...+...       -...+++.. +...++++-+++.+.
T Consensus        78 ~~aDlVi~av~~~~-------~~~~~v~~~-l~~~~~~~~ii~s~t  115 (311)
T PRK06130         78 SGADLVIEAVPEKL-------ELKRDVFAR-LDGLCDPDTIFATNT  115 (311)
T ss_pred             ccCCEEEEeccCcH-------HHHHHHHHH-HHHhCCCCcEEEECC
Confidence            35699998765321       113456666 566666666665444

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=88.31  E-value=2.8  Score=40.86  Aligned_cols=80  Identities=24%  Similarity=0.368  Sum_probs=57.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----CCC
Q 025141          102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RKE  174 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~----~~~  174 (257)
                      ..|+||+-|+| |++..++.+.   .+.+++..+|.|+.-+..-++.+...   +...++.++.+|.++.-+-    .+-
T Consensus       249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~  324 (588)
T COG1086         249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH  324 (588)
T ss_pred             CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence            56888888876 7766555441   24579999999999888877766432   1357889999999886432    234


Q ss_pred             ceeEEEEcCCC
Q 025141          175 SYDVIIGDLAD  185 (257)
Q Consensus       175 ~fDvIi~D~~~  185 (257)
                      +.|+|++.+..
T Consensus       325 kvd~VfHAAA~  335 (588)
T COG1086         325 KVDIVFHAAAL  335 (588)
T ss_pred             CCceEEEhhhh
Confidence            69999998863

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=88.18  E-value=5.8  Score=35.37  Aligned_cols=96  Identities=16%  Similarity=0.263  Sum_probs=56.4

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +..+||+.|+|+ |..+.++++..+..++++++.+++..+.+++. ...      .-+.....+..... .....+|+|+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~~------~vi~~~~~~~~~~~-~~~~~vd~vl  236 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GAD------ETVNLARDPLAAYA-ADKGDFDVVF  236 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCC------EEEcCCchhhhhhh-ccCCCccEEE
Confidence            568899988765 55666777766655789999988888877764 211      00000011112221 1224599987


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .-...            ...++. +.+.|+++|.++.-
T Consensus       237 d~~g~------------~~~~~~-~~~~L~~~G~~v~~  261 (339)
T cd08232         237 EASGA------------PAALAS-ALRVVRPGGTVVQV  261 (339)
T ss_pred             ECCCC------------HHHHHH-HHHHHhcCCEEEEE
Confidence            54221            123455 56788999988853

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=88.13  E-value=3.3  Score=37.15  Aligned_cols=96  Identities=19%  Similarity=0.153  Sum_probs=53.9

Q ss_pred             CeEEEEeccc-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhh--hhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          104 KTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSY--LVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       104 ~~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~--~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+|+++|+|+ |+ ++..|.+ .+ ..|+.+.-.++-++..++.  +....   ......+.. ..  ......+.||+|
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~-~G-~~V~lv~r~~~~~~~i~~~~Gl~i~~---~g~~~~~~~-~~--~~~~~~~~~D~v   74 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLAR-AG-LPVRLILRDRQRLAAYQQAGGLTLVE---QGQASLYAI-PA--ETADAAEPIHRL   74 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHh-CC-CCeEEEEechHHHHHHhhcCCeEEee---CCcceeecc-CC--CCcccccccCEE
Confidence            4799999874 33 4555555 33 4799999887666655542  22111   011111110 00  001123579999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ++-.-         ...+.+.++. ++..+.++..++.
T Consensus        75 iv~vK---------~~~~~~al~~-l~~~l~~~t~vv~  102 (305)
T PRK05708         75 LLACK---------AYDAEPAVAS-LAHRLAPGAELLL  102 (305)
T ss_pred             EEECC---------HHhHHHHHHH-HHhhCCCCCEEEE
Confidence            88642         1225677888 7899999986653

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=88.05  E-value=1  Score=36.59  Aligned_cols=76  Identities=16%  Similarity=0.181  Sum_probs=43.9

Q ss_pred             HHHHHhhcCCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 025141           92 LVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL  169 (257)
Q Consensus        92 l~~~~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l  169 (257)
                      |.++|+....+.++||++|+|.=+.  ++.+++. + .+|++|  +|+..+..++.          +.+++..   +.|-
T Consensus         2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~-g-a~V~VI--sp~~~~~l~~l----------~~i~~~~---~~~~   64 (157)
T PRK06719          2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDT-G-AFVTVV--SPEICKEMKEL----------PYITWKQ---KTFS   64 (157)
T ss_pred             CcccceEEEcCCCEEEEECCCHHHHHHHHHHHhC-C-CEEEEE--cCccCHHHHhc----------cCcEEEe---cccC
Confidence            3346777778899999999986554  3445553 3 588888  45544333321          1333322   2222


Q ss_pred             hcCCCceeEEEEcCC
Q 025141          170 ESRKESYDVIIGDLA  184 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~  184 (257)
                      ...-..+|+|+....
T Consensus        65 ~~dl~~a~lViaaT~   79 (157)
T PRK06719         65 NDDIKDAHLIYAATN   79 (157)
T ss_pred             hhcCCCceEEEECCC
Confidence            222366888887543

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.92  E-value=7  Score=35.17  Aligned_cols=128  Identities=13%  Similarity=0.133  Sum_probs=67.8

Q ss_pred             eEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhh---hh-hccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY---LV-VNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       105 ~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~---~~-~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      +|.+||+|.=+.  +..+.+. + .+|+.++.+++.++..++.   .. +.+.. ..++++.. .|..+.+   .+..|+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~-g-~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~-~~~~i~~~-~~~~~~~---~~~~Dl   74 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSK-K-ISVNLWGRNHTTFESINTKRKNLKYLPTCH-LPDNISVK-SAIDEVL---SDNATC   74 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHC-C-CeEEEEecCHHHHHHHHHcCCCcccCCCCc-CCCCeEEe-CCHHHHH---hCCCCE
Confidence            589999886543  3344443 3 4799999999887766652   11 11110 11233332 3433332   246899


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcC-cCCCCcEEEE-ecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCcc
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVT-QAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYS  254 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGil~~-~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~  254 (257)
                      |++-.++         ....+.++. ++. .++++..++. +-|-.    ... .....+.+++.+|.-.....+.++
T Consensus        75 iiiavks---------~~~~~~l~~-l~~~~l~~~~~vv~~~nGi~----~~~-~~~~~~~l~~~~~~~~~~~~~Gp~  137 (326)
T PRK14620         75 IILAVPT---------QQLRTICQQ-LQDCHLKKNTPILICSKGIE----KSS-LKFPSEIVNEILPNNPIAILSGPS  137 (326)
T ss_pred             EEEEeCH---------HHHHHHHHH-HHHhcCCCCCEEEEEEcCee----CCC-CccHHHHHHHHcCCCceEeecCCc
Confidence            9987643         224577787 676 8888874443 22211    100 111234455667654444444444

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=87.87  E-value=6.2  Score=36.70  Aligned_cols=102  Identities=20%  Similarity=0.217  Sum_probs=58.6

Q ss_pred             CCeEEEEe--ccchHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE----cchHHHHhc-C-
Q 025141          103 PKTIFIMG--GGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELES-R-  172 (257)
Q Consensus       103 ~~~VL~IG--~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~----~Da~~~l~~-~-  172 (257)
                      ..+||++|  ++-|..+.++++..  +..+|+++|.+++-++.+++.++.... .......++.    .|..+.++. + 
T Consensus       176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~t~  254 (410)
T cd08238         176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMELTG  254 (410)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHHhC
Confidence            47899997  34566677777753  335899999999999999986432100 0000111111    234444433 2 


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ...+|+|+.....     +       ..+.. ..+.|+++|.+++.
T Consensus       255 g~g~D~vid~~g~-----~-------~~~~~-a~~~l~~~G~~v~~  287 (410)
T cd08238         255 GQGFDDVFVFVPV-----P-------ELVEE-ADTLLAPDGCLNFF  287 (410)
T ss_pred             CCCCCEEEEcCCC-----H-------HHHHH-HHHHhccCCeEEEE
Confidence            3469988865321     1       23444 45678888865543

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=87.79  E-value=4.8  Score=36.36  Aligned_cols=92  Identities=15%  Similarity=0.161  Sum_probs=53.7

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+.++||++|+|+=+ ++..++++ .+..+|+++|.+++=.+.+++ +..      +    ....+   ...  ...+|+
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~------~----~~~~~---~~~--~~g~d~  225 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE------T----YLIDD---IPE--DLAVDH  225 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc------e----eehhh---hhh--ccCCcE
Confidence            346899999975433 33455553 344689999999988888775 211      0    01111   111  124898


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+ |....    +    .+...+.. ..+.|+++|.+++-
T Consensus       226 vi-D~~G~----~----~~~~~~~~-~~~~l~~~G~iv~~  255 (341)
T cd08237         226 AF-ECVGG----R----GSQSAINQ-IIDYIRPQGTIGLM  255 (341)
T ss_pred             EE-ECCCC----C----ccHHHHHH-HHHhCcCCcEEEEE
Confidence            87 44321    1    01234555 56789999998764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=87.77  E-value=1.4  Score=35.57  Aligned_cols=105  Identities=18%  Similarity=0.237  Sum_probs=55.2

Q ss_pred             cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCc
Q 025141           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKES  175 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~  175 (257)
                      ...-+..||++|.|.|-+=.++....+..+|.+.|-.   ++   .|-.-     .-|.-.++.+|+++-+..   ...+
T Consensus        25 v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~---l~---~hp~~-----~P~~~~~ilGdi~~tl~~~~~~g~~   93 (160)
T PF12692_consen   25 VAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA---LA---CHPSS-----TPPEEDLILGDIRETLPALARFGAG   93 (160)
T ss_dssp             TTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--------S-GGG--------GGGEEES-HHHHHHHHHHH-S-
T ss_pred             hcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeee---cc---cCCCC-----CCchHheeeccHHHHhHHHHhcCCc
Confidence            3444578999999999998888877667899999863   11   11110     113447899999998865   2234


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      --++=.|.-.+.   +.....+..++.-.+..+|.|||+++-
T Consensus        94 a~laHaD~G~g~---~~~d~a~a~~lspli~~~la~gGi~vS  132 (160)
T PF12692_consen   94 AALAHADIGTGD---KEKDDATAAWLSPLIAPVLAPGGIMVS  132 (160)
T ss_dssp             EEEEEE----S----HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             eEEEEeecCCCC---cchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence            445555543322   222233334444446899999999874

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=87.72  E-value=6.5  Score=30.76  Aligned_cols=85  Identities=14%  Similarity=0.232  Sum_probs=49.4

Q ss_pred             CCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhcCCCcee
Q 025141          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~-Da~~~l~~~~~~fD  177 (257)
                      .+.++||+||+|+-+  .+..++.. +..+|+.+.-+.+-.+...+.++       ...++++.- |..+.+    .++|
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~~~~~~~----~~~D   77 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLEDLEEAL----QEAD   77 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGGGHCHHH----HTES
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHHHHHHHH----hhCC
Confidence            467899999997543  23444444 67789999998765444333331       234555433 322232    5699


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHH
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEF  203 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~  203 (257)
                      +||...+.+.      ...+.+.+..
T Consensus        78 ivI~aT~~~~------~~i~~~~~~~   97 (135)
T PF01488_consen   78 IVINATPSGM------PIITEEMLKK   97 (135)
T ss_dssp             EEEE-SSTTS------TSSTHHHHTT
T ss_pred             eEEEecCCCC------cccCHHHHHH
Confidence            9998876432      2445555444

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=87.57  E-value=2.9  Score=37.80  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=33.4

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (257)
                      .+..+||++|+|. |..+.++++..+. +|++++.+++-.+.+++.
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~  209 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF  209 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh
Confidence            3467999999855 4456667776664 799999999988888763

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=87.38  E-value=5  Score=35.84  Aligned_cols=96  Identities=16%  Similarity=0.205  Sum_probs=54.7

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDv  178 (257)
                      +..+||+.|+|. |..+.++++..+...+.+++.+++-.+.+++. ..      +.-+.....+..+.++.  ..+.+|+
T Consensus       167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~i~~~~~~~~~d~  239 (347)
T cd05278         167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GA------TDIINPKNGDIVEQILELTGGRGVDC  239 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CC------cEEEcCCcchHHHHHHHHcCCCCCcE
Confidence            457888866542 44556666765544788888888877777753 11      11111122233333432  2356998


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      |+....     .       .+.++. +.+.|+++|.++.
T Consensus       240 vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~  265 (347)
T cd05278         240 VIEAVG-----F-------EETFEQ-AVKVVRPGGTIAN  265 (347)
T ss_pred             EEEccC-----C-------HHHHHH-HHHHhhcCCEEEE
Confidence            874321     1       133455 5678899998874

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK08618 ornithine cyclodeaminase; Validated

Probab=87.37  E-value=17  Score=32.91  Aligned_cols=115  Identities=19%  Similarity=0.296  Sum_probs=64.8

Q ss_pred             CcEEEEEecCCeeEE-EEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEEC
Q 025141           58 QDIALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDI  134 (257)
Q Consensus        58 ~~i~v~~~~~~g~~L-~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEi  134 (257)
                      +.+.+++.+. |+.+ .+||...+.-+..-  ...+. .-.+..++++++++||+|.=+-  +..++...+..+|.+++.
T Consensus        85 g~i~l~d~~t-G~p~a~~d~~~lT~~RTaa--~sala-~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r  160 (325)
T PRK08618         85 GTVILSDFET-GEVLAILDGTYLTQIRTGA--LSGVA-TKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR  160 (325)
T ss_pred             EEEEEEeCCC-CceEEEEccchhhhhhHHH--HHHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence            4566776654 4433 56777655433211  01111 2233456789999999985542  233334456789999999


Q ss_pred             CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025141          135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       135 d~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~  185 (257)
                      +++-.+...+.+...   + ..++. ...|..+.+    ...|+|++-.+.
T Consensus       161 ~~~~a~~~~~~~~~~---~-~~~~~-~~~~~~~~~----~~aDiVi~aT~s  202 (325)
T PRK08618        161 TFEKAYAFAQEIQSK---F-NTEIY-VVNSADEAI----EEADIIVTVTNA  202 (325)
T ss_pred             CHHHHHHHHHHHHHh---c-CCcEE-EeCCHHHHH----hcCCEEEEccCC
Confidence            987765544443211   0 11222 246665555    357999987653

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=87.34  E-value=2.1  Score=42.17  Aligned_cols=105  Identities=18%  Similarity=0.194  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-----hH----HHH
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-----AR----AEL  169 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D-----a~----~~l  169 (257)
                      ..+.+.||+|||..|+....+.+..++ .-|++|||-|.-        +.       |++.-+++|     ++    .++
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------p~-------~~c~t~v~dIttd~cr~~l~k~l  106 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------PI-------PNCDTLVEDITTDECRSKLRKIL  106 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------cC-------CccchhhhhhhHHHHHHHHHHHH
Confidence            345678999999999999988886444 457899996532        11       222222222     22    233


Q ss_pred             hcCCCceeEEEEcCCCCCCCC-c----ccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          170 ESRKESYDVIIGDLADPIEGG-P----CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~~~~~~~-p----~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      ...  +-|+|++|........ .    ....++...++. +-..|.-||.+++....+
T Consensus       107 ~t~--~advVLhDgapnVg~~w~~DA~~q~~L~l~al~L-A~~~l~~~g~fvtkvfrs  161 (780)
T KOG1098|consen  107 KTW--KADVVLHDGAPNVGGNWVQDAFQQACLTLRALKL-ATEFLAKGGTFVTKVFRS  161 (780)
T ss_pred             HhC--CCcEEeecCCCccchhHHHHHHHhhHHHHHHHHH-HHHHHHhcCccccccccC
Confidence            322  3499999986322100 0    012223445555 567899999998876443

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=87.20  E-value=12  Score=33.97  Aligned_cols=77  Identities=19%  Similarity=0.344  Sum_probs=43.3

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVI-NDARAELESRKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~i~~-~Da~~~l~~~~~~fDv  178 (257)
                      +.++|.+||+|. |.....++...+...+..+|++++..+ ++. +.+. .........++.. +|. +-+    ..-|+
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~~-ld~~~~~~~~~~~~~I~~~~d~-~~l----~~aDi   77 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GKA-LDISHSNVIAGSNSKVIGTNNY-EDI----AGSDV   77 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HHH-HHHHhhhhccCCCeEEEECCCH-HHh----CCCCE
Confidence            346899999987 444444444445457999999998642 111 1110 0011223445664 663 222    45699


Q ss_pred             EEEcCCC
Q 025141          179 IIGDLAD  185 (257)
Q Consensus       179 Ii~D~~~  185 (257)
                      |+.....
T Consensus        78 VI~tag~   84 (321)
T PTZ00082         78 VIVTAGL   84 (321)
T ss_pred             EEECCCC
Confidence            9986643

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=86.58  E-value=1.5  Score=39.45  Aligned_cols=73  Identities=14%  Similarity=0.220  Sum_probs=49.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----CCCc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKES  175 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-----~~~~  175 (257)
                      ....+|..||.|+..+...+.+.|  .+|++|||||.-+.+-+-.+....   .-|+    ++|...|+..     ...-
T Consensus        62 g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA~R---~Lp~----h~dl~r~~a~a~t~~n~~~  132 (414)
T COG5379          62 GIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAAFR---HLPS----HEDLVRFFALAGTRRNSQA  132 (414)
T ss_pred             CCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHHHh---hccc----chhhHHHhhhhcccccchh
Confidence            456789999999877888887754  599999999999988776554221   1122    2366666643     2245


Q ss_pred             eeEEEEc
Q 025141          176 YDVIIGD  182 (257)
Q Consensus       176 fDvIi~D  182 (257)
                      ||+-+..
T Consensus       133 yD~flae  139 (414)
T COG5379         133 YDRFLAE  139 (414)
T ss_pred             hhccccc
Confidence            7766543

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=86.53  E-value=0.65  Score=40.47  Aligned_cols=45  Identities=31%  Similarity=0.387  Sum_probs=34.7

Q ss_pred             CCeEEEEeccchHHHHHHHhcC--------CCcEEEEEECCHHHHHHHHhhhh
Q 025141          103 PKTIFIMGGGEGSTAREILRHK--------TVEKVVMCDIDEEVVEFCKSYLV  147 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~--------~~~~v~~VEid~~vi~~a~~~~~  147 (257)
                      +-+|+++|+|.|.++.-+++.-        ...+++.||++|...+.-++.+.
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~   71 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS   71 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence            4799999999999998887731        12589999999999988888764

; PDB: 4F3N_A 1ZKD_B.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=86.52  E-value=5.5  Score=35.85  Aligned_cols=100  Identities=17%  Similarity=0.111  Sum_probs=56.7

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeE
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDv  178 (257)
                      .+.++||+.|+|+=+ .+.++++..+...|++++.+++-.+.+++. ...      .-+.....+..+..+.. ...+|.
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~~~~~~~~~~d~  231 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GAM------QTFNSREMSAPQIQSVLRELRFDQ  231 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------eEecCcccCHHHHHHHhcCCCCCe
Confidence            346799999864322 345566666655688999999888888653 211      00111112222222222 246886


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +++|...    .       ...+.. ..+.|+++|.+++-.
T Consensus       232 ~v~d~~G----~-------~~~~~~-~~~~l~~~G~iv~~G  260 (347)
T PRK10309        232 LILETAG----V-------PQTVEL-AIEIAGPRAQLALVG  260 (347)
T ss_pred             EEEECCC----C-------HHHHHH-HHHHhhcCCEEEEEc
Confidence            6667542    1       123455 457889999988643

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=86.50  E-value=2.4  Score=39.58  Aligned_cols=73  Identities=21%  Similarity=0.333  Sum_probs=45.4

Q ss_pred             CeEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhcCCCceeEE
Q 025141          104 KTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYDVI  179 (257)
Q Consensus       104 ~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~~~~~fDvI  179 (257)
                      ++||+||||. |.. +..++++ +..+|++.|.+++-.+.+....        .++++.+.-|+.+.  +...-..+|+|
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~li~~~d~V   72 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVALIKDFDLV   72 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHHHhcCCEE
Confidence            5899999953 222 2333443 4479999999987777666542        24666666666443  22222456999


Q ss_pred             EEcCCC
Q 025141          180 IGDLAD  185 (257)
Q Consensus       180 i~D~~~  185 (257)
                      |.-++.
T Consensus        73 In~~p~   78 (389)
T COG1748          73 INAAPP   78 (389)
T ss_pred             EEeCCc
Confidence            987763

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=86.43  E-value=21  Score=33.37  Aligned_cols=106  Identities=17%  Similarity=0.248  Sum_probs=56.8

Q ss_pred             eEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCC----CCCeEEEEc-chHHHHhcCCCcee
Q 025141          105 TIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS----DPRLELVIN-DARAELESRKESYD  177 (257)
Q Consensus       105 ~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~----~~rv~i~~~-Da~~~l~~~~~~fD  177 (257)
                      +|-+||+| -|.....++.. + -+|+++|+|++.++..++... .....+.    ..+.++... |..+.+    ..-|
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G-~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~----~~ad   75 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-N-HEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAY----RDAD   75 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-C-CcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhh----cCCC
Confidence            58889998 34333333333 4 479999999999998887432 1110000    012222221 111111    4579


Q ss_pred             EEEEcCCCCCCCCcccCCc----hHHHHHHHHcCcCCCCcEEEEecC
Q 025141          178 VIIGDLADPIEGGPCYKLY----TKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~----t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +|+...+.+....  ...+    -.+..+. +.+ +++|.+++..+.
T Consensus        76 ~vii~Vpt~~~~k--~~~~dl~~v~~v~~~-i~~-~~~g~lVV~~ST  118 (388)
T PRK15057         76 YVIIATPTDYDPK--TNYFNTSSVESVIKD-VVE-INPYAVMVIKST  118 (388)
T ss_pred             EEEEeCCCCCccC--CCCcChHHHHHHHHH-HHh-cCCCCEEEEeee
Confidence            9999888653211  1122    2344566 455 677777766653

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=86.28  E-value=6.1  Score=34.92  Aligned_cols=96  Identities=20%  Similarity=0.254  Sum_probs=58.6

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fD  177 (257)
                      .+..+||+.|+  |.|..+.++++..+ .+|+++..+++-.+.++++ ...      .-+.....|..+.++. ....+|
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~~-Ga~------~vi~~~~~~~~~~v~~~~~~gvd  213 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKEL-GFD------AVFNYKTVSLEEALKEAAPDGID  213 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeCCCccHHHHHHHHCCCCcE
Confidence            34678999984  55667777888766 4799999888888888773 211      1111112343333432 235699


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+ |...    +        +.++. ..+.|+++|.++.-
T Consensus       214 ~vl-d~~g----~--------~~~~~-~~~~l~~~G~iv~~  240 (329)
T cd08294         214 CYF-DNVG----G--------EFSST-VLSHMNDFGRVAVC  240 (329)
T ss_pred             EEE-ECCC----H--------HHHHH-HHHhhccCCEEEEE
Confidence            887 4321    1        22345 56789999988753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=86.22  E-value=6.3  Score=35.35  Aligned_cols=98  Identities=23%  Similarity=0.276  Sum_probs=56.0

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc----hHHHHhcC-CC
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND----ARAELESR-KE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D----a~~~l~~~-~~  174 (257)
                      .+..+||+.|+|+ |..+.++++..+...|+++.-+++-.+.+++. ...      .-+.....+    ..+..+.. .+
T Consensus       161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~vi~~~~~~~~~~~~~~~~~~~~~  233 (343)
T cd05285         161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT------HTVNVRTEDTPESAEKIAELLGGK  233 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc------EEeccccccchhHHHHHHHHhCCC
Confidence            4567899977654 45666777776654588898888877777653 211      111111112    12222222 35


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .+|+|+-....            ...+.. ..+.|+++|.++.-
T Consensus       234 ~~d~vld~~g~------------~~~~~~-~~~~l~~~G~~v~~  264 (343)
T cd05285         234 GPDVVIECTGA------------ESCIQT-AIYATRPGGTVVLV  264 (343)
T ss_pred             CCCEEEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence            69998854321            113445 46688999988753

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=86.20  E-value=4.9  Score=37.69  Aligned_cols=72  Identities=24%  Similarity=0.256  Sum_probs=47.8

Q ss_pred             CCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhc-CCCce
Q 025141          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELES-RKESY  176 (257)
Q Consensus       102 ~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~-~~~~f  176 (257)
                      ..++++++|+|.=+  +++.+.+ .+ .+|+++|.|++.++..++.+         +.+.++.+|+.+  .++. .-+++
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~-~~-~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a  298 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEK-EG-YSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA  298 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-CC-CeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence            46889999996543  2333333 23 48999999999888776532         245678888843  3433 33679


Q ss_pred             eEEEEcCC
Q 025141          177 DVIIGDLA  184 (257)
Q Consensus       177 DvIi~D~~  184 (257)
                      |.|++-..
T Consensus       299 ~~vi~~~~  306 (453)
T PRK09496        299 DAFIALTN  306 (453)
T ss_pred             CEEEECCC
Confidence            99887654

>PLN02740 Alcohol dehydrogenase-like

Probab=86.13  E-value=5.2  Score=36.75  Aligned_cols=98  Identities=14%  Similarity=0.080  Sum_probs=55.4

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-CCCce
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~--~Da~~~l~~-~~~~f  176 (257)
                      ...++||++|+|.=+ .+.++++..+..+|++++.+++-.+.+++. ..      +.-+....  .|..+.++. ..+.+
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~  269 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI------TDFINPKDSDKPVHERIREMTGGGV  269 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC------cEEEecccccchHHHHHHHHhCCCC
Confidence            346799999864322 345566666655799999999999998763 21      11111111  123333332 22369


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCC-cEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gil~~~  218 (257)
                      |+|+--..     .+       +.++. ..+.++++ |.+++-
T Consensus       270 dvvid~~G-----~~-------~~~~~-a~~~~~~g~G~~v~~  299 (381)
T PLN02740        270 DYSFECAG-----NV-------EVLRE-AFLSTHDGWGLTVLL  299 (381)
T ss_pred             CEEEECCC-----Ch-------HHHHH-HHHhhhcCCCEEEEE
Confidence            98874322     11       23344 45567886 887653

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=86.13  E-value=7.1  Score=35.10  Aligned_cols=89  Identities=11%  Similarity=0.054  Sum_probs=53.4

Q ss_pred             CCCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~~~~~fDv  178 (257)
                      .+..+||+.|+| .|..+.++++..+ .+|++++.+++-.+.+++. ...         .++. .+      ...+.+|+
T Consensus       164 ~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~-Ga~---------~vi~~~~------~~~~~~d~  226 (329)
T TIGR02822       164 PPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALAL-GAA---------SAGGAYD------TPPEPLDA  226 (329)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHh-CCc---------eeccccc------cCcccceE
Confidence            346799999964 3335566677666 4799999999888888874 111         0110 01      11235787


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++.....     +       +.+.. ..+.|+++|.+++-.
T Consensus       227 ~i~~~~~-----~-------~~~~~-~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       227 AILFAPA-----G-------GLVPP-ALEALDRGGVLAVAG  254 (329)
T ss_pred             EEECCCc-----H-------HHHHH-HHHhhCCCcEEEEEe
Confidence            6543211     1       23455 467899999987643

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=86.11  E-value=6.6  Score=35.18  Aligned_cols=86  Identities=14%  Similarity=0.261  Sum_probs=49.3

Q ss_pred             CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhcCCCceeEE
Q 025141          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~-~~Da~~~l~~~~~~fDvI  179 (257)
                      .+++|++||.|.-+. +...++..+ .+|++++.++...+.++.. .          .+.+ ..+..+.+    ..+|+|
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~l----~~aDiV  214 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEEV----GKIDII  214 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHHh----CCCCEE
Confidence            578999999976443 223333344 5999999998766655542 1          1111 12323333    468999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      |.-.+.        .+.+.+.     .+.++|+++++
T Consensus       215 I~t~p~--------~~i~~~~-----l~~~~~g~vII  238 (296)
T PRK08306        215 FNTIPA--------LVLTKEV-----LSKMPPEALII  238 (296)
T ss_pred             EECCCh--------hhhhHHH-----HHcCCCCcEEE
Confidence            985431        2233333     34567777665

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=85.93  E-value=4.1  Score=37.82  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=24.9

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID  135 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid  135 (257)
                      ....+||++|+|+ |+.....+...++.+++.+|-|
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3567999999985 3333333334578899999988

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=85.75  E-value=3  Score=37.44  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=22.4

Q ss_pred             eEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHH
Q 025141          105 TIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEE  137 (257)
Q Consensus       105 ~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~  137 (257)
                      +||++|+|+ |+-....+...++.+++.+|-|-.
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~V   34 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTI   34 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence            589999973 333333333468899999998753

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=85.71  E-value=1.6  Score=40.28  Aligned_cols=48  Identities=25%  Similarity=0.352  Sum_probs=38.9

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhc----C----CCcEEEEEECCHHHHHHHHhhhh
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRH----K----TVEKVVMCDIDEEVVEFCKSYLV  147 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~----~----~~~~v~~VEid~~vi~~a~~~~~  147 (257)
                      .|.+-++++||.|.|.+++-+++.    .    ...++..||++|+..+.=++.+.
T Consensus        75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~  130 (370)
T COG1565          75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK  130 (370)
T ss_pred             CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence            466789999999999998877763    1    35799999999999888777654

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=85.69  E-value=6.6  Score=35.65  Aligned_cols=97  Identities=15%  Similarity=0.187  Sum_probs=58.6

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhc-CCCce
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~-Da~~~l~~-~~~~f  176 (257)
                      .+..+||+.|+  |.|.++.++++..+ .+|++++.+++-.+.+++.+...      .-+..... |..+.++. ..+.+
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv  229 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGFD------EAFNYKEEPDLDAALKRYFPEGI  229 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCCC------EEEECCCcccHHHHHHHHCCCCc
Confidence            34678999997  45667778888766 47889998888877776433321      11111111 34344433 23469


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|+ |...    +        ..+.. +.+.|+++|.+++-
T Consensus       230 D~v~-d~vG----~--------~~~~~-~~~~l~~~G~iv~~  257 (348)
T PLN03154        230 DIYF-DNVG----G--------DMLDA-ALLNMKIHGRIAVC  257 (348)
T ss_pred             EEEE-ECCC----H--------HHHHH-HHHHhccCCEEEEE
Confidence            9887 4321    1        12344 46789999998864

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=85.63  E-value=9  Score=34.22  Aligned_cols=82  Identities=15%  Similarity=0.180  Sum_probs=41.8

Q ss_pred             CCCCeEEEEeccchHHHH--HHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+.++||+||+|+-+-+.  .+.. .+..+|+++..+++-.+.+++........ ....+.+..-+....+...-.++|+
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~-~g~~~i~i~nRt~~~~~ka~~la~~~~~~-~~~~~~~~~~~~~~~l~~~~~~aDi  199 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAI-EGLKEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEALASADI  199 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEeCCccHHHHHHHHHHHhhhc-cCceEEEechhhhhhhhhhcccCCE
Confidence            456899999997654332  2233 46679999999864333333322211100 0112333221111112222357999


Q ss_pred             EEEcCC
Q 025141          179 IIGDLA  184 (257)
Q Consensus       179 Ii~D~~  184 (257)
                      ||...+
T Consensus       200 vINaTp  205 (288)
T PRK12749        200 LTNGTK  205 (288)
T ss_pred             EEECCC
Confidence            987655

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=85.63  E-value=0.59  Score=42.78  Aligned_cols=115  Identities=18%  Similarity=0.130  Sum_probs=74.3

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHH-------hhhhhccCCCCCCCeEEEEcchHHHHhcC
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCK-------SYLVVNKEAFSDPRLELVINDARAELESR  172 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~-------~~~~~~~~~~~~~rv~i~~~Da~~~l~~~  172 (257)
                      ..+++-|+|=-.|+|++...+++. + +-|.+-|||-.++...|       .+|..-+  ..+--+.+..+|.-+-.-..
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~F-G-a~viGtDIDyr~vragrg~~~si~aNFkQYg--~~~~fldvl~~D~sn~~~rs  281 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHF-G-AYVIGTDIDYRTVRAGRGEDESIKANFKQYG--SSSQFLDVLTADFSNPPLRS  281 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhh-c-ceeeccccchheeecccCCCcchhHhHHHhC--CcchhhheeeecccCcchhh
Confidence            456678999999999998887775 4 58999999999998543       3343221  12234567777765433333


Q ss_pred             CCceeEEEEcCCCCCCC----------------------CcccCCchH-----HHHHHHHcCcCCCCcEEEEec
Q 025141          173 KESYDVIIGDLADPIEG----------------------GPCYKLYTK-----SFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~----------------------~p~~~L~t~-----ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ...||.|++|++-+...                      .|....|+.     +.+.- ..++|..||.++.+.
T Consensus       282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~f-ss~~L~~ggrlv~w~  354 (421)
T KOG2671|consen  282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCF-SSRRLVDGGRLVFWL  354 (421)
T ss_pred             cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHh-hHhhhhcCceEEEec
Confidence            67899999999832210                      111122221     23333 368999999999875

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=85.57  E-value=4.7  Score=36.60  Aligned_cols=96  Identities=20%  Similarity=0.276  Sum_probs=58.8

Q ss_pred             CCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CC-Ccee
Q 025141          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~-~~fD  177 (257)
                      ..++||+.|+  |-|.++.++++..+. .+.++--+++-.+.+++.-.       +.-+.....|..+-+++ +. +.+|
T Consensus       142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA-------d~vi~y~~~~~~~~v~~~t~g~gvD  213 (326)
T COG0604         142 PGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA-------DHVINYREEDFVEQVRELTGGKGVD  213 (326)
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC-------CEEEcCCcccHHHHHHHHcCCCCce
Confidence            3689999995  445578888887665 44455455544446665432       22334445555566654 23 4699


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+--..             .+.+.. ..+.|+++|.++.-.
T Consensus       214 vv~D~vG-------------~~~~~~-~l~~l~~~G~lv~ig  241 (326)
T COG0604         214 VVLDTVG-------------GDTFAA-SLAALAPGGRLVSIG  241 (326)
T ss_pred             EEEECCC-------------HHHHHH-HHHHhccCCEEEEEe
Confidence            9984321             233444 467899999988754

>PLN02827 Alcohol dehydrogenase-like

Probab=85.47  E-value=7  Score=35.97  Aligned_cols=99  Identities=14%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-CCCce
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~--~Da~~~l~~-~~~~f  176 (257)
                      .+..+||+.|+|+ |..+.++++..+...|++++.+++-.+.+++. ...      .-+....  .|..+.++. ....+
T Consensus       192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~  264 (378)
T PLN02827        192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GVT------DFINPNDLSEPIQQVIKRMTGGGA  264 (378)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------EEEcccccchHHHHHHHHHhCCCC
Confidence            3468999998643 22345566666665789999999888888764 211      0011111  233344432 22369


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCC-cEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gil~~~~  219 (257)
                      |+|+--..     .+       ..+.. ..+.|+++ |.+++-.
T Consensus       265 d~vid~~G-----~~-------~~~~~-~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        265 DYSFECVG-----DT-------GIATT-ALQSCSDGWGLTVTLG  295 (378)
T ss_pred             CEEEECCC-----Ch-------HHHHH-HHHhhccCCCEEEEEC
Confidence            98874321     11       22344 45678898 9987643

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=85.36  E-value=4.4  Score=30.14  Aligned_cols=91  Identities=19%  Similarity=0.335  Sum_probs=48.3

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ..+.++||++|+|.-+..+.-.-....++|+++..+.   +..+            .+++++..+..+.    -..+|+|
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~------------~~i~~~~~~~~~~----l~~~~lV   64 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE------------GLIQLIRREFEED----LDGADLV   64 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH------------TSCEEEESS-GGG----CTTESEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh------------hHHHHHhhhHHHH----HhhheEE
Confidence            4577899999998766654333233347999988776   2222            2455554443222    2569999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      +....++        -.....++.     .+.-|+++-....|
T Consensus        65 ~~at~d~--------~~n~~i~~~-----a~~~~i~vn~~D~p   94 (103)
T PF13241_consen   65 FAATDDP--------ELNEAIYAD-----ARARGILVNVVDDP   94 (103)
T ss_dssp             EE-SS-H--------HHHHHHHHH-----HHHTTSEEEETT-C
T ss_pred             EecCCCH--------HHHHHHHHH-----HhhCCEEEEECCCc
Confidence            9765432        123444444     33457777554444

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=85.22  E-value=7.5  Score=34.76  Aligned_cols=72  Identities=19%  Similarity=0.267  Sum_probs=43.3

Q ss_pred             cCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 025141           75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (257)
Q Consensus        75 dG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (257)
                      ||.+...+-|-..+.+.+.....-.....++||++|.|+-+-  +..+++ .+..+|+++.-+++-.+...+.|+
T Consensus        98 ~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~-~g~~~i~V~NRt~~ra~~La~~~~  171 (283)
T COG0169          98 DGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAE-AGAKRITVVNRTRERAEELADLFG  171 (283)
T ss_pred             CCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhh
Confidence            366666555644455555432211122468999999986653  344444 356799999997776655555444

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=85.17  E-value=26  Score=31.51  Aligned_cols=106  Identities=18%  Similarity=0.294  Sum_probs=55.2

Q ss_pred             eEEEEeccc-hHHH-HHHHhcCCCcEEEEEECCHHHHH-HHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          105 TIFIMGGGE-GSTA-REILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       105 ~VL~IG~G~-G~~~-~~l~~~~~~~~v~~VEid~~vi~-~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +|.+||+|. |... ..++......++..+|++++..+ .+.......  .+. +...+..+|-.. +    ...|+|++
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~--~~~-~~~~i~~~d~~~-l----~~aDiVii   73 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGT--PFV-KPVRIYAGDYAD-C----KGADVVVI   73 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccc--ccc-CCeEEeeCCHHH-h----CCCCEEEE
Confidence            689999986 3333 33333332358999999987665 233221111  112 234555555322 2    46799999


Q ss_pred             cCCCCCCCCccc-CCc--hHHHHHHH---HcCcCCCCcEEEEec
Q 025141          182 DLADPIEGGPCY-KLY--TKSFYEFV---VKPRLNPEGIFVTQA  219 (257)
Q Consensus       182 D~~~~~~~~p~~-~L~--t~ef~~~~---~~~~L~pgGil~~~~  219 (257)
                      .+..+...+... .|.  +.+.++.+   ++ ...|+|++++-.
T Consensus        74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~-~~~~~giiiv~t  116 (308)
T cd05292          74 TAGANQKPGETRLDLLKRNVAIFKEIIPQIL-KYAPDAILLVVT  116 (308)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCeEEEEec
Confidence            887554211110 111  22333331   23 366889887654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=84.68  E-value=9.2  Score=33.96  Aligned_cols=96  Identities=20%  Similarity=0.256  Sum_probs=57.8

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-CCCce
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~-~~~~f  176 (257)
                      .+..+||+.|+  |.|..+.++++..+. +|+++..+++-.+.++++ +..      .-+.... .+..+.++. ..+.+
T Consensus       137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~l-Ga~------~vi~~~~~~~~~~~~~~~~~~gv  208 (325)
T TIGR02825       137 KGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKL-GFD------VAFNYKTVKSLEETLKKASPDGY  208 (325)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc-CCC------EEEeccccccHHHHHHHhCCCCe
Confidence            34679999984  566677788887664 788888888888888653 211      0011111 123333333 23469


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|+ |...    +        +.+.. ..+.|+++|.++.-
T Consensus       209 dvv~-d~~G----~--------~~~~~-~~~~l~~~G~iv~~  236 (325)
T TIGR02825       209 DCYF-DNVG----G--------EFSNT-VIGQMKKFGRIAIC  236 (325)
T ss_pred             EEEE-ECCC----H--------HHHHH-HHHHhCcCcEEEEe
Confidence            9988 4321    1        12344 46689999998854

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=84.39  E-value=31  Score=31.11  Aligned_cols=110  Identities=16%  Similarity=0.246  Sum_probs=56.6

Q ss_pred             eEEEEeccc-hHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCC-CCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          105 TIFIMGGGE-GSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD-PRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       105 ~VL~IG~G~-G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~-~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +|-+||+|. |+.. ..++...-..++..+|++++..+--..-+... ..+.. .++++..+|..+ +    ..-|+|++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y~~-~----~~aDivvi   74 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDYDD-C----ADADIIVI   74 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCHHH-h----CCCCEEEE
Confidence            578999976 5554 33444333358999999876543322211111 11222 357777777322 2    45799999


Q ss_pred             cCCCCCCCCcc---cCCc--hHHHHHHHHc--CcCCCCcEEEEecC
Q 025141          182 DLADPIEGGPC---YKLY--TKSFYEFVVK--PRLNPEGIFVTQAG  220 (257)
Q Consensus       182 D~~~~~~~~p~---~~L~--t~ef~~~~~~--~~L~pgGil~~~~~  220 (257)
                      .+-.+...+..   ..|+  +.+.++.++.  ..-.|+|++++-.+
T Consensus        75 taG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN  120 (307)
T cd05290          75 TAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN  120 (307)
T ss_pred             CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            77544321211   1222  2234444211  22347898876443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=84.30  E-value=20  Score=32.17  Aligned_cols=112  Identities=15%  Similarity=0.165  Sum_probs=61.6

Q ss_pred             cEEEEEecCCeeEE-EEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHH--HHHHhcCCCcEEEEEECC
Q 025141           59 DIALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDID  135 (257)
Q Consensus        59 ~i~v~~~~~~g~~L-~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid  135 (257)
                      .+.+++.+. |+.+ .+||...+.-+..-  ...+. .-++..++++++++||+|.=+-.  ..+....+..+|.+++.+
T Consensus        84 ~i~l~d~~t-G~p~a~~d~~~lT~~RTaA--~sala-~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~  159 (304)
T PRK07340         84 EVVVADAAT-GERLFLLDGPTVTGRRTAA--VSLLA-ARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT  159 (304)
T ss_pred             EEEEEECCC-CcEEEEEcChhHHHHHHHH--HHHHH-HHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            455555554 4433 56766554322110  01111 12233467899999999765532  233233456789999999


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025141          136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       136 ~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~  185 (257)
                      ++-.+...+.+...       .+.+...|..+.+    ...|+|+.-.+.
T Consensus       160 ~~~a~~~a~~~~~~-------~~~~~~~~~~~av----~~aDiVitaT~s  198 (304)
T PRK07340        160 AASAAAFCAHARAL-------GPTAEPLDGEAIP----EAVDLVVTATTS  198 (304)
T ss_pred             HHHHHHHHHHHHhc-------CCeeEECCHHHHh----hcCCEEEEccCC
Confidence            87766554444311       1233345655555    478999987654

>PRK08328 hypothetical protein; Provisional

Probab=84.20  E-value=1.4  Score=37.95  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=25.2

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~  136 (257)
                      ..++||++|||+ |+.....+...++.+++.+|-|.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            467899999985 55444444446789999998663

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=84.01  E-value=12  Score=35.34  Aligned_cols=69  Identities=25%  Similarity=0.440  Sum_probs=41.1

Q ss_pred             eEEEEeccchHHHHHHHh----c---CCCcEEEEEECCHHHHHH----HHhhhhhccCCCCCCCeEE-EEcchHHHHhcC
Q 025141          105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDIDEEVVEF----CKSYLVVNKEAFSDPRLEL-VINDARAELESR  172 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~----~---~~~~~v~~VEid~~vi~~----a~~~~~~~~~~~~~~rv~i-~~~Da~~~l~~~  172 (257)
                      +|.+||+|+. .+..+.+    .   -+..+|..+|||++-++.    +++.+...+     +.+++ ...|-++-++  
T Consensus         2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g-----~~~~v~~ttD~~~Al~--   73 (425)
T cd05197           2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVG-----ADIKFEKTMDLEDAII--   73 (425)
T ss_pred             EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhC-----CCeEEEEeCCHHHHhC--
Confidence            6889999996 5554443    2   235799999999976665    444444321     23333 3355555553  


Q ss_pred             CCceeEEEEcC
Q 025141          173 KESYDVIIGDL  183 (257)
Q Consensus       173 ~~~fDvIi~D~  183 (257)
                        ..|.|+...
T Consensus        74 --gADfVi~~i   82 (425)
T cd05197          74 --DADFVINQF   82 (425)
T ss_pred             --CCCEEEEee
Confidence              246665543

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=83.90  E-value=4.9  Score=39.92  Aligned_cols=70  Identities=24%  Similarity=0.356  Sum_probs=48.9

Q ss_pred             CCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhcCC-Ccee
Q 025141          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYD  177 (257)
Q Consensus       103 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~~~-~~fD  177 (257)
                      ..+|+++|+|.=+  +++.+.+ .+ .+++++|.|++.++.++++           ..+++.+|+.+.  +++.+ ++.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~-~g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~  466 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLS-SG-VKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE  466 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHh-CC-CCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence            3689999997654  2334443 33 4799999999999988762           346888998553  44433 6889


Q ss_pred             EEEEcCCC
Q 025141          178 VIIGDLAD  185 (257)
Q Consensus       178 vIi~D~~~  185 (257)
                      ++++...+
T Consensus       467 ~vvv~~~d  474 (621)
T PRK03562        467 VLINAIDD  474 (621)
T ss_pred             EEEEEeCC
Confidence            88877654

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=83.84  E-value=9.2  Score=36.88  Aligned_cols=110  Identities=12%  Similarity=0.228  Sum_probs=66.7

Q ss_pred             CeEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhcCCCceeE
Q 025141          104 KTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDV  178 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~-~l~~~~~~fDv  178 (257)
                      ..|.+.-||+|++..+..+.    ....++++-|+++.+...++.+.-+...  ..+...+..+|-.. +-.....+||+
T Consensus       219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~--~~~t~~~~~~dtl~~~d~~~~~~~D~  296 (501)
T TIGR00497       219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI--DYANFNIINADTLTTKEWENENGFEV  296 (501)
T ss_pred             CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC--CccccCcccCCcCCCccccccccCCE
Confidence            58999999999988765432    1224689999999999999988654321  11223333344322 10012356999


Q ss_pred             EEEcCCCC--CCCC--cc---------------cCCchHHHHHHHHcCcCCCCcEEE
Q 025141          179 IIGDLADP--IEGG--PC---------------YKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       179 Ii~D~~~~--~~~~--p~---------------~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      |+.+++..  |..+  |+               ..-...-|+.. +...|++||...
T Consensus       297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h-~~~~L~~gG~~a  352 (501)
T TIGR00497       297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLH-ALYVLGQEGTAA  352 (501)
T ss_pred             EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHH-HHHhcCCCCeEE
Confidence            99998632  2110  10               00113467777 678999999644

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=83.81  E-value=31  Score=32.09  Aligned_cols=120  Identities=12%  Similarity=0.121  Sum_probs=73.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHH-HHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi-~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ..|.|+++|.|.-+=........-.++|.+.|+||--. +.+-+            ..++...+      .....-|+++
T Consensus       208 aGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~Md------------Gf~V~~m~------~Aa~~gDifi  269 (420)
T COG0499         208 AGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMD------------GFRVMTME------EAAKTGDIFV  269 (420)
T ss_pred             cCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhc------------CcEEEEhH------HhhhcCCEEE
Confidence            57899999988765433333222347999999999543 22222            22333211      1113347777


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSS  252 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~  252 (257)
                      ...-.       ....+.|-++. +    | +|.++.|.++-+..-+...+++.....+++-|+|.-|.++.
T Consensus       270 T~TGn-------kdVi~~eh~~~-M----k-DgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~l~~  328 (420)
T COG0499         270 TATGN-------KDVIRKEHFEK-M----K-DGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYELPD  328 (420)
T ss_pred             EccCC-------cCccCHHHHHh-c----c-CCeEEecccccceeccHHHHHHhhhhHhccccCceEEEcCC
Confidence            65321       23445665554 3    3 67777798876544456677777778888999999988763

>PRK06223 malate dehydrogenase; Reviewed

Probab=83.72  E-value=17  Score=32.35  Aligned_cols=108  Identities=25%  Similarity=0.289  Sum_probs=54.7

Q ss_pred             CeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHH-hhhhhccCCCCCCCeEEEE-cchHHHHhcCCCceeEEE
Q 025141          104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCK-SYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVII  180 (257)
Q Consensus       104 ~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~-~~~~~~~~~~~~~rv~i~~-~Da~~~l~~~~~~fDvIi  180 (257)
                      ++|-+||+|. |......+...+..+|..+|++++..+... +......  ......++.. +|. +-+    ..-|+|+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~--~~~~~~~i~~~~d~-~~~----~~aDiVi   75 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAP--VEGFDTKITGTNDY-EDI----AGSDVVV   75 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhh--hcCCCcEEEeCCCH-HHH----CCCCEEE
Confidence            5899999988 665544444333228999999988653221 1111100  1111234442 443 222    3569999


Q ss_pred             EcCCCCCCCCcc-cCC--c----hHHHHHHHHcCcCCCCcEEEEecC
Q 025141          181 GDLADPIEGGPC-YKL--Y----TKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       181 ~D~~~~~~~~p~-~~L--~----t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +....|...+.. ..+  .    -+++.+. +.+. .|++++++..+
T Consensus        76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~-i~~~-~~~~~viv~tN  120 (307)
T PRK06223         76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEG-IKKY-APDAIVIVVTN  120 (307)
T ss_pred             ECCCCCCCcCCCHHHHHHHHHHHHHHHHHH-HHHH-CCCeEEEEecC
Confidence            876544321110 011  1    1345555 4444 37787776543

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=83.71  E-value=15  Score=33.13  Aligned_cols=96  Identities=19%  Similarity=0.220  Sum_probs=52.9

Q ss_pred             CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHH-HHHHhhhhhccCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025141          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi-~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~~~~~fDv  178 (257)
                      ..++|++||+|.=+. ....++..+..+|++++.+++-. ++++++ +.          ..+. .|..+.+    ..+|+
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g~----------~~~~~~~~~~~l----~~aDv  241 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-GG----------NAVPLDELLELL----NEADV  241 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-CC----------eEEeHHHHHHHH----hcCCE
Confidence            578999999864332 22222224557899999998644 555553 11          1111 2333333    35799


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      ||.-...+.   |      .+.+.. +.+....++.+++...-|
T Consensus       242 Vi~at~~~~---~------~~~~~~-~~~~~~~~~~~viDlavP  275 (311)
T cd05213         242 VISATGAPH---Y------AKIVER-AMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             EEECCCCCc---h------HHHHHH-HHhhCCCCCeEEEEeCCC
Confidence            998765432   1      333343 222233367888876544

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK07904 short chain dehydrogenase; Provisional

Probab=83.68  E-value=9  Score=32.94  Aligned_cols=79  Identities=19%  Similarity=0.325  Sum_probs=45.6

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHH-HHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVINDARA------ELE  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~v-i~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~  170 (257)
                      .++++||+.|+++|.   ++++++++. ..+|+++..+++- .+...+.+...    ...+++++..|..+      .++
T Consensus         6 ~~~~~vlItGas~giG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~~----~~~~v~~~~~D~~~~~~~~~~~~   80 (253)
T PRK07904          6 GNPQTILLLGGTSEIGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKAA----GASSVEVIDFDALDTDSHPKVID   80 (253)
T ss_pred             CCCcEEEEEcCCcHHHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHhc----CCCceEEEEecCCChHHHHHHHH
Confidence            567889999996554   334444442 2589898887764 44333333221    12367777776532      122


Q ss_pred             c--CCCceeEEEEcCC
Q 025141          171 S--RKESYDVIIGDLA  184 (257)
Q Consensus       171 ~--~~~~fDvIi~D~~  184 (257)
                      .  ..++.|+++..+.
T Consensus        81 ~~~~~g~id~li~~ag   96 (253)
T PRK07904         81 AAFAGGDVDVAIVAFG   96 (253)
T ss_pred             HHHhcCCCCEEEEeee
Confidence            1  1257999887653

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=83.65  E-value=1.1  Score=39.97  Aligned_cols=99  Identities=17%  Similarity=0.112  Sum_probs=66.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +...-+|++|||.|-....   . +...+.+.|+....+..+++-          ....+...|+.+.. .....||.++
T Consensus        44 ~~gsv~~d~gCGngky~~~---~-p~~~~ig~D~c~~l~~~ak~~----------~~~~~~~ad~l~~p-~~~~s~d~~l  108 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLGV---N-PLCLIIGCDLCTGLLGGAKRS----------GGDNVCRADALKLP-FREESFDAAL  108 (293)
T ss_pred             CCcceeeecccCCcccCcC---C-CcceeeecchhhhhccccccC----------CCceeehhhhhcCC-CCCCccccch
Confidence            4467899999999865432   2 346789999988888887752          11156677876643 3457899988


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +-+.-++.   +...-....+++ +.++|+|||-..+.
T Consensus       109 siavihhl---sT~~RR~~~l~e-~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen  109 SIAVIHHL---STRERRERALEE-LLRVLRPGGNALVY  142 (293)
T ss_pred             hhhhhhhh---hhHHHHHHHHHH-HHHHhcCCCceEEE
Confidence            77653221   112334578888 78999999976554

>PLN02256 arogenate dehydrogenase

Probab=83.65  E-value=33  Score=30.89  Aligned_cols=91  Identities=15%  Similarity=0.140  Sum_probs=52.0

Q ss_pred             CCCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+..+|.+||+|.  |.++..+.+. + .+|++++.++. .+.++++           .+.. ..|..+.+.   ...|+
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~-G-~~V~~~d~~~~-~~~a~~~-----------gv~~-~~~~~e~~~---~~aDv   95 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQ-G-HTVLATSRSDY-SDIAAEL-----------GVSF-FRDPDDFCE---EHPDV   95 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhC-C-CEEEEEECccH-HHHHHHc-----------CCee-eCCHHHHhh---CCCCE
Confidence            4567899999873  4455555543 3 47999999863 2333321           1111 334444332   34799


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHH-cCcCCCCcEEEEecC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAG  220 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGil~~~~~  220 (257)
                      |++..+..         ...++++. + ...++|+.+ ++..+
T Consensus        96 Vilavp~~---------~~~~vl~~-l~~~~l~~~~i-viDv~  127 (304)
T PLN02256         96 VLLCTSIL---------STEAVLRS-LPLQRLKRSTL-FVDVL  127 (304)
T ss_pred             EEEecCHH---------HHHHHHHh-hhhhccCCCCE-EEecC
Confidence            99875421         23566666 5 456777764 45543

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=83.63  E-value=20  Score=32.18  Aligned_cols=107  Identities=19%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             CeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHh--hhhhccCCCCCCCeEEE-EcchHHHHhcCCCceeEE
Q 025141          104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKS--YLVVNKEAFSDPRLELV-INDARAELESRKESYDVI  179 (257)
Q Consensus       104 ~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~--~~~~~~~~~~~~rv~i~-~~Da~~~l~~~~~~fDvI  179 (257)
                      .+|-+||+|. |.....++...+..+|+.+|++++..+ ++.  .....  .......++. .+|..+ +    ..-|+|
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~d~~~~~--~~~~~~~~i~~t~d~~~-~----~~aDiV   73 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKALDMYEAS--PVGGFDTKVTGTNNYAD-T----ANSDIV   73 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHHhhhhhh--hccCCCcEEEecCCHHH-h----CCCCEE
Confidence            4789999986 444333333323237999999877433 222  21110  0111122343 255433 3    346999


Q ss_pred             EEcCCCCCCCCcc-cCC--chH----HHHHHHHcCcCCCCcEEEEecC
Q 025141          180 IGDLADPIEGGPC-YKL--YTK----SFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       180 i~D~~~~~~~~p~-~~L--~t~----ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ++.+..|...+.. ..|  .+.    ++.+. +.+. .|++++++-.+
T Consensus        74 Iitag~p~~~~~sR~~l~~~N~~iv~~i~~~-I~~~-~p~~~iIv~tN  119 (305)
T TIGR01763        74 VITAGLPRKPGMSREDLLSMNAGIVREVTGR-IMEH-SPNPIIVVVSN  119 (305)
T ss_pred             EEcCCCCCCcCCCHHHHHHHHHHHHHHHHHH-HHHH-CCCeEEEEecC
Confidence            9987654321110 011  122    33344 3444 58888776443

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=83.58  E-value=10  Score=36.08  Aligned_cols=39  Identities=31%  Similarity=0.461  Sum_probs=27.6

Q ss_pred             eEEEEeccchHHHHHHHh----c---CCCcEEEEEECCHHHHHHHHh
Q 025141          105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDIDEEVVEFCKS  144 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~----~---~~~~~v~~VEid~~vi~~a~~  144 (257)
                      +|.+||+|+. .+..+.+    .   -+..+|+.+|||++-++...+
T Consensus         2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~   47 (437)
T cd05298           2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAE   47 (437)
T ss_pred             eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHH
Confidence            6899999996 5544443    2   235799999999977766443

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=83.42  E-value=17  Score=29.77  Aligned_cols=109  Identities=15%  Similarity=0.137  Sum_probs=61.6

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ...++|.+||+|.=+ .....++-.+ .+|.+++..+.........           .+  ...+..+.++    +.|+|
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~----~aDiv   95 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLA----QADIV   95 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHH----H-SEE
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcc----hhhhh
Confidence            357899999996433 2222233344 5999999998876622221           11  2234555554    57999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~  240 (257)
                      ++-.+...  . ..++++.++|+.     ||+|.++ +|.+-.. .-+   -.++++.|++
T Consensus        96 ~~~~plt~--~-T~~li~~~~l~~-----mk~ga~l-vN~aRG~-~vd---e~aL~~aL~~  143 (178)
T PF02826_consen   96 SLHLPLTP--E-TRGLINAEFLAK-----MKPGAVL-VNVARGE-LVD---EDALLDALES  143 (178)
T ss_dssp             EE-SSSST--T-TTTSBSHHHHHT-----STTTEEE-EESSSGG-GB----HHHHHHHHHT
T ss_pred             hhhhcccc--c-cceeeeeeeeec-----cccceEE-Eeccchh-hhh---hhHHHHHHhh
Confidence            99887421  1 247888888775     6666655 5764221 122   2355666654

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=83.40  E-value=14  Score=33.07  Aligned_cols=98  Identities=16%  Similarity=0.129  Sum_probs=51.4

Q ss_pred             CCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ...+|++||+|.  +.++..+.+. + .+|+.+.-++.  +..++. +....   .+.+..+..-.+..... ..+.+|+
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~-g-~~V~~~~r~~~--~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~-~~~~~D~   75 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARA-G-FDVHFLLRSDY--EAVRENGLQVDS---VHGDFHLPPVQAYRSAE-DMPPCDW   75 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHC-C-CeEEEEEeCCH--HHHHhCCeEEEe---CCCCeeecCceEEcchh-hcCCCCE
Confidence            346899999885  3344555543 3 47888887762  333322 11110   01111111000000111 1257999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      |++-....         .+.+.++. ++..+++++.++.
T Consensus        76 vilavK~~---------~~~~~~~~-l~~~~~~~~~iv~  104 (313)
T PRK06249         76 VLVGLKTT---------ANALLAPL-IPQVAAPDAKVLL  104 (313)
T ss_pred             EEEEecCC---------ChHhHHHH-HhhhcCCCCEEEE
Confidence            99875421         13566777 6888999997664

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=83.35  E-value=9.1  Score=30.05  Aligned_cols=74  Identities=16%  Similarity=0.149  Sum_probs=42.4

Q ss_pred             CCCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .++++|+++|+|.  ..+++.+.+. +..+|++++.+++-.+...+.+...       .+.....|..+.    -+..|+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~Dv   84 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGEL-------GIAIAYLDLEEL----LAEADL   84 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhc-------ccceeecchhhc----cccCCE
Confidence            4578999999863  1233444443 2468999999987765544433210       011122332222    367899


Q ss_pred             EEEcCCCC
Q 025141          179 IIGDLADP  186 (257)
Q Consensus       179 Ii~D~~~~  186 (257)
                      |++..+.+
T Consensus        85 vi~~~~~~   92 (155)
T cd01065          85 IINTTPVG   92 (155)
T ss_pred             EEeCcCCC
Confidence            99987753

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=83.27  E-value=6.7  Score=30.75  Aligned_cols=95  Identities=21%  Similarity=0.344  Sum_probs=52.5

Q ss_pred             EEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeE--EEEcchHHHHhcCCCceeEEE
Q 025141          106 IFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLE--LVINDARAELESRKESYDVII  180 (257)
Q Consensus       106 VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~--i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      |+++|+|.=+  ++..|.+ .+ .+|+.+.-.+ -.+..++. +...... .+..+.  ....+.    ....+.||+||
T Consensus         1 I~I~G~GaiG~~~a~~L~~-~g-~~V~l~~r~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~D~vi   72 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ-AG-HDVTLVSRSP-RLEAIKEQGLTITGPD-GDETVQPPIVISAP----SADAGPYDLVI   72 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH-TT-CEEEEEESHH-HHHHHHHHCEEEEETT-EEEEEEEEEEESSH----GHHHSTESEEE
T ss_pred             CEEECcCHHHHHHHHHHHH-CC-CceEEEEccc-cHHhhhheeEEEEecc-cceecccccccCcc----hhccCCCcEEE
Confidence            6788887533  2334444 33 5899999988 54544332 2222110 011111  111111    12247899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +-.-         .....+.++. +++.++|+..+++-
T Consensus        73 v~vK---------a~~~~~~l~~-l~~~~~~~t~iv~~  100 (151)
T PF02558_consen   73 VAVK---------AYQLEQALQS-LKPYLDPNTTIVSL  100 (151)
T ss_dssp             E-SS---------GGGHHHHHHH-HCTGEETTEEEEEE
T ss_pred             EEec---------ccchHHHHHH-HhhccCCCcEEEEE
Confidence            8742         2335678888 79999999766653

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=83.21  E-value=19  Score=32.08  Aligned_cols=64  Identities=16%  Similarity=0.244  Sum_probs=36.2

Q ss_pred             cCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHH--HHHHhcCCCcEEEEEECCHHHHHH
Q 025141           75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEF  141 (257)
Q Consensus        75 dG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~  141 (257)
                      ||.+.-.+-|-.-+.+.+..  .....+.++||+||+|+-+-+  ..+++ .+..+|++++.+++-.+.
T Consensus       101 ~g~l~G~NTD~~Gf~~~L~~--~~~~~~~k~vlilGaGGaarAi~~aL~~-~g~~~i~i~nR~~~ka~~  166 (283)
T PRK14027        101 TGHTTGHNTDVSGFGRGMEE--GLPNAKLDSVVQVGAGGVGNAVAYALVT-HGVQKLQVADLDTSRAQA  166 (283)
T ss_pred             CCcEEEEcCCHHHHHHHHHh--cCcCcCCCeEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCCHHHHHH
Confidence            55554444443333333421  111235689999999765533  33333 456789999988754443

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=83.20  E-value=6.3  Score=38.14  Aligned_cols=104  Identities=16%  Similarity=0.246  Sum_probs=64.1

Q ss_pred             CCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----cc-CCCC-------CCCeEEEEcchH
Q 025141          102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----NK-EAFS-------DPRLELVINDAR  166 (257)
Q Consensus       102 ~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~~-~~~~-------~~rv~i~~~Da~  166 (257)
                      +.++|-+||+|.  ..++..+++. + -+|+.+|.+++.++.++++...     .. +.+.       ..|++.. .|..
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~a-G-~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~   80 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASA-G-HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH   80 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence            446899999984  3455666654 3 4899999999999877654321     10 0000       0233332 2322


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       167 ~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                       -+    ..-|+||...++..       -...++|+. +.+.++|+-+++.|+.+
T Consensus        81 -~l----~~aDlVIEav~E~~-------~vK~~vf~~-l~~~~~~~~IlasnTSt  122 (503)
T TIGR02279        81 -AL----ADAGLVIEAIVENL-------EVKKALFAQ-LEELCPADTIIASNTSS  122 (503)
T ss_pred             -Hh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEECCCC
Confidence             12    35799998877532       123566777 67888888888877654

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=82.96  E-value=7.8  Score=32.84  Aligned_cols=77  Identities=19%  Similarity=0.307  Sum_probs=45.6

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH-----------H
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-----------A  167 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~-----------~  167 (257)
                      +.++||+.|+.+|.   +++++++. + .+|.+++.+++-.+...+.+...    ...++.++..|..           +
T Consensus        11 ~~k~vlItG~~g~iG~~la~~l~~~-G-~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~~~   84 (247)
T PRK08945         11 KDRIILVTGAGDGIGREAALTYARH-G-ATVILLGRTEEKLEAVYDEIEAA----GGPQPAIIPLDLLTATPQNYQQLAD   84 (247)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEecccCCCHHHHHHHHH
Confidence            56789999975443   23444443 3 48999999887655444433321    1235666665552           1


Q ss_pred             HHhcCCCceeEEEEcCC
Q 025141          168 ELESRKESYDVIIGDLA  184 (257)
Q Consensus       168 ~l~~~~~~fDvIi~D~~  184 (257)
                      .+....++.|.|+..+.
T Consensus        85 ~~~~~~~~id~vi~~Ag  101 (247)
T PRK08945         85 TIEEQFGRLDGVLHNAG  101 (247)
T ss_pred             HHHHHhCCCCEEEECCc
Confidence            22223357899998875

>PRK06141 ornithine cyclodeaminase; Validated

Probab=82.88  E-value=36  Score=30.67  Aligned_cols=113  Identities=18%  Similarity=0.251  Sum_probs=62.9

Q ss_pred             CcEEEEEecCCeeEE-EEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHH--HHHhcCCCcEEEEEEC
Q 025141           58 QDIALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDI  134 (257)
Q Consensus        58 ~~i~v~~~~~~g~~L-~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~VEi  134 (257)
                      +.+.+++.+. |+.+ .+||...+.-+..-  ...+. .-.+..++.++|++||+|.=+...  .++...+..+|+++..
T Consensus        83 g~v~l~d~~t-G~p~ai~d~~~lT~~RTaa--~sala-~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R  158 (314)
T PRK06141         83 STYLLFDGRT-GEPLALVDGTELTARRTAA--ASALA-ASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR  158 (314)
T ss_pred             EEEEEEECCC-CCEEEEEcCcchhcchhHH--HHHHH-HHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            3466666654 4443 67887765543221  01111 122345678999999997655433  2233345679999999


Q ss_pred             CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025141          135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (257)
Q Consensus       135 d~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~  184 (257)
                      +++-.+...+.+...     ..++.. ..+..+.+    ...|+|++-.+
T Consensus       159 s~~~a~~~a~~~~~~-----g~~~~~-~~~~~~av----~~aDIVi~aT~  198 (314)
T PRK06141        159 DPAKAEALAAELRAQ-----GFDAEV-VTDLEAAV----RQADIISCATL  198 (314)
T ss_pred             CHHHHHHHHHHHHhc-----CCceEE-eCCHHHHH----hcCCEEEEeeC
Confidence            987765544443311     112332 35555444    45899876544

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=82.76  E-value=5.5  Score=40.21  Aligned_cols=102  Identities=17%  Similarity=0.231  Sum_probs=64.0

Q ss_pred             CeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCC-------CCCeEEEEcchHHH
Q 025141          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAE  168 (257)
Q Consensus       104 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~-------~~rv~i~~~Da~~~  168 (257)
                      ++|.+||+|.  .+++..++...+ -.|+.+|.+++.++.++++....      ...+.       -.++++. .|. +-
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~  386 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAG-LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-RG  386 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-HH
Confidence            7899999987  335555552334 58999999999998887654311      00000       0233333 221 11


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +    ..-|+||=..++..       -..+++|++ +.+.++|+.+++.|+.
T Consensus       387 ~----~~aDlViEav~E~~-------~~K~~v~~~-le~~~~~~~ilasnTS  426 (708)
T PRK11154        387 F----KHADVVIEAVFEDL-------ALKQQMVAE-VEQNCAPHTIFASNTS  426 (708)
T ss_pred             h----ccCCEEeecccccH-------HHHHHHHHH-HHhhCCCCcEEEECCC
Confidence            1    45788886655321       124678888 7999999999998864

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=82.67  E-value=8  Score=34.11  Aligned_cols=87  Identities=24%  Similarity=0.188  Sum_probs=52.6

Q ss_pred             eEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       105 ~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      +|.+||+|.  |+++..+.+. + .+|+++|.+++..+.+++.-.          +.....+. +.+    ...|+|++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~-g-~~V~~~d~~~~~~~~a~~~g~----------~~~~~~~~-~~~----~~aDlVila   64 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL-G-HTVYGVSRRESTCERAIERGL----------VDEASTDL-SLL----KDCDLVILA   64 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHCCC----------cccccCCH-hHh----cCCCEEEEc
Confidence            688999884  4566666654 3 489999999998877765310          11111121 212    457999988


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .+..         ...++++. +...++++-++ +..
T Consensus        65 vp~~---------~~~~~~~~-l~~~l~~~~ii-~d~   90 (279)
T PRK07417         65 LPIG---------LLLPPSEQ-LIPALPPEAIV-TDV   90 (279)
T ss_pred             CCHH---------HHHHHHHH-HHHhCCCCcEE-EeC
Confidence            6521         12456677 57777776544 444

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=82.63  E-value=22  Score=31.64  Aligned_cols=98  Identities=19%  Similarity=0.221  Sum_probs=50.8

Q ss_pred             cCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC
Q 025141           75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA  152 (257)
Q Consensus        75 dG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~  152 (257)
                      ||.+...+-|-.-+.+.+..  .....+.++||+||+|+-+-  +..+.. .+..+|+.++.+++-.+...+.+...   
T Consensus       101 ~g~l~G~NTD~~G~~~~l~~--~~~~~~~k~vlIlGaGGaaraia~aL~~-~G~~~I~I~nR~~~ka~~la~~l~~~---  174 (284)
T PRK12549        101 DGRRIGHNTDWSGFAESFRR--GLPDASLERVVQLGAGGAGAAVAHALLT-LGVERLTIFDVDPARAAALADELNAR---  174 (284)
T ss_pred             CCEEEEEcCCHHHHHHHHHh--hccCccCCEEEEECCcHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHHHHhh---
Confidence            45444444443333333321  11224568999999986543  233333 45678999999976555444333211   


Q ss_pred             CCCCCeEEEE-cchHHHHhcCCCceeEEEEcCC
Q 025141          153 FSDPRLELVI-NDARAELESRKESYDVIIGDLA  184 (257)
Q Consensus       153 ~~~~rv~i~~-~Da~~~l~~~~~~fDvIi~D~~  184 (257)
                        .+...+.. .+..+.    -..+|+||.-.+
T Consensus       175 --~~~~~~~~~~~~~~~----~~~aDiVInaTp  201 (284)
T PRK12549        175 --FPAARATAGSDLAAA----LAAADGLVHATP  201 (284)
T ss_pred             --CCCeEEEeccchHhh----hCCCCEEEECCc
Confidence              12233332 221111    245899888755

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=82.42  E-value=8.7  Score=37.97  Aligned_cols=93  Identities=18%  Similarity=0.256  Sum_probs=58.9

Q ss_pred             CeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcCC-CceeE
Q 025141          104 KTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESYDV  178 (257)
Q Consensus       104 ~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~~-~~fDv  178 (257)
                      .+|+++|+|.=+.  ++.+.++ + .+++++|.||+.++.++++           ...++.+|+.+  .+++.+ ++.|+
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~-g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~  467 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMAN-K-MRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEA  467 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhC-C-CCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence            5799999876442  3344433 3 4799999999999988762           24678888855  344433 68898


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++.-..++.     .   +......  .+.+.|+-.++...
T Consensus       468 vv~~~~d~~-----~---n~~i~~~--~r~~~p~~~IiaRa  498 (601)
T PRK03659        468 IVITCNEPE-----D---TMKIVEL--CQQHFPHLHILARA  498 (601)
T ss_pred             EEEEeCCHH-----H---HHHHHHH--HHHHCCCCeEEEEe
Confidence            888765432     1   1222232  34567777666654

>PRK06046 alanine dehydrogenase; Validated

Probab=82.40  E-value=32  Score=31.15  Aligned_cols=113  Identities=16%  Similarity=0.197  Sum_probs=63.7

Q ss_pred             cEEEEEecCCeeEE-EEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECC
Q 025141           59 DIALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID  135 (257)
Q Consensus        59 ~i~v~~~~~~g~~L-~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid  135 (257)
                      .|.+++... |+.+ .+||...+.-+...  ...+. .-++..++++++.+||+|.=+  .++.+...++..+|.+++.+
T Consensus        88 ~i~L~d~~t-G~p~aild~~~lT~~RTaA--~sala-~~~La~~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~  163 (326)
T PRK06046         88 VIILNSPET-GFPLAIMDGTYLTDMRTGA--AGGVA-AKYLARKDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT  163 (326)
T ss_pred             EEEEEeCCC-CceEEEEcCccHHHHHHHH--HHHHH-HHHhCCCCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC
Confidence            566666554 4433 56776654422210  01111 123445678999999998633  23344445677899999999


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025141          136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       136 ~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~  185 (257)
                      ++-.+...+.+...    ...++. ...|..+.+    + .|+|++-.+.
T Consensus       164 ~~~~~~~~~~~~~~----~~~~v~-~~~~~~~~l----~-aDiVv~aTps  203 (326)
T PRK06046        164 KSSAEKFVERMSSV----VGCDVT-VAEDIEEAC----D-CDILVTTTPS  203 (326)
T ss_pred             HHHHHHHHHHHHhh----cCceEE-EeCCHHHHh----h-CCEEEEecCC
Confidence            98777665544311    011232 245655554    2 6999886653

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=82.31  E-value=13  Score=33.25  Aligned_cols=97  Identities=20%  Similarity=0.234  Sum_probs=58.6

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-CCCce
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~-~~~~f  176 (257)
                      .+..+||+.|+  |-|..+.++++..+. +|+++..+++-.+.+++.++..      .-+.... .|..+.++. ....+
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv  222 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFD------DAFNYKEEPDLDAALKRYFPNGI  222 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCc------eeEEcCCcccHHHHHHHhCCCCc
Confidence            35689999995  556677778887664 7888888888888887633321      1111111 133333332 23569


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|+ |...    +        ..+.. +.+.|+++|.++.-
T Consensus       223 d~v~-d~~g----~--------~~~~~-~~~~l~~~G~iv~~  250 (338)
T cd08295         223 DIYF-DNVG----G--------KMLDA-VLLNMNLHGRIAAC  250 (338)
T ss_pred             EEEE-ECCC----H--------HHHHH-HHHHhccCcEEEEe
Confidence            9887 4321    1        22344 46789999988853

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=82.19  E-value=18  Score=32.02  Aligned_cols=37  Identities=14%  Similarity=0.200  Sum_probs=25.2

Q ss_pred             CCCeEEEEeccchHHH--HHHHhcCCCcEEEEEECCHHHH
Q 025141          102 NPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVV  139 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi  139 (257)
                      +.++||+||+|+-+-+  ..++. .+..+|+++.-+++-.
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~-~G~~~i~I~nRt~~ka  162 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALAS-LGVTDITVINRNPDKL  162 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHH-cCCCeEEEEeCCHHHH
Confidence            5689999999755532  33333 4567899999886543

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK07102 short chain dehydrogenase; Provisional

Probab=82.19  E-value=6.8  Score=33.14  Aligned_cols=75  Identities=19%  Similarity=0.161  Sum_probs=44.9

Q ss_pred             CeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------HhcCCC
Q 025141          104 KTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LESRKE  174 (257)
Q Consensus       104 ~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~~~~  174 (257)
                      ++||+.|+.+|.   +++.+++. + .+|++++.+++-.+...+.....    ...+++++..|..+.      +.....
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~-G-~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~   75 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAA-G-ARLYLAARDVERLERLADDLRAR----GAVAVSTHELDILDTASHAAFLDSLPA   75 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHh----cCCeEEEEecCCCChHHHHHHHHHHhh
Confidence            578999976443   33444443 3 48999999887554433332211    235778887776543      222334


Q ss_pred             ceeEEEEcCC
Q 025141          175 SYDVIIGDLA  184 (257)
Q Consensus       175 ~fDvIi~D~~  184 (257)
                      ++|+++..+.
T Consensus        76 ~~d~vv~~ag   85 (243)
T PRK07102         76 LPDIVLIAVG   85 (243)
T ss_pred             cCCEEEECCc
Confidence            6799998764

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=82.13  E-value=0.33  Score=41.44  Aligned_cols=93  Identities=19%  Similarity=0.257  Sum_probs=60.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ..|+++||||+|+|-++..+..+.  .+|.+-|++..|....++.           +.++.-  ..+|+. ++-+||+|.
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl~--~~ew~~-t~~k~dli~  174 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVLT--EIEWLQ-TDVKLDLIL  174 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCceee--ehhhhh-cCceeehHH
Confidence            457899999999999999887753  5788999998888766542           122221  234543 356799986


Q ss_pred             Ec-CCCCCCCCcccCCchHHHHHHHHcCcCCC-CcEEEE
Q 025141          181 GD-LADPIEGGPCYKLYTKSFYEFVVKPRLNP-EGIFVT  217 (257)
Q Consensus       181 ~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~p-gGil~~  217 (257)
                      += .-|-. ..|      -..++. ++.+|+| +|.+++
T Consensus       175 clNlLDRc-~~p------~kLL~D-i~~vl~psngrviv  205 (288)
T KOG3987|consen  175 CLNLLDRC-FDP------FKLLED-IHLVLAPSNGRVIV  205 (288)
T ss_pred             HHHHHHhh-cCh------HHHHHH-HHHHhccCCCcEEE
Confidence            52 22211 122      234566 6778888 786554

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=81.63  E-value=21  Score=31.80  Aligned_cols=96  Identities=19%  Similarity=0.179  Sum_probs=55.5

Q ss_pred             eEEEEeccch--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc---cCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          105 TIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN---KEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       105 ~VL~IG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~---~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      +|.+||+|.=  .++..+++. + -+|++++.+++.++..++.....   ......++++. ..|..+.+    +..|+|
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~D~v   75 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARN-G-HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEAL----ADADLI   75 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHHH----hCCCEE
Confidence            6999999743  344555553 3 47999999998887766542110   00000112322 23433333    357999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ++-.++.         ...+.++. +...++++.+++.
T Consensus        76 i~~v~~~---------~~~~v~~~-l~~~~~~~~~vi~  103 (325)
T PRK00094         76 LVAVPSQ---------ALREVLKQ-LKPLLPPDAPIVW  103 (325)
T ss_pred             EEeCCHH---------HHHHHHHH-HHhhcCCCCEEEE
Confidence            9886531         24566777 6778888876653

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=81.56  E-value=4.3  Score=37.86  Aligned_cols=43  Identities=5%  Similarity=0.079  Sum_probs=34.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (257)
                      .+..+||.|..|+......+++.|  ++|++||+||.-..+.+-.
T Consensus        34 ~~~d~vl~ItSaG~N~L~yL~~~P--~~I~aVDlNp~Q~aLleLK   76 (380)
T PF11899_consen   34 GPDDRVLTITSAGCNALDYLLAGP--KRIHAVDLNPAQNALLELK   76 (380)
T ss_pred             CCCCeEEEEccCCchHHHHHhcCC--ceEEEEeCCHHHHHHHHHH
Confidence            355689999998777777777643  6999999999998876643

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=81.53  E-value=3.9  Score=34.52  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=25.5

Q ss_pred             HhhcCCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEEC
Q 025141           96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDI  134 (257)
Q Consensus        96 ~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEi  134 (257)
                      |+....+.++||+||+|.=+.  ++.+++. + .+|++|+.
T Consensus         3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~-g-a~V~VIs~   41 (202)
T PRK06718          3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKY-G-AHIVVISP   41 (202)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHC-C-CeEEEEcC
Confidence            555567889999999986554  3445553 3 58988853

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=81.50  E-value=1.9  Score=42.86  Aligned_cols=34  Identities=21%  Similarity=0.458  Sum_probs=25.7

Q ss_pred             CCCeEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~  136 (257)
                      +..+||++|+|+ |+. ++.|++ .++.+++.||-|.
T Consensus       337 ~~~kVLIvGaGGLGs~VA~~La~-~GVg~ItlVD~D~  372 (664)
T TIGR01381       337 SQLKVLLLGAGTLGCNVARCLIG-WGVRHITFVDNGK  372 (664)
T ss_pred             hcCeEEEECCcHHHHHHHHHHHH-cCCCeEEEEcCCE
Confidence            367999999997 654 455555 5789999999764

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=81.39  E-value=5.4  Score=41.89  Aligned_cols=52  Identities=21%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             CchhHHHHHHHHHh--hcCCCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCH
Q 025141           84 DEFIYHESLVHPAL--LHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus        84 ~~~~y~e~l~~~~l--~~~~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~  136 (257)
                      |+..|.+.+.....  ...-...+||++|+|+=+  ++..+. ..++.+++.+|-+.
T Consensus         3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~-laGVg~iti~D~d~   58 (1008)
T TIGR01408         3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLV-LAGVKSVTLHDTEK   58 (1008)
T ss_pred             hHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCe
Confidence            34456655432221  112245799999996422  223333 36889999999775

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=81.24  E-value=2.3  Score=36.98  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=26.5

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHH
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEV  138 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~v  138 (257)
                      +..+||++|+|+ |+.....+...++.+++.+|-|..-
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve   60 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS   60 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence            457899999874 5554444555688999999877543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=81.06  E-value=8.9  Score=33.87  Aligned_cols=93  Identities=16%  Similarity=0.231  Sum_probs=51.9

Q ss_pred             eEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEE---EEcchHHHHhcCCCceeE
Q 025141          105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLEL---VINDARAELESRKESYDV  178 (257)
Q Consensus       105 ~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~i---~~~Da~~~l~~~~~~fDv  178 (257)
                      +|++||+|.-+.  +..+.+. + .+|+.++. ++.++..++. +....   ......+   ...|.    ....+.+|+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~-g-~~V~~~~r-~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~----~~~~~~~d~   71 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA-G-RDVTFLVR-PKRAKALRERGLVIRS---DHGDAVVPGPVITDP----EELTGPFDL   71 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-C-CceEEEec-HHHHHHHHhCCeEEEe---CCCeEEecceeecCH----HHccCCCCE
Confidence            699999987654  4444443 3 47999988 6666665543 21111   0111111   01121    111267999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      |++-....         ...+.++. ++..++++.+++.
T Consensus        72 vilavk~~---------~~~~~~~~-l~~~~~~~~~ii~  100 (305)
T PRK12921         72 VILAVKAY---------QLDAAIPD-LKPLVGEDTVIIP  100 (305)
T ss_pred             EEEEeccc---------CHHHHHHH-HHhhcCCCCEEEE
Confidence            99876432         23566777 6778888876653

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=80.97  E-value=23  Score=31.55  Aligned_cols=34  Identities=21%  Similarity=0.443  Sum_probs=22.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHh---cCCCcEEEEEECCH
Q 025141          101 PNPKTIFIMGGGEGSTAREILR---HKTVEKVVMCDIDE  136 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~  136 (257)
                      .+.+++|++|+| |. ++.++.   ..+..+|+++..++
T Consensus       124 ~~~k~vlI~GAG-Ga-grAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAG-GA-ATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCc-HH-HHHHHHHHHHCCCCEEEEEeCCc
Confidence            356899999996 33 233222   23556799999985

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=80.85  E-value=10  Score=32.53  Aligned_cols=70  Identities=31%  Similarity=0.401  Sum_probs=46.9

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcCC-CceeE
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESYDV  178 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~~-~~fDv  178 (257)
                      ++++++|+|.=+  +++.|.+. + ..|+++|.|++.++....-         ..-...+++|+.+  .|++.+ ..+|+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~-g-~~Vv~Id~d~~~~~~~~~~---------~~~~~~v~gd~t~~~~L~~agi~~aD~   69 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEE-G-HNVVLIDRDEERVEEFLAD---------ELDTHVVIGDATDEDVLEEAGIDDADA   69 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhC-C-CceEEEEcCHHHHHHHhhh---------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence            478999998533  45666654 2 4899999999997773321         1234667777743  455543 78999


Q ss_pred             EEEcCC
Q 025141          179 IIGDLA  184 (257)
Q Consensus       179 Ii~D~~  184 (257)
                      ++....
T Consensus        70 vva~t~   75 (225)
T COG0569          70 VVAATG   75 (225)
T ss_pred             EEEeeC
Confidence            888765

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=80.77  E-value=2.7  Score=39.17  Aligned_cols=58  Identities=14%  Similarity=0.215  Sum_probs=44.5

Q ss_pred             CCeEEEEcchHHHHhcC-CCceeE-EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          156 PRLELVINDARAELESR-KESYDV-IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       156 ~rv~i~~~Da~~~l~~~-~~~fDv-Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .++++++++..++++.. ++++|. |++|..| |. .+  .. -.+.++. +.+.++|||.++...
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~D-wm-~~--~~-~~~~~~~-l~~~~~pgaRV~~Rs  334 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMD-WM-DP--EQ-LNEEWQE-LARTARPGARVLWRS  334 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhh-hC-CH--HH-HHHHHHH-HHHHhCCCCEEEEee
Confidence            79999999999999865 688996 7778775 31 22  22 2456777 799999999999865

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK06194 hypothetical protein; Provisional

Probab=80.74  E-value=11  Score=32.64  Aligned_cols=77  Identities=17%  Similarity=0.191  Sum_probs=46.2

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--H----h--
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--L----E--  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l----~--  170 (257)
                      +.++||+.|+++|.   +++++++. + .+|++++.+++..+...+.+..     ...++.++..|..+.  +    .  
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~   77 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAAL-G-MKLVLADVQQDALDRAVAELRA-----QGAEVLGVRTDVSDAAQVEALADAA   77 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHC-C-CEEEEEeCChHHHHHHHHHHHh-----cCCeEEEEECCCCCHHHHHHHHHHH
Confidence            35789998876443   34444443 4 5899999987665544333221     124677788876432  1    1  


Q ss_pred             -cCCCceeEEEEcCCC
Q 025141          171 -SRKESYDVIIGDLAD  185 (257)
Q Consensus       171 -~~~~~fDvIi~D~~~  185 (257)
                       ...++.|+|+..+..
T Consensus        78 ~~~~g~id~vi~~Ag~   93 (287)
T PRK06194         78 LERFGAVHLLFNNAGV   93 (287)
T ss_pred             HHHcCCCCEEEECCCC
Confidence             122468999998753

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=80.61  E-value=23  Score=33.31  Aligned_cols=106  Identities=19%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH----H-----HhcC--
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA----E-----LESR--  172 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~----~-----l~~~--  172 (257)
                      .+|-++|+|==+++..+.-.....+|+++|||+..++..++--           ..+..-|...    -     ++.+  
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~-----------~~i~e~~~~~~v~~~v~~g~lraTtd   78 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE-----------SYIEEPDLDEVVKEAVESGKLRATTD   78 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc-----------ceeecCcHHHHHHHHHhcCCceEecC
Confidence            6788999986665544433222358999999999998876521           1111111111    1     1111  


Q ss_pred             C---CceeEEEEcCCCCCCC--CcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          173 K---ESYDVIIGDLADPIEG--GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       173 ~---~~fDvIi~D~~~~~~~--~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      .   ...|++++..+-|...  .| .--|-...-+. +++.|++|-.+++.+..|
T Consensus        79 ~~~l~~~dv~iI~VPTPl~~~~~p-Dls~v~~aa~s-Ia~~L~kG~LVIlEST~~  131 (436)
T COG0677          79 PEELKECDVFIICVPTPLKKYREP-DLSYVESAARS-IAPVLKKGDLVILESTTP  131 (436)
T ss_pred             hhhcccCCEEEEEecCCcCCCCCC-ChHHHHHHHHH-HHHhcCCCCEEEEecCCC
Confidence            1   2689888887755432  22 11223345566 689999999999987544

>PRK08507 prephenate dehydrogenase; Validated

Probab=80.18  E-value=13  Score=32.55  Aligned_cols=88  Identities=19%  Similarity=0.164  Sum_probs=52.0

Q ss_pred             eEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       105 ~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      +|.+||+|.  +.+++.+.+.....+|+++|.+++..+.+++. +..     + .    ..+..+ +.   + .|+||+-
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~~-----~-~----~~~~~~-~~---~-aD~Vila   65 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GLV-----D-E----IVSFEE-LK---K-CDVIFLA   65 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CCC-----c-c----cCCHHH-Hh---c-CCEEEEe
Confidence            688999875  44566666542224799999999887776542 110     0 0    112222 21   2 7999988


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      .+..         ...+.+.. +.. ++++.+++ ..+
T Consensus        66 vp~~---------~~~~~~~~-l~~-l~~~~iv~-d~g   91 (275)
T PRK08507         66 IPVD---------AIIEILPK-LLD-IKENTTII-DLG   91 (275)
T ss_pred             CcHH---------HHHHHHHH-Hhc-cCCCCEEE-ECc
Confidence            6532         13456677 577 88776554 443

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=80.03  E-value=15  Score=33.45  Aligned_cols=97  Identities=18%  Similarity=0.218  Sum_probs=54.7

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvI  179 (257)
                      +.++||+.|+|. |..+.++++..+...+++++.+++-.+.++++ ...      .-+.....+..+.+. .....+|+|
T Consensus       186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~~------~~i~~~~~~~~~~v~~~~~~~~d~v  258 (365)
T cd08278         186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GAT------HVINPKEEDLVAAIREITGGGVDYA  258 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------EEecCCCcCHHHHHHHHhCCCCcEE
Confidence            457899997643 34555666666666799999999888877753 110      000000112222222 124569988


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +--...     +       ..+.. +.+.|+++|.++.-
T Consensus       259 ld~~g~-----~-------~~~~~-~~~~l~~~G~~v~~  284 (365)
T cd08278         259 LDTTGV-----P-------AVIEQ-AVDALAPRGTLALV  284 (365)
T ss_pred             EECCCC-----c-------HHHHH-HHHHhccCCEEEEe
Confidence            754321     1       12344 45678888887753

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=80.01  E-value=6.4  Score=37.28  Aligned_cols=33  Identities=15%  Similarity=0.291  Sum_probs=24.9

Q ss_pred             CCCeEEEEeccchHHHHHHHh---cCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGEGSTAREILR---HKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~  136 (257)
                      ...+||+||+|+  ++.++++   .+++.++|.+|-+.
T Consensus        19 ~~s~VlliG~gg--lGsEilKNLvL~GIg~~tIvD~~~   54 (425)
T cd01493          19 ESAHVCLLNATA--TGTEILKNLVLPGIGSFTIVDGSK   54 (425)
T ss_pred             hhCeEEEEcCcH--HHHHHHHHHHHcCCCeEEEECCCc
Confidence            457999999863  5555555   47899999998764

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	257
3anx_A	314	Crystal Structure Of TriamineAGMATINE AMINOPROPYLTR		1e-49
1uir_A	314	Crystal Structure Of Polyamine Aminopropyltransfeas		4e-49
3o4f_A	294	Crystal Structure Of Spermidine Synthase From E. Co		2e-39
1xj5_A	334	X-Ray Structure Of Spermidine Synthase From Arabido		2e-34
2o05_A	304	Human Spermidine Synthase Length = 304		8e-33
3rw9_A	304	Crystal Structure Of Human Spermidine Synthase In C		1e-32
1iy9_A	275	Crystal Structure Of Spermidine Synthase Length = 2		2e-32
1jq3_A	296	Crystal Structure Of Spermidine Synthase In Complex		6e-32
1mjf_A	281	Putative Spermidine Synthetase From Pyrococcus Furi		3e-31
2b2c_A	314	Cloning, Expression, Characterisation And Three- Di		2e-30
3bwb_A	304	Crystal Structure Of The Apo Form Of Spermidine Syn		1e-29
2hte_A	283	The Crystal Structure Of Spermidine Synthase From P		5e-26
2pwp_A	282	Crystal Structure Of Spermidine Synthase From Plasm		6e-26
2pss_A	321	The Structure Of Plasmodium Falciparum Spermidine S		6e-26
2e5w_A	280	Crystal Structure Of Spermidine Synthase From Pyroc		3e-24

>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus, Complexed With Mta Length = 314

Iteration: 1
 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/200 (49%), Positives = 135/200 (67%), Gaps = 4/200 (2%)
Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
           +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE+LVHPA+L HP PK 
Sbjct: 21  MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80
Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIND 164
           + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   ++ AF DPR  LVI+D
Sbjct: 81  VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140
Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           ARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  LNP G+   QAG   
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQAG-MI 198
Query: 224 IFSHTEVFSCIYNTLRQVFK 243
           + +H  V   ++ T+R+ F+
Sbjct: 199 LLTHHRVHPVVHRTVREAFR 218

>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From Thermus Thermophilus Length = 314

Iteration: 1
 Score =  191 bits (485), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 97/200 (48%), Positives = 134/200 (67%), Gaps = 4/200 (2%)
Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
           +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE+LVHPA+L HP PK 
Sbjct: 21  MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80
Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIND 164
           + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   ++ AF DPR  LVI+D
Sbjct: 81  VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140
Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           ARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  LNP G+   Q G   
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQTG-MI 198
Query: 224 IFSHTEVFSCIYNTLRQVFK 243
           + +H  V   ++ T+R+ F+
Sbjct: 199 LLTHHRVHPVVHRTVREAFR 218

>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli Length = 294

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 28  KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFI 87
           K  W+E  + +     FA++++L+  +T +QD+ + +   FG+ + +DG +Q+ E DEFI
Sbjct: 10  KKQWHET-LHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFI 68
Query: 88  YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147
           YHE + H  LL H + K + I+GGG+G+  RE+ RHK VE + M +ID  VV FC+ YL 
Sbjct: 69  YHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 128
Query: 148 V-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206
             N  ++ DPR +LVI+D    +    +++DVII D  DPI  GP   L+T +FYE   K
Sbjct: 129 NHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYE-GCK 185
Query: 207 PRLNPEGIFVTQAG 220
             LNP GIFV Q G
Sbjct: 186 RCLNPGGIFVAQNG 199

>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis Thaliana Gene At1g23820 Length = 334

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 6/202 (2%)
Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
           S  +  +L  G++ YQD+ +  +  +GK LV+DG +Q  E DE  Y E + H  L   PN
Sbjct: 61  SLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEXITHLPLCSIPN 120
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
           PK + ++GGG+G   RE+ RH ++E++  C+ID+ VV+  K +       + DPR+ LVI
Sbjct: 121 PKKVLVIGGGDGGVLREVARHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRVNLVI 180
Query: 163 NDARAELESRKE-SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
            D  A L++  E SYD +I D +DPI  GP  +L+ K F++ V +  L P G+  TQA  
Sbjct: 181 GDGVAFLKNAAEGSYDAVIVDSSDPI--GPAKELFEKPFFQSVAR-ALRPGGVVCTQA-- 235
Query: 222 AGIFSHTEVFSCIYNTLRQVFK 243
             ++ H ++   I +  R++FK
Sbjct: 236 ESLWLHXDIIEDIVSNCREIFK 257

>pdb|2O05|A Chain A, Human Spermidine Synthase Length = 304

Iteration: 1
 Score =  137 bits (344), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 116/211 (54%), Gaps = 5/211 (2%)
Query: 11  SQANGADAKNVALTGYRKSCWYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPF 68
           S   G D    +     +  W+ E   +      S  +  +LH   +RYQDI +  +K +
Sbjct: 2   SMEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTY 61
Query: 69  GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEK 128
           G  LV+DG +Q  E DEF Y E + +  L  HPNP+ + I+GGG+G   RE+++H +VE 
Sbjct: 62  GNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVES 121
Query: 129 VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE 188
           VV C+IDE+V++  K +L      +S  +L L + D    ++  ++++DVII D +DP+ 
Sbjct: 122 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM- 180
Query: 189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
            GP   L+ +S+Y+ ++K  L  +G+   Q 
Sbjct: 181 -GPAESLFKESYYQ-LMKTALKEDGVLCCQG 209

>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex With Decarboxylated S-Adenosylhomocysteine Length = 304

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 5/207 (2%)
Query: 15  GADAKNVALTGYRKSCWYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKAL 72
           G D    +     +  W+ E   +      S  +  +LH   +RYQDI +  +K +G  L
Sbjct: 6   GPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVL 65
Query: 73  VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMC 132
           V+DG +Q  E DEF Y E + +  L  HPNP+ + I+GGG+G   RE+++H +VE VV C
Sbjct: 66  VLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQC 125
Query: 133 DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPC 192
           +IDE+V++  K +L      +S  +L L + D    ++  ++++DVII D +DP+  GP 
Sbjct: 126 EIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM--GPA 183
Query: 193 YKLYTKSFYEFVVKPRLNPEGIFVTQA 219
             L+ +S+Y+ ++K  L  +G+   Q 
Sbjct: 184 ESLFKESYYQ-LMKTALKEDGVLCCQG 209

>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase Length = 275

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 114/190 (60%), Gaps = 3/190 (1%)
Query: 30  CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYH 89
            WY E+  +N   +  +N  LHT +T +Q + +++T+ FG  L +DG + ++E DEF+YH
Sbjct: 3   LWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYH 62
Query: 90  ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149
           E + H  L  HPNP+ + ++GGG+G   REIL+H +V+K  + DID +V+E+ K +L   
Sbjct: 63  EMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI 122
Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
                DPR+++ ++D    +   +  YDVI+ D  +P+  GP   L+TK FY  + K  L
Sbjct: 123 AGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAGIAK-AL 179
Query: 210 NPEGIFVTQA 219
             +GIFV Q 
Sbjct: 180 KEDGIFVAQT 189

>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With Transition State Analogue Adodato Length = 296

Iteration: 1
 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 5/217 (2%)
Query: 27  RKSCWY-EEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
           R+  WY E     N+     +N ++++G++  Q I + +    G    +DG   + E DE
Sbjct: 14  RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDE 73
Query: 86  FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
           F+YHE L H  +  HPNPK + I+GGG+G T RE+L+H +VEK ++C++D  V+E  + Y
Sbjct: 74  FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY 133
Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
           L      F DPR E+VI +    +   K  +DVII D  DP  G   + L+T+ FY+   
Sbjct: 134 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGH-LFTEEFYQ-AC 191
Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242
              L  +G+F  +      F     F   Y  + +VF
Sbjct: 192 YDALKEDGVFSAETEDP--FYDIGWFKLAYRRISKVF 226

>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus Pfu- 132382 Length = 281

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 121/206 (58%), Gaps = 13/206 (6%)
Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
           +F +   ++   ++YQ I + +T+ FG+ L +DG +Q   + E  YHE LVHPA+L HP 
Sbjct: 16  AFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPK 75
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK---EAFSDPRLE 159
           PK + ++GGG+G T RE+L+H  V++V+M +IDE+V+   K  + ++    EA  + + E
Sbjct: 76  PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHE 134
Query: 160 ---LVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
              L I D   E       +DVII D  DP+  GP   L+++ FY +V     NP GI+V
Sbjct: 135 KAKLTIGDG-FEFIKNNRGFDVIIADSTDPV--GPAKVLFSEEFYRYVYDALNNP-GIYV 190
Query: 217 TQAGPAGIFSHTEVFSCIYNTLRQVF 242
           TQAG   +F+  E+ S  Y  +++VF
Sbjct: 191 TQAGSVYLFT-DELISA-YKEMKKVF 214

>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three- Dimensional Structure Determination Of The Caenorhabditis Elegans Spermidine Synthase Length = 314

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 121/201 (60%), Gaps = 5/201 (2%)
Query: 42  WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
           +S  +  +L   +++YQD+ + ++  +G  LV+DG +Q+ E DEF Y E L H  +  HP
Sbjct: 48  FSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHP 107
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
           +PK + I+GGG+G   RE+L+H++VEKV MC+IDE V++  K +L      FS P+L+L 
Sbjct: 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF 167
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
             D    L++ K  +DVII D +DP+  GP   L+ +S+YE +++  L  +GI  +Q   
Sbjct: 168 CGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYE-LLRDALKEDGILSSQG-- 222
Query: 222 AGIFSHTEVFSCIYNTLRQVF 242
             ++ H  + + +    R++F
Sbjct: 223 ESVWLHLPLIAHLVAFNRKIF 243

>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase From Trypanosoma Cruzi At 2.5 A Resolution Length = 304

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 15/198 (7%)
Query: 31  WYEEEIEENLRW-----SFALNSILHTGETRYQDIALLDTKP---FGKALVIDGKLQSAE 82
           W+ EE   N +W     S  +  +L+   T++Q + + ++ P   +G    +DG +Q  +
Sbjct: 19  WFREE---NDQWPGQAXSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVXALDGCIQVTD 75
Query: 83  VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC 142
            DEF+YHE L H +L  HP P+ + I+GGG+G   RE+LRH TVE   + DID EV E  
Sbjct: 76  YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVXEQS 135
Query: 143 KSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFY 201
           K +      + +DPR  + + D  A + ++   +YDV+I D  DP   GP  KL+ ++FY
Sbjct: 136 KQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDP--AGPASKLFGEAFY 193
Query: 202 EFVVKPRLNPEGIFVTQA 219
           + V++  L P+GI   Q 
Sbjct: 194 KDVLR-ILKPDGICCNQG 210

>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P. Falciparum In Complex With 5'-Methylthioadenosine Length = 283

Iteration: 1
 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 18/222 (8%)
Query: 42  WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
           +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF YHE + H  +    
Sbjct: 18  FSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSK 77
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
            PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y       + D R+ + 
Sbjct: 78  EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF 137
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
           I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    L P G  V Q   
Sbjct: 138 IEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA-LKPNGYCVAQC-- 192
Query: 222 AGIFSHTEVFSCIYNTLRQVFK-------------CGCCALF 250
             ++ H      +    +++FK             CGC  + 
Sbjct: 193 ESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 234

>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium Falciparum In Complex With Spermidine Length = 282

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 18/222 (8%)
Query: 42  WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
           +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF YHE + H  +    
Sbjct: 17  FSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSK 76
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
            PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y       + D R+ + 
Sbjct: 77  EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF 136
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
           I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    L P G  V Q   
Sbjct: 137 IEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA-LKPNGYCVAQC-- 191
Query: 222 AGIFSHTEVFSCIYNTLRQVFK-------------CGCCALF 250
             ++ H      +    +++FK             CGC  + 
Sbjct: 192 ESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 233

>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase In Its Apo- Form Length = 321

Iteration: 1
 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 18/222 (8%)
Query: 42  WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
           +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF YHE + H  +    
Sbjct: 56  FSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSK 115
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
            PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y       + D R+ + 
Sbjct: 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF 175
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
           I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    L P G  V Q   
Sbjct: 176 IEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA-LKPNGYCVAQC-- 230
Query: 222 AGIFSHTEVFSCIYNTLRQVFK-------------CGCCALF 250
             ++ H      +    +++FK             CGC  + 
Sbjct: 231 ESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 272

>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus Horikoshii Ot3 Length = 280

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 123/206 (59%), Gaps = 12/206 (5%)
Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
           +F +   +   ++ YQ I + +T+ FGK L IDG +Q     E  YHE LVHPA+L HPN
Sbjct: 17  AFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAMLAHPN 76
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN----KEAFSDP-- 156
           P+ + I+GGG+G   RE+L+H+ VE+V+M +ID++V+E    Y+ ++    ++  SD   
Sbjct: 77  PRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKYIGIDGGILEKMLSDKHE 136
Query: 157 RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
           + +L+I D    +E     +DVII D  DP+  GP   L+++ FY+   +  LN  GI+V
Sbjct: 137 KGKLIIGDGVKFIEEN-SGFDVIIVDSTDPV--GPAEMLFSEEFYKNAYRA-LNDPGIYV 192
Query: 217 TQAGPAGIFSHTEVFSCIYNTLRQVF 242
           TQAG   +F  T+ F   Y  +R+VF
Sbjct: 193 TQAGSVYLF--TDEFLTAYRKMRKVF 216

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	1e-110
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	1e-110
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	1e-109
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	1e-109
2o07_A	304	Spermidine synthase; structural genomics, structur	1e-108
2i7c_A	283	Spermidine synthase; transferase, structural genom	1e-107
2pt6_A	321	Spermidine synthase; transferase, structural genom	1e-106
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	1e-106
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	1e-104
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	1e-104
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	8e-98
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	8e-82
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	1e-79
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	1e-43
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	5e-09
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-08
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	4e-05
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	4e-04
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	5e-04

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296

 Score =  319 bits (820), Expect = e-110
 Identities = 73/218 (33%), Positives = 112/218 (51%), Gaps = 5/218 (2%)

Query: 27  RKSCWY-EEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
           R+  WY E     N+     +N ++++G++  Q I + +    G    +DG   + E DE
Sbjct: 14  RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDE 73

Query: 86  FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
           F+YHE L H  +  HPNPK + I+GGG+G T RE+L+H +VEK ++C++D  V+E  + Y
Sbjct: 74  FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY 133

Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
           L      F DPR E+VI +    +   K  +DVII D  DP   G    L+T+ FY+   
Sbjct: 134 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTA-GQGGHLFTEEFYQACY 192

Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
              L  +G+F  +      F     F   Y  + +VF 
Sbjct: 193 D-ALKEDGVFSAETE--DPFYDIGWFKLAYRRISKVFP 227

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314

 Score =  319 bits (819), Expect = e-110
 Identities = 98/215 (45%), Positives = 137/215 (63%), Gaps = 4/215 (1%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           ++ E +         +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE
Sbjct: 6   YFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHE 65

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VN 149
           +LVHPA+L HP PK + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   +
Sbjct: 66  TLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWH 125

Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPR 208
           + AF DPR  LVI+DARA LE  +E YDV+I DL DP+ E  P   LYT  FY   VK  
Sbjct: 126 QGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRL-VKAH 184

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           LNP G+   Q G   + +H  V   ++ T+R+ F+
Sbjct: 185 LNPGGVMGMQTGMI-LLTHHRVHPVVHRTVREAFR 218

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Length = 275

 Score =  315 bits (809), Expect = e-109
 Identities = 73/213 (34%), Positives = 124/213 (58%), Gaps = 5/213 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           WY E+  +N   +  +N  LHT +T +Q + +++T+ FG  L +DG + ++E DEF+YHE
Sbjct: 4   WYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHE 63

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            + H  L  HPNP+ + ++GGG+G   REIL+H +V+K  + DID +V+E+ K +L    
Sbjct: 64  MVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA 123

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
               DPR+++ ++D    +   +  YDVI+ D  +P+  GP   L+TK FY  + K  L 
Sbjct: 124 GKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAGIAK-ALK 180

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
            +GIFV Q      +   E+ + +   ++++F 
Sbjct: 181 EDGIFVAQTDN--PWFTPELITNVQRDVKEIFP 211

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Length = 304

 Score =  313 bits (804), Expect = e-108
 Identities = 72/235 (30%), Positives = 122/235 (51%), Gaps = 7/235 (2%)

Query: 11  SQANGADAKNVALTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPF 68
           S   G D    +     +  W+ E          S  +  +LH   +RYQDI +  +K +
Sbjct: 2   SMEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTY 61

Query: 69  GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEK 128
           G  LV+DG +Q  E DEF Y E + +  L  HPNP+ + I+GGG+G   RE+++H +VE 
Sbjct: 62  GNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVES 121

Query: 129 VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE 188
           VV C+IDE+V++  K +L      +S  +L L + D    ++  ++++DVII D +DP+ 
Sbjct: 122 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM- 180

Query: 189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
            GP   L+ +S+Y+  +K  L  +G+   Q      + H ++   +    + +F 
Sbjct: 181 -GPAESLFKESYYQL-MKTALKEDGVLCCQGEC--QWLHLDLIKEMRQFCQSLFP 231

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Length = 283

 Score =  311 bits (798), Expect = e-107
 Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 7/215 (3%)

Query: 31  WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E         +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF Y
Sbjct: 5   WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 64

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
           HE + H  +     PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y   
Sbjct: 65  HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 124

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
               + D R+ + I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    
Sbjct: 125 ISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYN-A 181

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           L P G  V Q     ++ H      +    +++FK
Sbjct: 182 LKPNGYCVAQCES--LWIHVGTIKNMIGYAKKLFK 214

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Length = 321

 Score =  310 bits (797), Expect = e-106
 Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 7/215 (3%)

Query: 31  WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E         +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF Y
Sbjct: 43  WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 102

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
           HE + H  +     PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y   
Sbjct: 103 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 162

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
               + D R+ + I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    
Sbjct: 163 ISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYN-A 219

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           L P G  V Q     ++ H      +    +++FK
Sbjct: 220 LKPNGYCVAQCES--LWIHVGTIKNMIGYAKKLFK 252

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Length = 314

 Score =  308 bits (791), Expect = e-106
 Identities = 72/213 (33%), Positives = 120/213 (56%), Gaps = 5/213 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
                      +S  +  +L   +++YQD+ + ++  +G  LV+DG +Q+ E DEF Y E
Sbjct: 37  QEMGGAWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQE 96

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            L H  +  HP+PK + I+GGG+G   RE+L+H++VEKV MC+IDE V++  K +L    
Sbjct: 97  MLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS 156

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
             FS P+L+L   D    L++ K  +DVII D +DP+  GP   L+ +S+YE  ++  L 
Sbjct: 157 CGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYEL-LRDALK 213

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
            +GI  +Q     ++ H  + + +    R++F 
Sbjct: 214 EDGILSSQGES--VWLHLPLIAHLVAFNRKIFP 244

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Length = 281

 Score =  303 bits (777), Expect = e-104
 Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 13/219 (5%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
            + E        +F +   ++   ++YQ I + +T+ FG+ L +DG +Q   + E  YHE
Sbjct: 4   AFIEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHE 63

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            LVHPA+L HP PK + ++GGG+G T RE+L+H  V++V+M +IDE+V+   K  + ++ 
Sbjct: 64  PLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDN 122

Query: 151 EAF------SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFV 204
                       + +L I D    ++     +DVII D  DP+  GP   L+++ FY +V
Sbjct: 123 GLLEAMLNGKHEKAKLTIGDGFEFIK-NNRGFDVIIADSTDPV--GPAKVLFSEEFYRYV 179

Query: 205 VKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
               LN  GI+VTQAG   ++  T+     Y  +++VF 
Sbjct: 180 YD-ALNNPGIYVTQAGS--VYLFTDELISAYKEMKKVFD 215

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Length = 334

 Score =  304 bits (781), Expect = e-104
 Identities = 81/240 (33%), Positives = 127/240 (52%), Gaps = 8/240 (3%)

Query: 7   SNGISQANGADAKNVALTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLD 64
           +  +   NG   K  A        W+ E          S  +  +L  G++ YQD+ +  
Sbjct: 23  AATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQ 82

Query: 65  TKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHK 124
           +  +GK LV+DG +Q  E DE  Y E + H  L   PNPK + ++GGG+G   RE+ RH 
Sbjct: 83  SATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHA 142

Query: 125 TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDL 183
           ++E++ MC+ID+ VV+  K +       + DPR+ LVI D  A L++  E SYD +I D 
Sbjct: 143 SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDS 202

Query: 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           +DPI  GP  +L+ K F++ V +  L P G+  TQA    ++ H ++   I +  R++FK
Sbjct: 203 SDPI--GPAKELFEKPFFQSVAR-ALRPGGVVCTQAE--SLWLHMDIIEDIVSNCREIFK 257

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Length = 304

 Score =  287 bits (736), Expect = 8e-98
 Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 11/222 (4%)

Query: 28  KSCWYEEEIEE--NLRWSFALNSILHTGETRYQDIALLDTKP---FGKALVIDGKLQSAE 82
              W+ EE ++      S  +  +L+   T++Q + + ++ P   +G  + +DG +Q  +
Sbjct: 16  SGGWFREENDQWPGQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTD 75

Query: 83  VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC 142
            DEF+YHE L H +L  HP P+ + I+GGG+G   RE+LRH TVE   + DID EV+E  
Sbjct: 76  YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQS 135

Query: 143 KSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFY 201
           K +      + +DPR  + + D  A + ++   +YDV+I D  DP   GP  KL+ ++FY
Sbjct: 136 KQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPA--GPASKLFGEAFY 193

Query: 202 EFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           + V++  L P+GI   Q     I+   E+   +   +R+   
Sbjct: 194 KDVLR-ILKPDGICCNQGES--IWLDLELIEKMSRFIRETGF 232

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Length = 262

 Score =  239 bits (612), Expect = 1e-79
 Identities = 35/225 (15%), Positives = 75/225 (33%), Gaps = 21/225 (9%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W  +EI   LR  + + + L    + +  + +  +K FG+  +++ +L   +    I  E
Sbjct: 2   WITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQLLF-KNFLHIESE 60

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            L H         K + I+ G +   A ++ ++     +     DE++++   S+     
Sbjct: 61  LLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD--THIDFVQADEKILDSFISFF---- 114

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
             F + +       A+  L+   + YD+I       I       L             L 
Sbjct: 115 PHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQEPDI--HRIDGLKR----------MLK 162

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF 255
            +G+F++ A                  +  VF      +      
Sbjct: 163 EDGVFISVAKH--PLLEHVSMQNALKNMGGVFSVAMPFVAPLRIL 205

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317

 Score =  149 bits (377), Expect = 1e-43
 Identities = 46/209 (22%), Positives = 72/209 (34%), Gaps = 24/209 (11%)

Query: 48  SILHTGETRYQDIALLD--TKPFGKALVIDGKLQSA------EVDEFIYHESLVHPALLH 99
            I  T E  Y  I L        G  + I+G   S       +  EF Y   +   A   
Sbjct: 22  PIAGTYEGEYSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAF 81

Query: 100 -----HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS 154
                  +   I  +GGG  + AR         +  + ++D E+    + +     +   
Sbjct: 82  IDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWF----DIPR 137

Query: 155 DPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213
            PR+++ ++DAR   ES    S DVII D+             T  F+E      L P G
Sbjct: 138 APRVKIRVDDARMVAESFTPASRDVIIRDVFAG--AITPQNFTTVEFFE-HCHRGLAPGG 194

Query: 214 IFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242
           ++V   G     S           + +VF
Sbjct: 195 LYVANCGD---HSDLRGAKSELAGMMEVF 220

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 54.2 bits (130), Expect = 5e-09
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 17/143 (11%)

Query: 96  ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAFS 154
           A L   N + +  +G G+G+  + +L+    E++   D+    +E  +  L  +      
Sbjct: 23  AALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQ 82

Query: 155 DPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI 214
             RL+L+        + R   YD     + + IE     +L     +E V+     P+ +
Sbjct: 83  WERLQLIQGAL-TYQDKRFHGYDAAT--VIEVIEHLDLSRLGA---FERVLFEFAQPKIV 136

Query: 215 FVT----------QAGPAGIFSH 227
            VT             PAG   H
Sbjct: 137 IVTTPNIEYNVKFANLPAGKLRH 159

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 96  ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD 155
           A+L   N K +  +G GEG+    +L+ K+ E++   D+   V+E  K  L +++     
Sbjct: 23  AVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQ 82

Query: 156 PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215
            +   +   +    + R   YD     + + IE     +L     +E V+     P+ + 
Sbjct: 83  RKRISLFQSSLVYRDKRFSGYDAAT--VIEVIEHLDENRLQA---FEKVLFEFTRPQTVI 137

Query: 216 VT 217
           V+
Sbjct: 138 VS 139

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164
           T++ +GGG GS A E LR       V  +I EE  E   S    N           V   
Sbjct: 28  TLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS----NAINLGVSDRIAVQQG 83

Query: 165 ARAELESRKESYDVIIGDLADPIEG 189
           A    +   ++ DVI         G
Sbjct: 84  APRAFDDVPDNPDVIFIGGGLTAPG 108

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 11/99 (11%)

Query: 96  ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA--- 152
            LL+  NPK +       G            E+V + DI E+  E  K  +++N +    
Sbjct: 41  VLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR 100

Query: 153 --------FSDPRLELVINDARAELESRKESYDVIIGDL 183
                     +  + +  +DA   +  R   +  I  D 
Sbjct: 101 ESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP 139

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 13/90 (14%)

Query: 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADP 186
            +   D + E     K+     +  +S  R+  +++     +     +SY ++ G    P
Sbjct: 83  TLTCIDPESEHQRQAKALF--REAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ-VSP 139

Query: 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
           ++     K       +    P L   G  V
Sbjct: 140 MD----LKAL----VDAAW-PLLRRGGALV 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	100.0
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	100.0
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	100.0
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	100.0
2i7c_A	283	Spermidine synthase; transferase, structural genom	100.0
2o07_A	304	Spermidine synthase; structural genomics, structur	100.0
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	100.0
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	100.0
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	100.0
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	100.0
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	100.0
2pt6_A	321	Spermidine synthase; transferase, structural genom	100.0
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	100.0
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	100.0
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	100.0
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.98
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.6
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.59
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.55
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.54
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.53
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.53
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.52
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.51
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.51
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.51
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.51
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.5
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.5
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.5
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.49
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.49
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.49
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.48
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.47
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.47
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.47
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.47
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.47
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.46
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.46
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.46
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.45
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.45
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.45
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.44
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.44
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.44
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.43
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.43
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.43
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.43
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.43
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.43
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.42
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.42
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.42
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.41
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.41
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.41
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.41
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.4
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.4
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.39
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.38
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.38
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.37
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.37
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.37
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.36
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.36
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.36
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.35
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.35
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.35
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.35
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.35
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.34
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.34
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.34
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.33
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.33
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.33
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.33
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.33
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.33
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.33
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.33
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.32
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.32
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.32
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.32
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.31
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.31
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.31
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.31
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.31
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.3
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.3
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.3
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.3
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.29
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.29
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.29
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.29
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.29
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.29
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.28
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.28
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.27
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.27
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.27
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.27
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.26
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.26
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.26
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.26
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.26
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.26
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.25
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.25
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.25
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.25
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.25
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.25
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.25
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.24
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.24
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.24
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.24
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.24
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.24
3ocj_A	305	Putative exported protein; structural genomics, PS	99.23
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.23
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.23
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.23
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.23
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.23
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.23
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.23
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.23
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.22
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.22
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.22
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.22
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.22
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.21
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.21
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.21
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.21
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.21
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.21
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.21
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.2
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.2
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.2
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.2
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.19
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.19
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.19
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.19
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.19
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.19
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.19
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.19
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.19
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.19
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.18
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.18
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.17
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.17
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.17
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.17
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.17
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.17
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.16
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.16
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.16
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.16
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.16
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.16
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.15
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.15
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.15
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.15
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.14
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.14
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.14
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.14
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.14
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.13
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.13
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.13
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.12
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.12
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.1
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.1
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.09
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.09
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.08
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.08
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.07
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.07
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.07
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.07
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.06
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.06
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.04
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.04
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.04
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.04
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.04
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.03
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.03
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.03
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.03
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.03
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.02
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.02
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.01
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.99
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.99
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.99
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.98
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.98
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.97
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.97
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.97
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.97
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.97
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.95
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.94
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.94
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.93
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.93
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.92
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.91
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.9
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.88
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.87
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.84
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.83
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.82
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.82
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.81
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.81
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.8
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.79
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.78
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.78
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.77
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.76
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.76
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.74
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.73
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.73
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.73
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	98.72
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.72
3khk_A	544	Type I restriction-modification system methylation	98.72
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.71
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.7
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.7
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.7
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.69
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.68
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.68
3lkd_A	542	Type I restriction-modification system methyltrans	98.67
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.67
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.65
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.64
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.63
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.61
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.59
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.56
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.54
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.54
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.47
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.46
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.44
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.42
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.39
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.38
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.37
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	98.3
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.29
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.25
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.21
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.16
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.11
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.09
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.04
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.88
3ufb_A	530	Type I restriction-modification system methyltran	97.7
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.58
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.57
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.54
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.54
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.39
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.37
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.3
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.28
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.06
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.05
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.92
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.86
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.71
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.52
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.42
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.42
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.38
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.3
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.27
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.19
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.15
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.15
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.09
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.0
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.97
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.87
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.84
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.75
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.66
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.61
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.61
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.53
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.52
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.42
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.41
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.4
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.38
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.34
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.28
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.25
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.19
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.09
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.09
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.06
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.06
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.97
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.91
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	94.9
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.88
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.87
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.84
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.78
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.77
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.77
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	94.71
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.6
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	94.55
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.46
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.27
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.26
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.26
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.15
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	94.04
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.04
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.81
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.81
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	93.8
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	93.77
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.69
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	93.64
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	93.63
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.63
4eye_A	342	Probable oxidoreductase; structural genomics, niai	93.62
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.58
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	93.52
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.51
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.45
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	93.36
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.36
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.32
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.29
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.22
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.12
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	93.08
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.91
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	92.9
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	92.84
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.8
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	92.7
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	92.51
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	92.29
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	92.22
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.14
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	91.93
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	91.73
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	91.57
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	91.48
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	91.38
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	91.33
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	91.27
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.22
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.11
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.91
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	90.89
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	90.86
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	90.67
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	90.65
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	90.61
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	90.48
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.7
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	89.65
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	89.58
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	89.57
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	89.44
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	89.37
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	89.36
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	89.23
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	89.18
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	89.13
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	89.13
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	89.05
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	89.0
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	88.96
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	88.9
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	88.71
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	88.68
4g65_A	461	TRK system potassium uptake protein TRKA; structur	88.66
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	88.43
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	88.38
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	88.34
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	88.33
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	88.28
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	88.24
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	88.19
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	88.07
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	87.88
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	87.79
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	87.67
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	87.56
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	87.55
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	87.46
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	87.33
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	87.32
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	86.94
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	86.87
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	86.84
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	86.74
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	86.5
1id1_A	153	Putative potassium channel protein; RCK domain, E.	86.44
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	86.43
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	86.29
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	86.24
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	86.21
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	85.93
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	85.91
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	85.8
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	85.73
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	85.71
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	85.7
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	85.63
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	85.63
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	85.59
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	85.48
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	85.41
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	85.21
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	85.21
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	85.13
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	85.05
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	84.96
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	84.92
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	84.88
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	84.76
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	84.6
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	84.5
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	84.43
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	84.26
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	84.11
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	84.11
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	83.88
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	83.65
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	83.54
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	83.52
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	83.5
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	83.43
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	83.38
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	83.33
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	83.12
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	83.1
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	82.98
1lnq_A	336	MTHK channels, potassium channel related protein;	82.91
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	82.91
3imf_A	257	Short chain dehydrogenase; structural genomics, in	82.84
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	82.74
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	82.73
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	82.69
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	82.68
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	82.67
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	82.61
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	82.56
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	82.49
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	82.33
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	82.19
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	82.07
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	82.06
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	81.9

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=100.00  E-value=2.6e-51  Score=363.13  Aligned_cols=223  Identities=38%  Similarity=0.666  Sum_probs=204.0

Q ss_pred             cccCeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeE
Q 025141           27 RKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (257)
Q Consensus        27 ~~~~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~V  106 (257)
                      ....|+ |++.++.++.|.++++|++++|+||+|.|++++.+|++|+|||.+|+++.|++.|||||+|+|++.+++|++|
T Consensus         9 ~~~~w~-e~~~~~~~~~~~v~~vl~~~~S~yQ~i~v~~s~~~G~~L~LDg~~q~te~De~~YhE~l~h~~l~~~p~pk~V   87 (294)
T 3o4f_A            9 EKKQWH-ETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHV   87 (294)
T ss_dssp             -CEEEE-CCSSSSEEEEEEESEEEEEEC---CCEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEE
T ss_pred             ccccee-eeccCCcceEEEEeeEEEeccCCCceEEEEEcCCcceEEEECCchhhccccHHHHHHHHHHHHHhhCCCCCeE
Confidence            456798 5677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025141          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~  185 (257)
                      |+||+|+|++++++++++++.+|++|||||+|+++||+||+ .+.+.+++||++++++||++|++...++||+||+|+++
T Consensus        88 LIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~d  167 (294)
T 3o4f_A           88 LIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTD  167 (294)
T ss_dssp             EEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCC
T ss_pred             EEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEeCCC
Confidence            99999999999999999888999999999999999999997 45556789999999999999999988999999999999


Q ss_pred             CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCccc
Q 025141          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~  255 (257)
                      |.  +|+..|++++||+. ++++|+|||++++|.++|  +.+.+.+..+.++++++||.|.+|....|+|
T Consensus       168 p~--~~~~~L~t~eFy~~-~~~~L~p~Gv~v~q~~sp--~~~~~~~~~~~~~l~~~F~~v~~~~~~vPty  232 (294)
T 3o4f_A          168 PI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGVC--FLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY  232 (294)
T ss_dssp             CC--CTTCCSSCCHHHHH-HHHTEEEEEEEEEEEEES--SSCCHHHHHHHHHHHHHCSEEEEEEECCTTS
T ss_pred             cC--CCchhhcCHHHHHH-HHHHhCCCCEEEEecCCc--ccChHHHHHHHHHHHhhCCceeeeeeeeccC
Confidence            87  56678999999999 799999999999999888  6778889999999999999999998866655

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=100.00  E-value=3.2e-42  Score=313.46  Aligned_cols=222  Identities=21%  Similarity=0.340  Sum_probs=187.5

Q ss_pred             CcCCCCccccCeEEee--eccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHh
Q 025141           20 NVALTGYRKSCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPAL   97 (257)
Q Consensus        20 ~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l   97 (257)
                      .-+.|++.+++|+...  .+++...+|+++++|++++|+||+|.|++++.+||+|+|||.+|+++.| +.|+|+|+|+++
T Consensus       123 ~~~~~~~~rg~~~~~~~p~sdg~~~~y~v~~vl~~~~S~yQ~I~V~es~~~Gr~L~LDG~~Q~te~D-~~Y~e~l~h~~l  201 (381)
T 3c6k_A          123 VKRLPPIVRGGAIDRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSGK  201 (381)
T ss_dssp             EECCCCEEESCSSCCBCCCTTCCCBBCCEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTC-HHHHHHHTTTTC
T ss_pred             hcccCccccCCccCceeECCCCcEEEEEeEEEEEeCCCCCceEEEEEcCCcceEEEECCceeeeCCh-HHHHHHHHHHHh
Confidence            3456777778777655  4579999999999999999999999999999999999999999999998 679999999887


Q ss_pred             hcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCC---CCCeEEEEcchHHHHhc--
Q 025141           98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFS---DPRLELVINDARAELES--  171 (257)
Q Consensus        98 ~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~---~~rv~i~~~Da~~~l~~--  171 (257)
                      +. ++|++||+||+|+|++++++++++. ++|++|||||+|+++|++||+. .+..++   ++|++++++||++|++.  
T Consensus       202 ~~-~~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~  279 (381)
T 3c6k_A          202 ED-YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA  279 (381)
T ss_dssp             CC-CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH
T ss_pred             hc-CCCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhh
Confidence            65 4589999999999999999999875 7999999999999999999973 333333   46799999999999974  


Q ss_pred             -CCCceeEEEEcCCCCCC-C---CcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceE
Q 025141          172 -RKESYDVIIGDLADPIE-G---GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGC  246 (257)
Q Consensus       172 -~~~~fDvIi~D~~~~~~-~---~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~  246 (257)
                       ..++||+||+|++++.. .   ++...||+++||+. ++++|+|||++++|.++|  +. .+.++.+.++|+++|+.+.
T Consensus       280 ~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~-~~~~L~p~GVlv~Q~~s~--~~-~~~~~~i~~tl~~vF~~v~  355 (381)
T 3c6k_A          280 KEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL-SMKVLKQDGKYFTQGNCV--NL-TEALSLYEEQLGRLYCPVE  355 (381)
T ss_dssp             HHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHH-HHHTEEEEEEEEEEEEET--TC-HHHHHHHHHHHTTSSSCEE
T ss_pred             hccCceeEEEECCCCCcccCcccCcchHHHHHHHHHH-HHHhcCCCCEEEEecCCC--cc-hhHHHHHHHHHHHhCCcce
Confidence             45789999999986431 1   33457999999999 799999999999999887  43 5678899999999999886


Q ss_pred             EE
Q 025141          247 CA  248 (257)
Q Consensus       247 ~~  248 (257)
                      .+
T Consensus       356 ~~  357 (381)
T 3c6k_A          356 FS  357 (381)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=100.00  E-value=5.4e-41  Score=296.04  Aligned_cols=217  Identities=33%  Similarity=0.686  Sum_probs=197.3

Q ss_pred             cCeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEE
Q 025141           29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI  108 (257)
Q Consensus        29 ~~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~  108 (257)
                      ..|++|..+++.+.++..+++|++.+|+||+|+|++++.+|+.|++||..|+++.+++.|+++|.+++++.++++++||+
T Consensus         2 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~de~~y~e~l~~~~l~~~~~~~~VLd   81 (275)
T 1iy9_A            2 ELWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLV   81 (275)
T ss_dssp             CEEEEEEEETTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEE
T ss_pred             CccEEEecCCCcEEEEeeeeEEEEEECCCceEEEEEcCCCCEEEEECCEEeecccchhHHHHHHHHHHHhhCCCCCEEEE
Confidence            37999999999999999999999999999999999999999999999999999999999999999999888889999999


Q ss_pred             EeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCC
Q 025141          109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE  188 (257)
Q Consensus       109 IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~  188 (257)
                      ||||+|.++++++++++..+|++||+||++++.|+++++.....+.++|++++++|+++++....++||+|++|++++. 
T Consensus        82 iG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~-  160 (275)
T 1iy9_A           82 VGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV-  160 (275)
T ss_dssp             ESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCC-
T ss_pred             ECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCC-
Confidence            9999999999999986678999999999999999999864222346799999999999999877789999999998876 


Q ss_pred             CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEee
Q 025141          189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       189 ~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~  250 (257)
                       .+..+|++.+|++. ++++|+|||+++++.++|  +...+.++.+.++++++|+++.+|..
T Consensus       161 -~~~~~l~~~~~~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~~  218 (275)
T 1iy9_A          161 -GPAVNLFTKGFYAG-IAKALKEDGIFVAQTDNP--WFTPELITNVQRDVKEIFPITKLYTA  218 (275)
T ss_dssp             -SCCCCCSTTHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             -CcchhhhHHHHHHH-HHHhcCCCcEEEEEcCCc--cccHHHHHHHHHHHHHhCCCeEEEEE
Confidence             45568999999999 799999999999998776  56788899999999999999999875

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=100.00  E-value=2.9e-39  Score=285.99  Aligned_cols=222  Identities=33%  Similarity=0.605  Sum_probs=198.6

Q ss_pred             cCeEEee--eccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeE
Q 025141           29 SCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (257)
Q Consensus        29 ~~w~~~~--~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~V  106 (257)
                      +.||.|.  ..++.+.+++.+++|++.+|+||+|.|++++.+|+.|++||.+|+++++++.|++++.+++++.++++++|
T Consensus         3 ~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l~~~~l~~~~~~~~V   82 (283)
T 2i7c_A            3 KKWFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNV   82 (283)
T ss_dssp             CCEEEECCTTSTTCCEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEE
T ss_pred             ceeEEEcccCCCCceEEEecccEEEEEECCCccEEEEEcCCCCEEEEECCEeeecccchhhHHHHHHHHHHhcCCCCCeE
Confidence            5799998  66999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCC
Q 025141          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (257)
Q Consensus       107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~  186 (257)
                      |+||||+|.++++++++.+..+|++||+|+.+++.|+++++..+..+.++|++++++|+++++....++||+|++|++++
T Consensus        83 LdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~  162 (283)
T 2i7c_A           83 LVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDP  162 (283)
T ss_dssp             EEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCT
T ss_pred             EEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcCCCC
Confidence            99999999999999998767899999999999999999987432224578999999999999977678899999999887


Q ss_pred             CCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCccc
Q 025141          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       187 ~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~  255 (257)
                      .  .+...+++.+|++. ++++|+|||+++++..++  +...+.+..+.++++++|+++.+|....++|
T Consensus       163 ~--~~~~~l~~~~~l~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y  226 (283)
T 2i7c_A          163 I--GPAETLFNQNFYEK-IYNALKPNGYCVAQCESL--WIHVGTIKNMIGYAKKLFKKVEYANISIPTY  226 (283)
T ss_dssp             T--TGGGGGSSHHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHTTCSEEEEEEEECTTS
T ss_pred             C--CcchhhhHHHHHHH-HHHhcCCCcEEEEECCCc--ccCHHHHHHHHHHHHHHCCceEEEEEEcCCc
Confidence            6  55568899999999 799999999999998776  6677888999999999999999887744443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=100.00  E-value=2.1e-38  Score=283.28  Aligned_cols=224  Identities=31%  Similarity=0.627  Sum_probs=188.2

Q ss_pred             CCCCccccCeEEeeec--cccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhc
Q 025141           22 ALTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLH   99 (257)
Q Consensus        22 ~~~~~~~~~w~~~~~~--~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~   99 (257)
                      ..++...++||.|..+  ++...+++++++|++.+|+||+|+|++++.+|+.|++||.+|+++++++.|++++.+++++.
T Consensus        13 ~~~~~~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~L~ldg~~~~~~~de~~y~e~l~~~~l~~   92 (304)
T 2o07_A           13 SGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCS   92 (304)
T ss_dssp             -----CBTTEEEECCTTSTTEEEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTT
T ss_pred             CCCcccccceEEEeccCCCCceEEEEeccEEEEEECCCcEEEEEEcCCCceEEEECCEEEeecccchHHHHHHHHHHHhh
Confidence            3455667899999865  89999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ++++++||+||||+|.++++++++.+..+|++||+|+++++.|+++++.....+.++|++++++|+++++....++||+|
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence            88899999999999999999999866689999999999999999998642112346899999999999998777899999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEee
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~  250 (257)
                      ++|++++.  .|...+++.+|++. ++++|+|||+++++..++  |........+.++++++|+++..+..
T Consensus       173 i~d~~~~~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~f~~v~~~~~  238 (304)
T 2o07_A          173 ITDSSDPM--GPAESLFKESYYQL-MKTALKEDGVLCCQGECQ--WLHLDLIKEMRQFCQSLFPVVAYAYC  238 (304)
T ss_dssp             EEECC-------------CHHHHH-HHHHEEEEEEEEEEEECT--TTCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             EECCCCCC--CcchhhhHHHHHHH-HHhccCCCeEEEEecCCc--ccchHHHHHHHHHHHHhCCCceeEEE
Confidence            99998765  44456888999999 799999999999998666  66777888999999999999988754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=100.00  E-value=2.4e-38  Score=281.79  Aligned_cols=220  Identities=34%  Similarity=0.632  Sum_probs=190.7

Q ss_pred             cccCeEEeeec-cccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCe
Q 025141           27 RKSCWYEEEIE-ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT  105 (257)
Q Consensus        27 ~~~~w~~~~~~-~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~  105 (257)
                      ..+.||.|..+ ++.+.++..+++|++.+|+||+|.|++++.+|+.|++||.+|++.++++.|++++.+++++.++++++
T Consensus        14 ~~~~w~~e~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~~   93 (296)
T 1inl_A           14 RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKK   93 (296)
T ss_dssp             CSSEEEEEECTTSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCCceEEEecCCCCceEEeecccEEEEEECCCccEEEEEcCCCcEEEEECCEEeecccchhHHHHHHhHHHHhcCCCCCE
Confidence            56789999998 99999999999999999999999999999999999999999999999999999999999888888999


Q ss_pred             EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025141          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       106 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~  185 (257)
                      ||+||||+|.++++++++.+..+|++||+|+.+++.|+++++.....+.+++++++++|+++++....++||+|++|+++
T Consensus        94 VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~  173 (296)
T 1inl_A           94 VLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTD  173 (296)
T ss_dssp             EEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC--
T ss_pred             EEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCC
Confidence            99999999999999999866689999999999999999998531112346899999999999987767889999999987


Q ss_pred             CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEee
Q 025141          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~  250 (257)
                      ++. ++...+++.+|++. ++++|+|||+++++.++|  +...+.+..+.++++++|+++.+|..
T Consensus       174 ~~~-~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~~  234 (296)
T 1inl_A          174 PTA-GQGGHLFTEEFYQA-CYDALKEDGVFSAETEDP--FYDIGWFKLAYRRISKVFPITRVYLG  234 (296)
T ss_dssp             ---------CCSHHHHHH-HHHHEEEEEEEEEECCCT--TTTHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             ccc-CchhhhhHHHHHHH-HHHhcCCCcEEEEEccCc--ccCHHHHHHHHHHHHHHCCceEEEEe
Confidence            732 45567899999999 799999999999998776  56778899999999999999998874

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=100.00  E-value=5.9e-38  Score=277.25  Aligned_cols=214  Identities=34%  Similarity=0.651  Sum_probs=188.8

Q ss_pred             cCeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEE
Q 025141           29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI  108 (257)
Q Consensus        29 ~~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~  108 (257)
                      +.||+|..+++.+.+++++++|++.+|+||+|.|++++.+|+.|++||..|+++++++.|++++.+++++.++++++||+
T Consensus         2 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VLd   81 (281)
T 1mjf_A            2 ERAFIEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLV   81 (281)
T ss_dssp             --CEEEEEGGGEEEEECEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEE
T ss_pred             CccEEEecCCCceEEEeeccEEEEeeCCCccEEEEECCCccEEEEECCEeeeccccchHHHHHHHHHHHhhCCCCCeEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999988888888999999


Q ss_pred             EeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCC-------CCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF-------SDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       109 IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~-------~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ||||+|.++++++++ +..+|++||+|+.+++.|++++.. ...+       .+++++++.+|+++++.. .++||+|++
T Consensus        82 iG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~-~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~  158 (281)
T 1mjf_A           82 IGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKI-DNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIA  158 (281)
T ss_dssp             EECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCT-TTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEE
T ss_pred             EcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhh-ccccccccccCCCCcEEEEECchHHHhcc-cCCeeEEEE
Confidence            999999999999998 668999999999999999999822 1122       468999999999999877 788999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEee
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~  250 (257)
                      |++++.  .+...+++.+|++. ++++|+|||+++++.+++  +...+.++.+.++++++|+++.+|..
T Consensus       159 d~~~~~--~~~~~l~~~~~l~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~f~~v~~~~~  222 (281)
T 1mjf_A          159 DSTDPV--GPAKVLFSEEFYRY-VYDALNNPGIYVTQAGSV--YLFTDELISAYKEMKKVFDRVYYYSF  222 (281)
T ss_dssp             ECCCCC-------TTSHHHHHH-HHHHEEEEEEEEEEEEET--TTSHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             CCCCCC--CcchhhhHHHHHHH-HHHhcCCCcEEEEEcCCc--ccCHHHHHHHHHHHHHHCCceEEEEE
Confidence            998775  44467889999999 799999999999998766  56778899999999999999998876

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=100.00  E-value=3.9e-38  Score=282.62  Aligned_cols=221  Identities=44%  Similarity=0.732  Sum_probs=194.0

Q ss_pred             cccCeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeE
Q 025141           27 RKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (257)
Q Consensus        27 ~~~~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~V  106 (257)
                      ....||.|..+++.+.+++++++|++.+|+||+|.|++++.+|++|++||.+|+++.+++.|++++.+++++.++++++|
T Consensus         2 ~~~~w~~e~~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l~~~~l~~~~~~~~V   81 (314)
T 1uir_A            2 DYGMYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRV   81 (314)
T ss_dssp             CSSCEEEEESSSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEE
T ss_pred             CCCceEEEEcCCCcEEEEecceEEEEEECCCCCEEEEEcCCCcEEEEECCEEeeeecchhHHHHHHHHHHHhcCCCCCeE
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025141          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~  185 (257)
                      |+||||+|.++++++++.+..+|++||+|+.+++.|+++++. +...+.+++++++.+|+++++....++||+|++|+++
T Consensus        82 LdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~  161 (314)
T 1uir_A           82 LIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTD  161 (314)
T ss_dssp             EEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCC
T ss_pred             EEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEECCCC
Confidence            999999999999999986668999999999999999999863 2211346899999999999987777899999999987


Q ss_pred             CC-CCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCC-CChHHHHHHHHHHhhhCCceEEEee
Q 025141          186 PI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF-SHTEVFSCIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       186 ~~-~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~-~~~~~~~~~~~~l~~~F~~v~~~~~  250 (257)
                      +. ...|...|++.+|++. ++++|+|||+++++.+++  + .+.+.++.+.++++++|+++.++..
T Consensus       162 ~~~~~~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~~l~~~F~~v~~~~~  225 (314)
T 1uir_A          162 PVGEDNPARLLYTVEFYRL-VKAHLNPGGVMGMQTGMI--LLTHHRVHPVVHRTVREAFRYVRSYKN  225 (314)
T ss_dssp             CBSTTCGGGGGSSHHHHHH-HHHTEEEEEEEEEEEEEE--CC---CHHHHHHHHHHTTCSEEEEEEE
T ss_pred             cccccCcchhccHHHHHHH-HHHhcCCCcEEEEEccCc--cccCHHHHHHHHHHHHHHCCceEEEEE
Confidence            65 1134467889999999 799999999999997665  3 4456788999999999999998864

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=100.00  E-value=5.5e-38  Score=281.74  Aligned_cols=211  Identities=35%  Similarity=0.668  Sum_probs=179.6

Q ss_pred             eccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchH
Q 025141           36 IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS  115 (257)
Q Consensus        36 ~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~  115 (257)
                      ..++...++.++++|++.+|+||+|.|++++.+|+.|++||.+|+++++++.|++++.+++++.++++++||+||||+|.
T Consensus        42 ~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VLdIG~G~G~  121 (314)
T 2b2c_A           42 AWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGG  121 (314)
T ss_dssp             CCTTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSH
T ss_pred             cCCCceEEeecccEEEEEECCCCCEEEEEcCCCCEEEEECCEeecCCcchhHHHHHHHHHHHhhCCCCCEEEEEcCCcCH
Confidence            56889999999999999999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCC
Q 025141          116 TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKL  195 (257)
Q Consensus       116 ~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L  195 (257)
                      ++++++++.+..+|++||+|+.+++.|+++++.....+.++|++++++|+++++....++||+|++|++++.  .|...+
T Consensus       122 ~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~--~~~~~l  199 (314)
T 2b2c_A          122 ILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESL  199 (314)
T ss_dssp             HHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-----------
T ss_pred             HHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCC--Ccchhh
Confidence            999999986678999999999999999999864311234689999999999999776788999999998775  444578


Q ss_pred             chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeec
Q 025141          196 YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFS  251 (257)
Q Consensus       196 ~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~  251 (257)
                      ++.+|++. ++++|+|||+++++.+++  +.....+..+.++++++|+++.++...
T Consensus       200 ~t~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~vF~~v~~~~~~  252 (314)
T 2b2c_A          200 FGQSYYEL-LRDALKEDGILSSQGESV--WLHLPLIAHLVAFNRKIFPAVTYAQSI  252 (314)
T ss_dssp             ----HHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSEEEEEEEE
T ss_pred             hHHHHHHH-HHhhcCCCeEEEEECCCc--ccCHHHHHHHHHHHHHHCCcceEEEEE
Confidence            89999999 799999999999998776  667788999999999999999988773

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=100.00  E-value=5.8e-37  Score=275.89  Aligned_cols=219  Identities=33%  Similarity=0.598  Sum_probs=195.4

Q ss_pred             cccCeEEeeec--cccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCC
Q 025141           27 RKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPK  104 (257)
Q Consensus        27 ~~~~w~~~~~~--~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~  104 (257)
                      ..+.|+.|..+  ++.+.++..+++|++++|+||+|.|++++.+|+.|++||.+|++.++++.|+|++.+++++.+++++
T Consensus        39 ~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~  118 (321)
T 2pt6_A           39 FSKKWFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPK  118 (321)
T ss_dssp             --CCEEEECCTTSTTCCEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCC
T ss_pred             ccceEEEEeccCCCCceEEEecccEEEEEECCCceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhcCCCCC
Confidence            35789999988  8999999999999999999999999999989999999999999999999999999999988888899


Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~  184 (257)
                      +||+||||+|.++++++++.+..+|++||+|+++++.|+++++.....+.+++++++.+|+++++....++||+|++|++
T Consensus       119 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~  198 (321)
T 2pt6_A          119 NVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSS  198 (321)
T ss_dssp             EEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECC
T ss_pred             EEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECCc
Confidence            99999999999999999986668999999999999999999864222234689999999999998766788999999998


Q ss_pred             CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEee
Q 025141          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~  250 (257)
                      ++.  .|...+++.+|++. ++++|+|||+++++..++  +.+.+.+.++.+++++.|+++.+|..
T Consensus       199 ~p~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~~  259 (321)
T 2pt6_A          199 DPI--GPAETLFNQNFYEK-IYNALKPNGYCVAQCESL--WIHVGTIKNMIGYAKKLFKKVEYANI  259 (321)
T ss_dssp             CSS--SGGGGGSSHHHHHH-HHHHEEEEEEEEEEECCT--TTCHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CCC--CcchhhhHHHHHHH-HHHhcCCCcEEEEEcCCc--ccCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            775  45567888999999 799999999999998766  56778899999999999999999875

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=100.00  E-value=1.9e-36  Score=270.46  Aligned_cols=224  Identities=33%  Similarity=0.599  Sum_probs=191.5

Q ss_pred             CCCccccCeEEeeec--cccceeeeeccEEEEeecCCCcEEEEEec---CCeeEEEEcCcccccCCCchhHHHHHHHHHh
Q 025141           23 LTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTK---PFGKALVIDGKLQSAEVDEFIYHESLVHPAL   97 (257)
Q Consensus        23 ~~~~~~~~w~~~~~~--~~~~~~~~~~~il~~~~s~~~~i~v~~~~---~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l   97 (257)
                      ..+.....||.|..+  ++...++..+++|++.+|+||+|.|++++   .+|+.|++||.+|+++.+++.|++++.++++
T Consensus        11 ~~~~~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~p~g~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l   90 (304)
T 3bwc_A           11 GSELISGGWFREENDQWPGQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTDYDEFVYHEVLGHTSL   90 (304)
T ss_dssp             -CCCCTTSEEEECCSSSCSEEEEEEEEEEEEEEECSSSEEEEEEECTTSSCCEEEEETTEEEEETTTHHHHHHHHHHHHH
T ss_pred             CCccccCceEEEeccCCCCceEEEecccEEEEeECCCCCEEEEEecCCCccceEEEECCeeeeecccchHHHHHHhhhhh
Confidence            345566789999988  89999999999999999999999999998   7899999999999999999999999999998


Q ss_pred             hcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCce
Q 025141           98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESY  176 (257)
Q Consensus        98 ~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~f  176 (257)
                      +.++++++||+||||+|.++++++++.+..+|++||+|+.+++.|+++++.....+.++|++++.+|+++++.. ..++|
T Consensus        91 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~f  170 (304)
T 3bwc_A           91 CSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTY  170 (304)
T ss_dssp             TTSSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCE
T ss_pred             hcCCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCce
Confidence            88888999999999999999999998666899999999999999999985311113578999999999999876 56889


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEeec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALFS  251 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~  251 (257)
                      |+|++|.+++.  .|...|++.+|++. ++++|+|||+++++..++  +......+.+.++|+++ |+.+.++...
T Consensus       171 DvIi~d~~~~~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~GF~~v~~~~~~  241 (304)
T 3bwc_A          171 DVVIIDTTDPA--GPASKLFGEAFYKD-VLRILKPDGICCNQGESI--WLDLELIEKMSRFIRETGFASVQYALMH  241 (304)
T ss_dssp             EEEEEECC-----------CCHHHHHH-HHHHEEEEEEEEEEECCT--TTCHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             eEEEECCCCcc--ccchhhhHHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhCCCCcEEEEEee
Confidence            99999998765  45568899999999 799999999999998766  56677889999999999 9999988763

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=100.00  E-value=6.7e-37  Score=268.20  Aligned_cols=200  Identities=16%  Similarity=0.221  Sum_probs=179.4

Q ss_pred             CeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEE
Q 025141           30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIM  109 (257)
Q Consensus        30 ~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~I  109 (257)
                      .|++|..+++.+.+++++++|++.+|+||+|.|++++.+|++|++||. |+++.+++.|++++.+++++.++++++||+|
T Consensus         1 ~w~~e~~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~-q~~~~d~~~y~e~l~~~~~~~~~~~~~VL~i   79 (262)
T 2cmg_A            1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQ-LLFKNFLHIESELLAHMGGCTKKELKEVLIV   79 (262)
T ss_dssp             CEEEEEEETTEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTE-EEEGGGTHHHHHHHHHHHHTTSSCCCEEEEE
T ss_pred             CcEEEEcCCCceEEEEEeeEEEeeECCCceEEEEECCCccEEEEEcCc-ccccchHHHHHHHHHHHhhhcCCCCCEEEEE
Confidence            599999999999999999999999999999999999999999999999 9999999999999999999888899999999


Q ss_pred             eccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCC
Q 025141          110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG  189 (257)
Q Consensus       110 G~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~  189 (257)
                      |||+|.++++++++ + .+|++||+|+++++.|+++++.....+.++|++++++|+++++    ++||+|++|+++|.  
T Consensus        80 G~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii~d~~dp~--  151 (262)
T 2cmg_A           80 DGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIFCLQEPDI--  151 (262)
T ss_dssp             SSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEEESSCCCH--
T ss_pred             eCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEEECCCChH--
Confidence            99999999999998 6 8999999999999999999863211235789999999999987    78999999975431  


Q ss_pred             CcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEee
Q 025141          190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       190 ~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~  250 (257)
                               .|++. ++++|+|||+++++.++|  +.....+.++.++++++|+++.++..
T Consensus       152 ---------~~~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~~~~~~~  200 (262)
T 2cmg_A          152 ---------HRIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGGVFSVAMPFVA  200 (262)
T ss_dssp             ---------HHHHH-HHTTEEEEEEEEEEEECT--TTCHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             ---------HHHHH-HHHhcCCCcEEEEEcCCc--ccCHHHHHHHHHHHHHhCCceEEEEE
Confidence                     38999 799999999999998776  45667889999999999999998876

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=100.00  E-value=1.3e-35  Score=268.51  Aligned_cols=220  Identities=35%  Similarity=0.632  Sum_probs=191.1

Q ss_pred             ccccCeEEeee--ccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCC
Q 025141           26 YRKSCWYEEEI--EENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNP  103 (257)
Q Consensus        26 ~~~~~w~~~~~--~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~  103 (257)
                      ...++||.|..  .++.+.+++++++|++.+|+||+|.|+++..+|+.|++||.+|+++++++.|++++++++++.++++
T Consensus        42 ~~~~~w~~e~~~~~~~~~~~~~v~~vl~~~~s~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~L~~l~l~~~~~~  121 (334)
T 1xj5_A           42 TVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNP  121 (334)
T ss_dssp             CCCSSEEEECCTTSTTEEEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCC
T ss_pred             ccccceEEEeccCCCCceEEEEeeeEEEEeecCCeEEEEEEcCCCCeEEEECCEeecCcCcchHHHHHHHHHHHhhCCCC
Confidence            44578999885  4899999999999999999999999999999999999999999999999999999999998888889


Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEc
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGD  182 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D  182 (257)
                      ++||+||||+|.++++++++.+..+|++||+|+.+++.|+++++.....+.+++++++.+|+++++... .++||+|++|
T Consensus       122 ~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d  201 (334)
T 1xj5_A          122 KKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVD  201 (334)
T ss_dssp             CEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEEC
T ss_pred             CEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEEC
Confidence            999999999999999999986678999999999999999999864211234689999999999998753 4789999999


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCc-eEEEee
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC-GCCALF  250 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~-v~~~~~  250 (257)
                      ++++.  .+...+++.+|++. ++++|+|||+++++.+++  |........+.+++++.|+. +..+..
T Consensus       202 ~~~p~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~~~~~~~~  265 (334)
T 1xj5_A          202 SSDPI--GPAKELFEKPFFQS-VARALRPGGVVCTQAESL--WLHMDIIEDIVSNCREIFKGSVNYAWT  265 (334)
T ss_dssp             CCCTT--SGGGGGGSHHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSSCEEEEEE
T ss_pred             CCCcc--CcchhhhHHHHHHH-HHHhcCCCcEEEEecCCc--cccHHHHHHHHHHHHHhCccccceEEE
Confidence            98766  34346788999999 799999999999997766  67777788899999999995 444333

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.98  E-value=8.3e-32  Score=241.13  Aligned_cols=186  Identities=24%  Similarity=0.293  Sum_probs=158.1

Q ss_pred             cCCCcEEEEEecC--CeeEEEEcCcccccC------CCchhHHHHHHHHHhh---cCCCCC--eEEEEeccchHHHHHHH
Q 025141           55 TRYQDIALLDTKP--FGKALVIDGKLQSAE------VDEFIYHESLVHPALL---HHPNPK--TIFIMGGGEGSTAREIL  121 (257)
Q Consensus        55 s~~~~i~v~~~~~--~g~~L~ldG~~~~~~------~~~~~y~e~l~~~~l~---~~~~~~--~VL~IG~G~G~~~~~l~  121 (257)
                      ..|...++.....  +|++|++||..|+++      .+++.|+++|+|.+++   .+++++  +||+||||+|.++++++
T Consensus        29 ~~~~~~~~~~d~~~~~g~~L~lDG~~Qs~~~l~dP~~le~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la  108 (317)
T 3gjy_A           29 GEYSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFA  108 (317)
T ss_dssp             CSSSEEEEEECSSSTTEEEEEETTEEEEEEETTCTTCCCSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHH
T ss_pred             ceeeeEEEEecCCCCceEEEEECCEeEEEEECCCCcchhhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHH
Confidence            3355578887664  799999999999874      4689999999999887   477766  99999999999999999


Q ss_pred             hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCchHHH
Q 025141          122 RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSF  200 (257)
Q Consensus       122 ~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~p~~~L~t~ef  200 (257)
                      ++.+..+|++||||++++++||++|+.+    .++|++++++|++++++.. .++||+|++|++++.  .+..+|++.+|
T Consensus       109 ~~~p~~~v~~VEidp~vi~~Ar~~~~~~----~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~--~~~~~L~t~ef  182 (317)
T 3gjy_A          109 DVYPQSRNTVVELDAELARLSREWFDIP----RAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGA--ITPQNFTTVEF  182 (317)
T ss_dssp             HHSTTCEEEEEESCHHHHHHHHHHSCCC----CTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTS--CCCGGGSBHHH
T ss_pred             HHCCCcEEEEEECCHHHHHHHHHhcccc----CCCceEEEECcHHHHHhhccCCCCCEEEECCCCcc--ccchhhhHHHH
Confidence            9433459999999999999999999765    4789999999999999764 578999999998875  33468999999


Q ss_pred             HHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEee
Q 025141          201 YEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       201 ~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~  250 (257)
                      |+. ++++|+|||++++|...+   .....+++++++|+++|+++.+|..
T Consensus       183 l~~-~~r~LkpgGvlv~~~~~~---~~~~~~~~~~~tL~~vF~~v~~~~~  228 (317)
T 3gjy_A          183 FEH-CHRGLAPGGLYVANCGDH---SDLRGAKSELAGMMEVFEHVAVIAD  228 (317)
T ss_dssp             HHH-HHHHEEEEEEEEEEEEEC---TTCHHHHHHHHHHHHHCSEEEEEEC
T ss_pred             HHH-HHHhcCCCcEEEEEecCC---cchHHHHHHHHHHHHHCCceEEEEe
Confidence            999 799999999999998643   2346788999999999999999875

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.60  E-value=1.9e-14  Score=118.39  Aligned_cols=109  Identities=10%  Similarity=0.093  Sum_probs=87.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvI  179 (257)
                      .++++|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...+    .++++++.+|+.++.... .++||+|
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD~i  117 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALG----LSGATLRRGAVAAVVAAGTTSPVDLV  117 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHT----CSCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcC----CCceEEEEccHHHHHhhccCCCccEE
Confidence            46789999999999999988875 45689999999999999999987553    268999999999987643 5789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcC--cCCCCcEEEEecC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKP--RLNPEGIFVTQAG  220 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~--~L~pgGil~~~~~  220 (257)
                      ++|++-..  ..   -...++++. +.+  .|+|||++++...
T Consensus       118 ~~~~p~~~--~~---~~~~~~l~~-~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          118 LADPPYNV--DS---ADVDAILAA-LGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             EECCCTTS--CH---HHHHHHHHH-HHHSSSCCTTCEEEEEEE
T ss_pred             EECCCCCc--ch---hhHHHHHHH-HHhcCccCCCeEEEEEec
Confidence            99976321  10   123467777 676  9999999998763

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.59  E-value=3.7e-15  Score=127.63  Aligned_cols=121  Identities=10%  Similarity=0.078  Sum_probs=92.2

Q ss_pred             hhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch
Q 025141           86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA  165 (257)
Q Consensus        86 ~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da  165 (257)
                      ..|.+.+...   ..+++.+||+||||+|..+..++++.+ .++++||++|.+++.|++++...     ..+++++.+|+
T Consensus        47 ~~~m~~~a~~---~~~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~-----~~~~~~~~~~a  117 (236)
T 3orh_A           47 TPYMHALAAA---ASSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ-----THKVIPLKGLW  117 (236)
T ss_dssp             HHHHHHHHHH---HTTTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC-----SSEEEEEESCH
T ss_pred             HHHHHHHHHh---hccCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC-----CCceEEEeehH
Confidence            3455544422   236778999999999999999998754 68999999999999999987643     36889999999


Q ss_pred             HHHHhc-CCCceeEEEEcCCCCCCCCcccCCc-hHHHHHHHHcCcCCCCcEEEEe
Q 025141          166 RAELES-RKESYDVIIGDLADPIEGGPCYKLY-TKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       166 ~~~l~~-~~~~fDvIi~D~~~~~~~~p~~~L~-t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .+.+.. ..++||.|+.|.....  ....++. ...++++ ++++|||||+|++.
T Consensus       118 ~~~~~~~~~~~FD~i~~D~~~~~--~~~~~~~~~~~~~~e-~~rvLkPGG~l~f~  169 (236)
T 3orh_A          118 EDVAPTLPDGHFDGILYDTYPLS--EETWHTHQFNFIKNH-AFRLLKPGGVLTYC  169 (236)
T ss_dssp             HHHGGGSCTTCEEEEEECCCCCB--GGGTTTHHHHHHHHT-HHHHEEEEEEEEEC
T ss_pred             HhhcccccccCCceEEEeeeecc--cchhhhcchhhhhhh-hhheeCCCCEEEEE
Confidence            888755 4578999999986432  1112232 3567888 79999999999863

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.55  E-value=2.2e-14  Score=121.88  Aligned_cols=103  Identities=16%  Similarity=0.223  Sum_probs=85.5

Q ss_pred             CeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEE
Q 025141          104 KTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIG  181 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~  181 (257)
                      .+||+||||+|..+..+++. ++..+|++||+++++++.|++++...+  +.+++++++.+|+.+++... .++||+|++
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--YSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            39999999999999999885 445799999999999999999987543  22268999999999998765 688999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |....         ...++++. +.+.|+|||++++.
T Consensus       136 d~~~~---------~~~~~l~~-~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          136 QVSPM---------DLKALVDA-AWPLLRRGGALVLA  162 (221)
T ss_dssp             CCCTT---------THHHHHHH-HHHHEEEEEEEEET
T ss_pred             cCcHH---------HHHHHHHH-HHHHcCCCcEEEEe
Confidence            96421         12468898 79999999999984

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.54  E-value=3.2e-14  Score=121.20  Aligned_cols=105  Identities=22%  Similarity=0.387  Sum_probs=87.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvI  179 (257)
                      .++++||+||||+|..+..+++..+..+|++||+++.+++.|++++...+   ..++++++.+|+.+.+. ...++||+|
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~fD~V  146 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH---FENQVRIIEGNALEQFENVNDKVYDMI  146 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT---CTTTEEEEESCGGGCHHHHTTSCEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECCHHHHHHhhccCCccEE
Confidence            36789999999999999999986446799999999999999999987542   23689999999999876 556889999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++|....         ...++++. +.+.|+|||++++.
T Consensus       147 ~~~~~~~---------~~~~~l~~-~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          147 FIDAAKA---------QSKKFFEI-YTPLLKHQGLVITD  175 (232)
T ss_dssp             EEETTSS---------SHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             EEcCcHH---------HHHHHHHH-HHHhcCCCeEEEEe
Confidence            9996421         13578898 79999999999984

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.53  E-value=1.1e-13  Score=117.35  Aligned_cols=129  Identities=15%  Similarity=0.206  Sum_probs=100.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDvI  179 (257)
                      +...|||||||+|.++..+++..+..+|++||+++.+++.|+++....+    .++++++.+|+.+.+..  ..+.||.|
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~----l~nv~~~~~Da~~~l~~~~~~~~~d~v  109 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG----LSNLRVMCHDAVEVLHKMIPDNSLRMV  109 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT----CSSEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHcCCCChheE
Confidence            5679999999999999999986555799999999999999999876442    35799999999998763  46789999


Q ss_pred             EEcCCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       180 i~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      ++..++|+....  ...+...++++. ++++|+|||++++.+..      ......+...+.+.
T Consensus       110 ~~~~~~p~~~~~~~~rr~~~~~~l~~-~~r~LkpGG~l~i~td~------~~~~~~~~~~~~~~  166 (218)
T 3dxy_A          110 QLFFPDPWHKARHNKRRIVQVPFAEL-VKSKLQLGGVFHMATDW------EPYAEHMLEVMSSI  166 (218)
T ss_dssp             EEESCCCCCSGGGGGGSSCSHHHHHH-HHHHEEEEEEEEEEESC------HHHHHHHHHHHHTS
T ss_pred             EEeCCCCccchhhhhhhhhhHHHHHH-HHHHcCCCcEEEEEeCC------HHHHHHHHHHHHhC
Confidence            998777653211  123556789999 79999999999987532      34455666666654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.53  E-value=7.4e-14  Score=120.26  Aligned_cols=106  Identities=18%  Similarity=0.248  Sum_probs=87.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC--Ccee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--ESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~--~~fD  177 (257)
                      .++++||+||||+|..+..+++..+ ..+|++||+++.+++.|++++...+   ..++++++.+|+.+++....  ++||
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~l~~~~~~~~fD  138 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG---VDQRVTLREGPALQSLESLGECPAFD  138 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHTCCSCCCCS
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHhcCCCCCeE
Confidence            3578999999999999999998633 5799999999999999999987543   24689999999999887654  4899


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|++|...+         ....+++. +.+.|+|||++++..
T Consensus       139 ~V~~d~~~~---------~~~~~l~~-~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          139 LIFIDADKP---------NNPHYLRW-ALRYSRPGTLIIGDN  170 (248)
T ss_dssp             EEEECSCGG---------GHHHHHHH-HHHTCCTTCEEEEEC
T ss_pred             EEEECCchH---------HHHHHHHH-HHHhcCCCeEEEEeC
Confidence            999986421         13568888 799999999999753

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.52  E-value=1.3e-13  Score=116.18  Aligned_cols=108  Identities=12%  Similarity=0.177  Sum_probs=85.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-----C
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-----E  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-----~  174 (257)
                      .++++||+||||+|..+..+++. ++..+|++||+++.+++.|++++...+   ..++++++.+|+.+++....     +
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~~  133 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG---LQDKVTILNGASQDLIPQLKKKYDVD  133 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHGGGTTTTSCCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC---CCCceEEEECCHHHHHHHHHHhcCCC
Confidence            35789999999999999999985 335799999999999999999987543   24589999999999887644     6


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +||+|++|.....      ..-..++++. + +.|+|||++++..
T Consensus       134 ~fD~V~~d~~~~~------~~~~~~~~~~-~-~~LkpgG~lv~~~  170 (221)
T 3u81_A          134 TLDMVFLDHWKDR------YLPDTLLLEK-C-GLLRKGTVLLADN  170 (221)
T ss_dssp             CCSEEEECSCGGG------HHHHHHHHHH-T-TCCCTTCEEEESC
T ss_pred             ceEEEEEcCCccc------chHHHHHHHh-c-cccCCCeEEEEeC
Confidence            8999999964211      1122366776 5 8999999999864

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.51  E-value=6.6e-14  Score=120.78  Aligned_cols=105  Identities=17%  Similarity=0.151  Sum_probs=86.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC------C
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K  173 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~------~  173 (257)
                      .++++||+||||+|..+..+++. ++..+|+++|+++.+++.|++++...+   ..++++++.+|+.+++...      .
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~l~~~~~~~  154 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG---VDHKIDFREGPALPVLDEMIKDEKNH  154 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCeEEEECCHHHHHHHHHhccCCC
Confidence            46789999999999999999886 335799999999999999999987542   2468999999999887542      5


Q ss_pred             CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++||+|++|....         ....+++. +.+.|+|||++++.
T Consensus       155 ~~fD~V~~d~~~~---------~~~~~l~~-~~~~LkpGG~lv~d  189 (247)
T 1sui_A          155 GSYDFIFVDADKD---------NYLNYHKR-LIDLVKVGGVIGYD  189 (247)
T ss_dssp             TCBSEEEECSCST---------THHHHHHH-HHHHBCTTCCEEEE
T ss_pred             CCEEEEEEcCchH---------HHHHHHHH-HHHhCCCCeEEEEe
Confidence            7899999996421         13578888 79999999999874

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.51  E-value=8.4e-14  Score=116.31  Aligned_cols=104  Identities=21%  Similarity=0.301  Sum_probs=85.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++++||+||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+   ..++++++.+|+.+++....+ ||+|
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~-fD~v  130 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG---LIDRVELQVGDPLGIAAGQRD-IDIL  130 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS---GGGGEEEEESCHHHHHTTCCS-EEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC---CCceEEEEEecHHHHhccCCC-CCEE
Confidence            3578999999999999999998633 5799999999999999999986432   236899999999998766556 9999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++|...         .....+++. +.+.|+|||++++.
T Consensus       131 ~~~~~~---------~~~~~~l~~-~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          131 FMDCDV---------FNGADVLER-MNRCLAKNALLIAV  159 (210)
T ss_dssp             EEETTT---------SCHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             EEcCCh---------hhhHHHHHH-HHHhcCCCeEEEEE
Confidence            999532         123678898 79999999999984

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.51  E-value=5.6e-13  Score=108.46  Aligned_cols=132  Identities=17%  Similarity=0.219  Sum_probs=100.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++||++|||+|..+..+++.  ..+++++|+++.+++.+++++...+  ..+++++++.+|+.+.+.  .++||+|+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~D~v~  124 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNN--LDNYDIRVVHSDLYENVK--DRKYNKII  124 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTT--CTTSCEEEEECSTTTTCT--TSCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECchhcccc--cCCceEEE
Confidence            46689999999999999999987  4699999999999999999886542  122259999999887543  56899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEee
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~  250 (257)
                      ++++-..  ..   -....+++. +++.|+|||.+++....      ......+.+.+++.|..+..+..
T Consensus       125 ~~~~~~~--~~---~~~~~~l~~-~~~~L~~gG~l~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~  182 (194)
T 1dus_A          125 TNPPIRA--GK---EVLHRIIEE-GKELLKDNGEIWVVIQT------KQGAKSLAKYMKDVFGNVETVTI  182 (194)
T ss_dssp             ECCCSTT--CH---HHHHHHHHH-HHHHEEEEEEEEEEEES------THHHHHHHHHHHHHHSCCEEEEE
T ss_pred             ECCCccc--ch---hHHHHHHHH-HHHHcCCCCEEEEEECC------CCChHHHHHHHHHHhcceEEEec
Confidence            9865321  11   123578888 79999999999987532      23345677888888888877655

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.51  E-value=9.3e-14  Score=116.86  Aligned_cols=105  Identities=17%  Similarity=0.248  Sum_probs=85.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC----CCc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----KES  175 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~----~~~  175 (257)
                      .++++||+||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+   ..++++++.+|+.+.+...    .++
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~  133 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN---LNDRVEVRTGLALDSLQQIENEKYEP  133 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTTCCC
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence            3678999999999999999998643 5799999999999999999987543   2468999999999876542    267


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ||+|++|...+         ....+++. +.+.|+|||++++.
T Consensus       134 fD~v~~d~~~~---------~~~~~l~~-~~~~L~pgG~lv~~  166 (223)
T 3duw_A          134 FDFIFIDADKQ---------NNPAYFEW-ALKLSRPGTVIIGD  166 (223)
T ss_dssp             CSEEEECSCGG---------GHHHHHHH-HHHTCCTTCEEEEE
T ss_pred             cCEEEEcCCcH---------HHHHHHHH-HHHhcCCCcEEEEe
Confidence            99999996521         13578888 79999999999985

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.50  E-value=7.2e-14  Score=121.28  Aligned_cols=138  Identities=14%  Similarity=0.146  Sum_probs=98.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh---ccCCCCCCCeEEEEcchHHHHh------c
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV---NKEAFSDPRLELVINDARAELE------S  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~---~~~~~~~~rv~i~~~Da~~~l~------~  171 (257)
                      .++.+|||||||+|.++..+++..+..+|++||+++.+++.|++++..   ++   ...+++++.+|+.++..      .
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~---l~~~v~~~~~D~~~~~~~~~~~~~  111 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA---FSARIEVLEADVTLRAKARVEAGL  111 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT---TGGGEEEEECCTTCCHHHHHHTTC
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC---CcceEEEEeCCHHHHhhhhhhhcc
Confidence            456799999999999999999875557999999999999999999875   42   23479999999988753      1


Q ss_pred             CCCceeEEEEcCCCCCC---CCc---------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025141          172 RKESYDVIIGDLADPIE---GGP---------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (257)
Q Consensus       172 ~~~~fDvIi~D~~~~~~---~~p---------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~  239 (257)
                      ..++||+|+++++-...   ..+         .......++++. +.+.|+|||.+++...       ...+.++.+.++
T Consensus       112 ~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~-------~~~~~~~~~~l~  183 (260)
T 2ozv_A          112 PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRT-ASAIMVSGGQLSLISR-------PQSVAEIIAACG  183 (260)
T ss_dssp             CTTCEEEEEECCCC---------------------CCHHHHHHH-HHHHEEEEEEEEEEEC-------GGGHHHHHHHHT
T ss_pred             CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHH-HHHHcCCCCEEEEEEc-------HHHHHHHHHHHH
Confidence            24789999999752110   000         001124578888 7999999999987542       223456777777


Q ss_pred             hhCCceEEEe
Q 025141          240 QVFKCGCCAL  249 (257)
Q Consensus       240 ~~F~~v~~~~  249 (257)
                      +.|..+....
T Consensus       184 ~~~~~~~i~~  193 (260)
T 2ozv_A          184 SRFGGLEITL  193 (260)
T ss_dssp             TTEEEEEEEE
T ss_pred             hcCCceEEEE
Confidence            7665554433

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.50  E-value=4.4e-14  Score=120.98  Aligned_cols=105  Identities=19%  Similarity=0.196  Sum_probs=86.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC------C
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K  173 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~------~  173 (257)
                      .++++||+||||+|..+..+++. ++..+|+++|+++.+++.|++++...+   ..++++++.+|+.+++...      .
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~l~~~~~~~  145 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG---VEHKINFIESDAMLALDNLLQGQESE  145 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHSTTCT
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhccCCC
Confidence            46789999999999999999986 435799999999999999999987542   2468999999999987643      4


Q ss_pred             CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++||+|++|...+         ...++++. +.+.|+|||++++.
T Consensus       146 ~~fD~I~~d~~~~---------~~~~~l~~-~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          146 GSYDFGFVDADKP---------NYIKYHER-LMKLVKVGGIVAYD  180 (237)
T ss_dssp             TCEEEEEECSCGG---------GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CCcCEEEECCchH---------HHHHHHHH-HHHhcCCCeEEEEe
Confidence            7899999995321         13678898 79999999999985

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.50  E-value=4.1e-13  Score=112.55  Aligned_cols=135  Identities=16%  Similarity=0.200  Sum_probs=100.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvI  179 (257)
                      .+..+|||||||+|.++..+++..+..++++||+++.+++.|++++...+    -++++++.+|+.++.. -..++||+|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~D~i  115 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG----VPNIKLLWVDGSDLTDYFEDGEIDRL  115 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC----CSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC----CCCEEEEeCCHHHHHhhcCCCCCCEE
Confidence            45679999999999999999887555799999999999999999886542    2689999999987432 234689999


Q ss_pred             EEcCCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceE
Q 025141          180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGC  246 (257)
Q Consensus       180 i~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~  246 (257)
                      +++.++++....  ...+...++++. ++++|+|||++++....      ......+.+.+++. |..+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~------~~~~~~~~~~~~~~g~~~~~  178 (214)
T 1yzh_A          116 YLNFSDPWPKKRHEKRRLTYKTFLDT-FKRILPENGEIHFKTDN------RGLFEYSLVSFSQYGMKLNG  178 (214)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHH-HHHHSCTTCEEEEEESC------HHHHHHHHHHHHHHTCEEEE
T ss_pred             EEECCCCccccchhhhccCCHHHHHH-HHHHcCCCcEEEEEeCC------HHHHHHHHHHHHHCCCeeee
Confidence            999877652110  113445789999 79999999999987532      33445666666654 44333

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.49  E-value=6.8e-13  Score=107.08  Aligned_cols=122  Identities=24%  Similarity=0.207  Sum_probs=92.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++...+   ...++ ++.+|+.+.+....++||+|+
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~-~~~~d~~~~~~~~~~~~D~i~   99 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG---VSDRI-AVQQGAPRAFDDVPDNPDVIF   99 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT---CTTSE-EEECCTTGGGGGCCSCCSEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC---CCCCE-EEecchHhhhhccCCCCCEEE
Confidence            45679999999999999999987556799999999999999999886442   23478 888998777765557899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~  243 (257)
                      ++...+.          ..+++. +.+.|+|||.+++....      ......+.+.+++...
T Consensus       100 ~~~~~~~----------~~~l~~-~~~~L~~gG~l~~~~~~------~~~~~~~~~~~~~~~~  145 (178)
T 3hm2_A          100 IGGGLTA----------PGVFAA-AWKRLPVGGRLVANAVT------VESEQMLWALRKQFGG  145 (178)
T ss_dssp             ECC-TTC----------TTHHHH-HHHTCCTTCEEEEEECS------HHHHHHHHHHHHHHCC
T ss_pred             ECCcccH----------HHHHHH-HHHhcCCCCEEEEEeec------cccHHHHHHHHHHcCC
Confidence            8754321          467888 79999999999987532      3334455555665543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.49  E-value=7.6e-13  Score=109.87  Aligned_cols=120  Identities=16%  Similarity=0.161  Sum_probs=94.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|..+..+++..+..+|+++|+++.+++.|++++...+    .++++++.+|+.+.+... ++||+|+
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~-~~~D~i~  113 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV----ARNVTLVEAFAPEGLDDL-PDPDRVF  113 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT----CTTEEEEECCTTTTCTTS-CCCSEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeCChhhhhhcC-CCCCEEE
Confidence            45689999999999999999987656799999999999999999987542    268999999987765432 6799999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      ++...+         ...++++. +.+.|+|||++++...      .......+.+.+++.
T Consensus       114 ~~~~~~---------~~~~~l~~-~~~~LkpgG~l~~~~~------~~~~~~~~~~~l~~~  158 (204)
T 3e05_A          114 IGGSGG---------MLEEIIDA-VDRRLKSEGVIVLNAV------TLDTLTKAVEFLEDH  158 (204)
T ss_dssp             ESCCTT---------CHHHHHHH-HHHHCCTTCEEEEEEC------BHHHHHHHHHHHHHT
T ss_pred             ECCCCc---------CHHHHHHH-HHHhcCCCeEEEEEec------ccccHHHHHHHHHHC
Confidence            986532         23578888 7999999999998642      234455666777665

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.49  E-value=1e-13  Score=112.37  Aligned_cols=110  Identities=15%  Similarity=0.214  Sum_probs=87.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||+|||+|..+..+++. +..+|+++|+++.+++.|++++...+   ..++++++.+|+.+++....++||+|+
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~fD~i~  105 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTK---AENRFTLLKMEAERAIDCLTGRFDLVF  105 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTT---CGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECcHHHhHHhhcCCCCEEE
Confidence            46789999999999999999986 45699999999999999999886542   235899999999998766567799999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHc--CcCCCCcEEEEecCCC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAGPA  222 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGil~~~~~~~  222 (257)
                      +|++-.       .....++++. +.  +.|+|||++++.....
T Consensus       106 ~~~~~~-------~~~~~~~~~~-l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          106 LDPPYA-------KETIVATIEA-LAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             ECCSSH-------HHHHHHHHHH-HHHTTCEEEEEEEEEEEETT
T ss_pred             ECCCCC-------cchHHHHHHH-HHhCCCcCCCcEEEEEECCc
Confidence            986421       1123566777 55  8999999999876443

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.48  E-value=1.1e-13  Score=116.40  Aligned_cols=104  Identities=21%  Similarity=0.286  Sum_probs=85.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-----Cc
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-----ES  175 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-----~~  175 (257)
                      ++++||+||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+   ..++++++.+|+.+.+....     ++
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG---LSDKIGLRLSPAKDTLAELIHAGQAWQ  140 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCceEEEeCCHHHHHHHhhhccCCCC
Confidence            568999999999999999998632 5799999999999999999986543   24679999999998875432     78


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ||+|++|+...         ....+++. +.+.|+|||++++.
T Consensus       141 fD~v~~~~~~~---------~~~~~l~~-~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          141 YDLIYIDADKA---------NTDLYYEE-SLKLLREGGLIAVD  173 (225)
T ss_dssp             EEEEEECSCGG---------GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             ccEEEECCCHH---------HHHHHHHH-HHHhcCCCcEEEEe
Confidence            99999986421         13568888 79999999999875

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.47  E-value=7.9e-13  Score=111.24  Aligned_cols=130  Identities=10%  Similarity=0.114  Sum_probs=98.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvI  179 (257)
                      .+..+|||||||+|.++..+++..+..++++||+++.+++.|++++...+    .++++++.+|+.++.. -..+.||.|
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~----~~nv~~~~~d~~~l~~~~~~~~~d~v  112 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE----AQNVKLLNIDADTLTDVFEPGEVKRV  112 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC----CSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC----CCCEEEEeCCHHHHHhhcCcCCcCEE
Confidence            45678999999999999999886555799999999999999999876442    3579999999988532 234679999


Q ss_pred             EEcCCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       180 i~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      ++..++|+....  ...+....+++. ++++|+|||.+++.+.      .......+...+.+.
T Consensus       113 ~~~~~~p~~~~~~~~~rl~~~~~l~~-~~~~LkpgG~l~~~td------~~~~~~~~~~~~~~~  169 (213)
T 2fca_A          113 YLNFSDPWPKKRHEKRRLTYSHFLKK-YEEVMGKGGSIHFKTD------NRGLFEYSLKSFSEY  169 (213)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHH-HHHHHTTSCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred             EEECCCCCcCccccccccCcHHHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHHC
Confidence            998777653111  123556789999 7999999999998653      234445556666654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.47  E-value=2.9e-14  Score=122.65  Aligned_cols=105  Identities=21%  Similarity=0.352  Sum_probs=86.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-----~~  174 (257)
                      .++++||+||||+|..+..+++.. +..+|++||+++++++.|++++...+   ..++++++.+|+.+.+...     .+
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~~~~~~~~~  135 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK---QEHKIKLRLGPALDTLHSLLNEGGEH  135 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT---CTTTEEEEESCHHHHHHHHHHHHCSS
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHhhccCCC
Confidence            367899999999999999999853 35799999999999999999987543   3469999999999987653     57


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +||+|++|....         ....+++. +.+.|+|||++++.
T Consensus       136 ~fD~V~~d~~~~---------~~~~~l~~-~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          136 QFDFIFIDADKT---------NYLNYYEL-ALKLVTPKGLIAID  169 (242)
T ss_dssp             CEEEEEEESCGG---------GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CEeEEEEcCChH---------HhHHHHHH-HHHhcCCCeEEEEE
Confidence            899999996411         13568888 79999999999984

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.47  E-value=4e-13  Score=112.07  Aligned_cols=106  Identities=14%  Similarity=0.131  Sum_probs=84.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +.++|||+|||+|.++..+++.. ..+|++||+++.+++.|++++...+    -++++++.+|+.+++....++||+|++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~D~~~~~~~~~~~fD~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLK----AGNARVVNSNAMSFLAQKGTPHNIVFV  128 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence            56799999999999999877753 4699999999999999999987542    268999999999988765678999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHc--CcCCCCcEEEEecC
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAG  220 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGil~~~~~  220 (257)
                      |++-..  .     ...++++. +.  +.|+|||++++...
T Consensus       129 ~~p~~~--~-----~~~~~l~~-l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          129 DPPFRR--G-----LLEETINL-LEDNGWLADEALIYVESE  161 (202)
T ss_dssp             CCSSST--T-----THHHHHHH-HHHTTCEEEEEEEEEEEE
T ss_pred             CCCCCC--C-----cHHHHHHH-HHhcCccCCCcEEEEEEC
Confidence            976211  1     12456666 54  46999999988754

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.47  E-value=3.5e-13  Score=112.37  Aligned_cols=109  Identities=18%  Similarity=0.239  Sum_probs=84.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCc-eeEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKES-YDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~-fDvI  179 (257)
                      ++++|||+|||+|.++..+++.. ..+|++||+|+.+++.|++++...+  +..++++++.+|+.+++.. ..++ ||+|
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  129 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQPQNQPHFDVV  129 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT--CCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhC--CCccceEEEECCHHHHHHhhccCCCCCEE
Confidence            56799999999999999877753 4699999999999999999987542  1126899999999998754 2567 9999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHH--cCcCCCCcEEEEecCC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAGP  221 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~--~~~L~pgGil~~~~~~  221 (257)
                      ++|++-..  .     ...++++. +  .+.|+|||++++...+
T Consensus       130 ~~~~~~~~--~-----~~~~~l~~-~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          130 FLDPPFHF--N-----LAEQAISL-LCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             EECCCSSS--C-----HHHHHHHH-HHHTTCEEEEEEEEEEEES
T ss_pred             EECCCCCC--c-----cHHHHHHH-HHhcCccCCCcEEEEEECC
Confidence            99976211  1     13466777 6  5789999999987643

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.47  E-value=3.2e-13  Score=119.52  Aligned_cols=103  Identities=10%  Similarity=0.158  Sum_probs=81.8

Q ss_pred             cCCCCCeEEEEeccchHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025141           99 HHPNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      ...++++||+||||+|.++ ..+++.+ ..+|++||+|+++++.||+++...+   . .+++++.+|+.++-   .++||
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~g---l-~~v~~v~gDa~~l~---d~~FD  190 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLG---V-DGVNVITGDETVID---GLEFD  190 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHT---C-CSEEEEESCGGGGG---GCCCS
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcC---C-CCeEEEECchhhCC---CCCcC
Confidence            3456899999999988765 4445544 4799999999999999999987543   2 69999999998852   57899


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+++...+   .      ..+++++ +.++|||||++++..
T Consensus       191 vV~~~a~~~---d------~~~~l~e-l~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          191 VLMVAALAE---P------KRRVFRN-IHRYVDTETRIIYRT  222 (298)
T ss_dssp             EEEECTTCS---C------HHHHHHH-HHHHCCTTCEEEEEE
T ss_pred             EEEECCCcc---C------HHHHHHH-HHHHcCCCcEEEEEc
Confidence            999875421   1      3578898 799999999999875

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.46  E-value=1.1e-13  Score=114.56  Aligned_cols=139  Identities=13%  Similarity=0.101  Sum_probs=81.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fD  177 (257)
                      .++++|||+|||+|..+..+++..+..+++++|+++.+++.|++++...+    . +++++.+|+.+.+..   ..++||
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~-~~~~~~~d~~~~~~~~~~~~~~fD  103 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG----A-VVDWAAADGIEWLIERAERGRPWH  103 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCHHHHHHHHHHHHHTTCCBS
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC----C-ceEEEEcchHhhhhhhhhccCccc
Confidence            56789999999999999999997555699999999999999999886542    2 789999999997654   347899


Q ss_pred             EEEEcCCCCCCCC------------cccCCc--------hHHHHHHHHcCcCCCCcE-EEEecCCCCCCCChHHHHHHHH
Q 025141          178 VIIGDLADPIEGG------------PCYKLY--------TKSFYEFVVKPRLNPEGI-FVTQAGPAGIFSHTEVFSCIYN  236 (257)
Q Consensus       178 vIi~D~~~~~~~~------------p~~~L~--------t~ef~~~~~~~~L~pgGi-l~~~~~~~~~~~~~~~~~~~~~  236 (257)
                      +|++|++-.....            |...+.        -..+++. +++.|+|||+ +++...    ......+..+++
T Consensus       104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~  178 (215)
T 4dzr_A          104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAAL-PPYVLARGRAGVFLEVG----HNQADEVARLFA  178 (215)
T ss_dssp             EEEECCCCCC------------------------CTTHHHHHHHTC-CGGGBCSSSEEEEEECT----TSCHHHHHHHTG
T ss_pred             EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHH-HHHHhcCCCeEEEEEEC----CccHHHHHHHHH
Confidence            9999976311000            000000        0677888 7999999999 666543    233444444444


Q ss_pred             HHhhhCCceEEEe
Q 025141          237 TLRQVFKCGCCAL  249 (257)
Q Consensus       237 ~l~~~F~~v~~~~  249 (257)
                      .++.-|..+..+.
T Consensus       179 ~~~~gf~~~~~~~  191 (215)
T 4dzr_A          179 PWRERGFRVRKVK  191 (215)
T ss_dssp             GGGGGTEECCEEE
T ss_pred             HhhcCCceEEEEE
Confidence            3344566655544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.46  E-value=2.4e-13  Score=110.66  Aligned_cols=109  Identities=18%  Similarity=0.215  Sum_probs=85.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fD  177 (257)
                      .++++|||+|||+|..+..+++. +..+|+++|+++.+++.|++++...+   ..++++++.+|+.+++..   ..++||
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~fD  118 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITK---EPEKFEVRKMDANRALEQFYEEKLQFD  118 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhC---CCcceEEEECcHHHHHHHHHhcCCCCC
Confidence            35689999999999999988885 44699999999999999999987542   235899999999997653   257899


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHH--cCcCCCCcEEEEecCC
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAGP  221 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~--~~~L~pgGil~~~~~~  221 (257)
                      +|++|++-..       ....+.++. +  .++|+|||++++....
T Consensus       119 ~i~~~~~~~~-------~~~~~~~~~-l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          119 LVLLDPPYAK-------QEIVSQLEK-MLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             EEEECCCGGG-------CCHHHHHHH-HHHTTCEEEEEEEEEEEET
T ss_pred             EEEECCCCCc-------hhHHHHHHH-HHHhcccCCCCEEEEEeCC
Confidence            9999975211       112455565 5  7899999999987643

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.46  E-value=5.6e-13  Score=115.19  Aligned_cols=128  Identities=15%  Similarity=0.157  Sum_probs=93.4

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi  180 (257)
                      ++.+|||+|||+|.++..+++..+ .+|++||+++.+++.|++++..++   ...+++++.+|+.++.... .++||+|+
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~---~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQ---LEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTT---CTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCC---CcccEEEEECcHHHhhhhhccCCccEEE
Confidence            578999999999999999998754 499999999999999999987653   2458999999999987533 57899999


Q ss_pred             EcCCCCCC-----CCcc--c-------CCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          181 GDLADPIE-----GGPC--Y-------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       181 ~D~~~~~~-----~~p~--~-------~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      +|++-...     ..+.  .       .....++++. +.+.|+|||++++-.. +      ....++...+++.
T Consensus       125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~-~------~~~~~~~~~l~~~  191 (259)
T 3lpm_A          125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRV-AASLLKQGGKANFVHR-P------ERLLDIIDIMRKY  191 (259)
T ss_dssp             ECCCC-----------------------HHHHHHHHH-HHHHEEEEEEEEEEEC-T------TTHHHHHHHHHHT
T ss_pred             ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHH-HHHHccCCcEEEEEEc-H------HHHHHHHHHHHHC
Confidence            99762110     0000  0       0112468888 7999999999998432 1      2244566666653

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.45  E-value=8.4e-13  Score=111.37  Aligned_cols=137  Identities=15%  Similarity=0.104  Sum_probs=97.6

Q ss_pred             CCCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++++|||+||| +|.++..+++.. ..+|+++|+++.+++.|++++..++     .+++++.+|+..+.....++||+|
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~fD~I  127 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN-----SNVRLVKSNGGIIKGVVEGTFDVI  127 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT-----CCCEEEECSSCSSTTTCCSCEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEeCCchhhhhcccCceeEE
Confidence            467899999999 999999998864 3699999999999999999987653     289999999754433334789999


Q ss_pred             EEcCCCCCCC-----Cc--------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceE
Q 025141          180 IGDLADPIEG-----GP--------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGC  246 (257)
Q Consensus       180 i~D~~~~~~~-----~p--------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~  246 (257)
                      +++++-....     .+        ...-....+++. +.+.|+|||.+++...     ........+.+.+++..-.+.
T Consensus       128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~-----~~~~~~~~~~~~l~~~g~~~~  201 (230)
T 3evz_A          128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEE-AFDHLNPGGKVALYLP-----DKEKLLNVIKERGIKLGYSVK  201 (230)
T ss_dssp             EECCCCC---------------CCSSSCHHHHHHHHH-HGGGEEEEEEEEEEEE-----SCHHHHHHHHHHHHHTTCEEE
T ss_pred             EECCCCcCCccccccChhhhhccCccchHHHHHHHHH-HHHHhCCCeEEEEEec-----ccHhHHHHHHHHHHHcCCceE
Confidence            9997621100     00        000112678998 7999999999988542     123456677777777643444


Q ss_pred             EEe
Q 025141          247 CAL  249 (257)
Q Consensus       247 ~~~  249 (257)
                      ...
T Consensus       202 ~~~  204 (230)
T 3evz_A          202 DIK  204 (230)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.45  E-value=9e-14  Score=121.88  Aligned_cols=130  Identities=15%  Similarity=0.040  Sum_probs=97.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.++|||+|||+|.++..+++... .+|+++|+++.+++.|++++..++   ...+++++.+|+.++..  .++||+|+
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~-~~V~~vD~s~~~~~~a~~n~~~n~---~~~~v~~~~~D~~~~~~--~~~fD~Vi  197 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNK---VEDRMSAYNMDNRDFPG--ENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEECCHHHhcc--cCCccEEE
Confidence            4578999999999999999998743 389999999999999999987664   23579999999998875  67899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC  247 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  247 (257)
                      +|++..          ..++++. +.+.|+|||++++....+........+..+.+.+++..-.+..
T Consensus       198 ~~~p~~----------~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          198 MGYVVR----------THEFIPK-ALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             ECCCSS----------GGGGHHH-HHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             ECCchh----------HHHHHHH-HHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence            987521          1356777 6889999999998654321112234455666667765444443

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.45  E-value=1.1e-12  Score=107.09  Aligned_cols=112  Identities=16%  Similarity=0.086  Sum_probs=82.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ++..+|||+|||+|..+..+++.  ..+|+++|+++.+++.|++++...+    -++++++.+|........+++||+|+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~~~~~l~~~~~~~fD~v~   94 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLG----IENTELILDGHENLDHYVREPIRAAI   94 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHT----CCCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCcHHHHHhhccCCcCEEE
Confidence            45689999999999999999987  4699999999999999999987542    26899999887664333467899999


Q ss_pred             EcCC-CCCCCCcc--cCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLA-DPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~-~~~~~~p~--~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +++. -+......  ..-....+++. +.+.|+|||.+++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           95 FNLGYLPSADKSVITKPHTTLEAIEK-ILDRLEVGGRLAIMI  135 (185)
T ss_dssp             EEEC-----------CHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EeCCCCCCcchhcccChhhHHHHHHH-HHHhcCCCcEEEEEE
Confidence            9842 22100000  00113467788 789999999988754

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.44  E-value=1.1e-12  Score=112.50  Aligned_cols=128  Identities=20%  Similarity=0.249  Sum_probs=98.4

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ..++++|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++...+   ...+++++.+|+.+.+  ..++||+
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~~~~~D~  165 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG---FDDRVTIKLKDIYEGI--EEENVDH  165 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT---CTTTEEEECSCGGGCC--CCCSEEE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC---CCCceEEEECchhhcc--CCCCcCE
Confidence            345689999999999999999987 545799999999999999999986542   2356999999998764  2467999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh---CCceEEEee
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV---FKCGCCALF  250 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~---F~~v~~~~~  250 (257)
                      |++|++++           .++++. +.+.|+|||.+++...      .......+.+.+++.   |..+..+..
T Consensus       166 v~~~~~~~-----------~~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~~g~~f~~~~~~e~  222 (255)
T 3mb5_A          166 VILDLPQP-----------ERVVEH-AAKALKPGGFFVAYTP------CSNQVMRLHEKLREFKDYFMKPRTINV  222 (255)
T ss_dssp             EEECSSCG-----------GGGHHH-HHHHEEEEEEEEEEES------SHHHHHHHHHHHHHTGGGBSCCEEECC
T ss_pred             EEECCCCH-----------HHHHHH-HHHHcCCCCEEEEEEC------CHHHHHHHHHHHHHcCCCccccEEEEE
Confidence            99987643           245677 6899999999998642      234455667777765   777766543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.44  E-value=5.7e-13  Score=115.94  Aligned_cols=108  Identities=16%  Similarity=0.262  Sum_probs=82.4

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      .++..+|||||||+|..+..+++..  +..+|++||+++.+++.||+++...+   ...+++++.+|+.++   ..+.||
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~---~~~~v~~~~~D~~~~---~~~~~d  141 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDI---AIENAS  141 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCTTTC---CCCSEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc---cCceEEEeecccccc---cccccc
Confidence            4567899999999999999998752  34589999999999999999876432   346899999998664   236799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|++...-... .+   .....++++ +++.|||||++++.
T Consensus       142 ~v~~~~~l~~~-~~---~~~~~~l~~-i~~~LkpGG~lii~  177 (261)
T 4gek_A          142 MVVLNFTLQFL-EP---SERQALLDK-IYQGLNPGGALVLS  177 (261)
T ss_dssp             EEEEESCGGGS-CH---HHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             cceeeeeeeec-Cc---hhHhHHHHH-HHHHcCCCcEEEEE
Confidence            99987542221 11   112357898 79999999999874

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.44  E-value=8.8e-13  Score=112.60  Aligned_cols=121  Identities=17%  Similarity=0.189  Sum_probs=91.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDvI  179 (257)
                      ++.+|||||||+|..+..++...+..+|++||+++.+++.|++++...+    .++++++.+|+.++...  ..++||+|
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ----LENTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT----CSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEeccHHHhcccccccCCccEE
Confidence            5689999999999999888864445799999999999999999886542    24699999999886532  24789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      +++...    .      ...+++. +.+.|+|||++++..+..    .......+.+.+++.
T Consensus       146 ~~~~~~----~------~~~~l~~-~~~~LkpgG~l~~~~g~~----~~~~~~~~~~~l~~~  192 (240)
T 1xdz_A          146 TARAVA----R------LSVLSEL-CLPLVKKNGLFVALKAAS----AEEELNAGKKAITTL  192 (240)
T ss_dssp             EEECCS----C------HHHHHHH-HGGGEEEEEEEEEEECC-----CHHHHHHHHHHHHHT
T ss_pred             EEeccC----C------HHHHHHH-HHHhcCCCCEEEEEeCCC----chHHHHHHHHHHHHc
Confidence            997631    1      2578888 799999999998865432    234455566666654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.43  E-value=6e-13  Score=106.56  Aligned_cols=105  Identities=14%  Similarity=0.103  Sum_probs=83.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~fDv  178 (257)
                      ++++|||+|||+|..+..+++..  .+|+++|+++.+++.|++++...+    . +++++.+|+.+++...   .++||+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~----~-~~~~~~~d~~~~~~~~~~~~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTG----L-GARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHT----C-CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHcC----C-ceEEEeccHHHHHHhhhccCCceEE
Confidence            66899999999999999999864  359999999999999999987552    2 8999999999876432   348999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHc--CcCCCCcEEEEecCCC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAGPA  222 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGil~~~~~~~  222 (257)
                      |+++++-..        ...++++. +.  +.|+|||++++...+.
T Consensus       114 i~~~~~~~~--------~~~~~~~~-~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          114 AFMAPPYAM--------DLAALFGE-LLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             EEECCCTTS--------CTTHHHHH-HHHHTCEEEEEEEEEEEETT
T ss_pred             EEECCCCch--------hHHHHHHH-HHhhcccCCCcEEEEEeCCc
Confidence            999975321        12356677 56  8999999999876443

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.43  E-value=5.4e-13  Score=113.45  Aligned_cols=109  Identities=9%  Similarity=0.086  Sum_probs=83.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvI  179 (257)
                      .+..+||+||||+|..+..+++.. ..+|+++|+++.+++.|+++....     .++++++.+|+.+.+.. .+++||+|
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~fD~V  132 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ-----THKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGC-----SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhc-----CCCeEEEecCHHHhhcccCCCceEEE
Confidence            456799999999999999998754 359999999999999999987643     26899999999987543 34789999


Q ss_pred             EEcCCCCCCCCcccCCch-HHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYT-KSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t-~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++|.+...  .+..+... ..++++ ++++|||||++++.
T Consensus       133 ~~d~~~~~--~~~~~~~~~~~~l~~-~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          133 LYDTYPLS--EETWHTHQFNFIKNH-AFRLLKPGGVLTYC  169 (236)
T ss_dssp             EECCCCCB--GGGTTTHHHHHHHHT-HHHHEEEEEEEEEC
T ss_pred             EECCcccc--hhhhhhhhHHHHHHH-HHHhcCCCeEEEEE
Confidence            99754321  11112212 256888 79999999999863

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.43  E-value=4.5e-12  Score=105.94  Aligned_cols=118  Identities=16%  Similarity=0.152  Sum_probs=91.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|.++..+++.  ..+|+++|+++++++.|++++...+   ...+++++.+|+.+.+... ++||+|+
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~~~~~-~~~D~v~  127 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYG---LSPRMRAVQGTAPAALADL-PLPEAVF  127 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCTTGGGTTS-CCCSEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCEEEEeCchhhhcccC-CCCCEEE
Confidence            45689999999999999999987  4699999999999999999876542   1238999999998866443 5799999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F  242 (257)
                      ++...           ..++++. +.+.|+|||++++...      ..+....+.+.+++.-
T Consensus       128 ~~~~~-----------~~~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~~g  171 (204)
T 3njr_A          128 IGGGG-----------SQALYDR-LWEWLAPGTRIVANAV------TLESETLLTQLHARHG  171 (204)
T ss_dssp             ECSCC-----------CHHHHHH-HHHHSCTTCEEEEEEC------SHHHHHHHHHHHHHHC
T ss_pred             ECCcc-----------cHHHHHH-HHHhcCCCcEEEEEec------CcccHHHHHHHHHhCC
Confidence            87521           1237888 7999999999998753      2445666666676653

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.43  E-value=5e-13  Score=112.67  Aligned_cols=105  Identities=20%  Similarity=0.324  Sum_probs=85.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---C--C
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---K--E  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~--~  174 (257)
                      .++++||+||||+|..+..+++. ++..+|+++|+++.+++.|++++...+   ..++++++.+|+.+.+...   .  +
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~i~~~~~d~~~~~~~~~~~~~~~  144 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE---AEHKIDLRLKPALETLDELLAAGEAG  144 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC---CCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence            46789999999999999999986 325799999999999999999987543   2468999999998876542   1  6


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +||+|++|+...         ....+++. +.+.|+|||++++.
T Consensus       145 ~~D~v~~d~~~~---------~~~~~l~~-~~~~L~pgG~lv~~  178 (229)
T 2avd_A          145 TFDVAVVDADKE---------NCSAYYER-CLQLLRPGGILAVL  178 (229)
T ss_dssp             CEEEEEECSCST---------THHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CccEEEECCCHH---------HHHHHHHH-HHHHcCCCeEEEEE
Confidence            899999986521         13578888 78999999999884

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.43  E-value=1e-12  Score=112.62  Aligned_cols=134  Identities=12%  Similarity=0.079  Sum_probs=94.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--CCCCCCCeEEEEcchHHHHh--cCCCce
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSDPRLELVINDARAELE--SRKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--~~~~~~rv~i~~~Da~~~l~--~~~~~f  176 (257)
                      .+..+||+||||+|.++..+++..+...|++||+++.+++.|++.+....  .....++++++.+|+.+++.  -..++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            34568999999999999999987555799999999999999998764210  00124689999999987654  245789


Q ss_pred             eEEEEcCCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          177 DVIIGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       177 DvIi~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      |.|++..++|+....  ...+....+++. ++++|+|||.+++.+.      .......+.+.+.+.
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~-~~~~LkpGG~l~~~td------~~~~~~~~~~~l~~~  184 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAE-YAYVLRVGGLVYTITD------VLELHDWMCTHFEEH  184 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHH-HHHHEEEEEEEEEEES------CHHHHHHHHHHHHTS
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHH-HHHHCCCCCEEEEEeC------CHHHHHHHHHHHHHC
Confidence            999998777652110  123445789999 7999999999998753      234455555656543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.43  E-value=1.2e-12  Score=117.73  Aligned_cols=129  Identities=12%  Similarity=0.176  Sum_probs=91.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~fD  177 (257)
                      .++++|||+|||+|.++..+++. +. +|++||+++.+++.|++++..++  +.+.+++++.+|+.+++...   .++||
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~-ga-~V~~VD~s~~al~~a~~n~~~~g--l~~~~v~~i~~D~~~~l~~~~~~~~~fD  227 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAA-GA-EVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFIQREERRGSTYD  227 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT-TC-EEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred             CCCCcEEEcccccCHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECcHHHHHHHHHhcCCCce
Confidence            35679999999999999999985 43 99999999999999999987653  22336999999999988542   46899


Q ss_pred             EEEEcCCCCCCCCcccCCc-----hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHH
Q 025141          178 VIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN  236 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~  236 (257)
                      +|++|++.-.. .+...++     ..++++. +.+.|+|||++++...+.. ......+..+++
T Consensus       228 ~Ii~dPP~~~~-~~~~~~~~~~~~~~~ll~~-~~~~LkpgG~lli~~~~~~-~~~~~~~~~~l~  288 (332)
T 2igt_A          228 IILTDPPKFGR-GTHGEVWQLFDHLPLMLDI-CREILSPKALGLVLTAYSI-RASFYSMHELMR  288 (332)
T ss_dssp             EEEECCCSEEE-CTTCCEEEHHHHHHHHHHH-HHHTBCTTCCEEEEEECCT-TSCHHHHHHHHH
T ss_pred             EEEECCccccC-CchHHHHHHHHHHHHHHHH-HHHhcCcCcEEEEEECCCC-CCCHHHHHHHHH
Confidence            99999873110 1111111     2477887 6899999999666543321 223444444444

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.42  E-value=8.4e-13  Score=108.78  Aligned_cols=115  Identities=13%  Similarity=0.041  Sum_probs=87.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+..+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++...+   ..++++++.+|+.++....+++||+|
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~fD~v   97 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN---LIDRVTLIKDGHQNMDKYIDCPVKAV   97 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT---CGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCeEEEECCHHHHhhhccCCceEE
Confidence            456799999999999999998862 34699999999999999999987542   23689999999988765556889999


Q ss_pred             EEcCCC-CCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLAD-PIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~-~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +++++- +.....  ...-...++++. +.+.|+|||++++..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSK-AMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEcCCcccCcccccccCcccHHHHHHH-HHHhCcCCCEEEEEE
Confidence            999742 211000  000112468898 799999999998764

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.42  E-value=2.5e-12  Score=111.01  Aligned_cols=122  Identities=18%  Similarity=0.242  Sum_probs=92.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDv  178 (257)
                      .++.+|||||||+|..+..++...+..+|++||+++..++.|+++....+    -.+++++++|+.++...  ..++||+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----l~~v~~~~~d~~~~~~~~~~~~~fD~  154 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG----LKGARALWGRAEVLAREAGHREAYAR  154 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT----CSSEEEEECCHHHHTTSTTTTTCEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCceEEEECcHHHhhcccccCCCceE
Confidence            35689999999999999988876555799999999999999999987542    24699999999887642  2478999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      |++....+          -..+++. +.+.|+|||.+++..+..    ..+.+..+.+.++..
T Consensus       155 I~s~a~~~----------~~~ll~~-~~~~LkpgG~l~~~~g~~----~~~e~~~~~~~l~~~  202 (249)
T 3g89_A          155 AVARAVAP----------LCVLSEL-LLPFLEVGGAAVAMKGPR----VEEELAPLPPALERL  202 (249)
T ss_dssp             EEEESSCC----------HHHHHHH-HGGGEEEEEEEEEEECSC----CHHHHTTHHHHHHHH
T ss_pred             EEECCcCC----------HHHHHHH-HHHHcCCCeEEEEEeCCC----cHHHHHHHHHHHHHc
Confidence            99975421          1467888 799999999988765432    234445555555543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.42  E-value=4.6e-12  Score=110.41  Aligned_cols=135  Identities=14%  Similarity=0.150  Sum_probs=96.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||+|||+|..+..+++..+..+|+++|+++.+++.|++++...+    .++++++.+|+.+.+.  .++||+|+
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~----~~~v~~~~~d~~~~~~--~~~fD~Iv  181 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA----IKNIHILQSDWFSALA--GQQFAMIV  181 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT----CCSEEEECCSTTGGGT--TCCEEEEE
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEEcchhhhcc--cCCccEEE
Confidence            45679999999999999999976455799999999999999999987542    2479999999987653  46899999


Q ss_pred             EcCCCCCC-----------CCcccCC--------chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          181 GDLADPIE-----------GGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       181 ~D~~~~~~-----------~~p~~~L--------~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      ++++-...           ..|...+        ....+++. +.+.|+|||++++..+.    .+.+   .+.+.+++.
T Consensus       182 ~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~-~~~~LkpgG~l~~~~~~----~~~~---~~~~~l~~~  253 (276)
T 2b3t_A          182 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQ-SRNALVSGGFLLLEHGW----QQGE---AVRQAFILA  253 (276)
T ss_dssp             ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHH-HGGGEEEEEEEEEECCS----SCHH---HHHHHHHHT
T ss_pred             ECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEECc----hHHH---HHHHHHHHC
Confidence            99763211           0121122        23577888 79999999999987542    2333   334444443


Q ss_pred             -CCceEEEe
Q 025141          242 -FKCGCCAL  249 (257)
Q Consensus       242 -F~~v~~~~  249 (257)
                       |..+..+.
T Consensus       254 Gf~~v~~~~  262 (276)
T 2b3t_A          254 GYHDVETCR  262 (276)
T ss_dssp             TCTTCCEEE
T ss_pred             CCcEEEEEe
Confidence             66555543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.41  E-value=1.6e-12  Score=119.11  Aligned_cols=130  Identities=12%  Similarity=0.104  Sum_probs=93.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fD  177 (257)
                      .+.++|||+|||+|.++..+++. +..+|++||+++.+++.|++++..++  +.+.+++++.+|+.+++..   ..++||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~--~~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANH--LDMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTT--CCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHHhCCCcc
Confidence            45689999999999999999985 45699999999999999999998663  2222899999999998864   246899


Q ss_pred             EEEEcCCCCCC-CCcccCCc--hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHH
Q 025141          178 VIIGDLADPIE-GGPCYKLY--TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN  236 (257)
Q Consensus       178 vIi~D~~~~~~-~~p~~~L~--t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~  236 (257)
                      +|++|++.... ........  -.++++. +.+.|+|||++++.+.++.  ...+.+..+++
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~-~~~~L~pgG~l~~~~~~~~--~~~~~~~~~i~  346 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQ-GLEILSENGLIIASTNAAN--MTVSQFKKQIE  346 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHH-HHHTEEEEEEEEEEECCTT--SCHHHHHHHHH
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCCc--CCHHHHHHHHH
Confidence            99999875210 00000111  1345666 5899999999998876653  23444444443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.41  E-value=6e-13  Score=112.83  Aligned_cols=104  Identities=22%  Similarity=0.322  Sum_probs=85.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CCceeEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~~fDvI  179 (257)
                      ++++||+||||+|..+..+++..+..+|+++|+++..++.|++++...+   ..++++++.+|+.+.+...  .++||+|
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~fD~I  130 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG---LESRIELLFGDALQLGEKLELYPLFDVL  130 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECCHHHHHHhcccCCCccEE
Confidence            5679999999999999999987545799999999999999999986542   2458999999998876543  5789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++|...+         ...++++. +.+.|+|||++++.
T Consensus       131 ~~~~~~~---------~~~~~l~~-~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          131 FIDAAKG---------QYRRFFDM-YSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEGGGS---------CHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             EECCCHH---------HHHHHHHH-HHHHcCCCeEEEEE
Confidence            9986421         13578888 79999999999986

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.41  E-value=1.9e-12  Score=107.38  Aligned_cols=107  Identities=12%  Similarity=0.102  Sum_probs=83.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++.+ ..+++++|+++.+++.|++.+...+   ..++++++.+|+.+. ....++||+|+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~~D~v~  116 (219)
T 3dlc_A           42 ITAGTCIDIGSGPGALSIALAKQS-DFSIRALDFSKHMNEIALKNIADAN---LNDRIQIVQGDVHNI-PIEDNYADLIV  116 (219)
T ss_dssp             CCEEEEEEETCTTSHHHHHHHHHS-EEEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECBTTBC-SSCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHhcc---ccCceEEEEcCHHHC-CCCcccccEEE
Confidence            344599999999999999999873 4699999999999999999886542   346899999998663 23357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-...      -....+++. +++.|+|||.+++..
T Consensus       117 ~~~~l~~~------~~~~~~l~~-~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          117 SRGSVFFW------EDVATAFRE-IYRILKSGGKTYIGG  148 (219)
T ss_dssp             EESCGGGC------SCHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECchHhhc------cCHHHHHHH-HHHhCCCCCEEEEEe
Confidence            97642211      113578898 799999999998853

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.41  E-value=1.2e-12  Score=108.53  Aligned_cols=130  Identities=16%  Similarity=0.184  Sum_probs=98.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||||||+|.++..+++. +..+|+++|+++.+++.|++++...+    .++++++.+|+.++.   .++||+|+
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~---~~~fD~i~  130 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNG----IYDIALQKTSLLADV---DGKFDLIV  130 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT----CCCCEEEESSTTTTC---CSCEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEeccccccC---CCCceEEE
Confidence            46789999999999999998886 44699999999999999999987542    234999999987753   47899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEeecCcc
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALFSSYS  254 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~~~~  254 (257)
                      ++.+..       .  ...+++. +++.|+|||.+++..-.      ......+.+.+++. |..+.......|.
T Consensus       131 ~~~~~~-------~--~~~~l~~-~~~~L~~gG~l~~~~~~------~~~~~~~~~~~~~~Gf~~~~~~~~~~w~  189 (205)
T 3grz_A          131 ANILAE-------I--LLDLIPQ-LDSHLNEDGQVIFSGID------YLQLPKIEQALAENSFQIDLKMRAGRWI  189 (205)
T ss_dssp             EESCHH-------H--HHHHGGG-SGGGEEEEEEEEEEEEE------GGGHHHHHHHHHHTTEEEEEEEEETTEE
T ss_pred             ECCcHH-------H--HHHHHHH-HHHhcCCCCEEEEEecC------cccHHHHHHHHHHcCCceEEeeccCCEE
Confidence            985421       1  2577888 79999999999885311      12244566666665 7777766666664

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.40  E-value=1.1e-11  Score=100.49  Aligned_cols=121  Identities=18%  Similarity=0.204  Sum_probs=94.7

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ..++.+||++|||+|..+..+++..  .+|+++|+++.+++.+++++...+   ..++++++.+|+.+.+... ++||+|
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~-~~~D~v  104 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG---LGDNVTLMEGDAPEALCKI-PDIDIA  104 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT---CCTTEEEEESCHHHHHTTS-CCEEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC---CCcceEEEecCHHHhcccC-CCCCEE
Confidence            3466899999999999999999864  699999999999999999886542   2368999999998866432 489999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-C
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-F  242 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F  242 (257)
                      +++...+       +  ..++++. +.+.|+|||.+++...      .......+.+.+++. |
T Consensus       105 ~~~~~~~-------~--~~~~l~~-~~~~l~~gG~l~~~~~------~~~~~~~~~~~l~~~g~  152 (192)
T 1l3i_A          105 VVGGSGG-------E--LQEILRI-IKDKLKPGGRIIVTAI------LLETKFEAMECLRDLGF  152 (192)
T ss_dssp             EESCCTT-------C--HHHHHHH-HHHTEEEEEEEEEEEC------BHHHHHHHHHHHHHTTC
T ss_pred             EECCchH-------H--HHHHHHH-HHHhcCCCcEEEEEec------CcchHHHHHHHHHHCCC
Confidence            9985421       1  2678898 7999999999988642      244566777777765 5

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.40  E-value=7.3e-13  Score=112.81  Aligned_cols=104  Identities=22%  Similarity=0.317  Sum_probs=84.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---C--Cc
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---K--ES  175 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~--~~  175 (257)
                      ++++||+||||+|..+..+++..+ ..+|+++|+++..++.|++++...+   ..++++++.+|+.+.+...   .  ++
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG---VAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            568999999999999999998632 4699999999999999999986442   2358999999998876542   2  68


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ||+|++|...+         ...++++. +.+.|+|||++++.
T Consensus       149 fD~V~~d~~~~---------~~~~~l~~-~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          149 FDLIFIDADKR---------NYPRYYEI-GLNLLRRGGLMVID  181 (232)
T ss_dssp             EEEEEECSCGG---------GHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             cCEEEECCCHH---------HHHHHHHH-HHHHcCCCeEEEEe
Confidence            99999986421         13578888 79999999999985

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.39  E-value=9e-13  Score=114.51  Aligned_cols=99  Identities=19%  Similarity=0.245  Sum_probs=79.4

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+...+|||||||+|..+..++++.  .+|++||+++.+++.|++          .++++++.+|+.+. .-.+++||+|
T Consensus        37 ~~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~----------~~~v~~~~~~~e~~-~~~~~sfD~v  103 (257)
T 4hg2_A           37 APARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALR----------HPRVTYAVAPAEDT-GLPPASVDVA  103 (257)
T ss_dssp             SSCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCC----------CTTEEEEECCTTCC-CCCSSCEEEE
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhh----------cCCceeehhhhhhh-cccCCcccEE
Confidence            4667899999999999999999863  589999999999987764          36899999998653 3345789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++...-++       +-...++++ ++++|||||++++..
T Consensus       104 ~~~~~~h~-------~~~~~~~~e-~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          104 IAAQAMHW-------FDLDRFWAE-LRRVARPGAVFAAVT  135 (257)
T ss_dssp             EECSCCTT-------CCHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEeeehhH-------hhHHHHHHH-HHHHcCCCCEEEEEE
Confidence            98654333       123578999 799999999998765

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.38  E-value=3.3e-12  Score=109.45  Aligned_cols=117  Identities=14%  Similarity=0.136  Sum_probs=88.4

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC----CCCCCeEEEEcchHHHHhc--CCCc
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA----FSDPRLELVINDARAELES--RKES  175 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~----~~~~rv~i~~~Da~~~l~~--~~~~  175 (257)
                      +..+|||||||+|.++..+++..+..+|++||+++.+++.+++++......    ..-++++++.+|+.+++..  ....
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            457899999999999999998755569999999999999999987543100    0125899999999987763  3578


Q ss_pred             eeEEEEcCCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          176 YDVIIGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|.|++..++++....  ...+...++++. +.++|+|||++++.+
T Consensus       129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~-~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          129 LSKMFFCFPDPHFKQRKHKARIITNTLLSE-YAYVLKEGGVVYTIT  173 (246)
T ss_dssp             EEEEEEESCCCC------CSSCCCHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cCEEEEECCCcccccchhHHhhccHHHHHH-HHHHcCCCCEEEEEe
Confidence            9999888766542110  123445789999 799999999999864

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.38  E-value=1.3e-12  Score=111.43  Aligned_cols=106  Identities=20%  Similarity=0.319  Sum_probs=84.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-------
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-------  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-------  172 (257)
                      .++++||+||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+   ..++++++.+|+.+.+...       
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~~~~~~~~~~~~  135 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG---LENKIFLKLGSALETLQVLIDSKSAP  135 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCEEEEECCHHHHHHHHHhhcccc
Confidence            3578999999999999999998633 5799999999999999999986442   2357999999998876532       


Q ss_pred             --------C-CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          173 --------K-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       173 --------~-~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                              . ++||+|+++...+         ...++++. +.+.|+|||++++..
T Consensus       136 ~~~~~f~~~~~~fD~I~~~~~~~---------~~~~~l~~-~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          136 SWASDFAFGPSSIDLFFLDADKE---------NYPNYYPL-ILKLLKPGGLLIADN  181 (239)
T ss_dssp             GGGTTTCCSTTCEEEEEECSCGG---------GHHHHHHH-HHHHEEEEEEEEEEC
T ss_pred             cccccccCCCCCcCEEEEeCCHH---------HHHHHHHH-HHHHcCCCeEEEEEc
Confidence                    2 6899999985311         12477888 799999999999853

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.37  E-value=1.3e-12  Score=114.09  Aligned_cols=124  Identities=15%  Similarity=0.057  Sum_probs=93.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.++|||+|||+|.++..+++..+..+|++||+++.+++.|++++..++    -++++++.+|+.++ .. .++||+|+
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~----l~~~~~~~~d~~~~-~~-~~~~D~Vi  191 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK----LNNVIPILADNRDV-EL-KDVADRVI  191 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT----CSSEEEEESCGGGC-CC-TTCEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEECChHHc-Cc-cCCceEEE
Confidence            45689999999999999999987445699999999999999999988663    35789999999987 44 57899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F  242 (257)
                      +|++.    .      ..+++.. +.+.|+|||++++.+.... ....+.+.+..+.+++.+
T Consensus       192 ~d~p~----~------~~~~l~~-~~~~LkpgG~l~~s~~~~~-~~~~~~~~~~~~~~~~~~  241 (272)
T 3a27_A          192 MGYVH----K------THKFLDK-TFEFLKDRGVIHYHETVAE-KIMYERPIERLKFYAEKN  241 (272)
T ss_dssp             ECCCS----S------GGGGHHH-HHHHEEEEEEEEEEEEEEG-GGTTTHHHHHHHHHHHHT
T ss_pred             ECCcc----c------HHHHHHH-HHHHcCCCCEEEEEEcCcc-ccccccHHHHHHHHHHHh
Confidence            99763    1      1345677 6889999999987653321 011134556666666654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.37  E-value=2.7e-12  Score=112.99  Aligned_cols=110  Identities=18%  Similarity=0.081  Sum_probs=84.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|++.+...+   ...+++++.+|+.++    .++||+|+
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~----~~~fD~v~  142 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD---SPRRKEVRIQGWEEF----DEPVDRIV  142 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC---CSSCEEEEECCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECCHHHc----CCCccEEE
Confidence            4567999999999999999998744 689999999999999999886542   245899999999876    68899999


Q ss_pred             EcCCCCCCCCcc---cCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPC---YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~---~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-.....|.   ..-....+++. +++.|+|||++++..
T Consensus       143 ~~~~~~~~~d~~~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          143 SLGAFEHFADGAGDAGFERYDTFFKK-FYNLTPDDGRMLLHT  183 (302)
T ss_dssp             EESCGGGTTCCSSCCCTTHHHHHHHH-HHHSSCTTCEEEEEE
T ss_pred             EcchHHhcCccccccchhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            875421110110   01123588998 799999999999875

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.37  E-value=2.9e-12  Score=110.70  Aligned_cols=106  Identities=14%  Similarity=0.107  Sum_probs=85.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++.+...+   ..++++++.+|+.+. ....++||+|+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~i~  119 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG---LQNRVTGIVGSMDDL-PFRNEELDLIW  119 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-CCCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC---CCcCcEEEEcChhhC-CCCCCCEEEEE
Confidence            45789999999999999999997 44699999999999999999876442   346899999998663 22357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-.       ++-...+++. +++.|+|||++++..
T Consensus       120 ~~~~~~-------~~~~~~~l~~-~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          120 SEGAIY-------NIGFERGLNE-WRKYLKKGGYLAVSE  150 (267)
T ss_dssp             ESSCGG-------GTCHHHHHHH-HGGGEEEEEEEEEEE
T ss_pred             EcCCce-------ecCHHHHHHH-HHHHcCCCCEEEEEE
Confidence            875421       2224678998 799999999998764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.36  E-value=5e-12  Score=124.19  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=90.7

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +.++||++|||+|+++..+++. +..+|++||+++.+++.|++++..++  +.+++++++.+|++++++...++||+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ng--l~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNG--LTGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT--CCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHhcCCCccEEEE
Confidence            5789999999999999998884 45689999999999999999998764  23368999999999999877789999999


Q ss_pred             cCCCCCCCCcccCCc-----hHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          182 DLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       182 D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      |++.-.........+     -.++++. +.+.|+|||++++.+.+.
T Consensus       616 DPP~f~~~~~~~~~~~~~~~~~~ll~~-a~~~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          616 DPPTFSNSKRMEDAFDVQRDHLALMKD-LKRLLRAGGTIMFSNNKR  660 (703)
T ss_dssp             CCCSBC-------CCBHHHHHHHHHHH-HHHHEEEEEEEEEEECCT
T ss_pred             CCccccCCccchhHHHHHHHHHHHHHH-HHHhcCCCcEEEEEECCc
Confidence            987411000000111     2356777 689999999999876553

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.36  E-value=3.8e-12  Score=110.92  Aligned_cols=108  Identities=18%  Similarity=0.284  Sum_probs=85.7

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+++.+||+||||+|.++..+++. + .+|+++|+++.+++.|++.+...+   ..++++++.+|+.+......++||+|
T Consensus        66 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~fD~v  140 (285)
T 4htf_A           66 GPQKLRVLDAGGGEGQTAIKMAER-G-HQVILCDLSAQMIDRAKQAAEAKG---VSDNMQFIHCAAQDVASHLETPVDLI  140 (285)
T ss_dssp             CSSCCEEEEETCTTCHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHC-C---CGGGEEEEESCGGGTGGGCSSCEEEE
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEEcCHHHhhhhcCCCceEE
Confidence            345789999999999999999986 3 599999999999999999876432   23689999999988764556899999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++...-..  .+    -...+++. ++++|+|||++++..
T Consensus       141 ~~~~~l~~--~~----~~~~~l~~-~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          141 LFHAVLEW--VA----DPRSVLQT-LWSVLRPGGVLSLMF  173 (285)
T ss_dssp             EEESCGGG--CS----CHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EECchhhc--cc----CHHHHHHH-HHHHcCCCeEEEEEE
Confidence            99754221  11    12578898 799999999998754

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.36  E-value=3.5e-12  Score=106.75  Aligned_cols=109  Identities=21%  Similarity=0.285  Sum_probs=81.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-CCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-FSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++++|||||||+|..+..+++..+..+++++|+++.+++.|++.+...+-. ...++++++.+|+.. +....++||+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V  106 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY-RDKRFSGYDAA  106 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS-CCGGGTTCSEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc-cccccCCCCEE
Confidence            4678999999999999999998755579999999999999999987643200 011389999999732 23334789999


Q ss_pred             EEcCCCCCCCCcccCCc---hHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLY---TKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~---t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++...-.       ++-   ...+++. +++.|+|||+++..
T Consensus       107 ~~~~~l~-------~~~~~~~~~~l~~-~~~~LkpgG~~i~~  140 (219)
T 3jwg_A          107 TVIEVIE-------HLDENRLQAFEKV-LFEFTRPQTVIVST  140 (219)
T ss_dssp             EEESCGG-------GCCHHHHHHHHHH-HHTTTCCSEEEEEE
T ss_pred             EEHHHHH-------hCCHHHHHHHHHH-HHHhhCCCEEEEEc
Confidence            9864321       222   2478898 79999999987764

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.35  E-value=5.8e-12  Score=105.34  Aligned_cols=112  Identities=17%  Similarity=0.154  Sum_probs=81.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-CCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-FSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++++|||||||+|.++..+++..+..+|+++|+++.+++.|++.+...+-. ...++++++.+|+. ......++||+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~v  106 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT-YQDKRFHGYDAA  106 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT-SCCGGGCSCSEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc-cccccCCCcCEE
Confidence            4568999999999999999998755579999999999999999987643200 01138999999973 233334789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++...-..  -+  .-....+++. +++.|+|||++++.
T Consensus       107 ~~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~li~~  140 (217)
T 3jwh_A          107 TVIEVIEH--LD--LSRLGAFERV-LFEFAQPKIVIVTT  140 (217)
T ss_dssp             EEESCGGG--CC--HHHHHHHHHH-HHTTTCCSEEEEEE
T ss_pred             eeHHHHHc--CC--HHHHHHHHHH-HHHHcCCCEEEEEc
Confidence            98754211  01  0012578898 79999999988764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.35  E-value=5.7e-12  Score=105.98  Aligned_cols=138  Identities=14%  Similarity=0.142  Sum_probs=90.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--cCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~--~~~~~fDv  178 (257)
                      .++.+|||||||+|..+..+++..+..+|++||+++.+++.+.+....      .+++.++.+|+.+...  ...++||+
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~------~~~v~~~~~d~~~~~~~~~~~~~fD~  129 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE------RNNIIPLLFDASKPWKYSGIVEKVDL  129 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH------CSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc------CCCeEEEEcCCCCchhhcccccceeE
Confidence            356799999999999999988764446999999999987655544321      1468888999876421  12378999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec--CCCCCCCC-hHHHHHHHHHHhhhCCceEEEeecCc
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA--GPAGIFSH-TEVFSCIYNTLRQVFKCGCCALFSSY  253 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~--~~~~~~~~-~~~~~~~~~~l~~~F~~v~~~~~~~~  253 (257)
                      |+++...+        .....+++. +++.|||||.+++..  .+...... .+.+....+.|++.|..+.....+++
T Consensus       130 V~~~~~~~--------~~~~~~l~~-~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~p~  198 (210)
T 1nt2_A          130 IYQDIAQK--------NQIEILKAN-AEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMPY  198 (210)
T ss_dssp             EEECCCST--------THHHHHHHH-HHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTT
T ss_pred             EEEeccCh--------hHHHHHHHH-HHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhhcEEeeeecCCCC
Confidence            99985422        112345788 799999999998763  11110111 23333344446666766666555443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.35  E-value=1.4e-11  Score=112.98  Aligned_cols=135  Identities=21%  Similarity=0.203  Sum_probs=96.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~fD  177 (257)
                      .++++|||+|||+|+++..+++. +..+|++||+++.+++.|++++..++  +.+++++++.+|+.+++...   .++||
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ng--l~~~~v~~~~~D~~~~~~~~~~~~~~fD  295 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHhcCCCCC
Confidence            46689999999999999999986 35699999999999999999988663  10238999999999987642   46899


Q ss_pred             EEEEcCCCCCCCCcc--cC--CchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHH-HHHhhhC
Q 025141          178 VIIGDLADPIEGGPC--YK--LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY-NTLRQVF  242 (257)
Q Consensus       178 vIi~D~~~~~~~~p~--~~--L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~-~~l~~~F  242 (257)
                      +|++|++.... ...  ..  -.-.+++.. +.+.|+|||++++.+.+..  .....+..+. +.+.+..
T Consensus       296 ~Ii~dpP~~~~-~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~~--~~~~~~~~~i~~~~~~~g  361 (396)
T 3c0k_A          296 VIVMDPPKFVE-NKSQLMGACRGYKDINML-AIQLLNEGGILLTFSCSGL--MTSDLFQKIIADAAIDAG  361 (396)
T ss_dssp             EEEECCSSTTT-CSSSSSCCCTHHHHHHHH-HHHTEEEEEEEEEEECCTT--CCHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCC-ChhHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCCc--CCHHHHHHHHHHHHHHcC
Confidence            99999874210 110  00  112467777 6899999999998765542  2333333333 3555553

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.35  E-value=8.9e-12  Score=113.91  Aligned_cols=136  Identities=14%  Similarity=0.089  Sum_probs=98.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fDv  178 (257)
                      +.++|||+|||+|..+..+++.  ..+|++||+++.+++.|++++..++    -++++++.+|+.+++..   ..++||+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~----~~~~~~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNG----LGNVRVLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTT----CTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC----CCCceEEECCHHHHHHHHHhcCCCeeE
Confidence            5679999999999999999986  4799999999999999999988763    23499999999998764   2578999


Q ss_pred             EEEcCCCCCCCCcccCCc-----hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHH-HHHHhhhCCceEEE
Q 025141          179 IIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI-YNTLRQVFKCGCCA  248 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~-~~~l~~~F~~v~~~  248 (257)
                      |++|++.-.. .+ ..+.     ..++++. +.+.|+|||++++.+.+..  .....+... .+.+.+....+...
T Consensus       283 Ii~dpP~~~~-~~-~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~~--~~~~~~~~~i~~~~~~~g~~~~~i  353 (382)
T 1wxx_A          283 VVLDPPAFAK-GK-KDVERAYRAYKEVNLR-AIKLLKEGGILATASCSHH--MTEPLFYAMVAEAAQDAHRLLRVV  353 (382)
T ss_dssp             EEECCCCSCC-ST-TSHHHHHHHHHHHHHH-HHHTEEEEEEEEEEECCTT--SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEECCCCCCC-Ch-hHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCCC--CCHHHHHHHHHHHHHHcCCeEEEE
Confidence            9999874211 11 1111     2467787 6899999999998765542  333333333 34555554444443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.35  E-value=3.7e-12  Score=108.88  Aligned_cols=105  Identities=20%  Similarity=0.142  Sum_probs=82.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++.+...+   ..++++++.+|+.+...  .++||+|+
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~~---~~~~v~~~~~d~~~~~~--~~~fD~V~  108 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELG---VSERVHFIHNDAAGYVA--NEKCDVAA  108 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCCTTCCC--SSCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEECChHhCCc--CCCCCEEE
Confidence            4568999999999999999988653 589999999999999999876432   23589999999877532  57899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-..  .+    -...+++. +++.|||||.+++.
T Consensus       109 ~~~~~~~--~~----~~~~~l~~-~~r~LkpgG~l~~~  139 (256)
T 1nkv_A          109 CVGATWI--AG----GFAGAEEL-LAQSLKPGGIMLIG  139 (256)
T ss_dssp             EESCGGG--TS----SSHHHHHH-HTTSEEEEEEEEEE
T ss_pred             ECCChHh--cC----CHHHHHHH-HHHHcCCCeEEEEe
Confidence            8533211  01    13678898 79999999998874

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.34  E-value=4.8e-12  Score=108.18  Aligned_cols=106  Identities=13%  Similarity=0.081  Sum_probs=84.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|..+..+++..+ .+|+++|+++.+++.+++++...+   ..++++++.+|+.+. ....++||+|+
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v~  119 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKAN---CADRVKGITGSMDNL-PFQNEELDLIW  119 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-SSCTTCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECChhhC-CCCCCCEEEEE
Confidence            4567999999999999999999755 499999999999999999876442   245799999998553 23357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-..       +-...+++. +++.|+|||++++..
T Consensus       120 ~~~~l~~-------~~~~~~l~~-~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          120 SEGAIYN-------IGFERGMNE-WSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EESCSCC-------CCHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             ecChHhh-------cCHHHHHHH-HHHHcCCCcEEEEEE
Confidence            9864322       224578898 799999999998764

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.34  E-value=1.1e-11  Score=109.05  Aligned_cols=111  Identities=16%  Similarity=0.209  Sum_probs=85.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce---eE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY---DV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f---Dv  178 (257)
                      ++.+|||||||+|.++..+++. +..+|+++|+++.+++.|+++....+   ...+++++.+|+.+.+.   ++|   |+
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~---l~~~v~~~~~D~~~~~~---~~f~~~D~  195 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHG---VSDRFFVRKGEFLEPFK---EKFASIEM  195 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTT---CTTSEEEEESSTTGGGG---GGTTTCCE
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECcchhhcc---cccCCCCE
Confidence            4579999999999999999988 56799999999999999999987543   23479999999988664   478   99


Q ss_pred             EEEcCCCC-CC--------CCcccCCc----hHHHHHHHHc-CcCCCCcEEEEecC
Q 025141          179 IIGDLADP-IE--------GGPCYKLY----TKSFYEFVVK-PRLNPEGIFVTQAG  220 (257)
Q Consensus       179 Ii~D~~~~-~~--------~~p~~~L~----t~ef~~~~~~-~~L~pgGil~~~~~  220 (257)
                      |+++++-. ..        ..|...|+    ..++++. +. +.|+|||.+++..+
T Consensus       196 IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~-i~~~~l~pgG~l~~e~~  250 (284)
T 1nv8_A          196 ILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYRE-FFGRYDTSGKIVLMEIG  250 (284)
T ss_dssp             EEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHH-HHHHCCCTTCEEEEECC
T ss_pred             EEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHH-HHHhcCCCCCEEEEEEC
Confidence            99997621 10        01100111    1278999 68 99999999998764

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.34  E-value=2.6e-12  Score=108.51  Aligned_cols=106  Identities=19%  Similarity=0.272  Sum_probs=82.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++..+..+++++|+++.+++.|++.+...      ++++++.+|+.+....  ++||+|+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~~~~--~~fD~v~  114 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN------LKVKYIEADYSKYDFE--EKYDMVV  114 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC------TTEEEEESCTTTCCCC--SCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC------CCEEEEeCchhccCCC--CCceEEE
Confidence            4568999999999999999998754579999999999999999987532      3899999998775322  7899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-..  .+  .....++++. +++.|+|||++++..
T Consensus       115 ~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          115 SALSIHH--LE--DEDKKELYKR-SYSILKESGIFINAD  148 (234)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EeCcccc--CC--HHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            9854221  01  0112358898 799999999998754

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.33  E-value=1.5e-11  Score=112.67  Aligned_cols=128  Identities=19%  Similarity=0.234  Sum_probs=95.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++.+|||+|||+|.++..+++. + .+|++||+|+.+++.|++++..++     .+++++.+|+.+.... .++||+|++
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~-g-~~V~gvDis~~al~~A~~n~~~~~-----~~v~~~~~D~~~~~~~-~~~fD~Ii~  304 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM-G-AEVVGVEDDLASVLSLQKGLEANA-----LKAQALHSDVDEALTE-EARFDIIVT  304 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT-T-CEEEEEESBHHHHHHHHHHHHHTT-----CCCEEEECSTTTTSCT-TCCEEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEcchhhcccc-CCCeEEEEE
Confidence            5679999999999999999986 3 599999999999999999987552     2489999999887542 478999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEE
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCA  248 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~  248 (257)
                      +++-...... ..-...++++. ++++|+|||++++.....   .      .....+++.|..+...
T Consensus       305 npp~~~~~~~-~~~~~~~~l~~-~~~~LkpGG~l~iv~n~~---l------~~~~~l~~~f~~v~~l  360 (381)
T 3dmg_A          305 NPPFHVGGAV-ILDVAQAFVNV-AAARLRPGGVFFLVSNPF---L------KYEPLLEEKFGAFQTL  360 (381)
T ss_dssp             CCCCCTTCSS-CCHHHHHHHHH-HHHHEEEEEEEEEEECTT---S------CHHHHHHHHHSCCEEE
T ss_pred             CCchhhcccc-cHHHHHHHHHH-HHHhcCcCcEEEEEEcCC---C------ChHHHHHHhhccEEEE
Confidence            9764331000 11123578898 799999999999875432   1      2234566667777766

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.33  E-value=1.3e-11  Score=103.93  Aligned_cols=138  Identities=17%  Similarity=0.169  Sum_probs=95.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--hcCCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l--~~~~~~fD  177 (257)
                      .+..+|||+|||+|.++..+++. .+..+|+++|+++.+++.++++....      ++++++.+|+.+..  ....++||
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~D  145 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER------RNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC------TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc------CCCEEEEccCCCcchhhcccCCce
Confidence            35679999999999999999976 33469999999999999998876532      68999999997742  22346899


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCC-CCC--ChHHHHHHHHHHhhhCCceEEEeecCc
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG-IFS--HTEVFSCIYNTLRQVFKCGCCALFSSY  253 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~-~~~--~~~~~~~~~~~l~~~F~~v~~~~~~~~  253 (257)
                      +|++|.+.+.        ....+++. +.+.|+|||.+++...... ...  ........+..+.+.|..+......++
T Consensus       146 ~v~~~~~~~~--------~~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~~~~~~~~~~  215 (227)
T 1g8a_A          146 VIFEDVAQPT--------QAKILIDN-AEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLEPY  215 (227)
T ss_dssp             EEEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTT
T ss_pred             EEEECCCCHh--------HHHHHHHH-HHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhhceeeeEeccCcc
Confidence            9999876321        12355888 7999999998887531110 011  122333344445555877777666544

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.33  E-value=8.8e-11  Score=94.55  Aligned_cols=119  Identities=14%  Similarity=0.094  Sum_probs=92.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||++|||+|..+..+++ + ..+++++|+++.+++.+++++...+    .++++++.+|+.+.+..  ++||+|+
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~--~~~D~i~  105 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAK-R-CKFVYAIDYLDGAIEVTKQNLAKFN----IKNCQIIKGRAEDVLDK--LEFNKAF  105 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHT-T-SSEEEEEECSHHHHHHHHHHHHHTT----CCSEEEEESCHHHHGGG--CCCSEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEECCccccccC--CCCcEEE
Confidence            4567999999999999999998 3 4799999999999999999987542    26899999999885543  6899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGC  246 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~  246 (257)
                      ++.. .   .      ..++++. +++.  |||.+++...      .......+.+.+++..-.+.
T Consensus       106 ~~~~-~---~------~~~~l~~-~~~~--~gG~l~~~~~------~~~~~~~~~~~l~~~g~~~~  152 (183)
T 2yxd_A          106 IGGT-K---N------IEKIIEI-LDKK--KINHIVANTI------VLENAAKIINEFESRGYNVD  152 (183)
T ss_dssp             ECSC-S---C------HHHHHHH-HHHT--TCCEEEEEES------CHHHHHHHHHHHHHTTCEEE
T ss_pred             ECCc-c---c------HHHHHHH-HhhC--CCCEEEEEec------ccccHHHHHHHHHHcCCeEE
Confidence            9865 1   1      2577887 6666  9999988642      34456677777877643333

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.33  E-value=5.8e-12  Score=115.10  Aligned_cols=133  Identities=16%  Similarity=0.172  Sum_probs=94.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      .+.+|||+|||+|.++..+++..+..+|++||+++.+++.+++++..++- -...+++++.+|+.+.+  ..++||+|++
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl-~~~~~v~~~~~D~~~~~--~~~~fD~Ii~  298 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP-EALDRCEFMINNALSGV--EPFRFNAVLC  298 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCG-GGGGGEEEEECSTTTTC--CTTCEEEEEE
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCC-CcCceEEEEechhhccC--CCCCeeEEEE
Confidence            34899999999999999999976567999999999999999999875421 01236888999998754  3468999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEE
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCA  248 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~  248 (257)
                      |++-...... ..-...++++. +++.|+|||++++-....   ..      ....+++.|..+...
T Consensus       299 nppfh~~~~~-~~~~~~~~l~~-~~~~LkpgG~l~iv~n~~---~~------~~~~l~~~fg~~~~~  354 (375)
T 4dcm_A          299 NPPFHQQHAL-TDNVAWEMFHH-ARRCLKINGELYIVANRH---LD------YFHKLKKIFGNCTTI  354 (375)
T ss_dssp             CCCC--------CCHHHHHHHH-HHHHEEEEEEEEEEEETT---SC------HHHHHHHHHSCCEEE
T ss_pred             CCCcccCccc-CHHHHHHHHHH-HHHhCCCCcEEEEEEECC---cC------HHHHHHHhcCCEEEE
Confidence            9863321011 11223578998 799999999998854221   11      124466667666653

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.33  E-value=8.2e-12  Score=108.78  Aligned_cols=125  Identities=19%  Similarity=0.215  Sum_probs=93.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+||++|||+|.++..+++. .+..+|+++|+++.+++.|++++...+   ..++++++.+|+.+.+  ..++||+|
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~~~~~D~V  185 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG---LIERVTIKVRDISEGF--DEKDVDAL  185 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT---CGGGEEEECCCGGGCC--SCCSEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---CCCCEEEEECCHHHcc--cCCccCEE
Confidence            45679999999999999999986 445799999999999999999876432   2358999999998763  23679999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEE
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCA  248 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~  248 (257)
                      ++|++++           .++++. +.+.|+|||++++....      .....++.+.|++. |..+..+
T Consensus       186 ~~~~~~~-----------~~~l~~-~~~~L~pgG~l~~~~~~------~~~~~~~~~~l~~~gf~~~~~~  237 (277)
T 1o54_A          186 FLDVPDP-----------WNYIDK-CWEALKGGGRFATVCPT------TNQVQETLKKLQELPFIRIEVW  237 (277)
T ss_dssp             EECCSCG-----------GGTHHH-HHHHEEEEEEEEEEESS------HHHHHHHHHHHHHSSEEEEEEE
T ss_pred             EECCcCH-----------HHHHHH-HHHHcCCCCEEEEEeCC------HHHHHHHHHHHHHCCCceeEEE
Confidence            9987543           145677 68899999999987521      23445666667654 5544444

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.33  E-value=7.5e-12  Score=103.69  Aligned_cols=102  Identities=14%  Similarity=0.132  Sum_probs=82.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++.+||++|||+|..+..+++..+..+++++|+++.+++.+++++...+    .++++++.+|+.++.  ..++||+|++
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~--~~~~~D~i~~  138 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK----LENIEPVQSRVEEFP--SEPPFDGVIS  138 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEECCTTTSC--CCSCEEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEecchhhCC--ccCCcCEEEE
Confidence            4679999999999999999886455799999999999999999886542    245999999987754  2468999998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +...     .     ...+++. +++.|+|||.+++..+
T Consensus       139 ~~~~-----~-----~~~~l~~-~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          139 RAFA-----S-----LNDMVSW-CHHLPGEQGRFYALKG  166 (207)
T ss_dssp             SCSS-----S-----HHHHHHH-HTTSEEEEEEEEEEES
T ss_pred             eccC-----C-----HHHHHHH-HHHhcCCCcEEEEEeC
Confidence            6431     1     2478888 7999999999998764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.33  E-value=2.1e-11  Score=112.09  Aligned_cols=133  Identities=11%  Similarity=0.021  Sum_probs=92.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++++|||+|||+|..+..+++. +. +|++||+++.+++.|++++..++-   +  .++..+|+++++....++||+|++
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~-ga-~V~avDis~~al~~a~~n~~~ng~---~--~~~~~~D~~~~l~~~~~~fD~Ii~  286 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK-GA-YALAVDKDLEALGVLDQAALRLGL---R--VDIRHGEALPTLRGLEGPFHHVLL  286 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHHTC---C--CEEEESCHHHHHHTCCCCEEEEEE
T ss_pred             CCCeEEEcccchhHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHHhCC---C--CcEEEccHHHHHHHhcCCCCEEEE
Confidence            4789999999999999999985 43 599999999999999999987641   1  356799999998765555999999


Q ss_pred             cCCCCCCCCcccCCc-----hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHH-HHHHHHhhhCCceE
Q 025141          182 DLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFS-CIYNTLRQVFKCGC  246 (257)
Q Consensus       182 D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~-~~~~~l~~~F~~v~  246 (257)
                      |++.-.. .. ..+.     ..++++. +.+.|+|||++++-..++  ....+.+. .+.+.+.+.-..+.
T Consensus       287 dpP~f~~-~~-~~~~~~~~~~~~ll~~-a~~~LkpGG~Lv~~s~s~--~~~~~~f~~~v~~a~~~~g~~~~  352 (393)
T 4dmg_A          287 DPPTLVK-RP-EELPAMKRHLVDLVRE-ALRLLAEEGFLWLSSCSY--HLRLEDLLEVARRAAADLGRRLR  352 (393)
T ss_dssp             CCCCCCS-SG-GGHHHHHHHHHHHHHH-HHHTEEEEEEEEEEECCT--TSCHHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCcCCC-CH-HHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC--CCCHHHHHHHHHHHHHHhCCeEE
Confidence            9864110 11 1111     1467777 689999999998665444  22333333 33344444433333

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.33  E-value=1.3e-11  Score=105.45  Aligned_cols=125  Identities=13%  Similarity=0.126  Sum_probs=94.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+..+||++|||+|.++..+++. .+..+|+++|+++.+++.|++++... +    .++++++.+|+.+. .-..++||+
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g----~~~v~~~~~d~~~~-~~~~~~~D~  169 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ----VENVRFHLGKLEEA-ELEEAAYDG  169 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEESCGGGC-CCCTTCEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC----CCCEEEEECchhhc-CCCCCCcCE
Confidence            45679999999999999999986 44579999999999999999988643 2    36899999998875 112367999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEE
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCA  248 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~  248 (257)
                      |++|++++           .++++. +.+.|+|||.+++...      ......++.+.|++. |..+..+
T Consensus       170 v~~~~~~~-----------~~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~~gf~~~~~~  222 (258)
T 2pwy_A          170 VALDLMEP-----------WKVLEK-AALALKPDRFLVAYLP------NITQVLELVRAAEAHPFRLERVL  222 (258)
T ss_dssp             EEEESSCG-----------GGGHHH-HHHHEEEEEEEEEEES------CHHHHHHHHHHHTTTTEEEEEEE
T ss_pred             EEECCcCH-----------HHHHHH-HHHhCCCCCEEEEEeC------CHHHHHHHHHHHHHCCCceEEEE
Confidence            99986532           145677 6889999999998652      234456777777754 5544443

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.32  E-value=6.6e-12  Score=104.37  Aligned_cols=101  Identities=18%  Similarity=0.211  Sum_probs=81.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++.  ..+|+++|+++.+++.|++++...+    .++++++.+|+.+.... .++||+|+
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~~D~i~  148 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLD----LHNVSTRHGDGWQGWQA-RAPFDAII  148 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCGG-GCCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC----CCceEEEECCcccCCcc-CCCccEEE
Confidence            46789999999999999999987  3699999999999999999987542    34799999999875533 47899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      ++...+.  .+          .. +.+.|+|||++++....
T Consensus       149 ~~~~~~~--~~----------~~-~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          149 VTAAPPE--IP----------TA-LMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             ESSBCSS--CC----------TH-HHHTEEEEEEEEEEECS
T ss_pred             Eccchhh--hh----------HH-HHHhcccCcEEEEEEcC
Confidence            9865332  11          14 57799999999987654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.32  E-value=7e-12  Score=109.25  Aligned_cols=125  Identities=14%  Similarity=0.131  Sum_probs=94.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+..+|||+|||+|..+..+++. .+..+|+++|+++.+++.|++++... +    .++++++.+|+.+.+  ..++||+
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g----~~~v~~~~~d~~~~~--~~~~fD~  182 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD----IGNVRTSRSDIADFI--SDQMYDA  182 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC----CTTEEEECSCTTTCC--CSCCEEE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECchhccC--cCCCccE
Confidence            45679999999999999999886 44579999999999999999988643 2    368999999998743  2468999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCAL  249 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~  249 (257)
                      |++|.+++           .++++. +.+.|+|||++++...      .......+.+.+++. |..+..+.
T Consensus       183 Vi~~~~~~-----------~~~l~~-~~~~LkpgG~l~i~~~------~~~~~~~~~~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          183 VIADIPDP-----------WNHVQK-IASMMKPGSVATFYLP------NFDQSEKTVLSLSASGMHHLETVE  236 (275)
T ss_dssp             EEECCSCG-----------GGSHHH-HHHTEEEEEEEEEEES------SHHHHHHHHHHSGGGTEEEEEEEE
T ss_pred             EEEcCcCH-----------HHHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHHCCCeEEEEEE
Confidence            99976532           245677 6899999999998652      123455666667664 55555443

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.32  E-value=1.3e-11  Score=113.31  Aligned_cols=114  Identities=17%  Similarity=0.157  Sum_probs=88.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fDv  178 (257)
                      ++++||++|||+|..+..+++. +..+|++||+++.+++.|++++..++   .+++++++.+|+.+++..   ..++||+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~---~~~~v~~~~~d~~~~~~~~~~~~~~fD~  292 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNG---VEDRMKFIVGSAFEEMEKLQKKGEKFDI  292 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEECCHHHHHHHHHhhCCCCCE
Confidence            6789999999999999999986 45699999999999999999988663   123899999999998754   2578999


Q ss_pred             EEEcCCCCCCCCcccCCc-----hHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          179 IIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      |++|++.... .. ..+.     ..+++.. +.+.|+|||++++.+.++
T Consensus       293 Vi~dpP~~~~-~~-~~~~~~~~~~~~~l~~-~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          293 VVLDPPAFVQ-HE-KDLKAGLRAYFNVNFA-GLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             EEECCCCSCS-SG-GGHHHHHHHHHHHHHH-HHTTEEEEEEEEEEECCT
T ss_pred             EEECCCCCCC-CH-HHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEECCC
Confidence            9999874211 11 1111     2467787 689999999888776544

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.32  E-value=1.3e-11  Score=104.89  Aligned_cols=125  Identities=12%  Similarity=0.079  Sum_probs=94.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||++|||+|.++..+++.  ..+|+++|+++..++.|++++...+   .+++++++.+|+.+... ..+.||+|+
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~-~~~~~D~v~  163 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFN---LGKNVKFFNVDFKDAEV-PEGIFHAAF  163 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTT---CCTTEEEECSCTTTSCC-CTTCBSEEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC---CCCcEEEEEcChhhccc-CCCcccEEE
Confidence            35679999999999999999987  4699999999999999999876432   23689999999887541 236799999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCAL  249 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~  249 (257)
                      ++++++           .++++. +.+.|+|||.+++...      ......++.+.+++.|..+..+.
T Consensus       164 ~~~~~~-----------~~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~~f~~~~~~~  214 (248)
T 2yvl_A          164 VDVREP-----------WHYLEK-VHKSLMEGAPVGFLLP------TANQVIKLLESIENYFGNLEVVE  214 (248)
T ss_dssp             ECSSCG-----------GGGHHH-HHHHBCTTCEEEEEES------SHHHHHHHHHHSTTTEEEEEEEE
T ss_pred             ECCcCH-----------HHHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhhCCcceEEE
Confidence            986532           244677 6889999999998752      23445566666665566555443

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.31  E-value=1.6e-11  Score=105.97  Aligned_cols=129  Identities=15%  Similarity=0.110  Sum_probs=98.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++||++|||+|.++..+++.. . +|+++|+|+.+++.+++++..++    .. ++++.+|+.+.+.  .++||+|+
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g-~-~v~gvDi~~~~v~~a~~n~~~~~----~~-v~~~~~d~~~~~~--~~~fD~Vv  189 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLG-G-KALGVDIDPMVLPQAEANAKRNG----VR-PRFLEGSLEAALP--FGPFDLLV  189 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-C-EEEEEESCGGGHHHHHHHHHHTT----CC-CEEEESCHHHHGG--GCCEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhC-C-eEEEEECCHHHHHHHHHHHHHcC----Cc-EEEEECChhhcCc--CCCCCEEE
Confidence            467899999999999999988863 3 99999999999999999987653    12 8999999988653  36899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEeecCcc
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALFSSYS  254 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~~~~  254 (257)
                      ++...+       .  ...+++. +++.|+|||.+++....      ......+.+.+++. |..+.......|.
T Consensus       190 ~n~~~~-------~--~~~~l~~-~~~~LkpgG~lils~~~------~~~~~~v~~~l~~~Gf~~~~~~~~~~W~  248 (254)
T 2nxc_A          190 ANLYAE-------L--HAALAPR-YREALVPGGRALLTGIL------KDRAPLVREAMAGAGFRPLEEAAEGEWV  248 (254)
T ss_dssp             EECCHH-------H--HHHHHHH-HHHHEEEEEEEEEEEEE------GGGHHHHHHHHHHTTCEEEEEEEETTEE
T ss_pred             ECCcHH-------H--HHHHHHH-HHHHcCCCCEEEEEeec------cCCHHHHHHHHHHCCCEEEEEeccCCeE
Confidence            875321       1  2577888 79999999999885321      12245666777776 8777777767764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.31  E-value=1.5e-11  Score=104.32  Aligned_cols=103  Identities=17%  Similarity=0.162  Sum_probs=80.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--cCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~--~~~~~fDv  178 (257)
                      .+..+|||||||+|.++..+++..+..+|++||+++.+++.++++...      .++++++.+|+.+...  ...++||+
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~D~  146 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE------RENIIPILGDANKPQEYANIVEKVDV  146 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT------CTTEEEEECCTTCGGGGTTTSCCEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc------CCCeEEEECCCCCcccccccCccEEE
Confidence            356799999999999999999874457999999999999999987542      2689999999876221  11268999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+.+.+++.        ....+++. +.+.|+|||++++.
T Consensus       147 v~~~~~~~~--------~~~~~l~~-~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          147 IYEDVAQPN--------QAEILIKN-AKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EEEecCChh--------HHHHHHHH-HHHhCCCCcEEEEE
Confidence            998764321        13567888 79999999998873

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.31  E-value=4.6e-12  Score=105.77  Aligned_cols=143  Identities=15%  Similarity=0.071  Sum_probs=100.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+||+||||+|..+..+++.. +..+|+++|+++.+++.+++.+...+    .++++++.+|+.+. ....++||+|
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~-~~~~~~fD~v  110 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG----LKNVEVLKSEENKI-PLPDNTVDFI  110 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEECBTTBC-SSCSSCEEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEecccccC-CCCCCCeeEE
Confidence            456799999999999999998863 44699999999999999999886542    34899999998664 2335789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCC-CC-----CChHHHHHHHHHHhhh-CCceEEEeecC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG-IF-----SHTEVFSCIYNTLRQV-FKCGCCALFSS  252 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~-~~-----~~~~~~~~~~~~l~~~-F~~v~~~~~~~  252 (257)
                      ++...-..  .+    ....+++. +++.|+|||.+++..-.+. ..     ...-...++.+.+++. |..+.......
T Consensus       111 ~~~~~l~~--~~----~~~~~l~~-~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  183 (219)
T 3dh0_A          111 FMAFTFHE--LS----EPLKFLEE-LKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGK  183 (219)
T ss_dssp             EEESCGGG--CS----SHHHHHHH-HHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETT
T ss_pred             Eeehhhhh--cC----CHHHHHHH-HHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCC
Confidence            98754221  11    13578898 7999999999887531110 00     0011234566667766 77777666554


Q ss_pred             ccc
Q 025141          253 YSF  255 (257)
Q Consensus       253 ~~~  255 (257)
                      ..|
T Consensus       184 ~~~  186 (219)
T 3dh0_A          184 YCF  186 (219)
T ss_dssp             TEE
T ss_pred             ceE
Confidence            433

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.31  E-value=6e-12  Score=105.39  Aligned_cols=106  Identities=20%  Similarity=0.267  Sum_probs=81.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +.+.+||+||||+|..+..+++..+  +++++|+++.+++.|++++...     .++++++.+|+.+. ....++||+|+
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~-~~~~~~~D~v~  108 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR-----ESNVEFIVGDARKL-SFEDKTFDYVI  108 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCTTSC-CSCTTCEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-----CCCceEEECchhcC-CCCCCcEEEEE
Confidence            4478999999999999999988643  9999999999999999987654     26899999998763 22346899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-... ..   .-..++++. +++.|+|||.+++..
T Consensus       109 ~~~~~~~~-~~---~~~~~~l~~-~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A          109 FIDSIVHF-EP---LELNQVFKE-VRRVLKPSGKFIMYF  142 (227)
T ss_dssp             EESCGGGC-CH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcCchHhC-CH---HHHHHHHHH-HHHHcCCCcEEEEEe
Confidence            88541110 10   112578888 799999999998753

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.31  E-value=6.4e-12  Score=107.97  Aligned_cols=104  Identities=18%  Similarity=0.265  Sum_probs=81.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|.++..+++..  .+|+++|+++.+++.|++.+...+    .++++++.+|+.+. ...+++||+|+
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~l-~~~~~~fD~V~  108 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNG----HQQVEYVQGDAEQM-PFTDERFHIVT  108 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCC-CC-CSCTTCEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEecHHhC-CCCCCCEEEEE
Confidence            467899999999999999998864  499999999999999999876432    35899999998763 33457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-.+...      ...++++ ++++|+|||.+++.
T Consensus       109 ~~~~l~~~~d------~~~~l~~-~~r~LkpgG~l~~~  139 (260)
T 1vl5_A          109 CRIAAHHFPN------PASFVSE-AYRVLKKGGQLLLV  139 (260)
T ss_dssp             EESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EhhhhHhcCC------HHHHHHH-HHHHcCCCCEEEEE
Confidence            8854322111      2478898 79999999999874

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.30  E-value=2.9e-11  Score=105.59  Aligned_cols=116  Identities=16%  Similarity=0.085  Sum_probs=87.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCce
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~f  176 (257)
                      .+..+|||+|||+|+.+..+++. ++..+|+++|+++..++.+++++...+    -++++++.+|+.++...   ..++|
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~~f  157 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG----VLNTIIINADMRKYKDYLLKNEIFF  157 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCHHHHHHHHHHTTCCE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC----CCcEEEEeCChHhcchhhhhccccC
Confidence            45679999999999999998875 333799999999999999999987542    24899999999987642   25689


Q ss_pred             eEEEEcCCCCCCCCcc-------------cCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          177 DVIIGDLADPIEGGPC-------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~-------------~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      |+|++|++-... +..             ..-...++++. +.+.|||||.++....+.
T Consensus       158 D~Vl~d~Pcs~~-g~~~~~p~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          158 DKILLDAPCSGN-IIKDKNRNVSEEDIKYCSLRQKELIDI-GIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             EEEEEEECCC-------------HHHHTGGGTCHHHHHHH-HHHHEEEEEEEEEEESCC
T ss_pred             CEEEEcCCCCCC-cccccCCCCCHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEEECCC
Confidence            999999763210 100             00123678888 789999999998876443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.30  E-value=2.8e-12  Score=112.68  Aligned_cols=102  Identities=18%  Similarity=0.099  Sum_probs=84.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.++|||+|||+|.++..++++. .++|+++|+||..++.++++...++   -..+++++.+|++++..  .+.||.|+
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~---v~~~v~~~~~D~~~~~~--~~~~D~Vi  197 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNK---VEDRMSAYNMDNRDFPG--ENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCcHHHhcc--ccCCCEEE
Confidence            567899999999999999998874 4699999999999999999998775   35689999999998864  46899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++++..          +.+|+.. +.+.|+|||++.++.
T Consensus       198 ~~~p~~----------~~~~l~~-a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          198 MGYVVR----------THEFIPK-ALSIAKDGAIIHYHN  225 (278)
T ss_dssp             ECCCSS----------GGGGHHH-HHHHEEEEEEEEEEE
T ss_pred             ECCCCc----------HHHHHHH-HHHHcCCCCEEEEEe
Confidence            997521          2356777 678899999987653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.30  E-value=2.2e-11  Score=101.65  Aligned_cols=102  Identities=17%  Similarity=0.071  Sum_probs=79.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++. + .+++++|+++.+++.+++.++        ++++++.+|+.+... . ++||+|+
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~d~~~~~~-~-~~fD~v~  111 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLA-G-RTVYGIEPSREMRMIAKEKLP--------KEFSITEGDFLSFEV-P-TSIDTIV  111 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHSC--------TTCCEESCCSSSCCC-C-SCCSEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHhCC--------CceEEEeCChhhcCC-C-CCeEEEE
Confidence            36789999999999999999986 3 599999999999999998754        478999999877532 2 7899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-..  .+  ......+++. +++.|+|||.+++..
T Consensus       112 ~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          112 STYAFHH--LT--DDEKNVAIAK-YSQLLNKGGKIVFAD  145 (220)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             ECcchhc--CC--hHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence            9854221  11  1112348888 799999999998864

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.30  E-value=9.9e-12  Score=109.22  Aligned_cols=107  Identities=12%  Similarity=0.134  Sum_probs=84.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-----~~  174 (257)
                      .++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++.+....  ...++++++.+|+.+.-...     .+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~  112 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP--DTYKNVSFKISSSDDFKFLGADSVDKQ  112 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC---CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc--CCCCceEEEEcCHHhCCccccccccCC
Confidence            467899999999999999999642 45799999999999999999876431  12579999999997753222     26


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +||+|++...-++       +--..+++. ++++|+|||.+++
T Consensus       113 ~fD~V~~~~~l~~-------~~~~~~l~~-~~~~LkpgG~l~i  147 (299)
T 3g5t_A          113 KIDMITAVECAHW-------FDFEKFQRS-AYANLRKDGTIAI  147 (299)
T ss_dssp             CEEEEEEESCGGG-------SCHHHHHHH-HHHHEEEEEEEEE
T ss_pred             CeeEEeHhhHHHH-------hCHHHHHHH-HHHhcCCCcEEEE
Confidence            8999999754222       234678998 7999999999987

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.29  E-value=2.4e-11  Score=110.76  Aligned_cols=105  Identities=18%  Similarity=0.237  Sum_probs=82.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi  180 (257)
                      ++++||||| |+|.++..+++..+..+|++||+|+.+++.|++++...+  +  .+++++.+|+.+.+.. ..++||+|+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g--~--~~v~~~~~D~~~~l~~~~~~~fD~Vi  246 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG--Y--EDIEIFTFDLRKPLPDYALHKFDTFI  246 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT--C--CCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--C--CCEEEEEChhhhhchhhccCCccEEE
Confidence            468999999 999999999886444699999999999999999987553  1  2899999999885543 346899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCc-EEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG-il~~~~  219 (257)
                      +|++-.    +. .  ...+++. +.+.|+||| ++++.+
T Consensus       247 ~~~p~~----~~-~--~~~~l~~-~~~~LkpgG~~~~~~~  278 (373)
T 2qm3_A          247 TDPPET----LE-A--IRAFVGR-GIATLKGPRCAGYFGI  278 (373)
T ss_dssp             ECCCSS----HH-H--HHHHHHH-HHHTBCSTTCEEEEEE
T ss_pred             ECCCCc----hH-H--HHHHHHH-HHHHcccCCeEEEEEE
Confidence            997532    11 2  3788999 799999999 434443

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.29  E-value=5.9e-12  Score=108.98  Aligned_cols=107  Identities=15%  Similarity=0.149  Sum_probs=85.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|..+..+++..+..+|+++|+++.+++.+++.+...+    .++++++.+|+.+.. ...++||+|+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~fD~v~  110 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG----IKNVKFLQANIFSLP-FEDSSFDHIF  110 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGCC-SCTTCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEcccccCC-CCCCCeeEEE
Confidence            56789999999999999999987555799999999999999999886542    358999999987642 3457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-.....      ...+++. +++.|+|||++++..
T Consensus       111 ~~~~l~~~~~------~~~~l~~-~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          111 VCFVLEHLQS------PEEALKS-LKKVLKPGGTITVIE  142 (276)
T ss_dssp             EESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EechhhhcCC------HHHHHHH-HHHHcCCCcEEEEEE
Confidence            8764322101      2478898 799999999998753

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.29  E-value=1.9e-11  Score=109.41  Aligned_cols=122  Identities=12%  Similarity=0.215  Sum_probs=87.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhh-------ccCCCCCCCeEEEEcchHHHHhc-
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVV-------NKEAFSDPRLELVINDARAELES-  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~-------~~~~~~~~rv~i~~~Da~~~l~~-  171 (257)
                      .++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++..       +...-..++++++.+|+.+.+.. 
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~  183 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  183 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence            45689999999999999999886 3447999999999999999998763       11000136899999999876432 


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025141          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (257)
Q Consensus       172 ~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~  240 (257)
                      ..++||+|++|.++++           .+++. +.+.|+|||.+++...      .........+.+++
T Consensus       184 ~~~~fD~V~~~~~~~~-----------~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~  234 (336)
T 2b25_A          184 KSLTFDAVALDMLNPH-----------VTLPV-FYPHLKHGGVCAVYVV------NITQVIELLDGIRT  234 (336)
T ss_dssp             ----EEEEEECSSSTT-----------TTHHH-HGGGEEEEEEEEEEES------SHHHHHHHHHHHHH
T ss_pred             CCCCeeEEEECCCCHH-----------HHHHH-HHHhcCCCcEEEEEeC------CHHHHHHHHHHHHh
Confidence            2357999999876543           14677 7999999999997642      23445566666664

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.29  E-value=3.2e-11  Score=103.31  Aligned_cols=137  Identities=15%  Similarity=0.132  Sum_probs=99.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD  177 (257)
                      .+..+||+||||+|.++..+++. .+..+|++||+++++++.+++...      ..+++..+.+|+...-..  ..+.+|
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~------~~~ni~~V~~d~~~p~~~~~~~~~vD  149 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR------DRRNIFPILGDARFPEKYRHLVEGVD  149 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST------TCTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH------hhcCeeEEEEeccCccccccccceEE
Confidence            45689999999999999999986 345799999999999999988754      236899999998765332  347899


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCC--C-CCChHHHHHHHHHHhhh-CCceEEEeecC
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG--I-FSHTEVFSCIYNTLRQV-FKCGCCALFSS  252 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~--~-~~~~~~~~~~~~~l~~~-F~~v~~~~~~~  252 (257)
                      +|++|.+.++        ....+++. +++.|||||.+++-.....  . ......+.+..+.|++. |.-+......+
T Consensus       150 vVf~d~~~~~--------~~~~~l~~-~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~p  219 (233)
T 4df3_A          150 GLYADVAQPE--------QAAIVVRN-ARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDP  219 (233)
T ss_dssp             EEEECCCCTT--------HHHHHHHH-HHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             EEEEeccCCh--------hHHHHHHH-HHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence            9999976543        13567888 7999999999886421100  0 01234566777778765 76666555444

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.29  E-value=1.5e-11  Score=106.21  Aligned_cols=107  Identities=15%  Similarity=0.115  Sum_probs=83.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++..+ .+|+++|+++.+++.+++.+...+   ..++++++.+|+.+. ...+++||+|+
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v~  134 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATARD-VRVTGISISRPQVNQANARATAAG---LANRVTFSYADAMDL-PFEDASFDAVW  134 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHSC-CEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-CSCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEECccccC-CCCCCCccEEE
Confidence            4568999999999999999988644 699999999999999999876432   245899999998763 23357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-..  .+    -...+++. +++.|+|||.+++..
T Consensus       135 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          135 ALESLHH--MP----DRGRALRE-MARVLRPGGTVAIAD  166 (273)
T ss_dssp             EESCTTT--SS----CHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             Eechhhh--CC----CHHHHHHH-HHHHcCCCeEEEEEE
Confidence            8654222  11    12578898 799999999988754

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.29  E-value=6.7e-12  Score=104.66  Aligned_cols=132  Identities=11%  Similarity=0.054  Sum_probs=91.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++||+||||+|..+..+++..  .+|+++|+++.+++.+++++..      .++++++.+|+.+..  ..++||+|+
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~--~~~~fD~v~  119 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKR------WSHISWAATDILQFS--TAELFDLIV  119 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTT------CSSEEEEECCTTTCC--CSCCEEEEE
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhccc------CCCeEEEEcchhhCC--CCCCccEEE
Confidence            446799999999999999998863  5999999999999999998753      248999999988765  457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCC---CCCChHHHHHHHHHHhhhCCceE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG---IFSHTEVFSCIYNTLRQVFKCGC  246 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~---~~~~~~~~~~~~~~l~~~F~~v~  246 (257)
                      +...-.....+   -.-..+++. +++.|+|||++++....+.   .|........+.+.+.+.+..+.
T Consensus       120 ~~~~l~~~~~~---~~~~~~l~~-~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  184 (216)
T 3ofk_A          120 VAEVLYYLEDM---TQMRTAIDN-MVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEALTEVE  184 (216)
T ss_dssp             EESCGGGSSSH---HHHHHHHHH-HHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHHHSEEEE
T ss_pred             EccHHHhCCCH---HHHHHHHHH-HHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHhhccceE
Confidence            97542110011   001467888 7999999999998431100   01111223345566666665543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.28  E-value=1.2e-11  Score=107.05  Aligned_cols=109  Identities=12%  Similarity=-0.013  Sum_probs=79.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-------c-CC-----CCCCCeEEEEcchHH
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-------K-EA-----FSDPRLELVINDARA  167 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-------~-~~-----~~~~rv~i~~~Da~~  167 (257)
                      .++.+||++|||+|..+..+++. + .+|++||+++.+++.|++.....       . ..     -..++++++.+|+.+
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~-G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR-G-HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT-T-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC-C-CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            35689999999999999999986 4 48999999999999998765320       0 00     023689999999988


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      .-....++||+|+....-..  -+.  -....+++. ++++|||||+++
T Consensus       145 l~~~~~~~FD~V~~~~~l~~--l~~--~~~~~~l~~-~~~~LkpGG~l~  188 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVA--INP--GDHDRYADI-ILSLLRKEFQYL  188 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTT--SCG--GGHHHHHHH-HHHTEEEEEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhh--CCH--HHHHHHHHH-HHHHcCCCeEEE
Confidence            64332378999997643211  111  123468888 799999999985

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.28  E-value=8.1e-12  Score=109.94  Aligned_cols=112  Identities=17%  Similarity=0.228  Sum_probs=81.4

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-----------------------------
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-----------------------------  152 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-----------------------------  152 (257)
                      ++++|||||||+|.++..+++..+..+|++||+|+.+++.|++++......                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            578999999999999999998755579999999999999999986422100                             


Q ss_pred             -------------------------CCCCCeEEEEcchHHH----HhcCCCceeEEEEcCCCCCCCCcccCC-----chH
Q 025141          153 -------------------------FSDPRLELVINDARAE----LESRKESYDVIIGDLADPIEGGPCYKL-----YTK  198 (257)
Q Consensus       153 -------------------------~~~~rv~i~~~Da~~~----l~~~~~~fDvIi~D~~~~~~~~p~~~L-----~t~  198 (257)
                                               --..+++++.+|....    +....++||+|++.....+     .+|     ...
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~-----ihl~~~~~~~~  200 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKW-----VHLNWGDEGLK  200 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHH-----HHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHH-----hhhcCCHHHHH
Confidence                                     0014899999997632    2224578999998753211     011     235


Q ss_pred             HHHHHHHcCcCCCCcEEEEec
Q 025141          199 SFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       199 ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .+++. ++++|+|||++++..
T Consensus       201 ~~l~~-~~~~LkpGG~lil~~  220 (292)
T 3g07_A          201 RMFRR-IYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHH-HHHHEEEEEEEEEEC
T ss_pred             HHHHH-HHHHhCCCcEEEEec
Confidence            78898 799999999999863

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.27  E-value=3.8e-12  Score=108.95  Aligned_cols=99  Identities=18%  Similarity=0.130  Sum_probs=77.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhcCC-C
Q 025141          102 NPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-E  174 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~~~-~  174 (257)
                      ++++||+||||+|..+..+++.    .+..+|++||+++.+++.|+.   .      .++++++.+|+.+.  +.... .
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---~------~~~v~~~~gD~~~~~~l~~~~~~  151 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---D------MENITLHQGDCSDLTTFEHLREM  151 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---G------CTTEEEEECCSSCSGGGGGGSSS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---c------CCceEEEECcchhHHHHHhhccC
Confidence            4679999999999999998885    345799999999999988872   1      36899999999875  43323 3


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcC-cCCCCcEEEEec
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA  219 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGil~~~~  219 (257)
                      +||+|++|....         ....+++. +.+ .|+|||++++..
T Consensus       152 ~fD~I~~d~~~~---------~~~~~l~~-~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          152 AHPLIFIDNAHA---------NTFNIMKW-AVDHLLEEGDYFIIED  187 (236)
T ss_dssp             CSSEEEEESSCS---------SHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred             CCCEEEECCchH---------hHHHHHHH-HHHhhCCCCCEEEEEe
Confidence            799999987521         13567888 686 999999999853

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.27  E-value=4e-11  Score=102.01  Aligned_cols=105  Identities=18%  Similarity=0.197  Sum_probs=82.2

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ..++.+||+||||+|..+..+++..  .+|+++|+++.+++.+++.+...+    .++++++.+|+.+. ...+++||+|
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~-~~~~~~fD~v   91 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG----VENVRFQQGTAESL-PFPDDSFDII   91 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT----CCSEEEEECBTTBC-CSCTTCEEEE
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCCeEEEecccccC-CCCCCcEEEE
Confidence            3567899999999999999998864  499999999999999999876442    35899999998653 3345789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++...-...  +    -...+++. ++++|+|||.+++.
T Consensus        92 ~~~~~l~~~--~----~~~~~l~~-~~~~LkpgG~l~~~  123 (239)
T 1xxl_A           92 TCRYAAHHF--S----DVRKAVRE-VARVLKQDGRFLLV  123 (239)
T ss_dssp             EEESCGGGC--S----CHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EECCchhhc--c----CHHHHHHH-HHHHcCCCcEEEEE
Confidence            988542111  1    12578888 79999999998875

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.27  E-value=3.8e-11  Score=112.47  Aligned_cols=138  Identities=12%  Similarity=0.048  Sum_probs=98.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+|||+|||+|+.+..+++.. +..+|+++|+++..++.+++++...+    -. ++++.+|+.++.....++||+|
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G----~~-v~~~~~Da~~l~~~~~~~FD~I  174 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG----AP-LAVTQAPPRALAEAFGTYFHRV  174 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC----CC-CEEECSCHHHHHHHHCSCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----Ce-EEEEECCHHHhhhhccccCCEE
Confidence            456899999999999999998753 33699999999999999999987553    23 8999999998765446789999


Q ss_pred             EEcCCCCCC----CCcccC-C-----------chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q 025141          180 IGDLADPIE----GGPCYK-L-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (257)
Q Consensus       180 i~D~~~~~~----~~p~~~-L-----------~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~  243 (257)
                      ++|++-...    ..|... .           ...++++. +.+.|+|||+++..+.+.   . ++..+..++.+.+.+|
T Consensus       175 l~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvysTCs~---~-~eEne~vv~~~l~~~~  249 (464)
T 3m6w_A          175 LLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQ-ASRLLGPGGVLVYSTCTF---A-PEENEGVVAHFLKAHP  249 (464)
T ss_dssp             EEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHH-HHTTEEEEEEEEEEESCC---C-GGGTHHHHHHHHHHCT
T ss_pred             EECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeccC---c-hhcCHHHHHHHHHHCC
Confidence            999873110    012100 0           12678888 799999999998765433   2 2333455555555566


Q ss_pred             ceEEE
Q 025141          244 CGCCA  248 (257)
Q Consensus       244 ~v~~~  248 (257)
                      .....
T Consensus       250 ~~~l~  254 (464)
T 3m6w_A          250 EFRLE  254 (464)
T ss_dssp             TEEEE
T ss_pred             CcEEE
Confidence            54443

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.27  E-value=1.9e-11  Score=100.16  Aligned_cols=104  Identities=13%  Similarity=0.110  Sum_probs=81.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++. + .+++++|+++.+++.+++.+...+    .++++++.+|+.+.-.  .++||+|+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~--~~~~D~v~  102 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAAN-G-YDVDAWDKNAMSIANVERIKSIEN----LDNLHTRVVDLNNLTF--DRQYDFIL  102 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEECCGGGCCC--CCCEEEEE
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHhCC----CCCcEEEEcchhhCCC--CCCceEEE
Confidence            45679999999999999999986 3 599999999999999999876442    2579999999877532  67899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +...-... .+   -....+++. +++.|+|||.+++
T Consensus       103 ~~~~l~~~-~~---~~~~~~l~~-~~~~L~~gG~l~~  134 (199)
T 2xvm_A          103 STVVLMFL-EA---KTIPGLIAN-MQRCTKPGGYNLI  134 (199)
T ss_dssp             EESCGGGS-CG---GGHHHHHHH-HHHTEEEEEEEEE
T ss_pred             EcchhhhC-CH---HHHHHHHHH-HHHhcCCCeEEEE
Confidence            87642210 11   123578888 7999999998765

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.26  E-value=1.2e-11  Score=104.44  Aligned_cols=100  Identities=13%  Similarity=0.162  Sum_probs=79.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|..+..+++..  .+|+++|+++.+++.|++.+.       . +++++.+|+.+.  ..+++||+|+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~-------~-~v~~~~~d~~~~--~~~~~fD~v~  108 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK-------D-GITYIHSRFEDA--QLPRRYDNIV  108 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC-------S-CEEEEESCGGGC--CCSSCEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhh-------C-CeEEEEccHHHc--CcCCcccEEE
Confidence            456789999999999999998863  389999999999999998753       1 799999999876  3457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHc-CcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVK-PRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~-~~L~pgGil~~~~  219 (257)
                      +...-..  .+    -...++++ ++ ++|+|||.+++..
T Consensus       109 ~~~~l~~--~~----~~~~~l~~-~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A          109 LTHVLEH--ID----DPVALLKR-INDDWLAEGGRLFLVC  141 (250)
T ss_dssp             EESCGGG--CS----SHHHHHHH-HHHTTEEEEEEEEEEE
T ss_pred             EhhHHHh--hc----CHHHHHHH-HHHHhcCCCCEEEEEc
Confidence            8754211  11    12578899 79 9999999998865

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.26  E-value=8.4e-12  Score=106.67  Aligned_cols=101  Identities=14%  Similarity=0.157  Sum_probs=81.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++..+..+++++|+++.+++.+++.         .++++++.+|+.+..  ..++||+|+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~---------~~~~~~~~~d~~~~~--~~~~fD~v~  100 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---------LPNTNFGKADLATWK--PAQKADLLY  100 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH---------STTSEEEECCTTTCC--CSSCEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---------CCCcEEEECChhhcC--ccCCcCEEE
Confidence            456899999999999999998864346899999999999999986         257899999987754  457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-.+.  +    -...+++. +++.|+|||.+++..
T Consensus       101 ~~~~l~~~--~----~~~~~l~~-~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          101 ANAVFQWV--P----DHLAVLSQ-LMDQLESGGVLAVQM  132 (259)
T ss_dssp             EESCGGGS--T----THHHHHHH-HGGGEEEEEEEEEEE
T ss_pred             EeCchhhC--C----CHHHHHHH-HHHhcCCCeEEEEEe
Confidence            97643221  1    13578898 799999999999875

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.26  E-value=1.1e-11  Score=108.43  Aligned_cols=105  Identities=14%  Similarity=0.089  Sum_probs=83.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+||+||||+|..+..+++..+ ..+|+++|+++.+++.|++.+...     .++++++.+|+.++..  .++||+|
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~~~~--~~~fD~v   93 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-----PYDSEFLEGDATEIEL--NDKYDIA   93 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-----SSEEEEEESCTTTCCC--SSCEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-----CCceEEEEcchhhcCc--CCCeeEE
Confidence            4678999999999999999998643 479999999999999999987643     2489999999987432  4689999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++...-..  .+    -...+++. +++.|+|||.+++..
T Consensus        94 ~~~~~l~~--~~----~~~~~l~~-~~~~LkpgG~l~~~~  126 (284)
T 3gu3_A           94 ICHAFLLH--MT----TPETMLQK-MIHSVKKGGKIICFE  126 (284)
T ss_dssp             EEESCGGG--CS----SHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EECChhhc--CC----CHHHHHHH-HHHHcCCCCEEEEEe
Confidence            99865222  11    12578898 799999999998754

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.26  E-value=4.9e-12  Score=105.53  Aligned_cols=107  Identities=11%  Similarity=0.041  Sum_probs=76.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC--------CCCCCCeEEEEcchHHHHhcC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE--------AFSDPRLELVINDARAELESR  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~--------~~~~~rv~i~~~Da~~~l~~~  172 (257)
                      +++.+|||+|||+|..+..+++. + .+|++||+++.+++.|++.......        .+..++++++.+|+.+.-...
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~-g-~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~   98 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQ-G-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   98 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH-C-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHC-C-CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence            56789999999999999999986 3 4899999999999999987542100        001368999999987643211


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcE
Q 025141          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI  214 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGi  214 (257)
                      .++||+|+....-..  -+.  -....++++ ++++|||||.
T Consensus        99 ~~~fD~v~~~~~l~~--l~~--~~~~~~l~~-~~r~LkpgG~  135 (203)
T 1pjz_A           99 IGHCAAFYDRAAMIA--LPA--DMRERYVQH-LEALMPQACS  135 (203)
T ss_dssp             HHSEEEEEEESCGGG--SCH--HHHHHHHHH-HHHHSCSEEE
T ss_pred             CCCEEEEEECcchhh--CCH--HHHHHHHHH-HHHHcCCCcE
Confidence            157999997543111  110  112357888 7999999997

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.26  E-value=1.6e-11  Score=101.84  Aligned_cols=141  Identities=11%  Similarity=0.025  Sum_probs=97.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +.+.+|||||||+|.++..+....+..+++++|+|+.+++++++++...+   ...++++  .|....  ..+++||+|+
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g---~~~~v~~--~d~~~~--~~~~~~DvVL  120 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK---TTIKYRF--LNKESD--VYKGTYDVVF  120 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC---CSSEEEE--ECCHHH--HTTSEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCccEEE--eccccc--CCCCCcChhh
Confidence            56889999999999999999886555699999999999999999987653   1124554  666554  3468899999


Q ss_pred             EcCCCCCCCCcccCCchH--HHHHHHHcCcCCCCcEEEEec----CCCCCCCChHHHHHHHHHHhhhCCceEEEeecCcc
Q 025141          181 GDLADPIEGGPCYKLYTK--SFYEFVVKPRLNPEGIFVTQA----GPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYS  254 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~--ef~~~~~~~~L~pgGil~~~~----~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~  254 (257)
                      .-..-|        +...  ..... +.+.|+|||+++..-    +.+...........+.+.+.+-+..+.-+.+++..
T Consensus       121 a~k~LH--------lL~~~~~al~~-v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~nEl  191 (200)
T 3fzg_A          121 LLKMLP--------VLKQQDVNILD-FLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIGNEL  191 (200)
T ss_dssp             EETCHH--------HHHHTTCCHHH-HHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEETTEE
T ss_pred             HhhHHH--------hhhhhHHHHHH-HHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeCceE
Confidence            865421        1111  11225 588999999998532    11111122233445555667778888888888888


Q ss_pred             ccC
Q 025141          255 FFC  257 (257)
Q Consensus       255 ~~~  257 (257)
                      ||+
T Consensus       192 ~y~  194 (200)
T 3fzg_A          192 VYI  194 (200)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.26  E-value=5.5e-11  Score=103.15  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=94.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .++.+||++|||+|.++..+++. .+..+|+++|+++.+++.|++++... +.  ..++++++.+|+.+.. ...+.||+
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~--~~~~v~~~~~d~~~~~-~~~~~~D~  174 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ--PPDNWRLVVSDLADSE-LPDGSVDR  174 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS--CCTTEEEECSCGGGCC-CCTTCEEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--CCCcEEEEECchHhcC-CCCCceeE
Confidence            45679999999999999999884 33469999999999999999987643 10  1368999999987752 22467999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh--hCCceEEE
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ--VFKCGCCA  248 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~--~F~~v~~~  248 (257)
                      |+++.++++           ++++. +.+.|+|||.+++...      ....+.++...+++  -|.....+
T Consensus       175 v~~~~~~~~-----------~~l~~-~~~~L~pgG~l~~~~~------~~~~~~~~~~~l~~~~~f~~~~~~  228 (280)
T 1i9g_A          175 AVLDMLAPW-----------EVLDA-VSRLLVAGGVLMVYVA------TVTQLSRIVEALRAKQCWTEPRAW  228 (280)
T ss_dssp             EEEESSCGG-----------GGHHH-HHHHEEEEEEEEEEES------SHHHHHHHHHHHHHHSSBCCCEEE
T ss_pred             EEECCcCHH-----------HHHHH-HHHhCCCCCEEEEEeC------CHHHHHHHHHHHHhcCCcCCcEEE
Confidence            999875432           45677 6889999999998752      23455677777775  35555444

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.25  E-value=3.9e-11  Score=101.89  Aligned_cols=100  Identities=15%  Similarity=0.189  Sum_probs=79.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvI  179 (257)
                      +++++||+||||+|..+..+++. + .+|+++|+++.+++.+++.            ++++.+|+.+++.. ..++||+|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~~~~a~~~------------~~~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE-G-IESIGVDINEDMIKFCEGK------------FNVVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH-T-CCEEEECSCHHHHHHHHTT------------SEEECSCHHHHHHTSCTTCBSEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC-C-CcEEEEECCHHHHHHHHhh------------cceeeccHHHHhhhcCCCCeeEE
Confidence            45689999999999999999886 3 4799999999999999864            68889999998744 45789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++...-..  -+  .-.-..+++. +++.|||||.+++..
T Consensus       106 ~~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~  140 (240)
T 3dli_A          106 MISHFVEH--LD--PERLFELLSL-CYSKMKYSSYIVIES  140 (240)
T ss_dssp             EEESCGGG--SC--GGGHHHHHHH-HHHHBCTTCCEEEEE
T ss_pred             EECCchhh--CC--cHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence            98654211  11  0112578998 799999999998865

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.25  E-value=1.5e-11  Score=106.86  Aligned_cols=114  Identities=13%  Similarity=0.174  Sum_probs=83.0

Q ss_pred             CCCeEEEEeccchHHHHHHHh--------cCC----CcEEEEEECCH---H-----------HHHHHHhhhhh-cc----
Q 025141          102 NPKTIFIMGGGEGSTAREILR--------HKT----VEKVVMCDIDE---E-----------VVEFCKSYLVV-NK----  150 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~--------~~~----~~~v~~VEid~---~-----------vi~~a~~~~~~-~~----  150 (257)
                      ++.+||+||+|+|..+..+++        .+.    ..+++++|.+|   +           +.+.|++.+.. +.    
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            457999999999998876554        232    24899999987   3           33355555431 00    


Q ss_pred             ---CCCCC--CCeEEEEcchHHHHhcCCC----ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          151 ---EAFSD--PRLELVINDARAELESRKE----SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       151 ---~~~~~--~rv~i~~~Da~~~l~~~~~----~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                         ..+.+  .+++++.+|+++.+.....    +||+|++|++.|.. .|  .+++.++++. ++++|+|||++++.+
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~-~p--~lw~~~~l~~-l~~~L~pGG~l~tys  213 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK-NP--DMWTQNLFNA-MARLARPGGTLATFT  213 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT-CG--GGCCHHHHHH-HHHHEEEEEEEEESC
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc-Ch--hhcCHHHHHH-HHHHcCCCcEEEEEe
Confidence               00122  4678999999999877543    79999999987642 33  7899999999 899999999999753

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.25  E-value=4.5e-11  Score=101.86  Aligned_cols=106  Identities=11%  Similarity=0.129  Sum_probs=85.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ++..+|||||||+|.++..+++..+..+|+++|+|+..++.|+++...++   -..+++++.+|+.+.+.. .++||+|+
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g---l~~~i~~~~~d~l~~l~~-~~~~D~Iv   89 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG---LKEKIQVRLANGLAAFEE-TDQVSVIT   89 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---CTTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEECchhhhccc-CcCCCEEE
Confidence            45679999999999999999997656799999999999999999987664   245899999999876643 13699988


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +.-.     +  ..+ -.+++.. ..+.|+++|.++++.
T Consensus        90 iaG~-----G--g~~-i~~Il~~-~~~~L~~~~~lVlq~  119 (225)
T 3kr9_A           90 IAGM-----G--GRL-IARILEE-GLGKLANVERLILQP  119 (225)
T ss_dssp             EEEE-----C--HHH-HHHHHHH-TGGGCTTCCEEEEEE
T ss_pred             EcCC-----C--hHH-HHHHHHH-HHHHhCCCCEEEEEC
Confidence            7421     1  112 4678888 799999999999974

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.25  E-value=1.7e-11  Score=111.94  Aligned_cols=118  Identities=13%  Similarity=0.135  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH
Q 025141           87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR  166 (257)
Q Consensus        87 ~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~  166 (257)
                      .|.+++....-.  -+.+.|||||||+|.++..+++. +..+|++||.++ +++.|++....++   ...+++++.+|..
T Consensus        70 aY~~Ai~~~~~~--~~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~---~~~~i~~i~~~~~  142 (376)
T 4hc4_A           70 AYRLGILRNWAA--LRGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNG---LEDRVHVLPGPVE  142 (376)
T ss_dssp             HHHHHHHTTHHH--HTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTT---CTTTEEEEESCTT
T ss_pred             HHHHHHHhCHHh--cCCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcC---CCceEEEEeeeee
Confidence            355555432221  25689999999999999888885 568999999997 7899999887664   3579999999987


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       167 ~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +.  ..++++|+|++......   ....-.-..++.. ..+.|+|||+++.
T Consensus       143 ~~--~lpe~~DvivsE~~~~~---l~~e~~l~~~l~a-~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          143 TV--ELPEQVDAIVSEWMGYG---LLHESMLSSVLHA-RTKWLKEGGLLLP  187 (376)
T ss_dssp             TC--CCSSCEEEEECCCCBTT---BTTTCSHHHHHHH-HHHHEEEEEEEES
T ss_pred             ee--cCCccccEEEeeccccc---ccccchhhhHHHH-HHhhCCCCceECC
Confidence            75  34588999999876422   1112223566666 5789999999874

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.25  E-value=1.6e-11  Score=104.99  Aligned_cols=103  Identities=20%  Similarity=0.216  Sum_probs=82.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++||+||||+|..+..+++.. ..+|+++|+++.+++.|++.+.       .++++++.+|+.+. ....++||+|+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~-~~~~~~fD~v~  113 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTT-------SPVVCYEQKAIEDI-AIEPDAYNVVL  113 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHCC-------CTTEEEEECCGGGC-CCCTTCEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhhc-------cCCeEEEEcchhhC-CCCCCCeEEEE
Confidence            367899999999999999999864 3499999999999999998764       36899999998653 33457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-...  +    ....+++. ++++|+|||++++..
T Consensus       114 ~~~~l~~~--~----~~~~~l~~-~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          114 SSLALHYI--A----SFDDICKK-VYINLKSSGSFIFSV  145 (253)
T ss_dssp             EESCGGGC--S----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Echhhhhh--h----hHHHHHHH-HHHHcCCCcEEEEEe
Confidence            97542211  1    13578898 799999999999863

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.25  E-value=3e-11  Score=105.20  Aligned_cols=106  Identities=14%  Similarity=0.150  Sum_probs=81.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++..+ .+|+++|+++.+++.+++.+...+   ..++++++.+|+.++    +++||+|+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~----~~~fD~v~  134 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSE---NLRSKRVLLAGWEQF----DEPVDRIV  134 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCC---CCSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcC---CCCCeEEEECChhhC----CCCeeEEE
Confidence            4567999999999999999985444 499999999999999999876432   246899999998653    27899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-... .+   -....+++. +++.|||||.+++..
T Consensus       135 ~~~~l~~~-~~---~~~~~~l~~-~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          135 SIGAFEHF-GH---ERYDAFFSL-AHRLLPADGVMLLHT  168 (287)
T ss_dssp             EESCGGGT-CT---TTHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             EeCchhhc-Ch---HHHHHHHHH-HHHhcCCCCEEEEEE
Confidence            87431110 10   123578898 799999999998864

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.25  E-value=3.2e-11  Score=110.10  Aligned_cols=112  Identities=13%  Similarity=0.163  Sum_probs=85.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhcc----CCCCCCCeEEEEcchHHHH-----h
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNK----EAFSDPRLELVINDARAEL-----E  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~----~~~~~~rv~i~~~Da~~~l-----~  170 (257)
                      .++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++....    +.+..++++++.+|+.+..     .
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            356899999999999999998862 34699999999999999999875321    1123479999999987753     2


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       171 ~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ...++||+|++...-..  .+    -...+++. ++++|||||++++..
T Consensus       162 ~~~~~fD~V~~~~~l~~--~~----d~~~~l~~-~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNL--ST----NKLALFKE-IHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCTTCEEEEEEESCGGG--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEccchhc--CC----CHHHHHHH-HHHHcCCCCEEEEEE
Confidence            23478999999865322  11    13578898 799999999998753

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.24  E-value=2.5e-11  Score=109.66  Aligned_cols=113  Identities=17%  Similarity=0.108  Sum_probs=85.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+..+|||+|||+|.++.+++... +..+|+++|+|+.+++.|++++...+   . ++++++.+|+.++.. ..+.||+|
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g---~-~~i~~~~~D~~~~~~-~~~~~D~I  276 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG---L-SWIRFLRADARHLPR-FFPEVDRI  276 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT---C-TTCEEEECCGGGGGG-TCCCCSEE
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC---C-CceEEEeCChhhCcc-ccCCCCEE
Confidence            456799999999999999999853 44689999999999999999987553   1 289999999988643 33569999


Q ss_pred             EEcCCCCCCCCcccCC--chHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKL--YTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L--~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++|++-.........+  .-.++++. +++.|+|||.+++-+
T Consensus       277 i~npPyg~r~~~~~~~~~~~~~~~~~-~~~~LkpgG~l~i~t  317 (354)
T 3tma_A          277 LANPPHGLRLGRKEGLFHLYWDFLRG-ALALLPPGGRVALLT  317 (354)
T ss_dssp             EECCCSCC----CHHHHHHHHHHHHH-HHHTSCTTCEEEEEE
T ss_pred             EECCCCcCccCCcccHHHHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            9998743321111111  12578888 799999999998864

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.24  E-value=1.5e-11  Score=98.70  Aligned_cols=132  Identities=15%  Similarity=0.015  Sum_probs=91.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++..  .+++++|+++.+++.+++.         .++++++.+|    +....++||+|+
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---------~~~v~~~~~d----~~~~~~~~D~v~   80 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK---------FDSVITLSDP----KEIPDNSVDFIL   80 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH---------CTTSEEESSG----GGSCTTCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh---------CCCcEEEeCC----CCCCCCceEEEE
Confidence            456799999999999999999864  4999999999999999987         2588999999    334457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCC-C-CC----ChHHHHHHHHHHhhhCCceEEEeecCcc
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG-I-FS----HTEVFSCIYNTLRQVFKCGCCALFSSYS  254 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~-~-~~----~~~~~~~~~~~l~~~F~~v~~~~~~~~~  254 (257)
                      +...-..  .+    -...+++. +++.|+|||.+++..-.+. . ..    ..-...++.+.++ -|..+.....+.+.
T Consensus        81 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~~~~~~~~  152 (170)
T 3i9f_A           81 FANSFHD--MD----DKQHVISE-VKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKRFNPTPYH  152 (170)
T ss_dssp             EESCSTT--CS----CHHHHHHH-HHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEEECSSTTE
T ss_pred             Eccchhc--cc----CHHHHHHH-HHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEccCCCCce
Confidence            8765322  11    13578888 7999999999887531110 0 00    0001234445555 66666666555544


Q ss_pred             c
Q 025141          255 F  255 (257)
Q Consensus       255 ~  255 (257)
                      |
T Consensus       153 ~  153 (170)
T 3i9f_A          153 F  153 (170)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.24  E-value=1.5e-11  Score=112.84  Aligned_cols=104  Identities=23%  Similarity=0.199  Sum_probs=86.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCC-eEEEEcchHHHHh-cCCCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-LELVINDARAELE-SRKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~r-v~i~~~Da~~~l~-~~~~~fDv  178 (257)
                      +.++|||+++|+|..+.++++. .+..+|++||+|+..++.+++++..++   -+.+ ++++.+|++++++ ...++||+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng---l~~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN---IPEDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT---CCGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCceEEEEeCCHHHHHHHhhCCCCcE
Confidence            4579999999999999998885 345799999999999999999998774   2345 9999999999998 66678999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |++|++.    .+      .++++. +.+.|+|||++++.+
T Consensus       129 V~lDP~g----~~------~~~l~~-a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          129 VDLDPFG----TP------VPFIES-VALSMKRGGILSLTA  158 (392)
T ss_dssp             EEECCSS----CC------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEECCCc----CH------HHHHHH-HHHHhCCCCEEEEEe
Confidence            9999842    11      467887 688899999888754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.24  E-value=4.9e-11  Score=99.36  Aligned_cols=100  Identities=21%  Similarity=0.247  Sum_probs=79.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fD  177 (257)
                      ..+.+||+||||+|..+..+++. + .+|+++|+++.+++.+++.          ++++++..|+.+....   ...+||
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADR-G-IEAVGVDGDRTLVDAARAA----------GAGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTT-T-CEEEEEESCHHHHHHHHHT----------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHC-C-CEEEEEcCCHHHHHHHHHh----------cccccchhhHHhhcccccccCCCcc
Confidence            45689999999999999999986 3 5899999999999999985          3567888998887332   235699


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +|++...-.. ..      ...+++. +++.|+|||++++...
T Consensus       119 ~v~~~~~l~~-~~------~~~~l~~-~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          119 LICANFALLH-QD------IIELLSA-MRTLLVPGGALVIQTL  153 (227)
T ss_dssp             EEEEESCCCS-SC------CHHHHHH-HHHTEEEEEEEEEEEC
T ss_pred             EEEECchhhh-hh------HHHHHHH-HHHHhCCCeEEEEEec
Confidence            9999754321 11      2578898 7999999999998653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.24  E-value=2.3e-11  Score=101.07  Aligned_cols=102  Identities=15%  Similarity=0.156  Sum_probs=80.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|.++..+++. + .+|+++|+++.+++.+++    .    ..++++++.+|+.+.  ...++||+|+
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~~D~s~~~~~~a~~----~----~~~~~~~~~~d~~~~--~~~~~~D~v~  112 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGL-A-DRVTALDGSAEMIAEAGR----H----GLDNVEFRQQDLFDW--TPDRQWDAVF  112 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHH-S-SEEEEEESCHHHHHHHGG----G----CCTTEEEEECCTTSC--CCSSCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHh----c----CCCCeEEEecccccC--CCCCceeEEE
Confidence            45579999999999999999987 3 599999999999999998    1    236899999999876  4468899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-..  .+  .-....+++. +++.|+|||.+++..
T Consensus       113 ~~~~l~~--~~--~~~~~~~l~~-~~~~L~pgG~l~~~~  146 (218)
T 3ou2_A          113 FAHWLAH--VP--DDRFEAFWES-VRSAVAPGGVVEFVD  146 (218)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Eechhhc--CC--HHHHHHHHHH-HHHHcCCCeEEEEEe
Confidence            8753211  11  0012578898 799999999988764

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.24  E-value=5.3e-11  Score=101.88  Aligned_cols=138  Identities=18%  Similarity=0.148  Sum_probs=88.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--cCCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~--~~~~~fD  177 (257)
                      .+..+|||+|||+|+.+..+++. .+..+|++||+++.+++...+....      .+++.++.+|++....  ...++||
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~------r~nv~~i~~Da~~~~~~~~~~~~~D  148 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR------RPNIFPLLADARFPQSYKSVVENVD  148 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH------CTTEEEEECCTTCGGGTTTTCCCEE
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCeEEEEcccccchhhhccccceE
Confidence            34689999999999999988875 3346999999999886543332211      2579999999976422  2246899


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCC---CCCChHHHHHHHHHHhhh-CCceEEEeecCc
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG---IFSHTEVFSCIYNTLRQV-FKCGCCALFSSY  253 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~---~~~~~~~~~~~~~~l~~~-F~~v~~~~~~~~  253 (257)
                      +|++|.+.+.        ....+.+. +++.|||||.+++...+++   .....+.+....+.|++. |.-+.....++|
T Consensus       149 ~I~~d~a~~~--------~~~il~~~-~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~  219 (232)
T 3id6_C          149 VLYVDIAQPD--------QTDIAIYN-AKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPY  219 (232)
T ss_dssp             EEEECCCCTT--------HHHHHHHH-HHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTT
T ss_pred             EEEecCCChh--------HHHHHHHH-HHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence            9999976422        11223344 5669999999987542221   011223345566677653 666665555554

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.23  E-value=5.1e-12  Score=111.59  Aligned_cols=110  Identities=17%  Similarity=0.100  Sum_probs=82.7

Q ss_pred             CCCCeEEEEeccchHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      +++.+|||||||+|..+..++ +..+..+|+++|+++.+++.|++++...+   ...+++++.+|+.+.. . .++||+|
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~-~-~~~fD~v  191 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA---LAGQITLHRQDAWKLD-T-REGYDLL  191 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEECCGGGCC-C-CSCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECchhcCC-c-cCCeEEE
Confidence            567899999999999999985 33345799999999999999999886432   2457999999998753 2 2889999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++...-.....+   -....+++. +++.|+|||++++..
T Consensus       192 ~~~~~~~~~~~~---~~~~~~l~~-~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          192 TSNGLNIYEPDD---ARVTELYRR-FWQALKPGGALVTSF  227 (305)
T ss_dssp             ECCSSGGGCCCH---HHHHHHHHH-HHHHEEEEEEEEEEC
T ss_pred             EECChhhhcCCH---HHHHHHHHH-HHHhcCCCeEEEEEe
Confidence            986532110011   112347898 799999999999865

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.23  E-value=1.9e-11  Score=103.62  Aligned_cols=104  Identities=19%  Similarity=0.152  Sum_probs=79.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--hcCCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l--~~~~~~fD  177 (257)
                      .+..+|||+|||+|.++..+++.. +..+|++||+++.+++.+.+.....      ++++++.+|+.+..  ....++||
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~------~~v~~~~~d~~~~~~~~~~~~~~D  149 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR------TNIIPVIEDARHPHKYRMLIAMVD  149 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC------TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc------CCeEEEEcccCChhhhcccCCcEE
Confidence            346799999999999999999862 3469999999999877777665432      58999999998742  33457899


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|++|.+.+.        ....+++. +.+.|+|||++++.+
T Consensus       150 ~V~~~~~~~~--------~~~~~~~~-~~~~LkpgG~l~i~~  182 (233)
T 2ipx_A          150 VIFADVAQPD--------QTRIVALN-AHTFLRNGGHFVISI  182 (233)
T ss_dssp             EEEECCCCTT--------HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEEEcCCCcc--------HHHHHHHH-HHHHcCCCeEEEEEE
Confidence            9999876321        12456777 689999999998854

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.23  E-value=1.1e-11  Score=105.47  Aligned_cols=140  Identities=19%  Similarity=0.134  Sum_probs=95.7

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++.+||+||||+|..+..+++.. ..+|+++|+++.+++.|++++...+    ..+++++.+|+.+.. ...++||+|++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~fD~v~~  152 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG----KRVRNYFCCGLQDFT-PEPDSYDVIWI  152 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG----GGEEEEEECCGGGCC-CCSSCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC----CceEEEEEcChhhcC-CCCCCEEEEEE
Confidence            47899999999999999988864 4699999999999999999876431    357899999976643 33468999998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCC--------CCChHHHHHHHHHHhhh-CCceEEEeecC
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI--------FSHTEVFSCIYNTLRQV-FKCGCCALFSS  252 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~--------~~~~~~~~~~~~~l~~~-F~~v~~~~~~~  252 (257)
                      +..-..  .+.  -....+++. ++++|+|||++++.......        ........++.+.|++. |..+.......
T Consensus       153 ~~~l~~--~~~--~~~~~~l~~-~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~  227 (241)
T 2ex4_A          153 QWVIGH--LTD--QHLAEFLRR-CKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQEN  227 (241)
T ss_dssp             ESCGGG--SCH--HHHHHHHHH-HHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             cchhhh--CCH--HHHHHHHHH-HHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecCC
Confidence            854211  110  012478888 79999999999874311000        00001244566667665 77666654433

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.23  E-value=2.7e-11  Score=110.54  Aligned_cols=107  Identities=19%  Similarity=0.184  Sum_probs=82.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||||||+|.++..+++. +..+|++||++ .+++.|++++..++   ..++++++.+|+.++..  +++||+|+
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~--~~~~D~Iv  134 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANN---LDHIVEVIEGSVEDISL--PEKVDVII  134 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTT---CTTTEEEEESCGGGCCC--SSCEEEEE
T ss_pred             CCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcC---CCCeEEEEECchhhcCc--CCcceEEE
Confidence            45689999999999999999986 45699999999 99999999887553   34689999999977632  27899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +++..... .  ..-.-..+++. +++.|+|||+++..
T Consensus       135 ~~~~~~~l-~--~e~~~~~~l~~-~~~~LkpgG~li~~  168 (376)
T 3r0q_C          135 SEWMGYFL-L--RESMFDSVISA-RDRWLKPTGVMYPS  168 (376)
T ss_dssp             ECCCBTTB-T--TTCTHHHHHHH-HHHHEEEEEEEESS
T ss_pred             EcChhhcc-c--chHHHHHHHHH-HHhhCCCCeEEEEe
Confidence            98743221 1  11123467887 68999999999753

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.23  E-value=1.5e-11  Score=110.70  Aligned_cols=101  Identities=16%  Similarity=0.182  Sum_probs=83.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.++|||+|||+|.++.. ++  +..+|+++|+++.+++.+++++..++   ..++++++.+|+++++    ++||+|+
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~---l~~~v~~~~~D~~~~~----~~fD~Vi  263 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNK---LEHKIIPILSDVREVD----VKGNRVI  263 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCGGGCC----CCEEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECChHHhc----CCCcEEE
Confidence            4678999999999999999 77  35799999999999999999988764   2358999999999886    7899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      +|++..          ..++++. +.+.|+|||++++....+
T Consensus       264 ~dpP~~----------~~~~l~~-~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          264 MNLPKF----------AHKFIDK-ALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             ECCTTT----------GGGGHHH-HHHHEEEEEEEEEEEEES
T ss_pred             ECCcHh----------HHHHHHH-HHHHcCCCCEEEEEEeec
Confidence            997521          1267777 688999999988765433

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.23  E-value=1.8e-11  Score=103.52  Aligned_cols=135  Identities=16%  Similarity=0.095  Sum_probs=92.7

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++.+||+||||+|..+..+++.  ..+|+++|+++.+++.|++.+....   ...+++++.+|+.++.  ..++||+|++
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~~~~fD~v~~  138 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSP---KAEYFSFVKEDVFTWR--PTELFDLIFD  138 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSG---GGGGEEEECCCTTTCC--CSSCEEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccC---CCcceEEEECchhcCC--CCCCeeEEEE
Confidence            4569999999999999998773  3689999999999999999876321   2358999999988753  3468999998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCC----ChHHHHHHHHHHhhh-CCceEEE
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS----HTEVFSCIYNTLRQV-FKCGCCA  248 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~----~~~~~~~~~~~l~~~-F~~v~~~  248 (257)
                      ...-..  .+  .-....+++. +++.|+|||.+++..-+.....    ..-...++.+.|++. |..+..-
T Consensus       139 ~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  205 (235)
T 3lcc_A          139 YVFFCA--IE--PEMRPAWAKS-MYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE  205 (235)
T ss_dssp             ESSTTT--SC--GGGHHHHHHH-HHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred             Chhhhc--CC--HHHHHHHHHH-HHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence            654322  11  1123578898 7999999999987432110000    001234566667665 6555443

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.23  E-value=2.6e-11  Score=105.69  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=81.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++.+|||+|||+|..+..+++. + .+|+++|+++.+++.+++.+...+     .+++++.+|+.+...  .++||+|++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~-g-~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~--~~~fD~i~~  190 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL-G-YDVTSWDHNENSIAFLNETKEKEN-----LNISTALYDINAANI--QENYDFIVS  190 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCGGGCCC--CSCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHHcC-----CceEEEEeccccccc--cCCccEEEE
Confidence            6789999999999999999986 3 499999999999999999887542     289999999877533  678999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ...-... .+   -....+++. +++.|+|||++++.
T Consensus       191 ~~~~~~~-~~---~~~~~~l~~-~~~~LkpgG~l~i~  222 (286)
T 3m70_A          191 TVVFMFL-NR---ERVPSIIKN-MKEHTNVGGYNLIV  222 (286)
T ss_dssp             CSSGGGS-CG---GGHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             ccchhhC-CH---HHHHHHHHH-HHHhcCCCcEEEEE
Confidence            8643211 11   123578898 79999999986653

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.23  E-value=2.6e-11  Score=109.55  Aligned_cols=108  Identities=17%  Similarity=0.248  Sum_probs=82.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||||||+|.++..+++. +..+|++||+++ +++.|++.+..++   ..++++++.+|+.+. ....++||+|+
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~Ii  138 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANK---LDHVVTIIKGKVEEV-ELPVEKVDIII  138 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTT---CTTTEEEEESCTTTC-CCSSSCEEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcC---CCCcEEEEECcHHHc-cCCCCceEEEE
Confidence            35689999999999999999997 457999999995 9999999886543   346799999998876 23347899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++......   ...-....+++. +.+.|+|||+++..
T Consensus       139 s~~~~~~l---~~~~~~~~~l~~-~~r~LkpgG~li~~  172 (349)
T 3q7e_A          139 SEWMGYCL---FYESMLNTVLHA-RDKWLAPDGLIFPD  172 (349)
T ss_dssp             ECCCBBTB---TBTCCHHHHHHH-HHHHEEEEEEEESC
T ss_pred             Eccccccc---cCchhHHHHHHH-HHHhCCCCCEEccc
Confidence            98642210   011123567787 68999999998743

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.23  E-value=9.5e-11  Score=104.45  Aligned_cols=115  Identities=16%  Similarity=0.050  Sum_probs=85.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+..+|||+|||+|..+..+++.. +..+|+++|+++..++.+++++...+    -++++++.+|+.++.. ..++||+|
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g----~~~v~~~~~D~~~~~~-~~~~fD~I  191 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG----VLNVILFHSSSLHIGE-LNVEFDKI  191 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT----CCSEEEESSCGGGGGG-GCCCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCeEEEEECChhhccc-ccccCCEE
Confidence            445799999999999999998753 34699999999999999999987542    2479999999988654 34689999


Q ss_pred             EEcCCCCCC----CCccc-CCc-----------hHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          180 IGDLADPIE----GGPCY-KLY-----------TKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       180 i~D~~~~~~----~~p~~-~L~-----------t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      ++|++-...    ..|.. ..+           ..++++. +.+.|||||++++...+
T Consensus       192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~-~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEK-GLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEESC
T ss_pred             EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEEeCC
Confidence            999862110    01100 001           1578888 79999999999886543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.22  E-value=3.9e-11  Score=103.16  Aligned_cols=101  Identities=13%  Similarity=0.152  Sum_probs=78.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|..+..+++..  .+|+++|+++.+++.|++.+         ++++++.+|+.++-.  .++||+|+
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~~--~~~fD~v~  115 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRN---------PDAVLHHGDMRDFSL--GRRFSAVT  115 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTTCCC--SCCEEEEE
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhC---------CCCEEEECChHHCCc--cCCcCEEE
Confidence            566899999999999999999863  58999999999999999864         378999999877432  57899999


Q ss_pred             EcC-CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +.. .-..  .+ ..-....+++. +++.|+|||++++.
T Consensus       116 ~~~~~l~~--~~-~~~~~~~~l~~-~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          116 CMFSSIGH--LA-GQAELDAALER-FAAHVLPDGVVVVE  150 (263)
T ss_dssp             ECTTGGGG--SC-HHHHHHHHHHH-HHHTEEEEEEEEEC
T ss_pred             EcCchhhh--cC-CHHHHHHHHHH-HHHhcCCCcEEEEE
Confidence            874 2111  00 00012467888 79999999999985

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.22  E-value=2.4e-11  Score=103.24  Aligned_cols=103  Identities=13%  Similarity=0.058  Sum_probs=80.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++.+|||+|||+|..+..+++. + .+|+++|+++.+++.|++++...+   ..++++++.+|+.++.  ..++||+|++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~-~-~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~--~~~~~D~v~~  150 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT-G-MRVIAIDIDPVKIALARNNAEVYG---IADKIEFICGDFLLLA--SFLKADVVFL  150 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHG--GGCCCSEEEE
T ss_pred             CCCEEEECccccCHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHcC---CCcCeEEEECChHHhc--ccCCCCEEEE
Confidence            6789999999999999999986 3 699999999999999999987542   2358999999999986  3478999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +++-.....+.      ..+.. +++.|+|||++++.
T Consensus       151 ~~~~~~~~~~~------~~~~~-~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          151 SPPWGGPDYAT------AETFD-IRTMMSPDGFEIFR  180 (241)
T ss_dssp             CCCCSSGGGGG------SSSBC-TTTSCSSCHHHHHH
T ss_pred             CCCcCCcchhh------hHHHH-HHhhcCCcceeHHH
Confidence            97643211111      12335 58899999987654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.22  E-value=2.2e-11  Score=106.62  Aligned_cols=107  Identities=16%  Similarity=0.152  Sum_probs=83.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++..+ .+|+++|+++.+++.|++.+...+   ..++++++.+|+.+. ...+++||+|+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v~  155 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAG---LADNITVKYGSFLEI-PCEDNSYDFIW  155 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHT---CTTTEEEEECCTTSC-SSCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEEcCcccC-CCCCCCEeEEE
Confidence            4568999999999999999988643 499999999999999999876432   246899999998763 23357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-..  .+  .  ...+++. ++++|+|||.+++..
T Consensus       156 ~~~~l~~--~~--~--~~~~l~~-~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          156 SQDAFLH--SP--D--KLKVFQE-CARVLKPRGVMAITD  187 (297)
T ss_dssp             EESCGGG--CS--C--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ecchhhh--cC--C--HHHHHHH-HHHHcCCCeEEEEEE
Confidence            8643211  11  1  3678898 799999999988764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.22  E-value=2.8e-11  Score=107.11  Aligned_cols=106  Identities=12%  Similarity=0.068  Sum_probs=83.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|++++...+   ..++++++.+|+.+. ....++||+|+
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~V~  190 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFG-SRVEGVTLSAAQADFGNRRARELR---IDDHVRSRVCNMLDT-PFDKGAVTASW  190 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-CCCTTCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcC---CCCceEEEECChhcC-CCCCCCEeEEE
Confidence            4568999999999999999988643 689999999999999999886542   245899999998753 22357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-.       ++-...+++. +++.|+|||.+++..
T Consensus       191 ~~~~l~-------~~~~~~~l~~-~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          191 NNESTM-------YVDLHDLFSE-HSRFLKVGGRYVTIT  221 (312)
T ss_dssp             EESCGG-------GSCHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECCchh-------hCCHHHHHHH-HHHHcCCCcEEEEEE
Confidence            864321       1225688998 799999999988754

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.22  E-value=2.5e-11  Score=103.88  Aligned_cols=106  Identities=16%  Similarity=0.179  Sum_probs=82.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++..+ .+|+++|+++.+++.+++.+...      ++++++.+|+.+. ....++||+|+
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~-~~~~~~fD~v~  125 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYG-AHTHGIDICSNIVNMANERVSGN------NKIIFEANDILTK-EFPENNFDLIY  125 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHTCCSC------TTEEEEECCTTTC-CCCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhhcC------CCeEEEECccccC-CCCCCcEEEEe
Confidence            4567999999999999999998643 69999999999999999876422      6899999998764 33457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-..  .+  .-....+++. ++++|+|||.+++..
T Consensus       126 ~~~~l~~--~~--~~~~~~~l~~-~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          126 SRDAILA--LS--LENKNKLFQK-CYKWLKPTGTLLITD  159 (266)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             HHHHHHh--cC--hHHHHHHHHH-HHHHcCCCCEEEEEE
Confidence            8753211  10  0123578888 799999999998764

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.21  E-value=3.8e-11  Score=109.80  Aligned_cols=105  Identities=20%  Similarity=0.232  Sum_probs=85.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC-------------CCCCCCeEEEEcchHHH
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-------------AFSDPRLELVINDARAE  168 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~-------------~~~~~rv~i~~~Da~~~  168 (257)
                      ++.+|||+|||+|..+..+++..+..+|+++|+|+..++.+++++..+..             ..  .+++++.+|+.++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl--~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE--KTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS--SEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC--CceEEEcCcHHHH
Confidence            67899999999999999998864446899999999999999999886510             11  2399999999999


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +....++||+|++|++.    .      ..+|+.. +.+.|+|||++++.+
T Consensus       125 ~~~~~~~fD~I~lDP~~----~------~~~~l~~-a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          125 MAERHRYFHFIDLDPFG----S------PMEFLDT-ALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHSTTCEEEEEECCSS----C------CHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             HHhccCCCCEEEeCCCC----C------HHHHHHH-HHHhcCCCCEEEEEe
Confidence            87666789999999752    1      1478888 688999999887753

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.21  E-value=4.9e-11  Score=98.43  Aligned_cols=100  Identities=8%  Similarity=0.030  Sum_probs=79.7

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      +.+||+||||+|..+..+++. + .+++++|+++.+++.+++.+         ++++++.+|+.+. ....++||+|++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~~~  109 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL-G-HQIEGLEPATRLVELARQTH---------PSVTFHHGTITDL-SDSPKRWAGLLAW  109 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT-T-CCEEEECCCHHHHHHHHHHC---------TTSEEECCCGGGG-GGSCCCEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC---------CCCeEEeCccccc-ccCCCCeEEEEeh
Confidence            789999999999999999986 3 48999999999999999862         4789999998774 3445889999997


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ..-..  .+  .-....+++. ++++|+|||.+++..
T Consensus       110 ~~l~~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~~  141 (203)
T 3h2b_A          110 YSLIH--MG--PGELPDALVA-LRMAVEDGGGLLMSF  141 (203)
T ss_dssp             SSSTT--CC--TTTHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             hhHhc--CC--HHHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            54221  11  0123678898 799999999998764

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.21  E-value=3.6e-11  Score=107.04  Aligned_cols=103  Identities=18%  Similarity=0.170  Sum_probs=80.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+||+||||+|.++..+++..+ ..+|+++|+++++++.|++++...+    .++++++.+|+.+.+. ..++||+|
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g----~~~v~~~~~d~~~~~~-~~~~fD~I  148 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG----IENVIFVCGDGYYGVP-EFSPYDVI  148 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCG-GGCCEEEE
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCeEEEECChhhccc-cCCCeEEE
Confidence            4568999999999999999988643 3579999999999999999886542    2469999999987543 23689999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      +++..-+.       +.     +. +.+.|+|||++++...+
T Consensus       149 v~~~~~~~-------~~-----~~-~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          149 FVTVGVDE-------VP-----ET-WFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             EECSBBSC-------CC-----HH-HHHHEEEEEEEEEEBCB
T ss_pred             EEcCCHHH-------HH-----HH-HHHhcCCCcEEEEEECC
Confidence            99865322       11     35 57789999999998643

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.21  E-value=4.9e-12  Score=108.47  Aligned_cols=112  Identities=15%  Similarity=0.144  Sum_probs=79.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhc---cCCCCCCC-------------------
Q 025141          102 NPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVN---KEAFSDPR-------------------  157 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~---~~~~~~~r-------------------  157 (257)
                      .+.+|||+|||+|.++..+++.  .+..+|+++|+|+.+++.|++++...   +  . ..+                   
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~  127 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAG--L-TARELERREQSERFGKPSYLEA  127 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHH--H-HHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcc--c-cccchhhhhhhhhcccccchhh
Confidence            4679999999999999998875  33468999999999999999876432   1  0 011                   


Q ss_pred             ------eE-------------EEEcchHHHHhc----CCCceeEEEEcCCCCCCCCcc---cCCchHHHHHHHHcCcCCC
Q 025141          158 ------LE-------------LVINDARAELES----RKESYDVIIGDLADPIEGGPC---YKLYTKSFYEFVVKPRLNP  211 (257)
Q Consensus       158 ------v~-------------i~~~Da~~~l~~----~~~~fDvIi~D~~~~~~~~p~---~~L~t~ef~~~~~~~~L~p  211 (257)
                            ++             ++.+|+.+....    ..++||+|+++++-.......   ..-....+++. +.+.|+|
T Consensus       128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~-~~~~Lkp  206 (250)
T 1o9g_A          128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRS-LASALPA  206 (250)
T ss_dssp             HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHH-HHHHSCT
T ss_pred             hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHH-HHHhcCC
Confidence                  56             999998876532    345899999997521100000   00112478888 7999999


Q ss_pred             CcEEEE
Q 025141          212 EGIFVT  217 (257)
Q Consensus       212 gGil~~  217 (257)
                      ||++++
T Consensus       207 gG~l~~  212 (250)
T 1o9g_A          207 HAVIAV  212 (250)
T ss_dssp             TCEEEE
T ss_pred             CcEEEE
Confidence            999998

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.21  E-value=7e-11  Score=104.53  Aligned_cols=106  Identities=16%  Similarity=0.164  Sum_probs=82.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|++.+...+   ..++++++.+|+.+.    +++||+|+
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~----~~~fD~v~  160 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASID---TNRSRQVLLQGWEDF----AEPVDRIV  160 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChHHC----CCCcCEEE
Confidence            4567999999999999999988643 499999999999999999876432   246899999998664    37899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-... .+   -....+++. +++.|+|||.+++..
T Consensus       161 ~~~~l~~~-~~---~~~~~~l~~-~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          161 SIEAFEHF-GH---ENYDDFFKR-CFNIMPADGRMTVQS  194 (318)
T ss_dssp             EESCGGGT-CG---GGHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             EeChHHhc-CH---HHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            87532110 10   123678898 799999999998865

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.21  E-value=6.5e-11  Score=102.85  Aligned_cols=99  Identities=18%  Similarity=0.238  Sum_probs=78.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++ ++ .+|+++|+++.+++.+++.+         ++++++.+|+.++-  ..++||+|+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~-~~-~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~--~~~~fD~v~  122 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQ-SG-AEVLGTDNAATMIEKARQNY---------PHLHFDVADARNFR--VDKPLDAVF  122 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH-TT-CEEEEEESCHHHHHHHHHHC---------TTSCEEECCTTTCC--CSSCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHh-CC-CeEEEEECCHHHHHHHHhhC---------CCCEEEECChhhCC--cCCCcCEEE
Confidence            4568999999999999999998 43 69999999999999999864         47889999987642  247899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-.+.  +    -...+++. +++.|+|||.+++..
T Consensus       123 ~~~~l~~~--~----d~~~~l~~-~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          123 SNAMLHWV--K----EPEAAIAS-IHQALKSGGRFVAEF  154 (279)
T ss_dssp             EESCGGGC--S----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcchhhhC--c----CHHHHHHH-HHHhcCCCcEEEEEe
Confidence            87542221  1    12478888 799999999998865

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.21  E-value=5.2e-11  Score=100.60  Aligned_cols=103  Identities=20%  Similarity=0.191  Sum_probs=80.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++||+||||+|..+..+++. +..+++++|+++.+++.+++.+.       ..+++++.+|+.+.. ...++||+|+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~-~~~~~fD~v~  112 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGP-------DTGITYERADLDKLH-LPQDSFDLAY  112 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSC-------SSSEEEEECCGGGCC-CCTTCEEEEE
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcc-------cCCceEEEcChhhcc-CCCCCceEEE
Confidence            45689999999999999999986 33499999999999999998753       247999999987742 3357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-..  .+    -...+++. ++++|+|||.+++..
T Consensus       113 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          113 SSLALHY--VE----DVARLFRT-VHQALSPGGHFVFST  144 (243)
T ss_dssp             EESCGGG--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Eeccccc--cc----hHHHHHHH-HHHhcCcCcEEEEEe
Confidence            8754211  11    13578888 799999999998753

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.20  E-value=3.3e-11  Score=103.00  Aligned_cols=104  Identities=19%  Similarity=0.204  Sum_probs=81.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|..+..+++. + .+|+++|+++.+++.+++.+. .    ..++++++.+|+.+. ...+++||+|+
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~-~----~~~~~~~~~~d~~~~-~~~~~~fD~v~  109 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR-G-YRYIALDADAAMLEVFRQKIA-G----VDRKVQVVQADARAI-PLPDESVHGVI  109 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT-T-CEEEEEESCHHHHHHHHHHTT-T----SCTTEEEEESCTTSC-CSCTTCEEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHhh-c----cCCceEEEEcccccC-CCCCCCeeEEE
Confidence            45689999999999999999986 3 699999999999999999872 1    247899999998653 23357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-++.  +    -...+++. ++++|+|||.+++..
T Consensus       110 ~~~~l~~~--~----~~~~~l~~-~~~~L~pgG~l~~~~  141 (263)
T 2yqz_A          110 VVHLWHLV--P----DWPKVLAE-AIRVLKPGGALLEGW  141 (263)
T ss_dssp             EESCGGGC--T----THHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECCchhhc--C----CHHHHHHH-HHHHCCCCcEEEEEe
Confidence            87542221  1    13578888 799999999988763

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.20  E-value=7e-11  Score=106.41  Aligned_cols=106  Identities=18%  Similarity=0.166  Sum_probs=80.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||||||+|.++..+++. +..+|++||+++ +++.|++++..++   ..++++++.+|+.++ ....++||+|+
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~~D~Iv  136 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNK---LEDTITLIKGKIEEV-HLPVEKVDVII  136 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTT---CTTTEEEEESCTTTS-CCSCSCEEEEE
T ss_pred             cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcC---CCCcEEEEEeeHHHh-cCCCCcEEEEE
Confidence            45689999999999999999986 456999999997 8999999876543   246899999998775 22347899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      ++.....   .........+++. +++.|+|||+++
T Consensus       137 s~~~~~~---l~~~~~~~~~l~~-~~~~LkpgG~li  168 (340)
T 2fyt_A          137 SEWMGYF---LLFESMLDSVLYA-KNKYLAKGGSVY  168 (340)
T ss_dssp             ECCCBTT---BTTTCHHHHHHHH-HHHHEEEEEEEE
T ss_pred             EcCchhh---ccCHHHHHHHHHH-HHhhcCCCcEEE
Confidence            9863111   0011123467887 789999999987

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.20  E-value=1.1e-10  Score=99.61  Aligned_cols=106  Identities=9%  Similarity=0.076  Sum_probs=85.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ++..+|||||||+|.++..+++..+..+|+++|+++..++.|++++..++   ...+++++.+|+.+.+.. .++||+|+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g---l~~~I~~~~gD~l~~~~~-~~~~D~Iv   95 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG---LTSKIDVRLANGLSAFEE-ADNIDTIT   95 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT---CTTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchhhcccc-ccccCEEE
Confidence            56689999999999999999997656789999999999999999987654   346899999999887642 23799988


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +.--     +  . -.-.+++.. ..+.|+++|.++++.
T Consensus        96 iaGm-----G--g-~lI~~IL~~-~~~~l~~~~~lIlqp  125 (230)
T 3lec_A           96 ICGM-----G--G-RLIADILNN-DIDKLQHVKTLVLQP  125 (230)
T ss_dssp             EEEE-----C--H-HHHHHHHHH-TGGGGTTCCEEEEEE
T ss_pred             EeCC-----c--h-HHHHHHHHH-HHHHhCcCCEEEEEC
Confidence            7421     1  1 124578888 789999999999974

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.20  E-value=3.1e-11  Score=100.06  Aligned_cols=125  Identities=14%  Similarity=0.122  Sum_probs=87.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---------Hhc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---------LES  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---------l~~  171 (257)
                      .+..+|||||||+|+++..+++.  ..+|++||+++..               ..++++++.+|+.+.         +..
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~---------------~~~~v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME---------------EIAGVRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC---------------CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc---------------cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence            45689999999999999999987  4699999999741               135899999997652         110


Q ss_pred             -CCCceeEEEEcCCCCCCCCcc--cCC----chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCc
Q 025141          172 -RKESYDVIIGDLADPIEGGPC--YKL----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC  244 (257)
Q Consensus       172 -~~~~fDvIi~D~~~~~~~~p~--~~L----~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~  244 (257)
                       ..++||+|++|++.... +..  .+.    .....++. +.+.|+|||.+++..-      .......+...+++.|..
T Consensus        87 ~~~~~~D~Vlsd~~~~~~-g~~~~d~~~~~~l~~~~l~~-a~~~LkpGG~lv~k~~------~~~~~~~~~~~l~~~F~~  158 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKVS-GIPSRDHAVSYQIGQRVMEI-AVRYLRNGGNVLLKQF------QGDMTNDFIAIWRKNFSS  158 (191)
T ss_dssp             HTCSSEEEEEECCCCCCC-SCHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEE------CSTHHHHHHHHHGGGEEE
T ss_pred             ccCCcceEEecCCCcCCC-CCcccCHHHHHHHHHHHHHH-HHHHccCCCEEEEEEc------CCCCHHHHHHHHHHhcCE
Confidence             01489999999863221 110  000    01355666 6899999999998642      122356788889999998


Q ss_pred             eEEEee
Q 025141          245 GCCALF  250 (257)
Q Consensus       245 v~~~~~  250 (257)
                      |..+.-
T Consensus       159 v~~~kP  164 (191)
T 3dou_A          159 YKISKP  164 (191)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            887653

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.19  E-value=4.8e-11  Score=98.69  Aligned_cols=118  Identities=17%  Similarity=0.074  Sum_probs=82.7

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH
Q 025141           88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA  167 (257)
Q Consensus        88 y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~  167 (257)
                      |.+.+..+..  .+++.+||++|||+|..+..++...+ .+|+++|+++.+++.+++++...     .++++++.+|+.+
T Consensus        11 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~   82 (209)
T 2p8j_A           11 LYRFLKYCNE--SNLDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENFSREN-----NFKLNISKGDIRK   82 (209)
T ss_dssp             HHHHHHHHHH--SSSCSEEEEESCCSSSCTHHHHHHTT-CEEEEEECCHHHHHHHHHHHHHH-----TCCCCEEECCTTS
T ss_pred             HHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhc-----CCceEEEECchhh
Confidence            4554443322  34568999999999997444444344 59999999999999999987643     2578999999876


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      . ....++||+|++...-..  .+  .-....+++. +++.|+|||++++..
T Consensus        83 ~-~~~~~~fD~v~~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           83 L-PFKDESMSFVYSYGTIFH--MR--KNDVKEAIDE-IKRVLKPGGLACINF  128 (209)
T ss_dssp             C-CSCTTCEEEEEECSCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             C-CCCCCceeEEEEcChHHh--CC--HHHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            3 233578999998642111  00  0123578888 799999999998764

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.19  E-value=5.8e-11  Score=100.40  Aligned_cols=102  Identities=18%  Similarity=0.189  Sum_probs=81.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|..+..+++. + .+|+++|+++.+++.+++..       ..++++++.+|+.+. ....++||+|+
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~~-~~~~~~fD~v~  121 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT-G-YKAVGVDISEVMIQKGKERG-------EGPDLSFIKGDLSSL-PFENEQFEAIM  121 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHTTT-------CBTTEEEEECBTTBC-SSCTTCEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc-C-CeEEEEECCHHHHHHHHhhc-------ccCCceEEEcchhcC-CCCCCCccEEE
Confidence            46789999999999999999986 3 58999999999999999874       246899999998764 23357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-...  +    -...+++. +++.|+|||++++..
T Consensus       122 ~~~~l~~~--~----~~~~~l~~-~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          122 AINSLEWT--E----EPLRALNE-IKRVLKSDGYACIAI  153 (242)
T ss_dssp             EESCTTSS--S----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcChHhhc--c----CHHHHHHH-HHHHhCCCeEEEEEE
Confidence            87543221  1    12478888 799999999998865

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.19  E-value=8.1e-11  Score=97.34  Aligned_cols=110  Identities=19%  Similarity=0.215  Sum_probs=81.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|.++..+++.. ..+|+++|+++.+++.+++.+..      .++++++.+|+.+. ....++||+|+
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~~~~a~~~~~~------~~~i~~~~~d~~~~-~~~~~~fD~v~  112 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGG-FPNVTSVDYSSVVVAAMQACYAH------VPQLRWETMDVRKL-DFPSASFDVVL  112 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTT-CCCEEEEESCHHHHHHHHHHTTT------CTTCEEEECCTTSC-CSCSSCEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcC-CCcEEEEeCCHHHHHHHHHhccc------CCCcEEEEcchhcC-CCCCCcccEEE
Confidence            567899999999999999999864 34899999999999999998652      36899999998764 33347899999


Q ss_pred             EcCCC---------CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLAD---------PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~---------~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-         ++...+...-....+++. ++++|+|||++++..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~li~~~  159 (215)
T 2pxx_A          113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSE-VSRVLVPGGRFISMT  159 (215)
T ss_dssp             EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECcchhhhccccccccccccchhHHHHHHHHH-HHHhCcCCCEEEEEe
Confidence            86431         110000000112578888 799999999998865

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.19  E-value=2.5e-11  Score=105.66  Aligned_cols=112  Identities=14%  Similarity=0.129  Sum_probs=83.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|..+..+++.+ ..+++++|+++.+++.|++.+...+   ...+++++.+|+.+.-....++||+|+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~fD~v~  138 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQDSYGRHMDLGKEFDVIS  138 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSC---CSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC---CCccEEEEECCccccccCCCCCcCEEE
Confidence            567899999999999998888764 4599999999999999999876432   235799999998765222357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-+.....  .-....+++. ++++|+|||.+++..
T Consensus       139 ~~~~l~~~~~~--~~~~~~~l~~-~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          139 SQFSFHYAFST--SESLDIAQRN-IARHLRPGGYFIMTV  174 (298)
T ss_dssp             EESCGGGGGSS--HHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             ECchhhhhcCC--HHHHHHHHHH-HHHhcCCCCEEEEEE
Confidence            87532110000  0113578898 799999999999764

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.19  E-value=2.9e-11  Score=106.21  Aligned_cols=110  Identities=16%  Similarity=0.200  Sum_probs=81.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +.+.+||+||||+|..+..+++. + .+|+++|+++.+++.|++.+...+.. ...+++++.+|+.++-  ..++||+|+
T Consensus        81 ~~~~~vLDlGcG~G~~~~~l~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~v~~~~~d~~~~~--~~~~fD~v~  155 (299)
T 3g2m_A           81 PVSGPVLELAAGMGRLTFPFLDL-G-WEVTALELSTSVLAAFRKRLAEAPAD-VRDRCTLVQGDMSAFA--LDKRFGTVV  155 (299)
T ss_dssp             CCCSCEEEETCTTTTTHHHHHTT-T-CCEEEEESCHHHHHHHHHHHHTSCHH-HHTTEEEEECBTTBCC--CSCCEEEEE
T ss_pred             CCCCcEEEEeccCCHHHHHHHHc-C-CeEEEEECCHHHHHHHHHHHhhcccc-cccceEEEeCchhcCC--cCCCcCEEE
Confidence            45569999999999999999986 3 58999999999999999987632100 0158999999988742  257899988


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +... -... .+   -....+++. +++.|+|||++++...
T Consensus       156 ~~~~~~~~~-~~---~~~~~~l~~-~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          156 ISSGSINEL-DE---ADRRGLYAS-VREHLEPGGKFLLSLA  191 (299)
T ss_dssp             ECHHHHTTS-CH---HHHHHHHHH-HHHHEEEEEEEEEEEE
T ss_pred             ECCcccccC-CH---HHHHHHHHH-HHHHcCCCcEEEEEee
Confidence            6421 1110 11   012578898 7999999999998753

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.19  E-value=1.3e-10  Score=108.69  Aligned_cols=134  Identities=10%  Similarity=0.032  Sum_probs=94.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+|||+|||+|+.+..++.. .+..+|+++|+++..++.+++++...+    -.++.++.+|+.++.....+.||+|
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g----~~nv~v~~~Da~~l~~~~~~~FD~I  179 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG----VSNAIVTNHAPAELVPHFSGFFDRI  179 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT----CSSEEEECCCHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhhhccccCCEE
Confidence            45689999999999999988875 334699999999999999999987553    2479999999998865446789999


Q ss_pred             EEcCCCCCC----CCcc-------cC-----CchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q 025141          180 IGDLADPIE----GGPC-------YK-----LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (257)
Q Consensus       180 i~D~~~~~~----~~p~-------~~-----L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~  243 (257)
                      ++|++-...    ..|.       ..     -...++++. +.+.|+|||+++..+.+.   . ++..+.+++.+-+.++
T Consensus       180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs~---~-~eEne~vv~~~l~~~~  254 (456)
T 3m4x_A          180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSS-AIKMLKNKGQLIYSTCTF---A-PEENEEIISWLVENYP  254 (456)
T ss_dssp             EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHH-HHHTEEEEEEEEEEESCC---C-GGGTHHHHHHHHHHSS
T ss_pred             EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEEeec---c-cccCHHHHHHHHHhCC
Confidence            999872110    0110       00     012377888 789999999998765443   2 2233444444444444

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.19  E-value=3e-11  Score=102.00  Aligned_cols=93  Identities=16%  Similarity=0.315  Sum_probs=75.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvI  179 (257)
                      +++.+||+||||+|..+..+++. + .+|+++|+++.+++.++++         .++++++.+|+.+.+... .++||+|
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~d~~~~~~~~~~~~fD~v  115 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ-A-ARWAAYDFSPELLKLARAN---------APHADVYEWNGKGELPAGLGAPFGLI  115 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG-S-SEEEEEESCHHHHHHHHHH---------CTTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-C-CEEEEEECCHHHHHHHHHh---------CCCceEEEcchhhccCCcCCCCEEEE
Confidence            56789999999999999999987 3 5999999999999999987         257899999986555444 5789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ++..      .+      ..+++. +++.|+|||.++.
T Consensus       116 ~~~~------~~------~~~l~~-~~~~LkpgG~l~~  140 (226)
T 3m33_A          116 VSRR------GP------TSVILR-LPELAAPDAHFLY  140 (226)
T ss_dssp             EEES------CC------SGGGGG-HHHHEEEEEEEEE
T ss_pred             EeCC------CH------HHHHHH-HHHHcCCCcEEEE
Confidence            9872      11      133456 6889999999983

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.19  E-value=1.5e-11  Score=105.54  Aligned_cols=80  Identities=10%  Similarity=0.106  Sum_probs=63.4

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhcC----CCce
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESR----KESY  176 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~-~l~~~----~~~f  176 (257)
                      ++.+|||+|||+|.++..+++..+..+|+++|+++.+++.|++++..++   ...+++++.+|+.+ ++...    .++|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN---LSDLIKVVKVPQKTLLMDALKEESEIIY  141 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC---CCccEEEEEcchhhhhhhhhhcccCCcc
Confidence            4679999999999999888875333699999999999999999987543   23579999999876 23221    2589


Q ss_pred             eEEEEcCC
Q 025141          177 DVIIGDLA  184 (257)
Q Consensus       177 DvIi~D~~  184 (257)
                      |+|+++++
T Consensus       142 D~i~~npp  149 (254)
T 2h00_A          142 DFCMCNPP  149 (254)
T ss_dssp             SEEEECCC
T ss_pred             cEEEECCC
Confidence            99999976

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.19  E-value=7.6e-11  Score=98.23  Aligned_cols=103  Identities=19%  Similarity=0.160  Sum_probs=79.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+||+||||+|..+..+++.. +..+|+++|+++.+++.+++++...+    .++++++.+|+...+. ..++||+|
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~fD~v  150 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG----YDNVIVIVGDGTLGYE-PLAPYDRI  150 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEESCGGGCCG-GGCCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-CCCCeeEE
Confidence            456799999999999999998864 33699999999999999999886442    2469999999865433 24679999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      +++...+.       +.     +. +.+.|+|||++++...+
T Consensus       151 ~~~~~~~~-------~~-----~~-~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          151 YTTAAGPK-------IP-----EP-LIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             EESSBBSS-------CC-----HH-HHHTEEEEEEEEEEESS
T ss_pred             EECCchHH-------HH-----HH-HHHHcCCCcEEEEEECC
Confidence            99865322       11     35 67899999999987643

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.19  E-value=4e-11  Score=101.17  Aligned_cols=108  Identities=20%  Similarity=0.253  Sum_probs=80.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC------CcEEEEEECCHHHHHHHHhhhhhccC-CCCCCCeEEEEcchHHHHhcCC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT------VEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRK  173 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~------~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~i~~~Da~~~l~~~~  173 (257)
                      .+..+||+||||+|..+..+++..+      ..+|+++|+++.+++.|++++...+. .+..++++++.+|+.+.+.. .
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~  161 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-N  161 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-G
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-C
Confidence            3457999999999999998887533      14899999999999999998753210 00025899999999874322 3


Q ss_pred             CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      ++||+|+++...+.       +.     +. +.+.|+|||++++..+++
T Consensus       162 ~~fD~I~~~~~~~~-------~~-----~~-~~~~LkpgG~lvi~~~~~  197 (227)
T 1r18_A          162 APYNAIHVGAAAPD-------TP-----TE-LINQLASGGRLIVPVGPD  197 (227)
T ss_dssp             CSEEEEEECSCBSS-------CC-----HH-HHHTEEEEEEEEEEESCS
T ss_pred             CCccEEEECCchHH-------HH-----HH-HHHHhcCCCEEEEEEecC
Confidence            67999999865322       21     45 678999999999987653

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.18  E-value=1.1e-09  Score=90.64  Aligned_cols=118  Identities=17%  Similarity=0.153  Sum_probs=85.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||+|||+|.++..+++. +..+|+++|+++.+++.+++++...+     -+++++.+|+.++    +.+||+|+
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~----~~~~D~v~  117 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFK-----GKFKVFIGDVSEF----NSRVDIVI  117 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGT-----TSEEEEESCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCEEEEECchHHc----CCCCCEEE
Confidence            35689999999999999999886 34589999999999999999887542     1799999998874    35899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      +|++-...    ..-....+++. +.+.|  |++++....      .......+.+.+.+.
T Consensus       118 ~~~p~~~~----~~~~~~~~l~~-~~~~l--~~~~~~~~~------~~~~~~~~~~~l~~~  165 (207)
T 1wy7_A          118 MNPPFGSQ----RKHADRPFLLK-AFEIS--DVVYSIHLA------KPEVRRFIEKFSWEH  165 (207)
T ss_dssp             ECCCCSSS----STTTTHHHHHH-HHHHC--SEEEEEEEC------CHHHHHHHHHHHHHT
T ss_pred             EcCCCccc----cCCchHHHHHH-HHHhc--CcEEEEEeC------CcCCHHHHHHHHHHC
Confidence            99873221    11224677887 67777  676665421      233444555555544

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.18  E-value=1.5e-10  Score=99.72  Aligned_cols=106  Identities=11%  Similarity=0.111  Sum_probs=84.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ++..+|||||||+|.++..+++..+..+|+++|+|+..++.|++++..++   ...+++++.+|+.+.+.. .++||+|+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g---l~~~I~v~~gD~l~~~~~-~~~~D~Iv   95 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG---LTEQIDVRKGNGLAVIEK-KDAIDTIV   95 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---CTTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEecchhhccCc-cccccEEE
Confidence            56689999999999999999997556789999999999999999987664   346899999999887642 23699988


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +.-.     +  . -.-.+++.. ..+.|+++|.++++.
T Consensus        96 iagm-----G--g-~lI~~IL~~-~~~~L~~~~~lIlq~  125 (244)
T 3gnl_A           96 IAGM-----G--G-TLIRTILEE-GAAKLAGVTKLILQP  125 (244)
T ss_dssp             EEEE-----C--H-HHHHHHHHH-TGGGGTTCCEEEEEE
T ss_pred             EeCC-----c--h-HHHHHHHHH-HHHHhCCCCEEEEEc
Confidence            7321     1  1 123577888 789999999999974

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.17  E-value=1.4e-11  Score=104.79  Aligned_cols=111  Identities=13%  Similarity=-0.026  Sum_probs=78.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECC-HHHHHHH---HhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDID-EEVVEFC---KSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid-~~vi~~a---~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f  176 (257)
                      .++.+|||||||+|..+..+++..+..+|++||++ +.+++.|   ++.....    .-++++++.+|+.++-....+.+
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~----~~~~v~~~~~d~~~l~~~~~d~v   98 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG----GLSNVVFVIAAAESLPFELKNIA   98 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT----CCSSEEEECCBTTBCCGGGTTCE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc----CCCCeEEEEcCHHHhhhhccCeE
Confidence            45679999999999999999865455799999999 7777776   7665433    23689999999877622223667


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      |.|.+..+.+.. .........+++++ ++++|||||.+++
T Consensus        99 ~~i~~~~~~~~~-~~~~~~~~~~~l~~-~~r~LkpGG~l~i  137 (225)
T 3p2e_A           99 DSISILFPWGTL-LEYVIKPNRDILSN-VADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEEESCCHHH-HHHHHTTCHHHHHH-HHTTEEEEEEEEE
T ss_pred             EEEEEeCCCcHH-hhhhhcchHHHHHH-HHHhcCCCcEEEE
Confidence            888776542210 00001113578898 7999999999988

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.17  E-value=7e-11  Score=99.06  Aligned_cols=112  Identities=15%  Similarity=0.155  Sum_probs=82.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc-CCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-EAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      +++++||+||||+|..+..+++. + .+|+++|+++.+++.+++.+...+ ......+++++.+|+.+. ....++||+|
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v  105 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK-G-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-SFHDSSFDFA  105 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-CSCTTCEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-CCCCCceeEE
Confidence            46789999999999999999986 3 599999999999999999876432 111234789999998754 2335789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++...-.....+   -....+++. +++.|+|||.+++..
T Consensus       106 ~~~~~l~~~~~~---~~~~~~l~~-~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          106 VMQAFLTSVPDP---KERSRIIKE-VFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEESCGGGCCCH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEcchhhcCCCH---HHHHHHHHH-HHHHcCCCeEEEEEE
Confidence            987542110011   112368898 799999999998764

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.17  E-value=1.5e-10  Score=104.51  Aligned_cols=106  Identities=16%  Similarity=0.166  Sum_probs=80.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++||+||||+|.++..+++. +..+|++||+++ +++.|++.+..++   ..++++++.+|+.+.  ..+++||+|+
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~---l~~~v~~~~~d~~~~--~~~~~~D~Iv  121 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNN---LTDRIVVIPGKVEEV--SLPEQVDIII  121 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTT---CTTTEEEEESCTTTC--CCSSCEEEEE
T ss_pred             CCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcC---CCCcEEEEEcchhhC--CCCCceeEEE
Confidence            35689999999999999999986 457999999997 7799998876542   246899999998764  2236899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++...... .   .-...+.+.. +++.|+|||++++.
T Consensus       122 s~~~~~~~-~---~~~~~~~l~~-~~~~LkpgG~li~~  154 (348)
T 2y1w_A          122 SEPMGYML-F---NERMLESYLH-AKKYLKPSGNMFPT  154 (348)
T ss_dssp             ECCCBTTB-T---TTSHHHHHHH-GGGGEEEEEEEESC
T ss_pred             EeCchhcC-C---hHHHHHHHHH-HHhhcCCCeEEEEe
Confidence            98652110 0   0112467777 79999999999854

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.17  E-value=6.2e-11  Score=100.16  Aligned_cols=104  Identities=18%  Similarity=0.209  Sum_probs=79.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ++.++||+||||+|..+..+++.   .+++++|+++.+++.|++.+...     ..+++++.+|+.+.-  ..++||+|+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~--~~~~fD~v~  101 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMET-----NRHVDFWVQDMRELE--LPEPVDAIT  101 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCGGGCC--CSSCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhc-----CCceEEEEcChhhcC--CCCCcCEEE
Confidence            44589999999999999998885   59999999999999999987643     257899999987752  237899999


Q ss_pred             EcC--CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDL--ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~--~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +..  ..... .+   -....+++. +++.|+|||++++..
T Consensus       102 ~~~~~~~~~~-~~---~~~~~~l~~-~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A          102 ILCDSLNYLQ-TE---ADVKQTFDS-AARLLTDGGKLLFDV  137 (243)
T ss_dssp             ECTTGGGGCC-SH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EeCCchhhcC-CH---HHHHHHHHH-HHHhcCCCeEEEEEc
Confidence            864  11110 00   113467888 799999999999854

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.17  E-value=5.8e-11  Score=100.23  Aligned_cols=106  Identities=13%  Similarity=0.156  Sum_probs=81.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|..+..+++. + .+++++|+++.+++.+++.+...+     .+++++.+|+.+...  .++||+|+
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~--~~~fD~v~  106 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPK-F-KNTWAVDLSQEMLSEAENKFRSQG-----LKPRLACQDISNLNI--NRKFDLIT  106 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGG-S-SEEEEECSCHHHHHHHHHHHHHTT-----CCCEEECCCGGGCCC--SCCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHC-C-CcEEEEECCHHHHHHHHHHHhhcC-----CCeEEEecccccCCc--cCCceEEE
Confidence            46789999999999999999886 3 589999999999999999876432     378999999877532  27899999


Q ss_pred             EcC-CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +.. .-+....+   -....+++. +++.|+|||++++..
T Consensus       107 ~~~~~l~~~~~~---~~~~~~l~~-~~~~L~pgG~l~~~~  142 (246)
T 1y8c_A          107 CCLDSTNYIIDS---DDLKKYFKA-VSNHLKEGGVFIFDI  142 (246)
T ss_dssp             ECTTGGGGCCSH---HHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             EcCccccccCCH---HHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            864 21110000   123578898 799999999999854

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.17  E-value=1.3e-10  Score=104.13  Aligned_cols=106  Identities=16%  Similarity=0.223  Sum_probs=80.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++++|||||||+|.++..+++. +..+|++||++ .+++.|++.+..++   ..++++++.+|+.+. ....++||+|++
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~~D~Ivs  111 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNG---FSDKITLLRGKLEDV-HLPFPKVDIIIS  111 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTT---CTTTEEEEESCTTTS-CCSSSCEEEEEE
T ss_pred             CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcC---CCCCEEEEECchhhc-cCCCCcccEEEE
Confidence            5679999999999999999986 45699999999 58999999876543   246899999998775 223478999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +......  . ..-.-..++.. +++.|+|||+++.
T Consensus       112 ~~~~~~l--~-~~~~~~~~l~~-~~~~LkpgG~li~  143 (328)
T 1g6q_1          112 EWMGYFL--L-YESMMDTVLYA-RDHYLVEGGLIFP  143 (328)
T ss_dssp             CCCBTTB--S-TTCCHHHHHHH-HHHHEEEEEEEES
T ss_pred             eCchhhc--c-cHHHHHHHHHH-HHhhcCCCeEEEE
Confidence            8653210  0 11123467777 6899999999973

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.16  E-value=5.5e-11  Score=100.04  Aligned_cols=107  Identities=14%  Similarity=0.140  Sum_probs=80.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-----CCcEEEEEECCHHHHHHHHhhhhhcc-CCCCCCCeEEEEcchHHHHh---c
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-----TVEKVVMCDIDEEVVEFCKSYLVVNK-EAFSDPRLELVINDARAELE---S  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-----~~~~v~~VEid~~vi~~a~~~~~~~~-~~~~~~rv~i~~~Da~~~l~---~  171 (257)
                      .++.+||+||||+|..+..+++..     +..+|+++|+++.+++.|++++...+ .....++++++.+|+.+...   .
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK  158 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence            456899999999999999988864     23599999999999999999876431 00013689999999987431   1


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       172 ~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ..++||+|+++...+       ++     ++. +.+.|+|||++++...
T Consensus       159 ~~~~fD~I~~~~~~~-------~~-----~~~-~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          159 ELGLFDAIHVGASAS-------EL-----PEI-LVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHCCEEEEEECSBBS-------SC-----CHH-HHHHEEEEEEEEEEEE
T ss_pred             cCCCcCEEEECCchH-------HH-----HHH-HHHhcCCCcEEEEEEc
Confidence            236799999986532       12     255 5788999999998753

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.16  E-value=6.4e-11  Score=100.85  Aligned_cols=140  Identities=14%  Similarity=0.151  Sum_probs=95.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++.. ..+|+++|+++.+++.+++.+...      ++++++.+|+.+. ....++||+|+
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~-~~~~~~fD~v~  163 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM------PVGKFILASMETA-TLPPNTYDLIV  163 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS------SEEEEEESCGGGC-CCCSSCEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC------CceEEEEccHHHC-CCCCCCeEEEE
Confidence            456899999999999999988763 468999999999999999986422      6899999998764 33457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC--CCC-------CChHHHHHHHHHHhhh-CCceEEEee
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA--GIF-------SHTEVFSCIYNTLRQV-FKCGCCALF  250 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~--~~~-------~~~~~~~~~~~~l~~~-F~~v~~~~~  250 (257)
                      +...-..  .+  .-....+++. +++.|+|||++++.....  ..+       ........+.+.|++. |..+.....
T Consensus       164 ~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  238 (254)
T 1xtp_A          164 IQWTAIY--LT--DADFVKFFKH-CQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ  238 (254)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred             Ecchhhh--CC--HHHHHHHHHH-HHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence            8653211  10  0113578888 799999999988754210  000       0001224555666655 777766555


Q ss_pred             cCc
Q 025141          251 SSY  253 (257)
Q Consensus       251 ~~~  253 (257)
                      ..|
T Consensus       239 ~~~  241 (254)
T 1xtp_A          239 EEW  241 (254)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            444

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.16  E-value=7.7e-11  Score=97.16  Aligned_cols=100  Identities=16%  Similarity=0.227  Sum_probs=78.7

Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~  184 (257)
                      +||+||||+|..+..+++. + .+++++|+++.+++.+++.+...+     .+++++.+|+.+. ....++||+|++...
T Consensus        32 ~vLdiGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~-~~~~~~fD~v~~~~~  103 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL-G-YEVTAVDQSSVGLAKAKQLAQEKG-----VKITTVQSNLADF-DIVADAWEGIVSIFC  103 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT-T-CEEEEECSSHHHHHHHHHHHHHHT-----CCEEEECCBTTTB-SCCTTTCSEEEEECC
T ss_pred             CEEEECCCCCHhHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHhcC-----CceEEEEcChhhc-CCCcCCccEEEEEhh
Confidence            9999999999999999886 3 599999999999999999876442     3789999998765 223478999998532


Q ss_pred             CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                       ..  .+   -....+++. +++.|+|||.+++..
T Consensus       104 -~~--~~---~~~~~~l~~-~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          104 -HL--PS---SLRQQLYPK-VYQGLKPGGVFILEG  131 (202)
T ss_dssp             -CC--CH---HHHHHHHHH-HHTTCCSSEEEEEEE
T ss_pred             -cC--CH---HHHHHHHHH-HHHhcCCCcEEEEEE
Confidence             11  11   123578888 799999999998864

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.16  E-value=4.7e-10  Score=92.57  Aligned_cols=97  Identities=19%  Similarity=0.163  Sum_probs=73.2

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ..++++|||+|||+|.++..+++. +..+|++||+++.+++.|++++.         +++++.+|+.++    +++||+|
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~---------~~~~~~~d~~~~----~~~~D~v  114 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSEI----SGKYDTW  114 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGGC----CCCEEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC---------CCEEEECcHHHC----CCCeeEE
Confidence            346789999999999999999886 45689999999999999998753         689999998874    3789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ++|++-...  .  .-....+++. +.+.|  |+++++
T Consensus       115 ~~~~p~~~~--~--~~~~~~~l~~-~~~~~--g~~~~~  145 (200)
T 1ne2_A          115 IMNPPFGSV--V--KHSDRAFIDK-AFETS--MWIYSI  145 (200)
T ss_dssp             EECCCC-----------CHHHHHH-HHHHE--EEEEEE
T ss_pred             EECCCchhc--c--CchhHHHHHH-HHHhc--CcEEEE
Confidence            999863321  1  1123577888 67777  554444

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.16  E-value=1e-10  Score=99.22  Aligned_cols=103  Identities=24%  Similarity=0.288  Sum_probs=78.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|.++..+++..+ .+|+++|+++.+++.|++++...+    -++++++.+|+..-+.. ..+||+|+
T Consensus        90 ~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~fD~Ii  163 (235)
T 1jg1_A           90 KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG----VKNVHVILGDGSKGFPP-KAPYDVII  163 (235)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCGG-GCCEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC----CCCcEEEECCcccCCCC-CCCccEEE
Confidence            4567999999999999999998654 689999999999999999886442    24699999998332221 24699999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      ++...+.       +.     +. +.+.|+|||++++....+
T Consensus       164 ~~~~~~~-------~~-----~~-~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          164 VTAGAPK-------IP-----EP-LIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             ECSBBSS-------CC-----HH-HHHTEEEEEEEEEEECSS
T ss_pred             ECCcHHH-------HH-----HH-HHHhcCCCcEEEEEEecC
Confidence            9864321       11     24 577999999999887543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.16  E-value=1.4e-10  Score=97.73  Aligned_cols=99  Identities=21%  Similarity=0.340  Sum_probs=78.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++..  .+|+++|+++.+++.+++++...      ++++++.+|+.+.+. ..++||+|+
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~------~~v~~~~~d~~~~~~-~~~~fD~v~  139 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY------NNIKLILGDGTLGYE-EEKPYDRVV  139 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC------SSEEEEESCGGGCCG-GGCCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhc------CCeEEEECCcccccc-cCCCccEEE
Confidence            456799999999999999999864  69999999999999999987643      289999999877332 246899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      ++..-+       ++.     .. +.+.|+|||++++...+
T Consensus       140 ~~~~~~-------~~~-----~~-~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          140 VWATAP-------TLL-----CK-PYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             ESSBBS-------SCC-----HH-HHHTEEEEEEEEEEECS
T ss_pred             ECCcHH-------HHH-----HH-HHHHcCCCcEEEEEEcC
Confidence            986432       121     34 57899999999987643

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.15  E-value=5.1e-11  Score=103.94  Aligned_cols=115  Identities=8%  Similarity=0.070  Sum_probs=81.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--cCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~--~~~~~fDv  178 (257)
                      .++.+||+||||+|..+..+++. + .+|+++|+++.+++.|++...........+++.+..+|+.+.-.  ...++||+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~  133 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEE-G-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  133 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence            35689999999999999999986 3 49999999999999999875321100112578899999877642  23578999


Q ss_pred             EEEc--CCCCCCCCcc-cCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGD--LADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D--~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |++.  ...... .+. ..-....+++. ++++|+|||++++..
T Consensus       134 V~~~g~~l~~~~-~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          134 VICLGNSFAHLP-DSKGDQSEHRLALKN-IASMVRPGGLLVIDH  175 (293)
T ss_dssp             EEECTTCGGGSC-CSSSSSHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEEcChHHhhcC-ccccCHHHHHHHHHH-HHHHcCCCeEEEEEe
Confidence            9985  222210 000 00113578898 799999999999753

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.15  E-value=3.2e-11  Score=108.59  Aligned_cols=107  Identities=21%  Similarity=0.259  Sum_probs=83.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      .+.+|||||||+|.++..+++..+..+|+++|+++.+++.+++++..++     .+.+++.+|+.++.   .++||+|++
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~~~~~~d~~~~~---~~~fD~Iv~  267 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG-----VEGEVFASNVFSEV---KGRFDMIIS  267 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT-----CCCEEEECSTTTTC---CSCEEEEEE
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-----CCCEEEEccccccc---cCCeeEEEE
Confidence            4579999999999999999987554699999999999999999987542     34678899987653   568999999


Q ss_pred             cCCCCCCCCcc-cCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       182 D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +++-+.  +.. ..-....+++. +++.|+|||.+++..
T Consensus       268 ~~~~~~--g~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~  303 (343)
T 2pjd_A          268 NPPFHD--GMQTSLDAAQTLIRG-AVRHLNSGGELRIVA  303 (343)
T ss_dssp             CCCCCS--SSHHHHHHHHHHHHH-HGGGEEEEEEEEEEE
T ss_pred             CCCccc--CccCCHHHHHHHHHH-HHHhCCCCcEEEEEE
Confidence            976332  110 01113578998 799999999988754

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.15  E-value=2.1e-10  Score=92.92  Aligned_cols=121  Identities=13%  Similarity=0.117  Sum_probs=81.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||+|||+|.++..+++..   +|+++|+++.+++.             .++++++.+|+.+.+.  .++||+|+
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-------------~~~~~~~~~d~~~~~~--~~~fD~i~   83 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-------------HRGGNLVRADLLCSIN--QESVDVVV   83 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-------------CSSSCEEECSTTTTBC--GGGCSEEE
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-------------ccCCeEEECChhhhcc--cCCCCEEE
Confidence            456799999999999999998853   99999999999987             1478999999987443  37899999


Q ss_pred             EcCCCCCCCCcc---cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEE
Q 025141          181 GDLADPIEGGPC---YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCC  247 (257)
Q Consensus       181 ~D~~~~~~~~p~---~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~  247 (257)
                      ++++-.....+.   ......++++. +.+.| |||.+++....   ...   ...+.+.+++. |..+..
T Consensus        84 ~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l-pgG~l~~~~~~---~~~---~~~l~~~l~~~gf~~~~~  146 (170)
T 3q87_B           84 FNPPYVPDTDDPIIGGGYLGREVIDR-FVDAV-TVGMLYLLVIE---ANR---PKEVLARLEERGYGTRIL  146 (170)
T ss_dssp             ECCCCBTTCCCTTTBCCGGGCHHHHH-HHHHC-CSSEEEEEEEG---GGC---HHHHHHHHHHTTCEEEEE
T ss_pred             ECCCCccCCccccccCCcchHHHHHH-HHhhC-CCCEEEEEEec---CCC---HHHHHHHHHHCCCcEEEE
Confidence            987632210100   00112456777 56677 99999875421   122   33455556554 544443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.15  E-value=9.7e-11  Score=99.84  Aligned_cols=106  Identities=17%  Similarity=0.248  Sum_probs=80.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|..+..+++. + .+|+++|+++.+++.|++.+...     ..+++++.+|+.+..  ..++||+|+
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~-~-~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~--~~~~fD~v~  110 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER-G-YEVVGLDLHEEMLRVARRKAKER-----NLKIEFLQGDVLEIA--FKNEFDAVT  110 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEESCGGGCC--CCSCEEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHhc-----CCceEEEECChhhcc--cCCCccEEE
Confidence            45689999999999999999986 3 58999999999999999987643     247999999988742  246899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +.........+   -....+++. +++.|+|||++++..
T Consensus       111 ~~~~~~~~~~~---~~~~~~l~~-~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          111 MFFSTIMYFDE---EDLRKLFSK-VAEALKPGGVFITDF  145 (252)
T ss_dssp             ECSSGGGGSCH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcCCchhcCCH---HHHHHHHHH-HHHHcCCCeEEEEec
Confidence            75321110000   113578888 799999999998754

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.14  E-value=3.3e-10  Score=106.65  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=86.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ++.+|||+|||+|+.+..+++.. +..+|+++|+++..++.+++++...+    -++++++.+|+.++.....+.||+|+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g----~~nv~~~~~D~~~~~~~~~~~fD~Il  192 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG----ISNVALTHFDGRVFGAAVPEMFDAIL  192 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT----CCSEEEECCCSTTHHHHSTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHhhhhccccCCEEE
Confidence            56799999999999999988863 34699999999999999999987542    24799999999887543457899999


Q ss_pred             EcCCCCCC----CCccc-CCc-----------hHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          181 GDLADPIE----GGPCY-KLY-----------TKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       181 ~D~~~~~~----~~p~~-~L~-----------t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      +|++-...    ..|.. ..+           ..++++. +.+.|||||+++..+.+
T Consensus       193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDS-AFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEESC
T ss_pred             ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHH-HHHhcCCCCEEEEeccc
Confidence            99873210    01110 111           2467887 78999999999976544

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.14  E-value=6.9e-11  Score=100.45  Aligned_cols=104  Identities=9%  Similarity=0.019  Sum_probs=79.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC----CCce
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----KESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~----~~~f  176 (257)
                      .+..+|||||||+|..+..+++...  +|++||+++.+++.+++.+.       ..+++++.+|+.+.-...    ...|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~~  125 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT-------AANISYRLLDGLVPEQAAQIHSEIGD  125 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC-------CTTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc-------ccCceEEECcccccccccccccccCc
Confidence            4557899999999999999998643  89999999999999998762       348999999987753221    1249


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|++...-... .+   -....+++. ++++|+|||.+++.
T Consensus       126 d~v~~~~~~~~~-~~---~~~~~~l~~-~~~~LkpgG~l~i~  162 (245)
T 3ggd_A          126 ANIYMRTGFHHI-PV---EKRELLGQS-LRILLGKQGAMYLI  162 (245)
T ss_dssp             CEEEEESSSTTS-CG---GGHHHHHHH-HHHHHTTTCEEEEE
T ss_pred             cEEEEcchhhcC-CH---HHHHHHHHH-HHHHcCCCCEEEEE
Confidence            999998654331 11   123578898 79999999986654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.14  E-value=7e-11  Score=98.18  Aligned_cols=130  Identities=14%  Similarity=0.078  Sum_probs=89.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|..+..+++. + .+|+++|+++.+++.+++.+          +++++.+|+.+.-  ..++||+|+
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~----------~~~~~~~d~~~~~--~~~~fD~v~  107 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAA-G-FDVDATDGSPELAAEASRRL----------GRPVRTMLFHQLD--AIDAYDAVW  107 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHH----------TSCCEECCGGGCC--CCSCEEEEE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHc-C-CeEEEECCCHHHHHHHHHhc----------CCceEEeeeccCC--CCCcEEEEE
Confidence            45689999999999999999986 3 59999999999999999875          3466778876643  568899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCC--------CChHHHHHHHHHHhhh--CCceEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--------SHTEVFSCIYNTLRQV--FKCGCCAL  249 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~--------~~~~~~~~~~~~l~~~--F~~v~~~~  249 (257)
                      +...-..  .+  .-....+++. +++.|+|||++++........        ...-....+.+.|++.  |..+....
T Consensus       108 ~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~  181 (211)
T 3e23_A          108 AHACLLH--VP--RDELADVLKL-IWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVES  181 (211)
T ss_dssp             ECSCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred             ecCchhh--cC--HHHHHHHHHH-HHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence            8753211  01  0012478888 799999999998864221100        0001234555666654  66665543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.14  E-value=1.5e-10  Score=95.98  Aligned_cols=98  Identities=18%  Similarity=0.186  Sum_probs=76.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|..+..+    +..+++++|+++.+++.+++.+         ++++++.+|+.+. ...+++||+|+
T Consensus        35 ~~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~  100 (211)
T 2gs9_A           35 PPGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA---------PEATWVRAWGEAL-PFPGESFDVVL  100 (211)
T ss_dssp             CCCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC---------TTSEEECCCTTSC-CSCSSCEEEEE
T ss_pred             CCCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcccccC-CCCCCcEEEEE
Confidence            36789999999999999887    3348999999999999999875         4678899997653 23356899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-..  .+    ....+++. ++++|+|||.+++..
T Consensus       101 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~i~~  132 (211)
T 2gs9_A          101 LFTTLEF--VE----DVERVLLE-ARRVLRPGGALVVGV  132 (211)
T ss_dssp             EESCTTT--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcChhhh--cC----CHHHHHHH-HHHHcCCCCEEEEEe
Confidence            8754322  11    13578888 799999999998865

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.14  E-value=1.8e-10  Score=96.84  Aligned_cols=107  Identities=23%  Similarity=0.323  Sum_probs=79.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccC-CCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .++.+||+||||+|..+..+++.. +..+|+++|+++.+++.+++++...+. .+..++++++.+|+..... ..++||+
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  154 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDA  154 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCE
Confidence            456799999999999999988763 335999999999999999998764210 0013589999999875422 2467999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      |+++...+       ++.     +. +.+.|+|||++++...+
T Consensus       155 i~~~~~~~-------~~~-----~~-~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          155 IHVGAAAP-------VVP-----QA-LIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEECSBBS-------SCC-----HH-HHHTEEEEEEEEEEESC
T ss_pred             EEECCchH-------HHH-----HH-HHHhcCCCcEEEEEEec
Confidence            99986532       222     45 67899999999987654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.13  E-value=2e-10  Score=93.23  Aligned_cols=126  Identities=16%  Similarity=0.231  Sum_probs=88.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|..+..+++. + .+++++|+++.+++.+++.+         ++++++.+|+.+. ....++||+|+
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~~D~~~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~~D~i~  112 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ-G-HDVLGTDLDPILIDYAKQDF---------PEARWVVGDLSVD-QISETDFDLIV  112 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTTS-CCCCCCEEEEE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC-C-CcEEEEcCCHHHHHHHHHhC---------CCCcEEEcccccC-CCCCCceeEEE
Confidence            56789999999999999999986 3 59999999999999999865         3588999998764 22347899999


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEE
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCC  247 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~  247 (257)
                      ++.. .... .+   -....+++. +++.|+|||++++...... ...   ...+.+.+++. |..+..
T Consensus       113 ~~~~~~~~~-~~---~~~~~~l~~-~~~~l~~~G~l~~~~~~~~-~~~---~~~~~~~l~~~Gf~~~~~  172 (195)
T 3cgg_A          113 SAGNVMGFL-AE---DGREPALAN-IHRALGADGRAVIGFGAGR-GWV---FGDFLEVAERVGLELENA  172 (195)
T ss_dssp             ECCCCGGGS-CH---HHHHHHHHH-HHHHEEEEEEEEEEEETTS-SCC---HHHHHHHHHHHTEEEEEE
T ss_pred             ECCcHHhhc-Ch---HHHHHHHHH-HHHHhCCCCEEEEEeCCCC-CcC---HHHHHHHHHHcCCEEeee
Confidence            9732 1110 10   012578888 7999999999988653321 112   33455555554 544444

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.13  E-value=6.2e-11  Score=94.47  Aligned_cols=127  Identities=19%  Similarity=0.278  Sum_probs=87.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-----h--cC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-----E--SR  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-----~--~~  172 (257)
                      .++.+||++|||+|..+..+++. .+..+++++|+++ +++              .++++++.+|+.+.-     .  ..
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~--------------~~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP--------------IVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC--------------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc--------------cCcEEEEEcccccchhhhhhhccCC
Confidence            45679999999999999999886 3346999999998 532              157899999987652     1  23


Q ss_pred             CCceeEEEEcCCCCCCCCccc-CC----chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025141          173 KESYDVIIGDLADPIEGGPCY-KL----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC  247 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~-~L----~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  247 (257)
                      .++||+|+++.+-.+...+.. +.    ....+++. +.+.|+|||.+++.....      .....+.+.+++.|..+..
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~~gG~l~~~~~~~------~~~~~~~~~~~~~~~~~~~  158 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEM-CRDVLAPGGSFVVKVFQG------EGFDEYLREIRSLFTKVKV  158 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEESS------TTHHHHHHHHHHHEEEEEE
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHH-HHHHcCCCcEEEEEEecC------CcHHHHHHHHHHhhhhEEe
Confidence            468999999876432111100 00    01578888 799999999998864221      1234566667777777665


Q ss_pred             Ee
Q 025141          248 AL  249 (257)
Q Consensus       248 ~~  249 (257)
                      ..
T Consensus       159 ~~  160 (180)
T 1ej0_A          159 RK  160 (180)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.13  E-value=7.3e-11  Score=104.41  Aligned_cols=114  Identities=18%  Similarity=0.243  Sum_probs=82.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC---CCCCCCeEEEEcchHHHH-----hcC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE---AFSDPRLELVINDARAEL-----ESR  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~---~~~~~rv~i~~~Da~~~l-----~~~  172 (257)
                      +++.+|||||||+|..+..+++.+ ..+++++|+++.+++.|++.+.....   .....+++++.+|+.+..     ...
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGR-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            367899999999999999988753 57999999999999999998753210   001347999999987752     112


Q ss_pred             CCceeEEEEcCCCCCCCCcccCC-chHHHHHHHHcCcCCCCcEEEEec
Q 025141          173 KESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .++||+|++...-++.  . ..+ ....+++. ++++|+|||++++..
T Consensus       112 ~~~fD~V~~~~~l~~~--~-~~~~~~~~~l~~-~~~~LkpgG~li~~~  155 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYS--F-ESYEQADMMLRN-ACERLSPGGYFIGTT  155 (313)
T ss_dssp             TCCEEEEEEETCGGGG--G-GSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             CCCEEEEEEecchhhc--c-CCHHHHHHHHHH-HHHHhCCCcEEEEec
Confidence            3589999987543220  0 011 12478898 799999999999864

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.12  E-value=1.4e-10  Score=102.90  Aligned_cols=114  Identities=10%  Similarity=0.100  Sum_probs=75.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCC--CCeEEEEcch------HHHHh-c
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD--PRLELVINDA------RAELE-S  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~--~rv~i~~~Da------~~~l~-~  171 (257)
                      +.+.+|||||||+|..+..+++. +..+|+++|+++.+++.|++...........  .++++++.|.      .+... .
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            34689999999999866655553 3469999999999999999987532100000  1256777776      22211 1


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       172 ~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ..++||+|++-..-+....+ .+  ...+++. ++++|||||++++..
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~-~~--~~~~l~~-~~r~LkpGG~~i~~~  169 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHP-RH--YATVMNN-LSELTASGGKVLITT  169 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCST-TT--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cCCCeeEEEECchHHHhCCH-HH--HHHHHHH-HHHHcCCCCEEEEEe
Confidence            34789999876432110011 12  2588999 799999999998754

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.12  E-value=5.5e-11  Score=97.96  Aligned_cols=126  Identities=19%  Similarity=0.213  Sum_probs=85.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC--CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH---------
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---------  169 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l---------  169 (257)
                      .+..+|||||||+|.++..+++..+  ..+|+++|+++..               ..++++++.+|+.+..         
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------------~~~~v~~~~~d~~~~~~~~~~~~~~   85 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------------PIPNVYFIQGEIGKDNMNNIKNINY   85 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------------CCTTCEEEECCTTTTSSCCC-----
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------------CCCCceEEEccccchhhhhhccccc
Confidence            4567999999999999999998644  4799999999831               1257888888876542         


Q ss_pred             -------------h--cCCCceeEEEEcCCCCCCCCcc--cCCc----hHHHHHHHHcCcCCCCcEEEEecCCCCCCCCh
Q 025141          170 -------------E--SRKESYDVIIGDLADPIEGGPC--YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHT  228 (257)
Q Consensus       170 -------------~--~~~~~fDvIi~D~~~~~~~~p~--~~L~----t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~  228 (257)
                                   .  -..++||+|++|...++. +..  .+..    ...+++. +.+.|+|||.+++.....      
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~-g~~~~d~~~~~~~~~~~l~~-~~~~LkpgG~lv~~~~~~------  157 (201)
T 2plw_A           86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCI-GNKIDDHLNSCELTLSITHF-MEQYINIGGTYIVKMYLG------  157 (201)
T ss_dssp             ------CHHHHHHHHHHTTCCEEEEEECCCCCCC-SCHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEECS------
T ss_pred             cccccchhhHHHHHhhcCCCcccEEEeCCCcCCC-CCcccCHHHHHHHHHHHHHH-HHHHccCCCEEEEEEeCC------
Confidence                         0  124689999999753321 110  0000    1246777 689999999999854221      


Q ss_pred             HHHHHHHHHHhhhCCceEEEe
Q 025141          229 EVFSCIYNTLRQVFKCGCCAL  249 (257)
Q Consensus       229 ~~~~~~~~~l~~~F~~v~~~~  249 (257)
                      .....+...++..|..+..+.
T Consensus       158 ~~~~~l~~~l~~~f~~v~~~~  178 (201)
T 2plw_A          158 SQTNNLKTYLKGMFQLVHTTK  178 (201)
T ss_dssp             TTHHHHHHHHHTTEEEEEECC
T ss_pred             CCHHHHHHHHHHHHheEEEEC
Confidence            124566777777787776543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.10  E-value=4e-10  Score=103.71  Aligned_cols=110  Identities=11%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----ccCCCCCCCeEEEEcchHHHHhcC-CC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----NKEAFSDPRLELVINDARAELESR-KE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~~~~~~~~rv~i~~~Da~~~l~~~-~~  174 (257)
                      .+..+|||||||+|.++..+++..+..+|++||+++.++++|++....     .......++++++.+|+.+.--.. -.
T Consensus       172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~  251 (438)
T 3uwp_A          172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA  251 (438)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccC
Confidence            456899999999999999988765656799999999999999875321     000112368999999987643211 14


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .||+|+++.+- .  .+    -....+++ +.+.|||||++++.
T Consensus       252 ~aDVVf~Nn~~-F--~p----dl~~aL~E-i~RvLKPGGrIVss  287 (438)
T 3uwp_A          252 NTSVIFVNNFA-F--GP----EVDHQLKE-RFANMKEGGRIVSS  287 (438)
T ss_dssp             TCSEEEECCTT-C--CH----HHHHHHHH-HHTTSCTTCEEEES
T ss_pred             CccEEEEcccc-c--Cc----hHHHHHHH-HHHcCCCCcEEEEe
Confidence            69999997542 1  12    12355677 68999999999874

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.10  E-value=1.9e-10  Score=96.94  Aligned_cols=101  Identities=13%  Similarity=0.231  Sum_probs=77.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|..+..+++..  .+++++|+++.+++.+++.+         ++++++.+|+.+.-  ..++||+|+
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~~--~~~~~D~v~  105 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL---------PDATLHQGDMRDFR--LGRKFSAVV  105 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC---------TTCEEEECCTTTCC--CSSCEEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC---------CCCEEEECCHHHcc--cCCCCcEEE
Confidence            567899999999999999998864  38999999999999999864         46899999987642  257899999


Q ss_pred             EcC--CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDL--ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~--~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +..  .... ..+   -....+++. +++.|+|||.+++..
T Consensus       106 ~~~~~~~~~-~~~---~~~~~~l~~-~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          106 SMFSSVGYL-KTT---EELGAAVAS-FAEHLEPGGVVVVEP  141 (239)
T ss_dssp             ECTTGGGGC-CSH---HHHHHHHHH-HHHTEEEEEEEEECC
T ss_pred             EcCchHhhc-CCH---HHHHHHHHH-HHHhcCCCeEEEEEe
Confidence            532  1111 000   112578888 799999999999863

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.09  E-value=6.9e-10  Score=103.54  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=85.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-CceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-~~fDv  178 (257)
                      .++.+|||+|||.|+.+..++...+. .+|+++|+++..++.+++++...+    .++++++.+|+.++..... ++||+
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~fD~  333 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG----IKIVKPLVKDARKAPEIIGEEVADK  333 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCTTCCSSSSCSSCEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEEEcChhhcchhhccCCCCE
Confidence            34579999999999999999886433 699999999999999999986542    3579999999877643222 67999


Q ss_pred             EEEcCCCCCC----CCcc-------cCC-----chHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          179 IIGDLADPIE----GGPC-------YKL-----YTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       179 Ii~D~~~~~~----~~p~-------~~L-----~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      |++|++-...    ..|.       ..+     ...++++. +.+.|+|||.++....+
T Consensus       334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvy~tcs  391 (450)
T 2yxl_A          334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLES-AARLVKPGGRLLYTTCS  391 (450)
T ss_dssp             EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHH-HHTTEEEEEEEEEEESC
T ss_pred             EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCC
Confidence            9999873211    0110       000     01578888 79999999999876543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.09  E-value=2.6e-10  Score=95.26  Aligned_cols=110  Identities=13%  Similarity=0.038  Sum_probs=75.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCK----SYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~----~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f  176 (257)
                      .++.+|||||||+|..+..+++..+..+|++||+++.+++.+.    +.....    ..++++++.+|+.+. ....+. 
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~----~~~~v~~~~~d~~~l-~~~~~~-   99 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKG----GLPNLLYLWATAERL-PPLSGV-   99 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGT----CCTTEEEEECCSTTC-CSCCCE-
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhc----CCCceEEEecchhhC-CCCCCC-
Confidence            4567999999999999999999765679999999999887533    222222    235899999998873 333344 


Q ss_pred             eEEEEcCCCCCCCCcccC-CchHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYK-LYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~-L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |.|++......  ....+ --...+++. ++++|||||++++..
T Consensus       100 d~v~~~~~~~~--~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          100 GELHVLMPWGS--LLRGVLGSSPEMLRG-MAAVCRPGASFLVAL  140 (218)
T ss_dssp             EEEEEESCCHH--HHHHHHTSSSHHHHH-HHHTEEEEEEEEEEE
T ss_pred             CEEEEEccchh--hhhhhhccHHHHHHH-HHHHcCCCcEEEEEe
Confidence            87775442100  00000 001478888 799999999998854

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.08  E-value=4.4e-10  Score=104.36  Aligned_cols=108  Identities=11%  Similarity=0.095  Sum_probs=78.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHH-------HhhhhhccCCCCCCCeEEEEcchHH---HHh
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC-------KSYLVVNKEAFSDPRLELVINDARA---ELE  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a-------~~~~~~~~~~~~~~rv~i~~~Da~~---~l~  170 (257)
                      .++.+|||||||+|.++..+++..+..+|++||+++.+++.|       ++++...+  ....+++++.+|+..   .+.
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G--l~~~nV~~i~gD~~~~~~~~~  318 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG--MRLNNVEFSLKKSFVDNNRVA  318 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT--BCCCCEEEEESSCSTTCHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC--CCCCceEEEEcCccccccccc
Confidence            456899999999999999999864456899999999999999       76665332  113689999986542   122


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       171 ~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ...++||+|+++.+- .  .+  .  -...++. +.+.|+|||.+++.
T Consensus       319 ~~~~~FDvIvvn~~l-~--~~--d--~~~~L~e-l~r~LKpGG~lVi~  358 (433)
T 1u2z_A          319 ELIPQCDVILVNNFL-F--DE--D--LNKKVEK-ILQTAKVGCKIISL  358 (433)
T ss_dssp             HHGGGCSEEEECCTT-C--CH--H--HHHHHHH-HHTTCCTTCEEEES
T ss_pred             cccCCCCEEEEeCcc-c--cc--c--HHHHHHH-HHHhCCCCeEEEEe
Confidence            223689999986432 1  11  1  2356778 79999999999875

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.08  E-value=2.8e-10  Score=94.92  Aligned_cols=99  Identities=19%  Similarity=0.166  Sum_probs=76.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-~~~~~~fDvI  179 (257)
                      .++.+||+||||+|..+..+++. + .+++++|+++.+++.+++.+.           +++.+|+.++. ....++||+|
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~-----------~~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLD-----------HVVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSS-----------EEEESCTTTCCCCSCTTCEEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCC-----------cEEEcchhhcCCCCCCCccCEE
Confidence            46789999999999999999987 4 699999999999999997531           67788876542 2234789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++...-..  .+    -..++++. +++.|+|||.+++..
T Consensus        98 ~~~~~l~~--~~----~~~~~l~~-~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           98 IFGDVLEH--LF----DPWAVIEK-VKPYIKQNGVILASI  130 (230)
T ss_dssp             EEESCGGG--SS----CHHHHHHH-TGGGEEEEEEEEEEE
T ss_pred             EECChhhh--cC----CHHHHHHH-HHHHcCCCCEEEEEe
Confidence            98643211  11    12578898 799999999998864

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.07  E-value=2.4e-10  Score=103.53  Aligned_cols=109  Identities=12%  Similarity=0.075  Sum_probs=81.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ..+++|||||||+|..+..+++..+..+++++|+ |.+++.|++++...+   ..+|++++.+|+.+.-...++.||+|+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~p~~~D~v~  253 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS---GSERIHGHGANLLDRDVPFPTGFDAVW  253 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT---TGGGEEEEECCCCSSSCCCCCCCSEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC---cccceEEEEccccccCCCCCCCcCEEE
Confidence            4678999999999999999988655579999999 999999999876332   236899999997653001136899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-+.  -+  .-....+++. +++.|+|||.+++.
T Consensus       254 ~~~vlh~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~  286 (363)
T 3dp7_A          254 MSQFLDC--FS--EEEVISILTR-VAQSIGKDSKVYIM  286 (363)
T ss_dssp             EESCSTT--SC--HHHHHHHHHH-HHHHCCTTCEEEEE
T ss_pred             Eechhhh--CC--HHHHHHHHHH-HHHhcCCCcEEEEE
Confidence            8654221  11  0112467888 79999999988774

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.07  E-value=1.6e-10  Score=94.70  Aligned_cols=124  Identities=14%  Similarity=0.109  Sum_probs=84.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCC---------cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHh
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTV---------EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELE  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~---------~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~-~~Da~~~l~  170 (257)
                      .++.+|||||||+|.++..+++..+.         .+|+++|+++..               ..++++++ .+|..+.-.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------------~~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------------PLEGATFLCPADVTDPRT   85 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------------CCTTCEEECSCCTTSHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------------cCCCCeEEEeccCCCHHH
Confidence            45689999999999999999987433         689999999831               12467888 888654321


Q ss_pred             -------cCCCceeEEEEcCCCCCCCCcccCCch--------HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025141          171 -------SRKESYDVIIGDLADPIEGGPCYKLYT--------KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (257)
Q Consensus       171 -------~~~~~fDvIi~D~~~~~~~~p~~~L~t--------~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~  235 (257)
                             ...++||+|++|...... ..  +...        ..+++. +.+.|+|||.+++.....      .....+.
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lv~~~~~~------~~~~~~~  155 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNAT-GF--RDLDHDRLISLCLTLLSV-TPDILQPGGTFLCKTWAG------SQSRRLQ  155 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCC-SC--HHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEECCS------GGGHHHH
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCC-CC--cccCHHHHHHHHHHHHHH-HHHHhcCCCEEEEEecCC------ccHHHHH
Confidence                   123579999998742221 10  1111        367888 799999999999874221      2234666


Q ss_pred             HHHhhhCCceEEEe
Q 025141          236 NTLRQVFKCGCCAL  249 (257)
Q Consensus       236 ~~l~~~F~~v~~~~  249 (257)
                      ..++..|..+..+.
T Consensus       156 ~~l~~~f~~v~~~~  169 (196)
T 2nyu_A          156 RRLTEEFQNVRIIK  169 (196)
T ss_dssp             HHHHHHEEEEEEEC
T ss_pred             HHHHHHhcceEEEC
Confidence            77777787776654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.07  E-value=6.7e-10  Score=97.04  Aligned_cols=108  Identities=16%  Similarity=0.115  Sum_probs=80.4

Q ss_pred             CCCeEEEEeccc---hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--H-------
Q 025141          102 NPKTIFIMGGGE---GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--L-------  169 (257)
Q Consensus       102 ~~~~VL~IG~G~---G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l-------  169 (257)
                      ...+|||||||+   |.++..+.+..+..+|++||+||.+++.|++.+..      .++++++.+|+++.  +       
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~------~~~v~~~~~D~~~~~~~~~~~~~~  150 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK------DPNTAVFTADVRDPEYILNHPDVR  150 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT------CTTEEEEECCTTCHHHHHHSHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC------CCCeEEEEeeCCCchhhhccchhh
Confidence            457999999999   98877666654447999999999999999998742      36899999998753  1       


Q ss_pred             hcCC-CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          170 ESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       170 ~~~~-~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ...+ .+||+|++...-++  -+ .. ....+++. ++++|+|||.+++...
T Consensus       151 ~~~d~~~~d~v~~~~vlh~--~~-d~-~~~~~l~~-~~~~L~pGG~l~i~~~  197 (274)
T 2qe6_A          151 RMIDFSRPAAIMLVGMLHY--LS-PD-VVDRVVGA-YRDALAPGSYLFMTSL  197 (274)
T ss_dssp             HHCCTTSCCEEEETTTGGG--SC-TT-THHHHHHH-HHHHSCTTCEEEEEEE
T ss_pred             ccCCCCCCEEEEEechhhh--CC-cH-HHHHHHHH-HHHhCCCCcEEEEEEe
Confidence            1112 57999998764322  11 01 23578898 7999999999988653

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.07  E-value=2.5e-09  Score=97.24  Aligned_cols=99  Identities=12%  Similarity=0.156  Sum_probs=75.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC--------
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--------  173 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~--------  173 (257)
                      .+++|||+|||+|.++..+++.  ..+|++||+++.+++.|++++..++    -++++++.+|+.+++....        
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng----~~~v~~~~~d~~~~~~~~~~~~~~~~l  286 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANH----IDNVQIIRMAAEEFTQAMNGVREFNRL  286 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTT----CCSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEECCHHHHHHHHhhccccccc
Confidence            4578999999999999988874  4699999999999999999987663    2589999999999875321        


Q ss_pred             -------CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          174 -------ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       174 -------~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                             .+||+|++|++..   +    + ..++++     .|+++|.++.-.
T Consensus       287 ~~~~~~~~~fD~Vv~dPPr~---g----~-~~~~~~-----~l~~~g~ivyvs  326 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDPPRS---G----L-DSETEK-----MVQAYPRILYIS  326 (369)
T ss_dssp             GGSCGGGCCEEEEEECCCTT---C----C-CHHHHH-----HHTTSSEEEEEE
T ss_pred             cccccccCCCCEEEECcCcc---c----c-HHHHHH-----HHhCCCEEEEEE
Confidence                   3799999998642   1    1 234444     344777766544

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.06  E-value=3.7e-10  Score=98.96  Aligned_cols=110  Identities=11%  Similarity=0.100  Sum_probs=73.4

Q ss_pred             CCCeEEEEeccchHHHHHH----HhcCCCcEE--EEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-----
Q 025141          102 NPKTIFIMGGGEGSTAREI----LRHKTVEKV--VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-----  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l----~~~~~~~~v--~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-----  170 (257)
                      ++.+|||||||+|.++..+    +...+..+|  +++|+++++++.|++.+.... ....-++++..+|+.++..     
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS-NLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS-SCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc-CCCcceEEEEecchhhhhhhhccc
Confidence            4569999999999765433    222222444  999999999999999864221 0111234556777766542     


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       171 ~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ..+++||+|++...-.+...      -..++++ ++++|||||.+++..
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d------~~~~l~~-~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKD------IPATLKF-FHSLLGTNAKMLIIV  172 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSC------HHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             cCCCceeEEEEeeeeeecCC------HHHHHHH-HHHHcCCCcEEEEEE
Confidence            13578999998754322111      2468898 799999999998753

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.06  E-value=7.6e-10  Score=100.44  Aligned_cols=106  Identities=15%  Similarity=0.104  Sum_probs=81.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|||||||+|..+..+++..+..+++++|+ |.+++.|++++...+   ..+|++++.+|..+   ..+..||+|+
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---l~~~v~~~~~d~~~---~~p~~~D~v~  273 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG---LADRCEILPGDFFE---TIPDGADVYL  273 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTT---CCCSSCSEEE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC---cCCceEEeccCCCC---CCCCCceEEE
Confidence            4568999999999999999998755579999999 999999999876432   24799999999873   2233899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-+.  -+  .-....+++. +++.|+|||.+++.
T Consensus       274 ~~~vlh~--~~--d~~~~~~L~~-~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          274 IKHVLHD--WD--DDDVVRILRR-IATAMKPDSRLLVI  306 (369)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHTTCCTTCEEEEE
T ss_pred             hhhhhcc--CC--HHHHHHHHHH-HHHHcCCCCEEEEE
Confidence            8654211  11  0112368898 79999999998875

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.04  E-value=1.6e-09  Score=100.45  Aligned_cols=115  Identities=19%  Similarity=0.219  Sum_probs=85.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvI  179 (257)
                      .++.+|||+|||.|+.+..+++..+..+|+++|+++..++.+++++...+     -+++++.+|+.+.... ..++||+|
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~V  319 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-----MKATVKQGDGRYPSQWCGEQQFDRI  319 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-----CCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC-----CCeEEEeCchhhchhhcccCCCCEE
Confidence            44579999999999999999986544799999999999999999987542     2478999999876432 23689999


Q ss_pred             EEcCCCCCC----CCccc-------CC-----chHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          180 IGDLADPIE----GGPCY-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       180 i~D~~~~~~----~~p~~-------~L-----~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      ++|++-...    ..|..       .+     ...++++. +.+.|+|||+++....+
T Consensus       320 l~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~-a~~~LkpGG~lvystcs  376 (429)
T 1sqg_A          320 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA-IWPHLKTGGTLVYATCS  376 (429)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHH-HGGGEEEEEEEEEEESC
T ss_pred             EEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECC
Confidence            999873210    01100       00     11478888 79999999999876543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.04  E-value=2.3e-10  Score=98.62  Aligned_cols=97  Identities=16%  Similarity=0.124  Sum_probs=74.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|..+..+++ ++ .+|+++|+++.+++.+++.          ++++++.+|+.++ ....++||+|+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~-~~-~~v~gvD~s~~~~~~a~~~----------~~~~~~~~d~~~~-~~~~~~fD~v~   99 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALAN-QG-LFVYAVEPSIVMRQQAVVH----------PQVEWFTGYAENL-ALPDKSVDGVI   99 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHT-TT-CEEEEECSCHHHHHSSCCC----------TTEEEECCCTTSC-CSCTTCBSEEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHh-CC-CEEEEEeCCHHHHHHHHhc----------cCCEEEECchhhC-CCCCCCEeEEE
Confidence            5678999999999999999998 43 6999999999998877653          2789999998663 33457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-...  +    --..+++. +++.|| ||.+++.
T Consensus       100 ~~~~l~~~--~----~~~~~l~~-~~~~Lk-gG~~~~~  129 (261)
T 3ege_A          100 SILAIHHF--S----HLEKSFQE-MQRIIR-DGTIVLL  129 (261)
T ss_dssp             EESCGGGC--S----SHHHHHHH-HHHHBC-SSCEEEE
T ss_pred             EcchHhhc--c----CHHHHHHH-HHHHhC-CcEEEEE
Confidence            87642211  1    12578898 799999 9955543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.04  E-value=8.2e-10  Score=102.43  Aligned_cols=99  Identities=18%  Similarity=0.205  Sum_probs=79.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.++|||+|||+|.++..+++.  ..+|++||+++.+++.|++++..++    -. ++++.+|+.+++..   +||+|+
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ng----l~-v~~~~~d~~~~~~~---~fD~Vv  358 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINN----VD-AEFEVASDREVSVK---GFDTVI  358 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT----CC-EEEEECCTTTCCCT---TCSEEE
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcC----Cc-EEEEECChHHcCcc---CCCEEE
Confidence            45689999999999999999885  3699999999999999999987653    23 99999999887532   899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|++..   +     ...++++. ++ .|+|+|++++.+
T Consensus       359 ~dPPr~---g-----~~~~~~~~-l~-~l~p~givyvsc  387 (425)
T 2jjq_A          359 VDPPRA---G-----LHPRLVKR-LN-REKPGVIVYVSC  387 (425)
T ss_dssp             ECCCTT---C-----SCHHHHHH-HH-HHCCSEEEEEES
T ss_pred             EcCCcc---c-----hHHHHHHH-HH-hcCCCcEEEEEC
Confidence            998632   1     12456676 44 599999999865

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.04  E-value=1.2e-09  Score=99.46  Aligned_cols=112  Identities=11%  Similarity=0.065  Sum_probs=80.2

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ..++.+|||+|||+|.++.+++......+|+++|+|+.+++.|++++...+   .+++++++.+|+.+.. ...++||+|
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g---l~~~i~~~~~D~~~~~-~~~~~fD~I  290 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG---VLDKIKFIQGDATQLS-QYVDSVDFA  290 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT---CGGGCEEEECCGGGGG-GTCSCEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCCceEEEECChhhCC-cccCCcCEE
Confidence            456789999999999999999987543489999999999999999987543   2368999999998864 334789999


Q ss_pred             EEcCCCCCCCCcccCC--chHHHHHHHHcCcCCCCcEEEE
Q 025141          180 IGDLADPIEGGPCYKL--YTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L--~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ++|++-....+....+  .-.++++. ++++| +++.+++
T Consensus       291 i~npPyg~r~~~~~~~~~ly~~~~~~-l~r~l-~g~~~~i  328 (373)
T 3tm4_A          291 ISNLPYGLKIGKKSMIPDLYMKFFNE-LAKVL-EKRGVFI  328 (373)
T ss_dssp             EEECCCC------CCHHHHHHHHHHH-HHHHE-EEEEEEE
T ss_pred             EECCCCCcccCcchhHHHHHHHHHHH-HHHHc-CCeEEEE
Confidence            9998732211110111  12567787 68888 4333333

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.04  E-value=3e-10  Score=101.97  Aligned_cols=107  Identities=12%  Similarity=0.151  Sum_probs=81.4

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      +++|||||||+|..+..+++..+..+++++|+ |.+++.+++++...+   ..+|++++.+|..+.-...++.||+|++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~D~v~~~  255 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD---LGGRVEFFEKNLLDARNFEGGAADVVMLN  255 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT---CGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC---CCCceEEEeCCcccCcccCCCCccEEEEe
Confidence            78999999999999999998755579999999 999999999876432   24689999999876532134679999986


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ..-+.  .+  .-....+++. +++.|+|||.+++.
T Consensus       256 ~vlh~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~  286 (352)
T 3mcz_A          256 DCLHY--FD--AREAREVIGH-AAGLVKPGGALLIL  286 (352)
T ss_dssp             SCGGG--SC--HHHHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             ccccc--CC--HHHHHHHHHH-HHHHcCCCCEEEEE
Confidence            43211  01  0012578898 79999999988875

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.03  E-value=5e-10  Score=99.88  Aligned_cols=106  Identities=9%  Similarity=0.041  Sum_probs=80.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++.+|||||||+|..+..+++..+..+++++|+ |.+++.|++++...+   ..+|++++.+|..+   ..+..||+|++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~---~~p~~~D~v~~  241 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG---LSGRAQVVVGSFFD---PLPAGAGGYVL  241 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTS---CCCCSCSEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC---cCcCeEEecCCCCC---CCCCCCcEEEE
Confidence            358999999999999999988655579999999 999999999876432   24799999999863   22338999998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ...-+.  -+  .-....+++. +++.|+|||.+++..
T Consensus       242 ~~vlh~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          242 SAVLHD--WD--DLSAVAILRR-CAEAAGSGGVVLVIE  274 (332)
T ss_dssp             ESCGGG--SC--HHHHHHHHHH-HHHHHTTTCEEEEEE
T ss_pred             ehhhcc--CC--HHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence            653211  11  0012578898 799999999988753

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.03  E-value=1.1e-09  Score=91.76  Aligned_cols=100  Identities=13%  Similarity=0.070  Sum_probs=75.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCC-CCCCeEEEEcchHH-------------
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF-SDPRLELVINDARA-------------  167 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~-~~~rv~i~~~Da~~-------------  167 (257)
                      ++++||++|+|  ..+..+++.. ..+|+.||.|++..+.|++++...+  + ...+++++.+|+.+             
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~-~g~VvtvE~d~~~~~~ar~~l~~~g--~~~~~~I~~~~gda~~~~~wg~p~~~~~~  104 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELP-GKHVTSVESDRAWARMMKAWLAANP--PAEGTEVNIVWTDIGPTGDWGHPVSDAKW  104 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTST-TCEEEEEESCHHHHHHHHHHHHHSC--CCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred             CCCEEEEECch--HHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCCCceEEEEeCchhhhcccccccchhh
Confidence            67899999984  6777777754 4799999999999999999997543  1 04689999999653             


Q ss_pred             -----HHh---cC--CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          168 -----ELE---SR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       168 -----~l~---~~--~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                           +..   ..  .++||+|++|...           ..+++.. +.+.|+|||++++.
T Consensus       105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----------~~~~~~~-~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          105 RSYPDYPLAVWRTEGFRHPDVVLVDGRF-----------RVGCALA-TAFSITRPVTLLFD  153 (202)
T ss_dssp             GGTTHHHHGGGGCTTCCCCSEEEECSSS-----------HHHHHHH-HHHHCSSCEEEEET
T ss_pred             hhHHHHhhhhhccccCCCCCEEEEeCCC-----------chhHHHH-HHHhcCCCeEEEEe
Confidence                 221   12  3689999999631           1255555 46899999999873

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.03  E-value=6.4e-10  Score=95.90  Aligned_cols=109  Identities=12%  Similarity=0.068  Sum_probs=77.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHH------HHHHHHhhhhhccCCCCCCCeEEEEcc-hHHH-Hhc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEE------VVEFCKSYLVVNKEAFSDPRLELVIND-ARAE-LES  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~------vi~~a~~~~~~~~~~~~~~rv~i~~~D-a~~~-l~~  171 (257)
                      .++++||+||||+|..+..+++.. +..+|+++|+++.      +++.|++++...+   ..++++++.+| .+.. +..
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~  118 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP---LGDRLTVHFNTNLSDDLGPI  118 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST---TGGGEEEECSCCTTTCCGGG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC---CCCceEEEECChhhhccCCC
Confidence            466899999999999999999863 3469999999997      8999999876432   23689999998 2111 111


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       172 ~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ..++||+|++...-.....+      ..+.+. +++.++|||.+++..
T Consensus       119 ~~~~fD~v~~~~~l~~~~~~------~~~~~~-~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          119 ADQHFDRVVLAHSLWYFASA------NALALL-FKNMAAVCDHVDVAE  159 (275)
T ss_dssp             TTCCCSEEEEESCGGGSSCH------HHHHHH-HHHHTTTCSEEEEEE
T ss_pred             CCCCEEEEEEccchhhCCCH------HHHHHH-HHHHhCCCCEEEEEE
Confidence            34789999987542211011      235555 577777799988754

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.03  E-value=1.2e-09  Score=95.51  Aligned_cols=110  Identities=16%  Similarity=0.160  Sum_probs=75.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEEC-CHHHHHHHHhhhhhccC---CCC---CCCeEEEEcc---h-HHHH
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI-DEEVVEFCKSYLVVNKE---AFS---DPRLELVIND---A-RAEL  169 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEi-d~~vi~~a~~~~~~~~~---~~~---~~rv~i~~~D---a-~~~l  169 (257)
                      .++++||+||||+|.++..+++. +..+|+++|+ ++.+++.|+++...+..   .+.   .++++++..|   . ....
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  156 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ  156 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence            35679999999999999988886 4459999999 99999999999843210   011   1478887433   2 2222


Q ss_pred             hc-CCCceeEEEE-cCCCCCCCCcccCCchHHHHHHHHcCcCC---C--CcEEEEec
Q 025141          170 ES-RKESYDVIIG-DLADPIEGGPCYKLYTKSFYEFVVKPRLN---P--EGIFVTQA  219 (257)
Q Consensus       170 ~~-~~~~fDvIi~-D~~~~~~~~p~~~L~t~ef~~~~~~~~L~---p--gGil~~~~  219 (257)
                      .. ..++||+|++ |....    +   -....+++. +++.|+   |  ||++++-.
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~----~---~~~~~ll~~-l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSF----H---QAHDALLRS-VKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSC----G---GGHHHHHHH-HHHHBCCTTTCTTCEEEEEE
T ss_pred             hhccCCCCCEEEEeCcccC----h---HHHHHHHHH-HHHHhcccCCCCCCEEEEEE
Confidence            11 3578999987 55421    1   113567787 789999   9  99766543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.03  E-value=8.9e-10  Score=99.54  Aligned_cols=107  Identities=13%  Similarity=0.117  Sum_probs=80.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|..+..+++..+..+++++|+ +.+++.|++++...+   ..++++++.+|+.+.+   +..||+|+
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~v~  253 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG---LADRVTVAEGDFFKPL---PVTADVVL  253 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTSCC---SCCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC---CCCceEEEeCCCCCcC---CCCCCEEE
Confidence            3568999999999999999998755569999999 999999999876432   2358999999987532   33599999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-+.  .+  ......+++. +++.|+|||.+++..
T Consensus       254 ~~~vl~~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~e  287 (374)
T 1qzz_A          254 LSFVLLN--WS--DEDALTILRG-CVRALEPGGRLLVLD  287 (374)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EeccccC--CC--HHHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            8754211  01  0112478898 799999999877643

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.02  E-value=2.7e-10  Score=107.22  Aligned_cols=106  Identities=16%  Similarity=0.161  Sum_probs=79.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||||||+|.++..+++. +..+|++||+++ +++.|++.+..++   ..++++++.+|++++  ..+++||+|+
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~g---l~~~v~~~~~d~~~~--~~~~~fD~Iv  229 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNN---LTDRIVVIPGKVEEV--SLPEQVDIII  229 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTT---CTTTEEEEESCTTTC--CCSSCEEEEE
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcC---CCCcEEEEECchhhC--ccCCCeEEEE
Confidence            35689999999999999999885 457999999998 8899999876542   246899999998774  2246899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +++..... ..   --..+.+.. +++.|+|||++++.
T Consensus       230 s~~~~~~~-~~---e~~~~~l~~-~~~~LkpgG~li~~  262 (480)
T 3b3j_A          230 SEPMGYML-FN---ERMLESYLH-AKKYLKPSGNMFPT  262 (480)
T ss_dssp             CCCCHHHH-TC---HHHHHHHHH-GGGGEEEEEEEESC
T ss_pred             EeCchHhc-Cc---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence            97641100 00   012456677 68999999999854

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.02  E-value=9.2e-10  Score=94.64  Aligned_cols=99  Identities=17%  Similarity=0.270  Sum_probs=76.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+||+||||+|..+..+++. + .+++++|+++.+++.+++...        .  .++.+|+.+. ....++||+|+
T Consensus        53 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~l~~a~~~~~--------~--~~~~~d~~~~-~~~~~~fD~v~  119 (260)
T 2avn_A           53 KNPCRVLDLGGGTGKWSLFLQER-G-FEVVLVDPSKEMLEVAREKGV--------K--NVVEAKAEDL-PFPSGAFEAVL  119 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT-T-CEEEEEESCHHHHHHHHHHTC--------S--CEEECCTTSC-CSCTTCEEEEE
T ss_pred             CCCCeEEEeCCCcCHHHHHHHHc-C-CeEEEEeCCHHHHHHHHhhcC--------C--CEEECcHHHC-CCCCCCEEEEE
Confidence            46789999999999999999986 3 589999999999999998743        1  2778887653 23357899999


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +... .+.  .+  .  ...+++. +++.|+|||++++..
T Consensus       120 ~~~~~~~~--~~--~--~~~~l~~-~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          120 ALGDVLSY--VE--N--KDKAFSE-IRRVLVPDGLLIATV  152 (260)
T ss_dssp             ECSSHHHH--CS--C--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Ecchhhhc--cc--c--HHHHHHH-HHHHcCCCeEEEEEe
Confidence            8642 111  01  1  4678898 799999999999864

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.01  E-value=9.7e-11  Score=100.22  Aligned_cols=114  Identities=12%  Similarity=0.125  Sum_probs=79.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC-------------------------C
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-------------------------D  155 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~-------------------------~  155 (257)
                      .++++||+||||+|..+..+++... .+|+++|+++.+++.+++.+......++                         .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            3457999999999999988887532 5899999999999999988753210000                         0


Q ss_pred             CCe-EEEEcchHHHHhcCC---CceeEEEEcCCCCCCCCcccCC-chHHHHHHHHcCcCCCCcEEEEec
Q 025141          156 PRL-ELVINDARAELESRK---ESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       156 ~rv-~i~~~Da~~~l~~~~---~~fDvIi~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .++ +++..|+.+......   ++||+|++...-..  .+ .++ ....+++. ++++|+|||.+++..
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~--~~-~~~~~~~~~l~~-~~~~LkpgG~li~~~  198 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDA--AC-PDLPAYRTALRN-LGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH--HC-SSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhh--hc-CChHHHHHHHHH-HHhhCCCCcEEEEEe
Confidence            127 899999877533223   78999998653110  00 011 13578888 799999999988753

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.00  E-value=3.8e-09  Score=98.09  Aligned_cols=102  Identities=14%  Similarity=0.134  Sum_probs=80.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fD  177 (257)
                      .+..+|||+|||+|.++..+++.  ..+|+++|+++.+++.|++++..++    -++++++.+|+.+++..   ..++||
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~----~~~v~f~~~d~~~~l~~~~~~~~~fD  358 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNG----LQNVTFYHENLEEDVTKQPWAKNGFD  358 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCTTSCCSSSGGGTTCCS
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEECCHHHHhhhhhhhcCCCC
Confidence            35679999999999999999986  4699999999999999999987653    34899999999886643   236799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|++|++...       +  .++++. +. .++|++++.+.+
T Consensus       359 ~Vv~dPPr~g-------~--~~~~~~-l~-~~~p~~ivyvsc  389 (433)
T 1uwv_A          359 KVLLDPARAG-------A--AGVMQQ-II-KLEPIRIVYVSC  389 (433)
T ss_dssp             EEEECCCTTC-------C--HHHHHH-HH-HHCCSEEEEEES
T ss_pred             EEEECCCCcc-------H--HHHHHH-HH-hcCCCeEEEEEC
Confidence            9999986421       1  256666 44 488999888754

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.99  E-value=2.3e-09  Score=96.59  Aligned_cols=106  Identities=11%  Similarity=0.118  Sum_probs=79.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||||||+|..+..+++..+..+++++|+ |.+++.|++++...+   ..+|++++.+|+.+.   ....+|+|+
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~~D~v~  261 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE---SYPEADAVL  261 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT---CTTTEEEEECCTTTS---CCCCCSEEE
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC---CCCCEEEEeCccccC---CCCCCCEEE
Confidence            4568999999999999999998755579999999 999999999876432   245799999998764   223459999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-+.  .+  .-....+++. +++.|+|||.+++.
T Consensus       262 ~~~vlh~--~~--d~~~~~~l~~-~~~~L~pgG~l~i~  294 (359)
T 1x19_A          262 FCRILYS--AN--EQLSTIMCKK-AFDAMRSGGRLLIL  294 (359)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHTTCCTTCEEEEE
T ss_pred             Eechhcc--CC--HHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            8653211  11  0113578898 79999999988654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.99  E-value=9.9e-10  Score=95.55  Aligned_cols=105  Identities=10%  Similarity=0.045  Sum_probs=72.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~-~l~~~~~~fDvI  179 (257)
                      .++.+|||||||+|.++..+++. + .+|++||+++.+++.|++++...       .++....|... ......++||+|
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~-g-~~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~~~~fD~V  114 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALER-G-ASVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKELAGHFDFV  114 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGGTTCCSEE
T ss_pred             CCcCEEEEEeCcchHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccccCCCccEE
Confidence            45689999999999999999986 3 59999999999999999986422       23333333211 001224689999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +++..-... .+ .  -...+++. +.++| |||++++...
T Consensus       115 v~~~~l~~~-~~-~--~~~~~l~~-l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          115 LNDRLINRF-TT-E--EARRACLG-MLSLV-GSGTVRASVK  149 (261)
T ss_dssp             EEESCGGGS-CH-H--HHHHHHHH-HHHHH-TTSEEEEEEE
T ss_pred             EEhhhhHhC-CH-H--HHHHHHHH-HHHhC-cCcEEEEEec
Confidence            998542110 11 0  12457888 68899 9999998764

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.99  E-value=9.2e-10  Score=94.82  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=74.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++..+..+|+++|+++.+++.|++..         ++++++.+|+.+. ....++||+|+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~  153 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRL-PFSDTSMDAII  153 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSC-SBCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcchhhC-CCCCCceeEEE
Confidence            4668999999999999999998643469999999999999999863         4678899997653 23346899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...      +       .+++. +.+.|+|||.+++..
T Consensus       154 ~~~~------~-------~~l~~-~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          154 RIYA------P-------CKAEE-LARVVKPGGWVITAT  178 (269)
T ss_dssp             EESC------C-------CCHHH-HHHHEEEEEEEEEEE
T ss_pred             EeCC------h-------hhHHH-HHHhcCCCcEEEEEE
Confidence            7432      1       12567 688999999998765

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.98  E-value=6.9e-10  Score=99.79  Aligned_cols=131  Identities=15%  Similarity=0.123  Sum_probs=88.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCC-----cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTV-----EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~-----~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f  176 (257)
                      ++.+|||+|||+|.++..+++..+.     .+++++|+|+.++++|+.++...+     .+++++.+|+....  ..++|
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-----~~~~i~~~D~l~~~--~~~~f  202 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-----QKMTLLHQDGLANL--LVDPV  202 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEESCTTSCC--CCCCE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-----CCceEEECCCCCcc--ccCCc
Confidence            4579999999999999888875321     589999999999999999887553     26899999986532  34789


Q ss_pred             eEEEEcCCCCCCC--------Cc---ccC-CchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q 025141          177 DVIIGDLADPIEG--------GP---CYK-LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (257)
Q Consensus       177 DvIi~D~~~~~~~--------~p---~~~-L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F  242 (257)
                      |+|+++++-....        .+   ... .....|++. +.+.|+|||++++-....  +........+.+.|.+.+
T Consensus       203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~-~~~~Lk~gG~~~~v~p~~--~~~~~~~~~ir~~l~~~~  277 (344)
T 2f8l_A          203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQ-GMRYTKPGGYLFFLVPDA--MFGTSDFAKVDKFIKKNG  277 (344)
T ss_dssp             EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHH-HHHTEEEEEEEEEEEEGG--GGGSTTHHHHHHHHHHHE
T ss_pred             cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHH-HHHHhCCCCEEEEEECch--hcCCchHHHHHHHHHhCC
Confidence            9999998721100        00   000 112368888 789999999888765221  222222345555555543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.98  E-value=8.5e-10  Score=99.28  Aligned_cols=106  Identities=22%  Similarity=0.271  Sum_probs=79.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|..+..+++..+..+++++|+ +.+++.|++++...+   ..++++++.+|+.+.+   +..||+|+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~v~  254 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG---LSDRVDVVEGDFFEPL---PRKADAII  254 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT---CTTTEEEEECCTTSCC---SSCEEEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC---CCCceEEEeCCCCCCC---CCCccEEE
Confidence            3568999999999999999998655568999999 999999999876432   2358999999986532   34599998


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-+.  .+  .-....+++. +++.|+|||.+++.
T Consensus       255 ~~~vl~~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~  287 (360)
T 1tw3_A          255 LSFVLLN--WP--DHDAVRILTR-CAEALEPGGRILIH  287 (360)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             EcccccC--CC--HHHHHHHHHH-HHHhcCCCcEEEEE
Confidence            8653211  01  0112478998 79999999988764

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.97  E-value=5.9e-10  Score=99.30  Aligned_cols=102  Identities=19%  Similarity=0.218  Sum_probs=79.3

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~  183 (257)
                      ++|||||||+|..+..+++..+..+++++|+ |.+++.|++.+...+   ..++++++.+|..+.   .++.||+|++..
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~~D~v~~~~  241 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL---AGERVSLVGGDMLQE---VPSNGDIYLLSR  241 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH---HTTSEEEEESCTTTC---CCSSCSEEEEES
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC---CCCcEEEecCCCCCC---CCCCCCEEEEch
Confidence            8999999999999999998655579999999 999999999875332   236899999998762   236799999865


Q ss_pred             CCC-CCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          184 ADP-IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       184 ~~~-~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .-+ +  .+   -....+++. +++.|+|||.+++.
T Consensus       242 vl~~~--~~---~~~~~~l~~-~~~~L~pgG~l~i~  271 (334)
T 2ip2_A          242 IIGDL--DE---AASLRLLGN-CREAMAGDGRVVVI  271 (334)
T ss_dssp             CGGGC--CH---HHHHHHHHH-HHHHSCTTCEEEEE
T ss_pred             hccCC--CH---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence            421 2  11   112478888 79999999988875

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.97  E-value=6.8e-11  Score=102.32  Aligned_cols=114  Identities=14%  Similarity=0.112  Sum_probs=74.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC-------------------------CC
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-------------------------DP  156 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~-------------------------~~  156 (257)
                      ++++|||||||+|..+..+++. +..+|+++|+++.+++.|++++......++                         ..
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            4578999999999877665553 446899999999999999987643211110                         01


Q ss_pred             CeE-EEEcchHHHHh---cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          157 RLE-LVINDARAELE---SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       157 rv~-i~~~Da~~~l~---~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +++ ++.+|..+...   ...++||+|++...-... .+.. ---...++. ++++|||||.+++..
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i-~~~~-~~~~~~l~~-i~r~LKPGG~li~~~  197 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA-CCSL-DAYRAALCN-LASLLKPGGHLVTTV  197 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH-CSSH-HHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHh-cCCH-HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            233 78888766321   124689999997542110 0100 001357787 789999999998763

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.97  E-value=1.9e-10  Score=100.90  Aligned_cols=133  Identities=12%  Similarity=-0.039  Sum_probs=86.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~--~~Da~~~l~~~~~~fDv  178 (257)
                      .+.++|||||||+|.++..+++.   .+|++||+++ ++..+++. +..... ...+++++  .+|++++   .+++||+
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~-~~~~~~-~~~~v~~~~~~~D~~~l---~~~~fD~  151 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEK-PRLVET-FGWNLITFKSKVDVTKM---EPFQADT  151 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCC-CCCCCC-TTGGGEEEECSCCGGGC---CCCCCSE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhc-hhhhhh-cCCCeEEEeccCcHhhC---CCCCcCE
Confidence            35679999999999999999886   5899999999 43333221 111000 12278999  8998763   2578999


Q ss_pred             EEEcCCCCCCCCcc-cCCchHHHHHHHHcCcCCCCc--EEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEE
Q 025141          179 IIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCA  248 (257)
Q Consensus       179 Ii~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgG--il~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~  248 (257)
                      |++|.. .....+. .+.-+..+++. +.+.|+|||  .+++..-.|.   . ....++++.+++.|..+..+
T Consensus       152 Vvsd~~-~~~~~~~~d~~~~l~~L~~-~~r~LkpGG~~~~v~~~~~~~---~-~~~~~~l~~l~~~f~~v~v~  218 (276)
T 2wa2_A          152 VLCDIG-ESNPTAAVEASRTLTVLNV-ISRWLEYNQGCGFCVKVLNPY---S-CDVLEALMKMQARFGGGLIR  218 (276)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHH-HHHHHHHSTTCEEEEEESCCC---S-HHHHHHHHHHHHHHCCEEEC
T ss_pred             EEECCC-cCCCchhhhHHHHHHHHHH-HHHHhccCCCcEEEEEeCCCC---c-hhHHHHHHHHHHHcCCEEEE
Confidence            999976 2210110 00101236777 789999999  8888653341   2 22345667788888877765

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.97  E-value=5.9e-10  Score=99.08  Aligned_cols=106  Identities=14%  Similarity=0.180  Sum_probs=79.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+++..+..+++++|++ .+++.|++.+...+   ..++++++.+|+.+.  ..++.||+|+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~~~D~v~  237 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG---VASRYHTIAGSAFEV--DYGNDYDLVL  237 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT---CGGGEEEEESCTTTS--CCCSCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC---CCcceEEEecccccC--CCCCCCcEEE
Confidence            45689999999999999999987555699999999 99999999876432   235899999998663  2234599999


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +... ..+  ..   -....+++. +++.|+|||.+++.
T Consensus       238 ~~~~l~~~--~~---~~~~~~l~~-~~~~L~pgG~l~i~  270 (335)
T 2r3s_A          238 LPNFLHHF--DV---ATCEQLLRK-IKTALAVEGKVIVF  270 (335)
T ss_dssp             EESCGGGS--CH---HHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EcchhccC--CH---HHHHHHHHH-HHHhCCCCcEEEEE
Confidence            8533 211  00   112578888 79999999977664

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.97  E-value=1.4e-09  Score=96.07  Aligned_cols=99  Identities=13%  Similarity=0.051  Sum_probs=70.0

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHh-cCC-Cce
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELE-SRK-ESY  176 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~-~~~-~~f  176 (257)
                      ..+.++|||||||+|.++..++++ +..+|++||+++.+++.+.+.         ++++.... .|++..-. ..+ ..|
T Consensus        83 ~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~---------~~rv~~~~~~ni~~l~~~~l~~~~f  152 (291)
T 3hp7_A           83 SVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ---------DDRVRSMEQYNFRYAEPVDFTEGLP  152 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT---------CTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred             CccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh---------CcccceecccCceecchhhCCCCCC
Confidence            345689999999999999999886 457999999999999885442         34554332 34432211 112 349


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|++|..-..       +  ..++.. ++++|+|||.+++-
T Consensus       153 D~v~~d~sf~s-------l--~~vL~e-~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          153 SFASIDVSFIS-------L--NLILPA-LAKILVDGGQVVAL  184 (291)
T ss_dssp             SEEEECCSSSC-------G--GGTHHH-HHHHSCTTCEEEEE
T ss_pred             CEEEEEeeHhh-------H--HHHHHH-HHHHcCcCCEEEEE
Confidence            99999875221       1  456777 79999999988764

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.95  E-value=1.2e-09  Score=100.15  Aligned_cols=98  Identities=17%  Similarity=0.317  Sum_probs=70.1

Q ss_pred             CCCCCeEEEEecc------chHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHh
Q 025141          100 HPNPKTIFIMGGG------EGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELE  170 (257)
Q Consensus       100 ~~~~~~VL~IG~G------~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~  170 (257)
                      ..++.+||+||||      +|+.+..+++ +.+..+|++||+++.+.        .     ..++++++++|+.+  +..
T Consensus       214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-----~~~rI~fv~GDa~dlpf~~  280 (419)
T 3sso_A          214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-----DELRIRTIQGDQNDAEFLD  280 (419)
T ss_dssp             TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-----CBTTEEEEECCTTCHHHHH
T ss_pred             cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-----cCCCcEEEEecccccchhh
Confidence            3567899999999      4444444444 43457999999999962        1     24799999999866  331


Q ss_pred             ---cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          171 ---SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       171 ---~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                         ...++||+|++|....+   +    -...+|++ ++++|||||++++.
T Consensus       281 ~l~~~d~sFDlVisdgsH~~---~----d~~~aL~e-l~rvLKPGGvlVi~  323 (419)
T 3sso_A          281 RIARRYGPFDIVIDDGSHIN---A----HVRTSFAA-LFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHHHHCCEEEEEECSCCCH---H----HHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             hhhcccCCccEEEECCcccc---h----hHHHHHHH-HHHhcCCCeEEEEE
Confidence               12478999999854211   1    12568888 79999999999985

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.94  E-value=1e-09  Score=97.52  Aligned_cols=129  Identities=12%  Similarity=0.041  Sum_probs=84.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEEC----CHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhcCCCc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI----DEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKES  175 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEi----d~~vi~~a~~~~~~~~~~~~~~rv~i~~~-Da~~~l~~~~~~  175 (257)
                      .+.++|||||||+|..+..+++.   .+|++||+    ++..++.    ....  ....++++++.+ |++..   ..++
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~----~~~~--~~~~~~v~~~~~~D~~~l---~~~~  148 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEP----IPMS--TYGWNLVRLQSGVDVFFI---PPER  148 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCC----CCCC--STTGGGEEEECSCCTTTS---CCCC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHH----HHhh--hcCCCCeEEEeccccccC---CcCC
Confidence            34579999999999999999986   47999999    4432211    1111  112367999999 87654   2468


Q ss_pred             eeEEEEcCCCCCCCCcc-cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025141          176 YDVIIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC  247 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  247 (257)
                      ||+|++|..... ..+. .+.-+...++. +.+.|+|||.+++..-.+    .......++..+++.|..+..
T Consensus       149 fD~V~sd~~~~~-g~~~~d~~~~l~~L~~-~~~~LkpGG~~v~kv~~~----~~~~~~~~l~~l~~~f~~v~~  215 (305)
T 2p41_A          149 CDTLLCDIGESS-PNPTVEAGRTLRVLNL-VENWLSNNTQFCVKVLNP----YMSSVIEKMEALQRKHGGALV  215 (305)
T ss_dssp             CSEEEECCCCCC-SSHHHHHHHHHHHHHH-HHHHCCTTCEEEEEESCC----CSHHHHHHHHHHHHHHCCEEE
T ss_pred             CCEEEECCcccc-CcchhhHHHHHHHHHH-HHHHhCCCCEEEEEeCCC----CCchHHHHHHHHHHHcCCEEE
Confidence            999999975321 0000 00111246777 689999999999865332    123345677778888877664

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.94  E-value=1.7e-09  Score=90.50  Aligned_cols=92  Identities=13%  Similarity=0.070  Sum_probs=71.8

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      +.+||+||||+|..+..+++.      +++|+++.+++.+++.           +++++.+|+.+. ....++||+|++.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~v~~~  109 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-----------GVFVLKGTAENL-PLKDESFDFALMV  109 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-----------TCEEEECBTTBC-CSCTTCEEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-----------CCEEEEcccccC-CCCCCCeeEEEEc
Confidence            789999999999999987663      9999999999999975           578888887653 2334689999987


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ..-..  .+    -...+++. +++.|+|||.+++..
T Consensus       110 ~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~i~~  139 (219)
T 1vlm_A          110 TTICF--VD----DPERALKE-AYRILKKGGYLIVGI  139 (219)
T ss_dssp             SCGGG--SS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             chHhh--cc----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence            54211  11    12578888 799999999998764

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.93  E-value=2.2e-08  Score=89.08  Aligned_cols=115  Identities=14%  Similarity=0.039  Sum_probs=81.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~~fD  177 (257)
                      .+..+|||+|||.|+.+..++.. .+..+|+++|+++..++.+++++...+    -.+++++.+|+.++....  ..+||
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~fD  176 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG----VSCCELAEEDFLAVSPSDPRYHEVH  176 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCChHhcCccccccCCCC
Confidence            34579999999999999998875 334699999999999999999987542    257999999998764321  15799


Q ss_pred             EEEEcCCCCCC----CCcc---------cCC-----chHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          178 VIIGDLADPIE----GGPC---------YKL-----YTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       178 vIi~D~~~~~~----~~p~---------~~L-----~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      .|++|++-...    ..|.         ..+     ...++++. +.+.|+ ||+++..+.+
T Consensus       177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCH-ALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHH-HTTCTT-CCEEEEEESC
T ss_pred             EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHH-HHhccC-CCEEEEECCC
Confidence            99999873111    0110         011     12356776 567776 9988865543

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.93  E-value=6.9e-10  Score=101.75  Aligned_cols=123  Identities=21%  Similarity=0.266  Sum_probs=83.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      +++.+|||+|||+|.++..++++. +..+++++|+|+.+++.|             ++++++.+|..++.  ..++||+|
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------------~~~~~~~~D~~~~~--~~~~fD~I  102 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------------PWAEGILADFLLWE--PGEAFDLI  102 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------------TTEEEEESCGGGCC--CSSCEEEE
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------------CCCcEEeCChhhcC--ccCCCCEE
Confidence            356799999999999999998752 346999999999998665             47899999988753  24689999


Q ss_pred             EEcCCCCCCCC---------ccc-CC-------------chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHH
Q 025141          180 IGDLADPIEGG---------PCY-KL-------------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN  236 (257)
Q Consensus       180 i~D~~~~~~~~---------p~~-~L-------------~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~  236 (257)
                      ++++|-.....         ... ..             ....|++. +.+.|+|||.+++-....  +........+.+
T Consensus       103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~-~~~~Lk~~G~~~~i~p~~--~l~~~~~~~lr~  179 (421)
T 2ih2_A          103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEK-AVRLLKPGGVLVFVVPAT--WLVLEDFALLRE  179 (421)
T ss_dssp             EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHH-HHHHEEEEEEEEEEEEGG--GGTCGGGHHHHH
T ss_pred             EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHH-HHHHhCCCCEEEEEEChH--HhcCccHHHHHH
Confidence            99986311000         000 00             11367888 789999999888754221  222222344555


Q ss_pred             HHhhh
Q 025141          237 TLRQV  241 (257)
Q Consensus       237 ~l~~~  241 (257)
                      .+.+.
T Consensus       180 ~l~~~  184 (421)
T 2ih2_A          180 FLARE  184 (421)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            55544

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.92  E-value=4.6e-09  Score=103.58  Aligned_cols=108  Identities=20%  Similarity=0.192  Sum_probs=80.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhh--ccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVV--NKEAFSDPRLELVINDARAELESRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~--~~~~~~~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      .++.+|||||||+|.++..+++.. +..+|++||+++.+++.|++.+..  +......++++++.+|+.+. ....++||
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL-p~~d~sFD  798 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF-DSRLHDVD  798 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC-CTTSCSCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC-CcccCCee
Confidence            367899999999999999999874 346999999999999999986542  11111346899999998774 33457899


Q ss_pred             EEEEcCCCCCCCCcccCCch---HHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t---~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|++...-       .++-.   ..+++. +.+.|+|| .+++.
T Consensus       799 lVV~~eVL-------eHL~dp~l~~~L~e-I~RvLKPG-~LIIS  833 (950)
T 3htx_A          799 IGTCLEVI-------EHMEEDQACEFGEK-VLSLFHPK-LLIVS  833 (950)
T ss_dssp             EEEEESCG-------GGSCHHHHHHHHHH-HHHTTCCS-EEEEE
T ss_pred             EEEEeCch-------hhCChHHHHHHHHH-HHHHcCCC-EEEEE
Confidence            99986432       12222   347888 79999999 55543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.91  E-value=3.1e-10  Score=98.94  Aligned_cols=134  Identities=12%  Similarity=-0.046  Sum_probs=86.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~--~~Da~~~l~~~~~~fDv  178 (257)
                      .+..+|||||||+|.++..+++.   .+|++||+++ ++..+++. +..... ...++.++  .+|++++   .+++||+
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~-~~~~~~-~~~~v~~~~~~~D~~~l---~~~~fD~  143 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEV-PRITES-YGWNIVKFKSRVDIHTL---PVERTDV  143 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCC-CCCCCB-TTGGGEEEECSCCTTTS---CCCCCSE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhh-hhhhhc-cCCCeEEEecccCHhHC---CCCCCcE
Confidence            45679999999999999999886   5899999998 32222211 111000 11278888  8898763   2578999


Q ss_pred             EEEcCCCCCCCCcc-cCCchHHHHHHHHcCcCCCCc--EEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEe
Q 025141          179 IIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCAL  249 (257)
Q Consensus       179 Ii~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgG--il~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~  249 (257)
                      |++|.. .....+. .+.-+..+++. +.+.|+|||  .+++..-.|.   . ....+++..+++.|..+....
T Consensus       144 V~sd~~-~~~~~~~~d~~~~l~~L~~-~~r~LkpGG~~~fv~kv~~~~---~-~~~~~~l~~l~~~f~~v~~~k  211 (265)
T 2oxt_A          144 IMCDVG-ESSPKWSVESERTIKILEL-LEKWKVKNPSADFVVKVLCPY---S-VEVMERLSVMQRKWGGGLVRN  211 (265)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHH-HHHHHHHCTTCEEEEEESCTT---S-HHHHHHHHHHHHHHCCEEECC
T ss_pred             EEEeCc-ccCCccchhHHHHHHHHHH-HHHHhccCCCeEEEEEeCCCC---C-hhHHHHHHHHHHHcCCEEEEE
Confidence            999976 2210110 00111236777 689999999  9988653331   2 223466677788887776654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.90  E-value=2.8e-09  Score=92.34  Aligned_cols=141  Identities=18%  Similarity=0.077  Sum_probs=96.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +.|.+|||||||.|-++..+....+..+++++|+|+.+++++++++..++     .+.++.+.|...  ....++||+|+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g-----~~~~~~v~D~~~--~~p~~~~DvaL  203 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN-----VPHRTNVADLLE--DRLDEPADVTL  203 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT-----CCEEEEECCTTT--SCCCSCCSEEE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEeeecc--cCCCCCcchHH
Confidence            66899999999999999988887677899999999999999999998653     457888888533  23568899998


Q ss_pred             EcCCCCCCCCcccCCch---HHHHHHHHcCcCCCCcEEEEec----CCCCCCCChHHHHHHHHHHhhhCCceEEEeecCc
Q 025141          181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQA----GPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSY  253 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t---~ef~~~~~~~~L~pgGil~~~~----~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~  253 (257)
                      +...-|       .|-.   ...| . +.+.|+++|+++-.-    +.+...........+.+.+++....+.-..+++.
T Consensus       204 ~lkti~-------~Le~q~kg~g~-~-ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~nE  274 (281)
T 3lcv_B          204 LLKTLP-------CLETQQRGSGW-E-VIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIGNE  274 (281)
T ss_dssp             ETTCHH-------HHHHHSTTHHH-H-HHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             HHHHHH-------HhhhhhhHHHH-H-HHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeecCe
Confidence            875421       1111   1344 4 577899999887421    1111011112222333445556777888888887


Q ss_pred             cccC
Q 025141          254 SFFC  257 (257)
Q Consensus       254 ~~~~  257 (257)
                      .+|+
T Consensus       275 l~y~  278 (281)
T 3lcv_B          275 LIYV  278 (281)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            7763

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.88  E-value=1.4e-10  Score=101.31  Aligned_cols=112  Identities=15%  Similarity=0.151  Sum_probs=72.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC--------------C------------
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--------------D------------  155 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~--------------~------------  155 (257)
                      ++.+|||||||+|..+..+.+.. ..+|+++|+++.+++.|++++......+.              .            
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccC-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            56899999999999544333333 35999999999999999986542100000              0            


Q ss_pred             CCeEEEEcchHHHHh-----cCCCceeEEEEcCCCCCCCCcccCC-chHHHHHHHHcCcCCCCcEEEEe
Q 025141          156 PRLELVINDARAELE-----SRKESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       156 ~rv~i~~~Da~~~l~-----~~~~~fDvIi~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ..++++..|+.+.+.     ..+++||+|++...-.+. .+  .+ --..+++. ++++|||||.+++.
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~--~~~~~~~~l~~-~~r~LkpGG~l~~~  214 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAV-SP--DLASFQRALDH-ITTLLRPGGHLLLI  214 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHH-CS--SHHHHHHHHHH-HHTTEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhh-cC--CHHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            025677778776332     123569999987542110 00  01 12568888 79999999998874

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.87  E-value=1.2e-08  Score=89.13  Aligned_cols=128  Identities=13%  Similarity=0.106  Sum_probs=81.2

Q ss_pred             CCCeEEEEeccc--hHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH---hcC--C
Q 025141          102 NPKTIFIMGGGE--GSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ESR--K  173 (257)
Q Consensus       102 ~~~~VL~IG~G~--G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l---~~~--~  173 (257)
                      ..++|||||||.  +..+.++++ ..+..+|++||+||.|++.||+.+...    ...+++++.+|.++.-   ...  .
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~----~~~~~~~v~aD~~~~~~~l~~~~~~  153 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST----PEGRTAYVEADMLDPASILDAPELR  153 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC----SSSEEEEEECCTTCHHHHHTCHHHH
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC----CCCcEEEEEecccChhhhhcccccc
Confidence            457999999997  333444443 334579999999999999999987532    1357999999998752   111  2


Q ss_pred             Ccee-----EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025141          174 ESYD-----VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (257)
Q Consensus       174 ~~fD-----vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~  239 (257)
                      +.||     .|++...-++.  +. .---...++. +.+.|+|||+|++...++.  ..+...+.+.+..+
T Consensus       154 ~~~D~~~p~av~~~avLH~l--~d-~~~p~~~l~~-l~~~L~PGG~Lvls~~~~d--~~p~~~~~~~~~~~  218 (277)
T 3giw_A          154 DTLDLTRPVALTVIAIVHFV--LD-EDDAVGIVRR-LLEPLPSGSYLAMSIGTAE--FAPQEVGRVAREYA  218 (277)
T ss_dssp             TTCCTTSCCEEEEESCGGGS--CG-GGCHHHHHHH-HHTTSCTTCEEEEEEECCT--TSHHHHHHHHHHHH
T ss_pred             cccCcCCcchHHhhhhHhcC--Cc-hhhHHHHHHH-HHHhCCCCcEEEEEeccCC--CCHHHHHHHHHHHH
Confidence            3455     45555543331  10 1001467888 7999999999998754432  23343444444443

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.84  E-value=7.7e-09  Score=93.36  Aligned_cols=103  Identities=18%  Similarity=0.160  Sum_probs=78.7

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ..++|||||||.|..+..+++..+..++++.|+ |.+++.|+++....    ..+|++++.+|.++   .....+|+|++
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~----~~~rv~~~~gD~~~---~~~~~~D~~~~  250 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ----EEEQIDFQEGDFFK---DPLPEADLYIL  250 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC------CCSEEEEESCTTT---SCCCCCSEEEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc----ccCceeeecCcccc---CCCCCceEEEe
Confidence            457999999999999999999766678999998 99999999987643    35799999999753   34466899888


Q ss_pred             cCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      -.. ..|   +  .-....+++. +++.|+|||.+++.
T Consensus       251 ~~vlh~~---~--d~~~~~iL~~-~~~al~pgg~lli~  282 (353)
T 4a6d_A          251 ARVLHDW---A--DGKCSHLLER-IYHTCKPGGGILVI  282 (353)
T ss_dssp             ESSGGGS---C--HHHHHHHHHH-HHHHCCTTCEEEEE
T ss_pred             eeecccC---C--HHHHHHHHHH-HHhhCCCCCEEEEE
Confidence            643 222   1  0113567898 79999999987764

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.83  E-value=8.7e-09  Score=92.57  Aligned_cols=103  Identities=19%  Similarity=0.133  Sum_probs=73.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ++..+|||||||+|..+..+++..+..+++++|+ +.++.  ++.....+   ..+|++++.+|+.+   ..+ .||+|+
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~---~~~~v~~~~~d~~~---~~p-~~D~v~  252 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPD---VAGRWKVVEGDFLR---EVP-HADVHV  252 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGG---GTTSEEEEECCTTT---CCC-CCSEEE
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccC---CCCCeEEEecCCCC---CCC-CCcEEE
Confidence            4568999999999999999998655678999999 55655  44333221   24689999999863   223 899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-+.  .+  ......++++ +++.|||||.+++.
T Consensus       253 ~~~vlh~--~~--d~~~~~~L~~-~~~~LkpgG~l~i~  285 (348)
T 3lst_A          253 LKRILHN--WG--DEDSVRILTN-CRRVMPAHGRVLVI  285 (348)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHTCCTTCEEEEE
T ss_pred             EehhccC--CC--HHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            8654211  11  0112478999 79999999998875

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.82  E-value=3.8e-09  Score=90.15  Aligned_cols=99  Identities=13%  Similarity=0.053  Sum_probs=67.8

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--cCCC-ce
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKE-SY  176 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~--~~~~-~f  176 (257)
                      .+.+++|||||||+|.++..+++. +..+|++||+++.+++.+++..         +++......-..++.  .... .|
T Consensus        35 ~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  104 (232)
T 3opn_A           35 EINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSD---------ERVVVMEQFNFRNAVLADFEQGRP  104 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTC---------TTEEEECSCCGGGCCGGGCCSCCC
T ss_pred             CCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhC---------ccccccccceEEEeCHhHcCcCCC
Confidence            345679999999999999999987 4469999999999999988743         333322211112221  1122 36


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |.+..|..-.       .+  ..+++. ++++|+|||.+++-
T Consensus       105 d~~~~D~v~~-------~l--~~~l~~-i~rvLkpgG~lv~~  136 (232)
T 3opn_A          105 SFTSIDVSFI-------SL--DLILPP-LYEILEKNGEVAAL  136 (232)
T ss_dssp             SEEEECCSSS-------CG--GGTHHH-HHHHSCTTCEEEEE
T ss_pred             CEEEEEEEhh-------hH--HHHHHH-HHHhccCCCEEEEE
Confidence            7777775421       11  456788 79999999988874

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.82  E-value=8.7e-09  Score=90.88  Aligned_cols=120  Identities=17%  Similarity=0.269  Sum_probs=78.1

Q ss_pred             CCCCeEEEEec------cchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE-EEcchHHHHhcC
Q 025141          101 PNPKTIFIMGG------GEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAELESR  172 (257)
Q Consensus       101 ~~~~~VL~IG~------G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i-~~~Da~~~l~~~  172 (257)
                      ++..+||||||      |.|+  ..+++ .++..+|++||+++.        .         +++++ +.+|+.+.-  .
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---------~~v~~~i~gD~~~~~--~  120 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---------SDADSTLIGDCATVH--T  120 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---------CSSSEEEESCGGGCC--C
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---------CCCEEEEECccccCC--c
Confidence            45679999999      4476  33333 333469999999998        1         26788 999987642  2


Q ss_pred             CCceeEEEEcCCCCCC-----CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceE
Q 025141          173 KESYDVIIGDLADPIE-----GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGC  246 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~-----~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~  246 (257)
                      .++||+|++|...+..     ......-+-.+.++. +++.|+|||.+++..-..   ..   ..++.+.+++. |..+.
T Consensus       121 ~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~-a~r~LkpGG~~v~~~~~~---~~---~~~l~~~l~~~GF~~v~  193 (290)
T 2xyq_A          121 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGF-IKQKLALGGSIAVKITEH---SW---NADLYKLMGHFSWWTAF  193 (290)
T ss_dssp             SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHH-HHHHEEEEEEEEEEECSS---SC---CHHHHHHHTTEEEEEEE
T ss_pred             cCcccEEEEcCCccccccccccccchHHHHHHHHHH-HHHhcCCCcEEEEEEecc---CC---HHHHHHHHHHcCCcEEE
Confidence            3689999999753221     000001112467888 799999999999854211   11   23666777877 87776


Q ss_pred             EE
Q 025141          247 CA  248 (257)
Q Consensus       247 ~~  248 (257)
                      ..
T Consensus       194 ~~  195 (290)
T 2xyq_A          194 VT  195 (290)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.81  E-value=2.2e-09  Score=98.53  Aligned_cols=103  Identities=18%  Similarity=0.212  Sum_probs=73.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|||||||+|.++..+++. + .+|+++|+++.+++.|++. ...      ....+...+..+.+....++||+|+
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~-g-~~v~gvD~s~~~~~~a~~~-~~~------~~~~~~~~~~~~~l~~~~~~fD~I~  176 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA-G-VRHLGFEPSSGVAAKAREK-GIR------VRTDFFEKATADDVRRTEGPANVIY  176 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT-T-CEEEEECCCHHHHHHHHTT-TCC------EECSCCSHHHHHHHHHHHCCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc-C-CcEEEECCCHHHHHHHHHc-CCC------cceeeechhhHhhcccCCCCEEEEE
Confidence            35679999999999999999986 3 4999999999999999986 111      1111222232333333457899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-..  -+    --..+++. ++++|+|||++++..
T Consensus       177 ~~~vl~h--~~----d~~~~l~~-~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          177 AANTLCH--IP----YVQSVLEG-VDALLAPDGVFVFED  208 (416)
T ss_dssp             EESCGGG--CT----THHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECChHHh--cC----CHHHHHHH-HHHHcCCCeEEEEEe
Confidence            8754211  11    13578999 799999999999864

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.81  E-value=3.4e-09  Score=91.91  Aligned_cols=79  Identities=11%  Similarity=0.077  Sum_probs=65.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCH-------HHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDE-------EVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-  173 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~-------~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-  173 (257)
                      +..+|||+|||+|..+..+++. + .+|+++|+++       ..++.|+++...++   ...+++++.+|+.+++.... 
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~-g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~---~~~ri~~~~~d~~~~l~~~~~  157 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASL-G-LTVTAFEQHPAVACLLSDGIRRALLNPETQD---TAARINLHFGNAAEQMPALVK  157 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHT-T-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHH---HHTTEEEEESCHHHHHHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHh-C-CEEEEEECChhhhHHHHHHHHHHHhHHHhhC---CccCeEEEECCHHHHHHhhhc
Confidence            4579999999999999999985 3 5899999999       99999998876542   12479999999999876432 


Q ss_pred             --CceeEEEEcCCC
Q 025141          174 --ESYDVIIGDLAD  185 (257)
Q Consensus       174 --~~fDvIi~D~~~  185 (257)
                        ++||+|++|++-
T Consensus       158 ~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          158 TQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             cCCCccEEEECCCC
Confidence              689999999864

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.80  E-value=7.7e-09  Score=88.70  Aligned_cols=141  Identities=14%  Similarity=0.101  Sum_probs=93.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +.|.+|||||||.|-++..+.   +..+++++|||+.+++.+++++...     .+++++.+.|...-  ..+++||+|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~-----g~~~~~~v~D~~~~--~~~~~~DvvL  173 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK-----DWDFTFALQDVLCA--PPAEAGDLAL  173 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT-----TCEEEEEECCTTTS--CCCCBCSEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc-----CCCceEEEeecccC--CCCCCcchHH
Confidence            678999999999999998776   4579999999999999999998765     36889999996432  3457999997


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec----CCCCCCCChHHHHHHHHHHhhhCCceEEEeecCcccc
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA----GPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFF  256 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~----~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~~  256 (257)
                      +...-|..    .+......+ . +.+.|+++|+++-.-    +.+...........+.+.+++-+..+.-+.+++..||
T Consensus       174 llk~lh~L----E~q~~~~~~-~-ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~nEl~~  247 (253)
T 3frh_A          174 IFKLLPLL----EREQAGSAM-A-LLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIGTELIY  247 (253)
T ss_dssp             EESCHHHH----HHHSTTHHH-H-HHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEETTEEEE
T ss_pred             HHHHHHHh----hhhchhhHH-H-HHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecCceEEE
Confidence            76431110    011112334 3 456899999887421    1111011122233444555666778888888888877


Q ss_pred             C
Q 025141          257 C  257 (257)
Q Consensus       257 ~  257 (257)
                      +
T Consensus       248 ~  248 (253)
T 3frh_A          248 L  248 (253)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.79  E-value=4.2e-09  Score=97.05  Aligned_cols=79  Identities=13%  Similarity=0.136  Sum_probs=65.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi  180 (257)
                      ..++|||+|||+|..+..+++. . .+|++||+|+.+++.|++++.....+  -.+++++++|+.+++... .++||+|+
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~-g-~~V~~VD~s~~~l~~Ar~N~~~~~~g--l~~i~~i~~Da~~~L~~~~~~~fDvV~  168 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK-A-SQGIYIERNDETAVAARHNIPLLLNE--GKDVNILTGDFKEYLPLIKTFHPDYIY  168 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHHHHHSCT--TCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhc-C-CEEEEEECCHHHHHHHHHhHHHhccC--CCcEEEEECcHHHhhhhccCCCceEEE
Confidence            3689999999999999998875 3 69999999999999999998754101  158999999999987642 35799999


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      +|++
T Consensus       169 lDPP  172 (410)
T 3ll7_A          169 VDPA  172 (410)
T ss_dssp             ECCE
T ss_pred             ECCC
Confidence            9997

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.78  E-value=1.5e-08  Score=88.88  Aligned_cols=76  Identities=18%  Similarity=0.378  Sum_probs=62.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|.++..+++..  .+|++||+|+.+++.+++.+...+   ..++++++.+|+.+.   .-..||+|+
T Consensus        27 ~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~D~~~~---~~~~fD~vv   98 (285)
T 1zq9_A           27 RPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTP---VASKLQVLVGDVLKT---DLPFFDTCV   98 (285)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEESCTTTS---CCCCCSEEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcceecc---cchhhcEEE
Confidence            456799999999999999999863  599999999999999999875321   125899999998764   224799999


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      ++++
T Consensus        99 ~nlp  102 (285)
T 1zq9_A           99 ANLP  102 (285)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9875

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.78  E-value=4.3e-08  Score=89.97  Aligned_cols=111  Identities=11%  Similarity=0.047  Sum_probs=76.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC--------------------------------------CcEEEEEECCHHHHHHH
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT--------------------------------------VEKVVMCDIDEEVVEFC  142 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~--------------------------------------~~~v~~VEid~~vi~~a  142 (257)
                      .....|||.+||+|+++.+++....                                      ..+|+++|+|+.+++.|
T Consensus       200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A  279 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA  279 (393)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence            3457899999999999988876421                                      13699999999999999


Q ss_pred             HhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCC--CcEEEEec
Q 025141          143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQA  219 (257)
Q Consensus       143 ~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p--gGil~~~~  219 (257)
                      ++++...+   .+.+++++.+|+.+...  .++||+|++|+|-....+.  .-...++|+. +.+.|++  ||.+.+-+
T Consensus       280 r~Na~~~g---l~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPYg~rl~~--~~~l~~ly~~-lg~~lk~~~g~~~~iit  350 (393)
T 3k0b_A          280 KQNAVEAG---LGDLITFRQLQVADFQT--EDEYGVVVANPPYGERLED--EEAVRQLYRE-MGIVYKRMPTWSVYVLT  350 (393)
T ss_dssp             HHHHHHTT---CTTCSEEEECCGGGCCC--CCCSCEEEECCCCCCSHHH--HHHHHHHHHH-HHHHHHTCTTCEEEEEE
T ss_pred             HHHHHHcC---CCCceEEEECChHhCCC--CCCCCEEEECCCCccccCC--chhHHHHHHH-HHHHHhcCCCCEEEEEE
Confidence            99987553   23579999999988642  3689999999874321110  0011245554 3444443  77666644

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.77  E-value=6.3e-09  Score=96.81  Aligned_cols=113  Identities=14%  Similarity=0.052  Sum_probs=79.7

Q ss_pred             CCCeEEEEeccchHHHHHHHhcC-------------CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 025141          102 NPKTIFIMGGGEGSTAREILRHK-------------TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~-------------~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~  168 (257)
                      ...+|||.|||+|+++..+.++-             ...+++++|+|+.++++|+.++.+.+  ....+.+++++|+...
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g--~~~~~~~i~~gD~l~~  248 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG--IGTDRSPIVCEDSLEK  248 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT--CCSSCCSEEECCTTTS
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC--CCcCCCCEeeCCCCCC
Confidence            34689999999999998877641             12579999999999999999876553  1112678999997654


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccC-----------CchHHHHHHHHcCcCCCCcEEEEec
Q 025141          169 LESRKESYDVIIGDLADPIEGGPCYK-----------LYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~~~~~~~p~~~-----------L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .  ..++||+|+.++|-.........           -....|++. +.+.|+|||.+++-.
T Consensus       249 ~--~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~-~~~~Lk~gG~~a~V~  307 (445)
T 2okc_A          249 E--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQH-MMLMLKTGGRAAVVL  307 (445)
T ss_dssp             C--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             c--ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHH-HHHHhccCCEEEEEE
Confidence            2  23589999999873211000000           012478998 689999999887643

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.76  E-value=3.3e-08  Score=87.58  Aligned_cols=79  Identities=29%  Similarity=0.347  Sum_probs=64.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---HhcCC-Cce
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESRK-ESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---l~~~~-~~f  176 (257)
                      .+..+|||+|||+|+.+..+++..+..+|+++|+|+.+++.|++++...+     ++++++++|+.+.   +.... .+|
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-----~~v~~v~~d~~~l~~~l~~~g~~~~   99 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-----DRVSLFKVSYREADFLLKTLGIEKV   99 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-----TTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEECCHHHHHHHHHhcCCCCC
Confidence            35579999999999999999987445799999999999999999886542     5899999998764   22222 579


Q ss_pred             eEEEEcCC
Q 025141          177 DVIIGDLA  184 (257)
Q Consensus       177 DvIi~D~~  184 (257)
                      |.|++|++
T Consensus       100 D~Vl~D~g  107 (301)
T 1m6y_A          100 DGILMDLG  107 (301)
T ss_dssp             EEEEEECS
T ss_pred             CEEEEcCc
Confidence            99999985

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.76  E-value=2.2e-08  Score=96.04  Aligned_cols=77  Identities=17%  Similarity=0.306  Sum_probs=64.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvI  179 (257)
                      .+|.+|||||||+|.++..+++. + .+||+||+++..++.|+.+....+    .-+++++++|+.+.... .+++||+|
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~-g-a~V~giD~~~~~i~~a~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~v  138 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK-G-ATIVGIDFQQENINVCRALAEENP----DFAAEFRVGRIEEVIAALEEGEFDLA  138 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTST----TSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC-C-CEEEEECCCHHHHHHHHHHHHhcC----CCceEEEECCHHHHhhhccCCCccEE
Confidence            46789999999999999999996 4 589999999999999999876431    24789999999998765 45789999


Q ss_pred             EEcC
Q 025141          180 IGDL  183 (257)
Q Consensus       180 i~D~  183 (257)
                      ++--
T Consensus       139 ~~~e  142 (569)
T 4azs_A          139 IGLS  142 (569)
T ss_dssp             EEES
T ss_pred             EECc
Confidence            8753

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.74  E-value=2.2e-08  Score=88.55  Aligned_cols=75  Identities=17%  Similarity=0.344  Sum_probs=62.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+||+||||+|.++..+++.  ..+|++||+|+.+++.+++.+..      .++++++.+|+.++- -....||+|+
T Consensus        49 ~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~------~~~v~vi~gD~l~~~-~~~~~fD~Iv  119 (295)
T 3gru_A           49 TKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL------YNNIEIIWGDALKVD-LNKLDFNKVV  119 (295)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH------CSSEEEEESCTTTSC-GGGSCCSEEE
T ss_pred             CCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc------CCCeEEEECchhhCC-cccCCccEEE
Confidence            35679999999999999999986  36999999999999999998762      368999999997742 1224699999


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      .+++
T Consensus       120 ~NlP  123 (295)
T 3gru_A          120 ANLP  123 (295)
T ss_dssp             EECC
T ss_pred             EeCc
Confidence            8865

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.73  E-value=7.2e-09  Score=93.96  Aligned_cols=98  Identities=20%  Similarity=0.196  Sum_probs=73.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+|||||||+|..+..+++..+..+++++|+ |.+++.++++          ++++++.+|+.+.   .+. ||+|+
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~---~~~-~D~v~  272 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL----------SGIEHVGGDMFAS---VPQ-GDAMI  272 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------TTEEEEECCTTTC---CCC-EEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc----------CCCEEEeCCcccC---CCC-CCEEE
Confidence            4568999999999999999998755568999999 9998876641          5799999998762   223 99999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-+.  .+  ......+++. +++.|+|||.+++.
T Consensus       273 ~~~~lh~--~~--d~~~~~~l~~-~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          273 LKAVCHN--WS--DEKCIEFLSN-CHKALSPNGKVIIV  305 (372)
T ss_dssp             EESSGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             Eeccccc--CC--HHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            8654221  11  0112378898 79999999988865

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.73  E-value=3.1e-08  Score=90.64  Aligned_cols=111  Identities=12%  Similarity=-0.028  Sum_probs=77.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCC--------------------------------------cEEEEEECCHHHHHHH
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTV--------------------------------------EKVVMCDIDEEVVEFC  142 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~--------------------------------------~~v~~VEid~~vi~~a  142 (257)
                      .....+||.+||+|+++.+++.....                                      .+|+++|+|+.+++.|
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            34578999999999999888763211                                      3699999999999999


Q ss_pred             HhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCC--CcEEEEec
Q 025141          143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQA  219 (257)
Q Consensus       143 ~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p--gGil~~~~  219 (257)
                      +++....+   ...+++++.+|+.++..  .++||+|++|+|-....+.  .--..++|+. +.+.|++  ||.+.+-+
T Consensus       273 r~Na~~~g---l~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPYG~rl~~--~~~l~~ly~~-lg~~lk~~~g~~~~iit  343 (384)
T 3ldg_A          273 RKNAREVG---LEDVVKLKQMRLQDFKT--NKINGVLISNPPYGERLLD--DKAVDILYNE-MGETFAPLKTWSQFILT  343 (384)
T ss_dssp             HHHHHHTT---CTTTEEEEECCGGGCCC--CCCSCEEEECCCCTTTTSC--HHHHHHHHHH-HHHHHTTCTTSEEEEEE
T ss_pred             HHHHHHcC---CCCceEEEECChHHCCc--cCCcCEEEECCchhhccCC--HHHHHHHHHH-HHHHHhhCCCcEEEEEE
Confidence            99987553   24579999999988642  3589999999874332111  0112345555 4444444  88776654

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.73  E-value=3.2e-08  Score=85.67  Aligned_cols=75  Identities=20%  Similarity=0.388  Sum_probs=61.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhcC--CCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESR--KESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-l~~~--~~~fD  177 (257)
                      .+..+||+||||+|.++..+++..  .+|++||+|+++++.+++.+..      .++++++.+|+.++ +...  .++||
T Consensus        28 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~------~~~v~~i~~D~~~~~~~~~~~~~~~~   99 (255)
T 3tqs_A           28 QKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ------QKNITIYQNDALQFDFSSVKTDKPLR   99 (255)
T ss_dssp             CTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT------CTTEEEEESCTTTCCGGGSCCSSCEE
T ss_pred             CCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh------CCCcEEEEcchHhCCHHHhccCCCeE
Confidence            456789999999999999999863  6999999999999999998753      36899999999886 3322  35788


Q ss_pred             EEEEcCC
Q 025141          178 VIIGDLA  184 (257)
Q Consensus       178 vIi~D~~  184 (257)
                       |+.+++
T Consensus       100 -vv~NlP  105 (255)
T 3tqs_A          100 -VVGNLP  105 (255)
T ss_dssp             -EEEECC
T ss_pred             -EEecCC
Confidence             777754

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=98.72  E-value=4.9e-08  Score=86.46  Aligned_cols=124  Identities=20%  Similarity=0.316  Sum_probs=80.7

Q ss_pred             CCeEEEEeccchHHHHHHH----hcCCCcEE--EEEECCHH---------HHHHHHhhhhhccCCCCCCC--eEEEEcch
Q 025141          103 PKTIFIMGGGEGSTAREIL----RHKTVEKV--VMCDIDEE---------VVEFCKSYLVVNKEAFSDPR--LELVINDA  165 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~----~~~~~~~v--~~VEid~~---------vi~~a~~~~~~~~~~~~~~r--v~i~~~Da  165 (257)
                      .-+||++|.|+|.......    +..+..++  +.+|.+|.         ..++.+..+... ..+..++  ++++.+|+
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~-p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERV-PEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHC-SEEECSSEEEEEEESCH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhC-ccccCCcEEEEEEechH
Confidence            4579999999998653322    22333455  45554321         112222221110 0112344  46789999


Q ss_pred             HHHHhcCC-CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          166 RAELESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       166 ~~~l~~~~-~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      ++.+.... .++|+|+.|+|.|.. .|  .||+.++|+. ++++++|||++++.+.       ..   .+.+.|+++
T Consensus       176 ~~~l~~l~~~~~Da~flDgFsP~k-NP--eLWs~e~f~~-l~~~~~pgg~laTYta-------ag---~VRR~L~~a  238 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDAFSPYK-NP--ELWTLDFLSL-IKERIDEKGYWVSYSS-------SL---SVRKSLLTL  238 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECCSCTTT-SG--GGGSHHHHHH-HHTTEEEEEEEEESCC-------CH---HHHHHHHHT
T ss_pred             HHHHhhhcccceeEEEeCCCCccc-Cc--ccCCHHHHHH-HHHHhCCCcEEEEEeC-------cH---HHHHHHHHC
Confidence            99998754 489999999998763 44  7999999999 8999999999998642       22   445667766

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.72  E-value=1.6e-08  Score=91.73  Aligned_cols=97  Identities=16%  Similarity=0.124  Sum_probs=72.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ...+|||||||+|..+..+++..+..+++++|+ |.+++.+++          .++++++.+|+.+.+   ++. |+|++
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~~---p~~-D~v~~  267 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA----------FSGVEHLGGDMFDGV---PKG-DAIFI  267 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTTCC---CCC-SEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh----------cCCCEEEecCCCCCC---CCC-CEEEE
Confidence            458999999999999999998655679999999 988877653          268999999987522   233 99988


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ...-+.  .+  .-....+++. +++.|+|||.+++.
T Consensus       268 ~~vlh~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~  299 (368)
T 3reo_A          268 KWICHD--WS--DEHCLKLLKN-CYAALPDHGKVIVA  299 (368)
T ss_dssp             ESCGGG--BC--HHHHHHHHHH-HHHHSCTTCEEEEE
T ss_pred             echhhc--CC--HHHHHHHHHH-HHHHcCCCCEEEEE
Confidence            654221  01  0112467898 79999999988775

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.72  E-value=1.8e-08  Score=96.13  Aligned_cols=151  Identities=13%  Similarity=0.034  Sum_probs=96.3

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCC---------------CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKT---------------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND  164 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~---------------~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D  164 (257)
                      .+.+.+|||.+||+|+++..+.++-.               ..++.++|+|+.++++|+.++.+.+   .+.++.++.+|
T Consensus       242 ~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g---i~~~i~i~~gD  318 (544)
T 3khk_A          242 EPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG---IDFNFGKKNAD  318 (544)
T ss_dssp             CCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT---CCCBCCSSSCC
T ss_pred             hcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC---CCcccceeccc
Confidence            34556999999999999877654210               2589999999999999999887653   12345557888


Q ss_pred             hHHHHhcCCCceeEEEEcCCCC---CCC--------------------CcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          165 ARAELESRKESYDVIIGDLADP---IEG--------------------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       165 a~~~l~~~~~~fDvIi~D~~~~---~~~--------------------~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      ....-.....+||+|+.+||-.   +..                    .|...-....|++. +.+.|+|||.+++-...
T Consensus       319 tL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~-~l~~Lk~gGr~aiVlP~  397 (544)
T 3khk_A          319 SFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLH-MLYHLAPTGSMALLLAN  397 (544)
T ss_dssp             TTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHH-HHHTEEEEEEEEEEEET
T ss_pred             hhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHH-HHHHhccCceEEEEecc
Confidence            6543222347899999999732   110                    01011112368898 68999999987764311


Q ss_pred             CCCCCCh-HHHHHHHHHHhhhCCceEEEeecCccc
Q 025141          222 AGIFSHT-EVFSCIYNTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       222 ~~~~~~~-~~~~~~~~~l~~~F~~v~~~~~~~~~~  255 (257)
                       ++.... .....+.+.|-+.+.-..++..++-.|
T Consensus       398 -g~L~~~~~~~~~iRk~Lle~~~l~aII~LP~~lF  431 (544)
T 3khk_A          398 -GSMSSNTNNEGEIRKTLVEQDLVECMVALPGQLF  431 (544)
T ss_dssp             -HHHHCCGGGHHHHHHHHHHTTCEEEEEECCTTBC
T ss_pred             -hhhhcCcchHHHHHHHHHhCCcHhEEEECCCCCC
Confidence             111111 234566666766666556666655444

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.71  E-value=1.5e-08  Score=92.82  Aligned_cols=111  Identities=16%  Similarity=0.121  Sum_probs=76.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC--------------------------------------CcEEEEEECCHHHHHHH
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT--------------------------------------VEKVVMCDIDEEVVEFC  142 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~--------------------------------------~~~v~~VEid~~vi~~a  142 (257)
                      ....+|||++||+|+++.+++....                                      ..+|+++|+|+.+++.|
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            3457899999999999988876411                                      14799999999999999


Q ss_pred             HhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCC--CcEEEEec
Q 025141          143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQA  219 (257)
Q Consensus       143 ~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p--gGil~~~~  219 (257)
                      ++++..++   .+.++++..+|+.++..  +++||+|++|++-....+.  .-...++|+. +.+.|++  |+.+.+-+
T Consensus       274 r~Na~~~g---l~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPyg~rl~~--~~~l~~ly~~-lg~~lk~~~g~~~~iit  344 (385)
T 3ldu_A          274 RENAEIAG---VDEYIEFNVGDATQFKS--EDEFGFIITNPPYGERLED--KDSVKQLYKE-LGYAFRKLKNWSYYLIT  344 (385)
T ss_dssp             HHHHHHHT---CGGGEEEEECCGGGCCC--SCBSCEEEECCCCCCSHHH--HHHHHHHHHH-HHHHHHTSBSCEEEEEE
T ss_pred             HHHHHHcC---CCCceEEEECChhhcCc--CCCCcEEEECCCCcCccCC--HHHHHHHHHH-HHHHHhhCCCCEEEEEE
Confidence            99987653   23589999999988643  4689999999874321110  0011345555 4444544  66665544

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.70  E-value=2.9e-08  Score=86.84  Aligned_cols=113  Identities=16%  Similarity=0.159  Sum_probs=73.7

Q ss_pred             CCCeEEEEeccchH----HHHHHHhc-CC---CcEEEEEECCHHHHHHHHhhhh-hcc----------------CCCCC-
Q 025141          102 NPKTIFIMGGGEGS----TAREILRH-KT---VEKVVMCDIDEEVVEFCKSYLV-VNK----------------EAFSD-  155 (257)
Q Consensus       102 ~~~~VL~IG~G~G~----~~~~l~~~-~~---~~~v~~VEid~~vi~~a~~~~~-~~~----------------~~~~~-  155 (257)
                      ++.+||++|||+|.    ++..++.. +.   ..+|+++|||+.+++.|++..- ...                ....+ 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    55555543 21   2489999999999999998641 000                00001 


Q ss_pred             ---------CCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          156 ---------PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       156 ---------~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                               .++++...|..+.--...++||+|++-..-.. ..+   -.....++. +++.|+|||.+++..
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliy-f~~---~~~~~vl~~-~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIY-FDK---TTQEDILRR-FVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGG-SCH---HHHHHHHHH-HGGGEEEEEEEEECT
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHh-CCH---HHHHHHHHH-HHHHhCCCcEEEEEe
Confidence                     37899999976620011368999999432100 011   112577888 799999999999853

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.70  E-value=1.4e-08  Score=91.34  Aligned_cols=98  Identities=19%  Similarity=0.126  Sum_probs=73.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ++..+|||||||+|..+..+++..+..+++++|+ |.+++.|+++          ++++++.+|+.+.   . ..||+|+
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~---~-p~~D~v~  251 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----------NNLTYVGGDMFTS---I-PNADAVL  251 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----------TTEEEEECCTTTC---C-CCCSEEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----------CCcEEEeccccCC---C-CCccEEE
Confidence            3568999999999999999998654569999999 9998887652          4599999998652   2 2499999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCC---CcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNP---EGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p---gGil~~~  218 (257)
                      +...-+.  .+  ......+++. +++.|+|   ||.+++.
T Consensus       252 ~~~~lh~--~~--d~~~~~~l~~-~~~~L~p~~~gG~l~i~  287 (352)
T 1fp2_A          252 LKYILHN--WT--DKDCLRILKK-CKEAVTNDGKRGKVTII  287 (352)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHHSGGGCCCEEEEE
T ss_pred             eehhhcc--CC--HHHHHHHHHH-HHHhCCCCCCCcEEEEE
Confidence            8654221  11  0112378898 7999999   9988765

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.70  E-value=2.2e-08  Score=90.73  Aligned_cols=97  Identities=22%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ...+|||||||+|..+..+++..+..+++++|+ |.+++.+++          .++++++.+|+.+-  . ++. |+|++
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~--~-p~~-D~v~~  265 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----------FPGVTHVGGDMFKE--V-PSG-DTILM  265 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTTC--C-CCC-SEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----------cCCeEEEeCCcCCC--C-CCC-CEEEe
Confidence            468999999999999999998655579999999 888877653          26899999998762  2 233 99988


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ...-+.  .+.  -....+++. +++.|+|||.+++.
T Consensus       266 ~~vlh~--~~d--~~~~~~L~~-~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          266 KWILHD--WSD--QHCATLLKN-CYDALPAHGKVVLV  297 (364)
T ss_dssp             ESCGGG--SCH--HHHHHHHHH-HHHHSCTTCEEEEE
T ss_pred             hHHhcc--CCH--HHHHHHHHH-HHHHcCCCCEEEEE
Confidence            654221  010  112468898 79999999988875

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.69  E-value=9.8e-08  Score=81.76  Aligned_cols=75  Identities=21%  Similarity=0.358  Sum_probs=59.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|||||||+|.++..+++..  .+|++||+|+.+++.+++++..      .++++++.+|+.++--.....| .|+
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~------~~~v~~~~~D~~~~~~~~~~~~-~vv   99 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD------HDNFQVLNKDILQFKFPKNQSY-KIF   99 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT------CCSEEEECCCGGGCCCCSSCCC-EEE
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc------CCCeEEEEChHHhCCcccCCCe-EEE
Confidence            356799999999999999999864  6999999999999999998752      2689999999877532212345 566


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      .+++
T Consensus       100 ~nlP  103 (244)
T 1qam_A          100 GNIP  103 (244)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            6654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.68  E-value=5.4e-08  Score=85.11  Aligned_cols=122  Identities=12%  Similarity=0.128  Sum_probs=93.4

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fDv  178 (257)
                      ++..+|++-+|+|.++.++++ .. .+++.||+++...+..++++..      +++++++..|+...++.   ..++||+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS-~~-d~~vfvE~~~~a~~~L~~Nl~~------~~~~~V~~~D~~~~L~~l~~~~~~fdL  162 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLR-SQ-DRLYLCELHPTEYNFLLKLPHF------NKKVYVNHTDGVSKLNALLPPPEKRGL  162 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSC-TT-SEEEEECCSHHHHHHHTTSCCT------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred             cCCCceeEeCCcHHHHHHHcC-CC-CeEEEEeCCHHHHHHHHHHhCc------CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence            466899999999999999998 43 7999999999999999998863      46899999999999874   3457999


Q ss_pred             EEEcCCCCCCCCcccCCc--hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q 025141          179 IIGDLADPIEGGPCYKLY--TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~--t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F  242 (257)
                      |++||+-..   .  ..+  ..+.+.+  ...+.|+|+++++-  |  ....+....+.+.|++.-
T Consensus       163 VfiDPPYe~---k--~~~~~vl~~L~~--~~~r~~~Gi~v~WY--P--i~~~~~~~~~~~~l~~~~  217 (283)
T 2oo3_A          163 IFIDPSYER---K--EEYKEIPYAIKN--AYSKFSTGLYCVWY--P--VVNKAWTEQFLRKMREIS  217 (283)
T ss_dssp             EEECCCCCS---T--THHHHHHHHHHH--HHHHCTTSEEEEEE--E--ESSHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCC---C--cHHHHHHHHHHH--hCccCCCeEEEEEE--e--ccchHHHHHHHHHHHhcC
Confidence            999986321   1  122  1233333  34788999999985  3  345666778888887543

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.68  E-value=2.3e-08  Score=86.73  Aligned_cols=81  Identities=17%  Similarity=0.126  Sum_probs=64.9

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--CCCCC---CCeEEEEcchHHHHhcCCCceeE
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSD---PRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--~~~~~---~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+|||+|||.|..+..+++. + .+|++||+++.+.+++++.+....  ...+.   .|++++.+|+.++++...++||+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~-g-~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv  167 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV-G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH-T-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEEcCCcCCHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence            79999999999999999986 3 479999999999888887764211  01111   58999999999998765568999


Q ss_pred             EEEcCCCC
Q 025141          179 IIGDLADP  186 (257)
Q Consensus       179 Ii~D~~~~  186 (257)
                      |++|++-+
T Consensus       168 V~lDP~y~  175 (258)
T 2oyr_A          168 VYLDPMFP  175 (258)
T ss_dssp             EEECCCCC
T ss_pred             EEEcCCCC
Confidence            99998644

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.67  E-value=1.3e-07  Score=90.18  Aligned_cols=150  Identities=11%  Similarity=0.040  Sum_probs=98.4

Q ss_pred             CCCeEEEEeccchHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhcCCCce
Q 025141          102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESY  176 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~~~~~f  176 (257)
                      ...+|||.+||+|+++..+.++   .+..++.++|+|+.+.++|+.++.+.+  ...++.+++.+|.+..  -.....+|
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g--i~~~~~~I~~gDtL~~d~p~~~~~~f  298 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG--VPIENQFLHNADTLDEDWPTQEPTNF  298 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC--CCcCccceEecceecccccccccccc
Confidence            4569999999999998877765   234689999999999999999876653  1225789999997653  12234789


Q ss_pred             eEEEEcCCCC--CCCCc---------------ccCCchHHHHHHHHcCcCC-CCcEEEEecCCCCCCCChHHHHHHHHHH
Q 025141          177 DVIIGDLADP--IEGGP---------------CYKLYTKSFYEFVVKPRLN-PEGIFVTQAGPAGIFSHTEVFSCIYNTL  238 (257)
Q Consensus       177 DvIi~D~~~~--~~~~p---------------~~~L~t~ef~~~~~~~~L~-pgGil~~~~~~~~~~~~~~~~~~~~~~l  238 (257)
                      |+|+.+||-.  +....               +..-....|++. +.+.|+ |||++++-... ++.........+.+.|
T Consensus       299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~-~l~~Lk~~gGr~a~VlP~-g~Lf~~~~~~~iRk~L  376 (542)
T 3lkd_A          299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLH-GYYHLKQDNGVMAIVLPH-GVLFRGNAEGTIRKAL  376 (542)
T ss_dssp             SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHH-HHHTBCTTTCEEEEEEET-HHHHCCTHHHHHHHHH
T ss_pred             cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHH-HHHHhCCCceeEEEEecc-hHhhCCchhHHHHHHH
Confidence            9999999731  11000               000012358898 689999 99988764311 1111122345566667


Q ss_pred             hhhCCceEEEeecCccc
Q 025141          239 RQVFKCGCCALFSSYSF  255 (257)
Q Consensus       239 ~~~F~~v~~~~~~~~~~  255 (257)
                      -+.+.-..++..++-.|
T Consensus       377 le~~~l~~II~LP~~lF  393 (542)
T 3lkd_A          377 LEEGAIDTVIGLPANIF  393 (542)
T ss_dssp             HHTTCEEEEEECCSSCS
T ss_pred             HhCCceeEEEEcccccc
Confidence            66666555666655444

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.67  E-value=2.2e-08  Score=83.16  Aligned_cols=109  Identities=19%  Similarity=0.219  Sum_probs=73.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+||+||||+|..+..+.     .+++++|+++.                   +++++.+|+.+ +....++||+|+
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~v~  120 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL-------------------DPRVTVCDMAQ-VPLEDESVDVAV  120 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-------------------STTEEESCTTS-CSCCTTCEEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-------------------CceEEEecccc-CCCCCCCEeEEE
Confidence            456899999999999988762     48999999987                   34567777665 223356899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGC  246 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~  246 (257)
                      +...-+.       --...+++. +++.|+|||.+++...... +..   ...+.+.+++. |..+.
T Consensus       121 ~~~~l~~-------~~~~~~l~~-~~~~L~~gG~l~i~~~~~~-~~~---~~~~~~~l~~~Gf~~~~  175 (215)
T 2zfu_A          121 FCLSLMG-------TNIRDFLEE-ANRVLKPGGLLKVAEVSSR-FED---VRTFLRAVTKLGFKIVS  175 (215)
T ss_dssp             EESCCCS-------SCHHHHHHH-HHHHEEEEEEEEEEECGGG-CSC---HHHHHHHHHHTTEEEEE
T ss_pred             Eehhccc-------cCHHHHHHH-HHHhCCCCeEEEEEEcCCC-CCC---HHHHHHHHHHCCCEEEE
Confidence            8754321       113578888 7999999999887532111 122   23455556554 54444

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.65  E-value=4.1e-08  Score=85.76  Aligned_cols=73  Identities=19%  Similarity=0.241  Sum_probs=60.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +. +||+||||+|.++..+++..  .+|++||+|+++++.+++.+.       +.+++++++|+.++--.....+|.|+.
T Consensus        47 ~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~-------~~~v~vi~~D~l~~~~~~~~~~~~iv~  116 (271)
T 3fut_A           47 TG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLS-------GLPVRLVFQDALLYPWEEVPQGSLLVA  116 (271)
T ss_dssp             CS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTT-------TSSEEEEESCGGGSCGGGSCTTEEEEE
T ss_pred             CC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC-------CCCEEEEECChhhCChhhccCccEEEe
Confidence            34 99999999999999999963  689999999999999998764       258999999998763222236899999


Q ss_pred             cCC
Q 025141          182 DLA  184 (257)
Q Consensus       182 D~~  184 (257)
                      +++
T Consensus       117 NlP  119 (271)
T 3fut_A          117 NLP  119 (271)
T ss_dssp             EEC
T ss_pred             cCc
Confidence            975

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.64  E-value=3.7e-08  Score=93.91  Aligned_cols=153  Identities=8%  Similarity=-0.019  Sum_probs=94.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcC---C---------------CcEEEEEECCHHHHHHHHhhhhhccCCC-CCCCeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHK---T---------------VEKVVMCDIDEEVVEFCKSYLVVNKEAF-SDPRLELVI  162 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~---~---------------~~~v~~VEid~~vi~~a~~~~~~~~~~~-~~~rv~i~~  162 (257)
                      ...+|||.+||+|+++..+.++-   .               ..+++++|+|+.++++|+.++.+.+... .+.+.++++
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~  248 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  248 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence            35699999999999987776531   0               1379999999999999999876543100 001378999


Q ss_pred             cchHHHHhcCCCceeEEEEcCCCCCCCCc--------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHH
Q 025141          163 NDARAELESRKESYDVIIGDLADPIEGGP--------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI  234 (257)
Q Consensus       163 ~Da~~~l~~~~~~fDvIi~D~~~~~~~~p--------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~  234 (257)
                      +|+........++||+|+.+||-......        +..-....|++. +.+.|+|||.+++-... ++.........+
T Consensus       249 gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~-~l~~Lk~gGr~a~V~p~-~~L~~~~~~~~i  326 (541)
T 2ar0_A          249 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH-IIETLHPGGRAAVVVPD-NVLFEGGKGTDI  326 (541)
T ss_dssp             SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH-HHHHEEEEEEEEEEEEH-HHHHCCTHHHHH
T ss_pred             CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHH-HHHHhCCCCEEEEEecC-cceecCcHHHHH
Confidence            99876543334689999999873211000        000112368888 68899999988765311 101111123445


Q ss_pred             HHHHhhhCCceEEEeecCcccc
Q 025141          235 YNTLRQVFKCGCCALFSSYSFF  256 (257)
Q Consensus       235 ~~~l~~~F~~v~~~~~~~~~~~  256 (257)
                      .+.|.+.+.-..++..++-.|+
T Consensus       327 R~~L~~~~~l~~ii~Lp~~~F~  348 (541)
T 2ar0_A          327 RRDLMDKCHLHTILRLPTGIFY  348 (541)
T ss_dssp             HHHHHHHEEEEEEEECCSSCSS
T ss_pred             HHHHhhcCCEEEEEEcCcCccc
Confidence            5556555544445555554443

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.63  E-value=2.5e-08  Score=88.09  Aligned_cols=75  Identities=21%  Similarity=0.329  Sum_probs=58.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||+|.++..+++.  ..+|++||+|+.+++.+++++...+    .++++++.+|+.++-   .++||+|+
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~----~~~v~~~~~D~~~~~---~~~~D~Vv  111 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEG----YNNLEVYEGDAIKTV---FPKFDVCT  111 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTT----CCCEEC----CCSSC---CCCCSEEE
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEECchhhCC---cccCCEEE
Confidence            45679999999999999999986  3699999999999999999876432    268999999987642   35899999


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      +|++
T Consensus       112 ~n~p  115 (299)
T 2h1r_A          112 ANIP  115 (299)
T ss_dssp             EECC
T ss_pred             EcCC
Confidence            9976

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.61  E-value=5.2e-07  Score=81.75  Aligned_cols=135  Identities=12%  Similarity=0.073  Sum_probs=93.1

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--CCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      +..+|||+++|.|+=+.+++.......|+++|+++.-++..++++...+  ......++.+...|++.+-....+.||.|
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~V  227 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRV  227 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEE
Confidence            4579999999999988888876555689999999999999888875321  11123588999999999876667899999


Q ss_pred             EEcCCCCC----C--CCccc-CC-----------chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHH
Q 025141          180 IGDLADPI----E--GGPCY-KL-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT  237 (257)
Q Consensus       180 i~D~~~~~----~--~~p~~-~L-----------~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~  237 (257)
                      ++|++-..    .  ..|.. ..           ...+.+.. +.+.|||||+++--+.+....-+......+++.
T Consensus       228 LlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~-a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~  302 (359)
T 4fzv_A          228 LVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAA-GLLATKPGGHVVYSTCSLSHLQNEYVVQGAIEL  302 (359)
T ss_dssp             EEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHH-HHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHH
T ss_pred             EECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHh
Confidence            99998321    0  11110 00           12466777 678999999998765544322333444444443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.59  E-value=1.1e-07  Score=93.63  Aligned_cols=148  Identities=11%  Similarity=0.052  Sum_probs=92.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCC---CcEEEEEECCHHHHHHH--HhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKT---VEKVVMCDIDEEVVEFC--KSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~---~~~v~~VEid~~vi~~a--~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f  176 (257)
                      .+.+|||.|||+|+++..+++..+   ..+++++|+|+.++++|  +.++..+.-....+...+...|....-.....+|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            467999999999999999887532   35799999999999999  5544332110112234666777655211234689


Q ss_pred             eEEEEcCCCCC-CCCccc-----------------C-----CchHHHHHHHHcCcCCCCcEEEEecCCCCCCC--ChHHH
Q 025141          177 DVIIGDLADPI-EGGPCY-----------------K-----LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVF  231 (257)
Q Consensus       177 DvIi~D~~~~~-~~~p~~-----------------~-----L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~--~~~~~  231 (257)
                      |+|+.+||-.. ...+..                 .     -....|++. +.+.|+|||.+++-....  +.  .....
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~-Al~lLKpGGrLAfIlP~s--~Lf~sg~~~  477 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLEL-VTELVQDGTVISAIMPKQ--YLTAQGNES  477 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHH-HHHHSCTTCEEEEEEETH--HHHCCSHHH
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHH-HHHhcCCCcEEEEEEChH--HhccCChHH
Confidence            99999997311 000000                 0     012357888 688999999888754211  22  22334


Q ss_pred             HHHHHHHhhhCCceEEEeecC
Q 025141          232 SCIYNTLRQVFKCGCCALFSS  252 (257)
Q Consensus       232 ~~~~~~l~~~F~~v~~~~~~~  252 (257)
                      ..+.+.|.+.+.-...+.++.
T Consensus       478 kkLRk~LLe~~~I~aIIdLP~  498 (878)
T 3s1s_A          478 KAFREFLVGNFGLEHIFLYPR  498 (878)
T ss_dssp             HHHHHHHTTTTCEEEEEECCB
T ss_pred             HHHHHHHHhCCCeEEEEECCC
Confidence            566666766666666666654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.56  E-value=4.6e-07  Score=78.02  Aligned_cols=74  Identities=31%  Similarity=0.486  Sum_probs=58.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-~~~~~~fDvI  179 (257)
                      .+..+|||||||+|.++..+++. +..+|++||+|+.+++.+++. .       .++++++.+|+.++- ....+.| .|
T Consensus        30 ~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~-------~~~v~~i~~D~~~~~~~~~~~~~-~v   99 (249)
T 3ftd_A           30 EEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-G-------DERLEVINEDASKFPFCSLGKEL-KV   99 (249)
T ss_dssp             CTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-C-------CTTEEEECSCTTTCCGGGSCSSE-EE
T ss_pred             CCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-c-------CCCeEEEEcchhhCChhHccCCc-EE
Confidence            35679999999999999999987 347999999999999999986 2       258999999997752 2222234 77


Q ss_pred             EEcCC
Q 025141          180 IGDLA  184 (257)
Q Consensus       180 i~D~~  184 (257)
                      +.+++
T Consensus       100 v~NlP  104 (249)
T 3ftd_A          100 VGNLP  104 (249)
T ss_dssp             EEECC
T ss_pred             EEECc
Confidence            87765

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.54  E-value=2.1e-07  Score=81.60  Aligned_cols=109  Identities=12%  Similarity=0.033  Sum_probs=82.2

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcC-----CCcEEEEEECCHH--------------------------HHHHHHhhhhh
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHK-----TVEKVVMCDIDEE--------------------------VVEFCKSYLVV  148 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~-----~~~~v~~VEid~~--------------------------vi~~a~~~~~~  148 (257)
                      ...|++||++|+..|..+..++...     +..+|+++|..+.                          .++.++++|..
T Consensus       104 ~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~  183 (282)
T 2wk1_A          104 NNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN  183 (282)
T ss_dssp             TTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred             cCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence            3568899999999999887765421     2468999997521                          36678888864


Q ss_pred             ccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          149 NKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       149 ~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .+  +..++++++.+|+.+.+... .++||+|++|.-.        .-.+.++++. +..+|+|||++++.-
T Consensus       184 ~g--l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--------y~~~~~~Le~-~~p~L~pGGiIv~DD  244 (282)
T 2wk1_A          184 YD--LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--------YESTWDTLTN-LYPKVSVGGYVIVDD  244 (282)
T ss_dssp             TT--CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--------HHHHHHHHHH-HGGGEEEEEEEEESS
T ss_pred             cC--CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--------cccHHHHHHH-HHhhcCCCEEEEEcC
Confidence            42  23479999999999998765 4789999999631        1125688998 799999999999853

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.54  E-value=6e-08  Score=87.34  Aligned_cols=97  Identities=18%  Similarity=0.131  Sum_probs=72.3

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ...+|||||||+|..+..+++..+..+++++|+ +.+++.+++          .++++++.+|+.+   .. ..||+|++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~-~~~D~v~~  257 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----------NENLNFVGGDMFK---SI-PSADAVLL  257 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----------CSSEEEEECCTTT---CC-CCCSEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----------CCCcEEEeCccCC---CC-CCceEEEE
Confidence            457999999999999999998755568999999 888876654          1469999999865   22 25999998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCC---CcEEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNP---EGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p---gGil~~~  218 (257)
                      ...-+.  .+  ......+++. +++.|+|   ||.+++.
T Consensus       258 ~~vlh~--~~--d~~~~~~l~~-~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          258 KWVLHD--WN--DEQSLKILKN-SKEAISHKGKDGKVIII  292 (358)
T ss_dssp             ESCGGG--SC--HHHHHHHHHH-HHHHTGGGGGGCEEEEE
T ss_pred             cccccC--CC--HHHHHHHHHH-HHHhCCCCCCCcEEEEE
Confidence            754221  11  0112478898 7999999   9987764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.47  E-value=9.1e-07  Score=86.83  Aligned_cols=113  Identities=7%  Similarity=-0.026  Sum_probs=76.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC------------------------------------------CCcEEEEEECCHHH
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK------------------------------------------TVEKVVMCDIDEEV  138 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~------------------------------------------~~~~v~~VEid~~v  138 (257)
                      .....+||.+||+|+++.+++...                                          ...+|+++|+|+.+
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            345789999999999998877531                                          11479999999999


Q ss_pred             HHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-CceeEEEEcCCCCCCCCcccCCchHHHHHHHHc---CcCCCCcE
Q 025141          139 VEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK---PRLNPEGI  214 (257)
Q Consensus       139 i~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~---~~L~pgGi  214 (257)
                      ++.|+++....+   .+.++++..+|+.+...... ++||+|++|||-....+.  .--..++|+. +.   +.+.|||.
T Consensus       269 v~~A~~N~~~ag---v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~--~~~l~~ly~~-l~~~lk~~~~g~~  342 (703)
T 3v97_A          269 IQRARTNARLAG---IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDS--EPALIALHSL-LGRIMKNQFGGWN  342 (703)
T ss_dssp             HHHHHHHHHHTT---CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---C--CHHHHHHHHH-HHHHHHHHCTTCE
T ss_pred             HHHHHHHHHHcC---CCCceEEEECChhhCccccccCCCCEEEeCCCccccccc--hhHHHHHHHH-HHHHHHhhCCCCe
Confidence            999999987653   24579999999988532222 389999999874332111  0111344444 33   34557887


Q ss_pred             EEEec
Q 025141          215 FVTQA  219 (257)
Q Consensus       215 l~~~~  219 (257)
                      +++-+
T Consensus       343 ~~ilt  347 (703)
T 3v97_A          343 LSLFS  347 (703)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77643

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.46  E-value=2.5e-07  Score=80.39  Aligned_cols=136  Identities=11%  Similarity=0.037  Sum_probs=85.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ....+|||||||.|+.+..++...+..+++++++.-+..     ..+.....+ ..++....+|+ +...-.+++||+|+
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~-----~~pi~~~~~-g~~ii~~~~~~-dv~~l~~~~~DlVl  145 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH-----EKPMNVQSL-GWNIITFKDKT-DIHRLEPVKCDTLL  145 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC-----CCCCCCCBT-TGGGEEEECSC-CTTTSCCCCCSEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc-----ccccccCcC-CCCeEEEeccc-eehhcCCCCccEEE
Confidence            345689999999999999988766677888888864320     001111001 11333344443 11222357899999


Q ss_pred             EcCCCCCCCCcc-cCCchHHHHHHHHcCcCCCC-cEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEe
Q 025141          181 GDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPE-GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCAL  249 (257)
Q Consensus       181 ~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pg-Gil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~  249 (257)
                      +|.... ...+. .+..+.+.++. +.+.|+|| |.+++..-.|  +  .+.+..+++.|++.|..|..+.
T Consensus       146 sD~apn-sG~~~~D~~rs~~LL~~-a~~~LkpG~G~FV~KVf~p--y--g~~~~~l~~~lk~~F~~V~~~K  210 (277)
T 3evf_A          146 CDIGES-SSSSVTEGERTVRVLDT-VEKWLACGVDNFCVKVLAP--Y--MPDVLEKLELLQRRFGGTVIRN  210 (277)
T ss_dssp             ECCCCC-CSCHHHHHHHHHHHHHH-HHHHHTTCCSEEEEEESCT--T--SHHHHHHHHHHHHHHCCEEECC
T ss_pred             ecCccC-cCchHHHHHHHHHHHHH-HHHHhCCCCCeEEEEecCC--C--CccHHHHHHHHHHhcCCEEEEe
Confidence            998643 21110 11112233565 68899999 9999975332  1  4567789999999999998765

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.44  E-value=5.8e-07  Score=87.32  Aligned_cols=106  Identities=22%  Similarity=0.362  Sum_probs=74.5

Q ss_pred             CCeEEEEeccchHHHHHHHhc----C---------CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 025141          103 PKTIFIMGGGEGSTAREILRH----K---------TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL  169 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~----~---------~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l  169 (257)
                      .+-||++|||+|-+...+++.    .         ...+|.+||.++..+...++... ++  + ..+++++.+|.+++-
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng--~-~d~VtVI~gd~eev~  485 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT--W-KRRVTIIESDMRSLP  485 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT--T-TTCSEEEESCGGGHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC--C-CCeEEEEeCchhhcc
Confidence            457999999999996432221    1         12499999999987766555433 21  2 468999999999984


Q ss_pred             h----cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          170 E----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       170 ~----~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      -    ...++.|+||+......  .. .+| ..|.+.. +.+.|||||+++-
T Consensus       486 lp~~~~~~ekVDIIVSElmGsf--l~-nEL-~pe~Ld~-v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          486 GIAKDRGFEQPDIIVSELLGSF--GD-NEL-SPECLDG-VTGFLKPTTISIP  532 (745)
T ss_dssp             HHHHHTTCCCCSEEEECCCBTT--BG-GGS-HHHHHHT-TGGGSCTTCEEES
T ss_pred             cccccCCCCcccEEEEeccccc--cc-hhc-cHHHHHH-HHHhCCCCcEEEC
Confidence            3    12589999999986422  11 223 4678887 6899999999874

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.42  E-value=1.8e-07  Score=75.29  Aligned_cols=88  Identities=11%  Similarity=0.169  Sum_probs=66.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDv  178 (257)
                      .+..+||+||||.               | .+|+++.+++.|++.+.        .+++++.+|+.+.-..  .+++||+
T Consensus        11 ~~g~~vL~~~~g~---------------v-~vD~s~~ml~~a~~~~~--------~~~~~~~~d~~~~~~~~~~~~~fD~   66 (176)
T 2ld4_A           11 SAGQFVAVVWDKS---------------S-PVEALKGLVDKLQALTG--------NEGRVSVENIKQLLQSAHKESSFDI   66 (176)
T ss_dssp             CTTSEEEEEECTT---------------S-CHHHHHHHHHHHHHHTT--------TTSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred             CCCCEEEEecCCc---------------e-eeeCCHHHHHHHHHhcc--------cCcEEEEechhcCccccCCCCCEeE
Confidence            4678999999985               1 28999999999998753        2489999999875431  4578999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |++...-++. .+  .  ...++++ ++++|||||.+++.
T Consensus        67 V~~~~~l~~~-~~--~--~~~~l~~-~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           67 ILSGLVPGST-TL--H--SAEILAE-IARILRPGGCLFLK  100 (176)
T ss_dssp             EEECCSTTCC-CC--C--CHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EEECChhhhc-cc--C--HHHHHHH-HHHHCCCCEEEEEE
Confidence            9986543221 01  1  2678999 79999999999985

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.39  E-value=5e-07  Score=79.15  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=57.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hcCCC---
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKE---  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-~~~~~---  174 (257)
                      .+..+||+||||+|.++..+++....  .+|++||+|+.+++.+++.+  .      ++++++++|+.++- .....   
T Consensus        41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~------~~v~~i~~D~~~~~~~~~~~~~~  112 (279)
T 3uzu_A           41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G------ELLELHAGDALTFDFGSIARPGD  112 (279)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G------GGEEEEESCGGGCCGGGGSCSSS
T ss_pred             CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C------CCcEEEECChhcCChhHhccccc
Confidence            45679999999999999999986321  23999999999999999873  2      48999999998752 21111   


Q ss_pred             -ceeEEEEcCC
Q 025141          175 -SYDVIIGDLA  184 (257)
Q Consensus       175 -~fDvIi~D~~  184 (257)
                       ..+.|+.+++
T Consensus       113 ~~~~~vv~NlP  123 (279)
T 3uzu_A          113 EPSLRIIGNLP  123 (279)
T ss_dssp             SCCEEEEEECC
T ss_pred             CCceEEEEccC
Confidence             2356777764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.38  E-value=4.8e-07  Score=87.49  Aligned_cols=104  Identities=14%  Similarity=0.253  Sum_probs=73.1

Q ss_pred             CCeEEEEeccchHHHHHHH---hcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          103 PKTIFIMGGGEGSTAREIL---RHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~---~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+.||++|+|+|-+...++   +... ..+|.+||-+|. ...+++....++   -+.+|+++.+|.+++  ..+++.|+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~---~~dkVtVI~gd~eev--~LPEKVDI  431 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEE---WGSQVTVVSSDMREW--VAPEKADI  431 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHT---TGGGEEEEESCTTTC--CCSSCEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhcc---CCCeEEEEeCcceec--cCCcccCE
Confidence            3569999999999844333   3221 127899999985 556777665443   356999999999886  45689999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ||+...+..  .. .++ ..+.+.. ..+.|||||+++-
T Consensus       432 IVSEwMG~f--Ll-~E~-mlevL~A-rdr~LKPgGimiP  465 (637)
T 4gqb_A          432 IVSELLGSF--AD-NEL-SPECLDG-AQHFLKDDGVSIP  465 (637)
T ss_dssp             EECCCCBTT--BG-GGC-HHHHHHH-HGGGEEEEEEEES
T ss_pred             EEEEcCccc--cc-ccC-CHHHHHH-HHHhcCCCcEEcc
Confidence            999987432  11 222 2366666 6889999999873

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.37  E-value=3.3e-07  Score=79.07  Aligned_cols=74  Identities=12%  Similarity=0.212  Sum_probs=56.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcE--EEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhcC---CC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEK--VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESR---KE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~--v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-l~~~---~~  174 (257)
                      .+..+||+||||+|.++. +.+ .  .+  |++||+|+.+++.+++.+..      .++++++.+|+.++ +...   .+
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~~-~--~~~~v~avEid~~~~~~a~~~~~~------~~~v~~i~~D~~~~~~~~~~~~~~   89 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PVG-E--RLDQLTVIELDRDLAARLQTHPFL------GPKLTIYQQDAMTFNFGELAEKMG   89 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HHH-T--TCSCEEEECCCHHHHHHHHTCTTT------GGGEEEECSCGGGCCHHHHHHHHT
T ss_pred             CCcCEEEEECCCCcHHHH-hhh-C--CCCeEEEEECCHHHHHHHHHHhcc------CCceEEEECchhhCCHHHhhcccC
Confidence            345789999999999999 654 3  35  99999999999999987642      25899999999774 2111   12


Q ss_pred             ceeEEEEcCC
Q 025141          175 SYDVIIGDLA  184 (257)
Q Consensus       175 ~fDvIi~D~~  184 (257)
                      ..|.|+.+++
T Consensus        90 ~~~~vvsNlP   99 (252)
T 1qyr_A           90 QPLRVFGNLP   99 (252)
T ss_dssp             SCEEEEEECC
T ss_pred             CceEEEECCC
Confidence            3578888875

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=98.30  E-value=2.8e-06  Score=74.30  Aligned_cols=137  Identities=19%  Similarity=0.200  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHh--hcCCCCCeEEEEec------cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCe
Q 025141           87 IYHESLVHPAL--LHHPNPKTIFIMGG------GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL  158 (257)
Q Consensus        87 ~y~e~l~~~~l--~~~~~~~~VL~IG~------G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv  158 (257)
                      -|++....+--  +..|...+||++|+      ..|+....-. .+....|+++||.|-+               .++. 
T Consensus        92 kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~-~p~g~~VVavDL~~~~---------------sda~-  154 (344)
T 3r24_A           92 KYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQW-LPTGTLLVDSDLNDFV---------------SDAD-  154 (344)
T ss_dssp             HHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHH-SCTTCEEEEEESSCCB---------------CSSS-
T ss_pred             HHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHh-CCCCcEEEEeeCcccc---------------cCCC-
Confidence            36655443311  23577899999996      5666322211 2332589999998654               1233 


Q ss_pred             EEEEcchHHHHhcCCCceeEEEEcCCCCCC---CCcc--cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHH
Q 025141          159 ELVINDARAELESRKESYDVIIGDLADPIE---GGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC  233 (257)
Q Consensus       159 ~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~---~~p~--~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~  233 (257)
                      .++.+|....  ....+||+|++|.+....   ..+.  ..-+.+..+.- +++.|+|||.+++..     +.... . +
T Consensus       155 ~~IqGD~~~~--~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdf-A~~~LkpGGsFvVKV-----FQGsg-~-~  224 (344)
T 3r24_A          155 STLIGDCATV--HTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGF-IKQKLALGGSIAVKI-----TEHSW-N-A  224 (344)
T ss_dssp             EEEESCGGGE--EESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHH-HHHHEEEEEEEEEEE-----CSSSC-C-H
T ss_pred             eEEEcccccc--ccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHH-HHHhCcCCCEEEEEE-----ecCCC-H-H
Confidence            4489997653  234789999999874322   1111  11123444554 688999999999875     11111 1 3


Q ss_pred             HHHHHhhhCCceEEEee
Q 025141          234 IYNTLRQVFKCGCCALF  250 (257)
Q Consensus       234 ~~~~l~~~F~~v~~~~~  250 (257)
                      .+..+++.|..|+.+..
T Consensus       225 ~L~~lrk~F~~VK~fK~  241 (344)
T 3r24_A          225 DLYKLMGHFSWWTAFVT  241 (344)
T ss_dssp             HHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHhhCCeEEEECC
Confidence            45557779999988854

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.29  E-value=2e-07  Score=81.19  Aligned_cols=136  Identities=13%  Similarity=0.064  Sum_probs=84.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ...+|||||||.|+.+..+++..++.+|+++|+.......+     ..... ...++.....+. +...-...++|+|++
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~p-----i~~~~-~g~~ii~~~~~~-dv~~l~~~~~DvVLS  162 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKP-----IMRTT-LGWNLIRFKDKT-DVFNMEVIPGDTLLC  162 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCC-----CCCCB-TTGGGEEEECSC-CGGGSCCCCCSEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccc-----ccccc-CCCceEEeeCCc-chhhcCCCCcCEEEe
Confidence            45689999999999999988766677899999975421111     11000 112222222221 112224578999999


Q ss_pred             cCCCCCCCCcc-cCCchHHHHHHHHcCcCCCC--cEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEee
Q 025141          182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPE--GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       182 D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pg--Gil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~  250 (257)
                      |.... ...+. .+..+.+.++. +.+.|+||  |.+++..-.|  +  .+.+..+++.|++.|..|..+.-
T Consensus       163 DmApn-sG~~~~D~~rs~~LL~~-A~~~Lk~g~~G~Fv~KvF~p--y--g~~~~~l~~~lk~~F~~V~~~KP  228 (282)
T 3gcz_A          163 DIGES-SPSIAVEEQRTLRVLNC-AKQWLQEGNYTEFCIKVLCP--Y--TPLIMEELSRLQLKHGGGLVRVP  228 (282)
T ss_dssp             CCCCC-CSCHHHHHHHHHHHHHH-HHHHHHHHCCCEEEEEESCC--C--SHHHHHHHHHHHHHHCCEEECCT
T ss_pred             cCccC-CCChHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEecC--C--CccHHHHHHHHHHhcCCEEEEcC
Confidence            98643 21110 12222234555 57899999  9999975222  1  45677899999999999987653

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.25  E-value=5.1e-08  Score=83.32  Aligned_cols=75  Identities=19%  Similarity=0.393  Sum_probs=60.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|||||||+|.++..+++..  .+|+++|+|+.+++.+++++.      ..++++++.+|+.++--...++| .|+
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~------~~~~v~~~~~D~~~~~~~~~~~f-~vv   98 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK------LNTRVTLIHQDILQFQFPNKQRY-KIV   98 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT------TCSEEEECCSCCTTTTCCCSSEE-EEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhc------cCCceEEEECChhhcCcccCCCc-EEE
Confidence            356789999999999999999863  699999999999999988765      13689999999887532213579 777


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      ++++
T Consensus        99 ~n~P  102 (245)
T 1yub_A           99 GNIP  102 (245)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            7765

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.21  E-value=2.3e-06  Score=74.96  Aligned_cols=136  Identities=13%  Similarity=0.094  Sum_probs=84.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.++||||||+.|+++..+++..++..|+++|+......     .+.....+..+-+.+..+  .+...-.+.++|+|+
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~-----~P~~~~~~~~~iv~~~~~--~di~~l~~~~~DlVl  152 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHE-----KPIHMQTLGWNIVKFKDK--SNVFTMPTEPSDTLL  152 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSC-----CCCCCCBTTGGGEEEECS--CCTTTSCCCCCSEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccc-----ccccccccCCceEEeecC--ceeeecCCCCcCEEe
Confidence            5678999999999999999998656778999999643210     010000001111222211  112222357899999


Q ss_pred             EcCCCCCCCCcc-cCCchHHHHHHHHcCcCCCC-cEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEe
Q 025141          181 GDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPE-GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCAL  249 (257)
Q Consensus       181 ~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pg-Gil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~  249 (257)
                      +|.... ...+. .+.-+...+.. +.+.|+|| |.|++..=.|  +  .+....++..|++.|..|..+.
T Consensus       153 sD~APn-sG~~~~D~~rs~~LL~~-A~~~LkpG~G~FV~KvF~~--y--G~~~~~ll~~lk~~F~~V~~~K  217 (300)
T 3eld_A          153 CDIGES-SSNPLVERDRTMKVLEN-FERWKHVNTENFCVKVLAP--Y--HPDVIEKLERLQLRFGGGIVRV  217 (300)
T ss_dssp             ECCCCC-CSSHHHHHHHHHHHHHH-HHHHCCTTCCEEEEEESST--T--SHHHHHHHHHHHHHHCCEEECC
T ss_pred             ecCcCC-CCCHHHHHHHHHHHHHH-HHHHhcCCCCcEEEEeccc--c--CccHHHHHHHHHHhCCcEEEEe
Confidence            998643 21110 11222334555 57899999 9999975222  1  4567789999999999998764

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.16  E-value=4.4e-06  Score=81.32  Aligned_cols=113  Identities=12%  Similarity=0.124  Sum_probs=81.3

Q ss_pred             CCeEEEEeccchHHHHHHHhc--------C----CCcEEEEEEC---CHHHHHHHHhhhh------------hcc-----
Q 025141          103 PKTIFIMGGGEGSTAREILRH--------K----TVEKVVMCDI---DEEVVEFCKSYLV------------VNK-----  150 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~--------~----~~~~v~~VEi---d~~vi~~a~~~~~------------~~~-----  150 (257)
                      .-+||++|.|+|.......+.        |    ..-+++.+|.   +++.++.+-..++            .+.     
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            358999999999976555442        1    1136889999   8877774444321            000     


Q ss_pred             --CCCCC--CCeEEEEcchHHHHhcC----CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          151 --EAFSD--PRLELVINDARAELESR----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       151 --~~~~~--~rv~i~~~Da~~~l~~~----~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                        -.+.+  -+++++.+|+++.+.+.    ..+||+|++|.|.|.. .|  .+++.++|+. +.+.++|||.++..+
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~-np--~~w~~~~~~~-l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK-NP--DMWTQNLFNA-MARLARPGGTLATFT  219 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG-CG--GGSCHHHHHH-HHHHEEEEEEEEESC
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcC-Ch--hhhhHHHHHH-HHHHhCCCCEEEecc
Confidence              00122  45678999999999875    4679999999997752 33  7999999999 899999999998754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.11  E-value=5.7e-06  Score=80.76  Aligned_cols=114  Identities=15%  Similarity=0.171  Sum_probs=79.4

Q ss_pred             CCCeEEEEeccchHHHHHHHhc--------CC----CcEEEEEECCH---HHHHHHHhhhh------------hc-----
Q 025141          102 NPKTIFIMGGGEGSTAREILRH--------KT----VEKVVMCDIDE---EVVEFCKSYLV------------VN-----  149 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~--------~~----~~~v~~VEid~---~vi~~a~~~~~------------~~-----  149 (257)
                      ++-+||++|.|+|.....+.+.        |.    ..+++.+|..|   +.+..+-+.++            .+     
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            3468999999999976655442        11    14789999944   44443322221            00     


Q ss_pred             --cCCCCCC--CeEEEEcchHHHHhcC----CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          150 --KEAFSDP--RLELVINDARAELESR----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       150 --~~~~~~~--rv~i~~~Da~~~l~~~----~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                        .-.+.++  +++++.+|+++.+...    ..++|.+++|.|.|.. .|  .+++.++|.. +.+.++|||.++...
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~-np--~~w~~~~~~~-l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAK-NP--DMWNEQLFNA-MARMTRPGGTFSTFT  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CC--TTCSHHHHHH-HHHHEEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCC-Ch--hhhhHHHHHH-HHHHhCCCCEEEecc
Confidence              0012233  5678999999999875    4789999999998753 34  7999999999 799999999998753

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.09  E-value=1.5e-05  Score=69.70  Aligned_cols=73  Identities=30%  Similarity=0.274  Sum_probs=61.9

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---HhcCC-Ccee
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESRK-ESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---l~~~~-~~fD  177 (257)
                      +...+||++||.|+-++.+++.  ..+|+++|.||.+++.|++ +.      . +|++++++|..++   ++..+ +++|
T Consensus        22 ~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~------~-~rv~lv~~~f~~l~~~L~~~g~~~vD   91 (285)
T 1wg8_A           22 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LH------L-PGLTVVQGNFRHLKRHLAALGVERVD   91 (285)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TC------C-TTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hc------c-CCEEEEECCcchHHHHHHHcCCCCcC
Confidence            4578999999999999999997  3699999999999999998 53      1 5999999999876   44433 6799


Q ss_pred             EEEEcCC
Q 025141          178 VIIGDLA  184 (257)
Q Consensus       178 vIi~D~~  184 (257)
                      .|+.|+.
T Consensus        92 gIL~DLG   98 (285)
T 1wg8_A           92 GILADLG   98 (285)
T ss_dssp             EEEEECS
T ss_pred             EEEeCCc
Confidence            9999985

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.04  E-value=8.3e-06  Score=70.11  Aligned_cols=130  Identities=14%  Similarity=0.033  Sum_probs=80.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCe---EEEEc-chHHHHhcCCCce
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL---ELVIN-DARAELESRKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv---~i~~~-Da~~~l~~~~~~f  176 (257)
                      .+..+||||||+-|+.+..+++..++..|.+..+-.+.     ...+...   ..+.+   ++..+ |.++   ..+.++
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-----~~~P~~~---~~~Gv~~i~~~~G~Df~~---~~~~~~  140 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-----HEEPMLM---QSYGWNIVTMKSGVDVFY---KPSEIS  140 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-----SCCCCCC---CSTTGGGEEEECSCCGGG---SCCCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-----ccCCCcc---cCCCceEEEeeccCCccC---CCCCCC
Confidence            45679999999999999999986444455555553331     0111110   11344   44436 8765   224689


Q ss_pred             eEEEEcCCCCCCCCcc-cCCchHHHHHHHHcCcCCCCc-EEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025141          177 DVIIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEG-IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC  247 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgG-il~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  247 (257)
                      |+|++|.... ...+. .+.-+...+.. +.+.|+||| .+++..=.+    ..+.+.++++.|++.|..+.+
T Consensus       141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~-A~~~Lk~gG~~FvvKVFqg----~~~~~~~~l~~lk~~F~~vkv  207 (269)
T 2px2_A          141 DTLLCDIGES-SPSAEIEEQRTLRILEM-VSDWLSRGPKEFCIKILCP----YMPKVIEKLESLQRRFGGGLV  207 (269)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHH-HHHHHTTCCSEEEEEESCT----TSHHHHHHHHHHHHHHCCEEE
T ss_pred             CEEEeCCCCC-CCccHHHHHHHHHHHHH-HHHHhhcCCcEEEEEECCC----CchHHHHHHHHHHHHcCCEEE
Confidence            9999998642 21211 11222234554 568999999 888875222    125677888899999998884

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.88  E-value=8.9e-05  Score=63.02  Aligned_cols=132  Identities=15%  Similarity=0.081  Sum_probs=89.7

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~-Da~~~l~~~~~~fDvIi  180 (257)
                      ....||||||+.|+.+..++...++.+|.++|+-+.-.     ..+..-..+.-+.++++.+ |.+ ++  .+.++|.|+
T Consensus        78 ~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~gh-----e~P~~~~s~gwn~v~fk~gvDv~-~~--~~~~~Dtll  149 (267)
T 3p8z_A           78 PEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGH-----EEPVPMSTYGWNIVKLMSGKDVF-YL--PPEKCDTLL  149 (267)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTS-----CCCCCCCCTTTTSEEEECSCCGG-GC--CCCCCSEEE
T ss_pred             CCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCc-----cCcchhhhcCcCceEEEecccee-ec--CCccccEEE
Confidence            45699999999999999888887888999999965532     1122222233467899988 862 22  237799999


Q ss_pred             EcCCCCCCCCcc-cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEE
Q 025141          181 GDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCA  248 (257)
Q Consensus       181 ~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~  248 (257)
                      +|... ....|. .+--|...++. +.+.|++ |-+++..-+|   ..++ +.+.++.|+..|..+.+.
T Consensus       150 cDIge-Ss~~~~vE~~RtlrvLel-a~~wL~~-~~fc~KVl~p---y~p~-v~e~l~~lq~~fgg~lVR  211 (267)
T 3p8z_A          150 CDIGE-SSPSPTVEESRTIRVLKM-VEPWLKN-NQFCIKVLNP---YMPT-VIEHLERLQRKHGGMLVR  211 (267)
T ss_dssp             ECCCC-CCSCHHHHHHHHHHHHHH-HGGGCSS-CEEEEEESCC---CSHH-HHHHHHHHHHHHCCEEEC
T ss_pred             EecCC-CCCChhhhhhHHHHHHHH-HHHhccc-CCEEEEEccC---CChh-HHHHHHHHHHHhCCEeEe
Confidence            99875 211221 12223456676 6889998 7888887666   2333 447778888888877654

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.70  E-value=6.4e-05  Score=71.36  Aligned_cols=148  Identities=12%  Similarity=0.050  Sum_probs=88.1

Q ss_pred             CCCeEEEEeccchHHHHHHHhc----CC---------CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 025141          102 NPKTIFIMGGGEGSTAREILRH----KT---------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~----~~---------~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~  168 (257)
                      ...+|+|-.||+|++...+.++    ..         ...+.++|+++.+..+|+-++-+.+    .+.-++..+|...+
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg----~~~~~I~~~dtL~~  292 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG----LEYPRIDPENSLRF  292 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT----CSCCEEECSCTTCS
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC----CccccccccccccC
Confidence            3468999999999998766542    11         1369999999999999998876653    23446788887643


Q ss_pred             H-hc--CCCceeEEEEcCCCCCCC----------CcccCCchHHHHHHHHcCcC-------CCCcEEEEecCCCCCCCCh
Q 025141          169 L-ES--RKESYDVIIGDLADPIEG----------GPCYKLYTKSFYEFVVKPRL-------NPEGIFVTQAGPAGIFSHT  228 (257)
Q Consensus       169 l-~~--~~~~fDvIi~D~~~~~~~----------~p~~~L~t~ef~~~~~~~~L-------~pgGil~~~~~~~~~~~~~  228 (257)
                      - ..  ...+||+|+.+||-....          .+...-...-|++. +.+.|       +|||++++-... +++...
T Consensus       293 ~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~-~l~~Lk~~~~~l~~gGr~avVlP~-g~Lf~~  370 (530)
T 3ufb_A          293 PLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQL-IMRKLKRPGHGSDNGGRAAVVVPN-GTLFSD  370 (530)
T ss_dssp             CGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHH-HHHHBCCTTSSSSSCCEEEEEEEH-HHHHCC
T ss_pred             chhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHH-HHHHhhhhhhccCCCceEEEEecc-hhhhcc
Confidence            1 11  235799999999732110          00001112346666 34455       479987764311 111122


Q ss_pred             HHHHHHHHHHhhhCCceEEEeecCccc
Q 025141          229 EVFSCIYNTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       229 ~~~~~~~~~l~~~F~~v~~~~~~~~~~  255 (257)
                      ..-..+.+.|-+.+.-..++..++=-|
T Consensus       371 ~~~~~iRk~Lle~~~l~aII~LP~~~F  397 (530)
T 3ufb_A          371 GISARIKEELLKNFNLHTIVRLPEGVF  397 (530)
T ss_dssp             THHHHHHHHHHHHSEEEEEEECCTTTT
T ss_pred             chHHHHHHHHhhcCEEEEEEECCcccC
Confidence            223456666666665555655555444

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.58  E-value=8.1e-05  Score=67.16  Aligned_cols=59  Identities=8%  Similarity=0.112  Sum_probs=50.0

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~  168 (257)
                      ...||+||.|.|.+++.++......+|++||+|+..+...++.+  .     .++++++.+|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~--~-----~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF--E-----GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT--T-----TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc--c-----CCCEEEEECCccch
Confidence            47899999999999999998533368999999999999888765  1     36899999999765

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.57  E-value=9.3e-05  Score=64.79  Aligned_cols=133  Identities=14%  Similarity=0.061  Sum_probs=86.3

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~-Da~~~l~~~~~~fDvIi  180 (257)
                      ....||||||+.|+.+..++...++.+|.++|+-..-.+     .|..-..+.-+-+.++.+ |.+ ++.  +.++|+|+
T Consensus        94 ~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he-----~P~~~~ql~w~lV~~~~~~Dv~-~l~--~~~~D~iv  165 (321)
T 3lkz_A           94 PVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHE-----EPQLVQSYGWNIVTMKSGVDVF-YRP--SECCDTLL  165 (321)
T ss_dssp             CCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSC-----CCCCCCBTTGGGEEEECSCCTT-SSC--CCCCSEEE
T ss_pred             CCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCcc-----CcchhhhcCCcceEEEeccCHh-hCC--CCCCCEEE
Confidence            445999999999999998888878889999999654210     011000111133677766 653 232  26799999


Q ss_pred             EcCCCCCCCCcc-cCCchHHHHHHHHcCcCCCC-cEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEE
Q 025141          181 GDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPE-GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCA  248 (257)
Q Consensus       181 ~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pg-Gil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~  248 (257)
                      +|..... ..|. ..--|...++. +.+.|+++ |-+++..-+|   ..+ .+.+.++.|+..|..+.+.
T Consensus       166 cDigeSs-~~~~ve~~Rtl~vLel-~~~wL~~~~~~f~~KVl~p---Y~~-~v~e~l~~lq~~fgg~lvr  229 (321)
T 3lkz_A          166 CDIGESS-SSAEVEEHRTIRVLEM-VEDWLHRGPREFCVKVLCP---YMP-KVIEKMELLQRRYGGGLVR  229 (321)
T ss_dssp             ECCCCCC-SCHHHHHHHHHHHHHH-HHHHHTTCCCEEEEEESCT---TSH-HHHHHHHHHHHHHCCEEEC
T ss_pred             EECccCC-CChhhhhhHHHHHHHH-HHHHhccCCCcEEEEEcCC---CCh-HHHHHHHHHHHHhCCEeEe
Confidence            9997322 1221 11223345665 57789988 8999887665   223 3457888899999877664

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.54  E-value=0.00035  Score=62.59  Aligned_cols=124  Identities=16%  Similarity=0.217  Sum_probs=80.8

Q ss_pred             CCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-C-CceeEE
Q 025141          103 PKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K-ESYDVI  179 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~-~~fDvI  179 (257)
                      +.+|+++.||.|++...+.+..- ...|.++|+|+..++..+.+++         ...++.+|..++.... . ..+|+|
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~---------~~~~~~~Di~~~~~~~~~~~~~D~l   72 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---------HTQLLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECSCGGGCCHHHHHHHCCSEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc---------ccccccCCHHHccHhHcCcCCcCEE
Confidence            45899999999999998887521 3579999999999999999874         2346778877654211 1 269999


Q ss_pred             EEcCCC-CCC-CC-------cccCCchHHHHHHHHcCcCC--CCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          180 IGDLAD-PIE-GG-------PCYKLYTKSFYEFVVKPRLN--PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       180 i~D~~~-~~~-~~-------p~~~L~t~ef~~~~~~~~L~--pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      +.+++- +.+ .+       +...| -.++++.  .+.++  |.-+++=|+..   +.....+..+.+.|.+.
T Consensus        73 ~~gpPCq~fS~ag~~~g~~d~r~~l-~~~~~~~--i~~~~~~P~~~~~ENV~~---l~~~~~~~~i~~~l~~~  139 (343)
T 1g55_A           73 LMSPPCQPFTRIGRQGDMTDSRTNS-FLHILDI--LPRLQKLPKYILLENVKG---FEVSSTRDLLIQTIENC  139 (343)
T ss_dssp             EECCC------------------CH-HHHHHHH--GGGCSSCCSEEEEEEETT---GGGSHHHHHHHHHHHHT
T ss_pred             EEcCCCcchhhcCCcCCccCccchH-HHHHHHH--HHHhcCCCCEEEEeCCcc---ccCHHHHHHHHHHHHHC
Confidence            999872 111 01       11112 2466664  35677  88777655422   22345677888888764

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.54  E-value=0.00014  Score=65.02  Aligned_cols=75  Identities=23%  Similarity=0.262  Sum_probs=60.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH---hcCC--Cc
Q 025141          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ESRK--ES  175 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l---~~~~--~~  175 (257)
                      +...++|..+|.|+-+..+++. .+..+|+++|.||++++.++ .+       .++|+++++++..++.   ...+  ++
T Consensus        57 pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-------~~~Rv~lv~~nF~~l~~~L~~~g~~~~  128 (347)
T 3tka_A           57 PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-------DDPRFSIIHGPFSALGEYVAERDLIGK  128 (347)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-------CCTTEEEEESCGGGHHHHHHHTTCTTC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-------cCCcEEEEeCCHHHHHHHHHhcCCCCc
Confidence            3468999999999999999986 34579999999999999995 33       2479999999887653   3322  36


Q ss_pred             eeEEEEcCC
Q 025141          176 YDVIIGDLA  184 (257)
Q Consensus       176 fDvIi~D~~  184 (257)
                      +|.|+.|+-
T Consensus       129 vDgILfDLG  137 (347)
T 3tka_A          129 IDGILLDLG  137 (347)
T ss_dssp             EEEEEEECS
T ss_pred             ccEEEECCc
Confidence            999999985

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.39  E-value=9.6e-05  Score=58.35  Aligned_cols=64  Identities=16%  Similarity=0.106  Sum_probs=45.5

Q ss_pred             CCCCeEEEEeccch-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ..+.+||+||||.| ..+..|.++.+ ..|+++||+|..++                   ++.+|.++-..+.-+.||+|
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g-~~V~atDInp~Av~-------------------~v~dDiF~P~~~~Y~~~DLI   93 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSK-VDLVLTDIKPSHGG-------------------IVRDDITSPRMEIYRGAALI   93 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSC-CEEEEECSSCSSTT-------------------EECCCSSSCCHHHHTTEEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCC-CeEEEEECCccccc-------------------eEEccCCCCcccccCCcCEE
Confidence            34679999999999 58988887544 58999999987755                   45556544222222589999


Q ss_pred             -EEcCC
Q 025141          180 -IGDLA  184 (257)
Q Consensus       180 -i~D~~  184 (257)
                       -+.++
T Consensus        94 YsirPP   99 (153)
T 2k4m_A           94 YSIRPP   99 (153)
T ss_dssp             EEESCC
T ss_pred             EEcCCC
Confidence             55544

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.37  E-value=0.0012  Score=60.10  Aligned_cols=112  Identities=11%  Similarity=-0.025  Sum_probs=69.4

Q ss_pred             CCeEEEEeccchHHHHHHHhc-----------------CCCcEEEEEECC-----------HHHHHHHHhhhhhccCCCC
Q 025141          103 PKTIFIMGGGEGSTAREILRH-----------------KTVEKVVMCDID-----------EEVVEFCKSYLVVNKEAFS  154 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~-----------------~~~~~v~~VEid-----------~~vi~~a~~~~~~~~~~~~  154 (257)
                      +-+|+|+||++|..+..+...                 ++.-+|...|+-           |...+..++..   +   .
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~---g---~  126 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN---G---R  126 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT---C---C
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc---c---C
Confidence            678999999999977655542                 233467777875           33333322211   1   1


Q ss_pred             CCCeEEEEcchHHHHhc--CCCceeEEEEcCCCCCCCCcccCCch---------------------------------HH
Q 025141          155 DPRLELVINDARAELES--RKESYDVIIGDLADPIEGGPCYKLYT---------------------------------KS  199 (257)
Q Consensus       155 ~~rv~i~~~Da~~~l~~--~~~~fDvIi~D~~~~~~~~p~~~L~t---------------------------------~e  199 (257)
                      ..+-.++.+.+..|-..  +.+.+|+|++...-+|....+..|..                                 ..
T Consensus       127 ~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~  206 (384)
T 2efj_A          127 KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT  206 (384)
T ss_dssp             CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence            12346777777777654  45889999999887774322222211                                 12


Q ss_pred             HHHHHHcCcCCCCcEEEEecCC
Q 025141          200 FYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       200 f~~~~~~~~L~pgGil~~~~~~  221 (257)
                      |++. .++.|+|||.+++....
T Consensus       207 FL~~-Ra~eL~pGG~mvl~~~g  227 (384)
T 2efj_A          207 FLRI-HSEELISRGRMLLTFIC  227 (384)
T ss_dssp             HHHH-HHHHEEEEEEEEEEEEC
T ss_pred             HHHH-HHHHhccCCeEEEEEec
Confidence            3565 58999999999988643

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.30  E-value=0.0026  Score=56.65  Aligned_cols=124  Identities=13%  Similarity=0.101  Sum_probs=83.6

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      ..+++++.||.|++...+.+. +...+.++|+|+..++..+.+++..      .     .+|..++....-..+|+|+.+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~------~-----~~Di~~~~~~~~~~~D~l~~g   78 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK------P-----EGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC------C-----BSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCC------C-----cCCHHHcCHhhCCCCCEEEEC
Confidence            468999999999999998875 5678899999999999999987521      1     588877654433569999999


Q ss_pred             CCC-CCC-C-------CcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          183 LAD-PIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       183 ~~~-~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      ++- +.+ .       .+...| -.++++. + +.++|.-+++=|...-........+..+.+.|++.
T Consensus        79 pPCQ~fS~ag~~~g~~d~r~~L-~~~~~r~-i-~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~  143 (327)
T 2c7p_A           79 FPCQAFSISGKQKGFEDSRGTL-FFDIARI-V-REKKPKVVFMENVKNFASHDNGNTLEVVKNTMNEL  143 (327)
T ss_dssp             CCCTTTCTTSCCCGGGSTTSCH-HHHHHHH-H-HHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHT
T ss_pred             CCCCCcchhcccCCCcchhhHH-HHHHHHH-H-HhccCcEEEEeCcHHHHhccccHHHHHHHHHHHhC
Confidence            872 221 1       111122 2567775 4 46799877665652110011235677888888765

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.28  E-value=0.00036  Score=63.20  Aligned_cols=71  Identities=10%  Similarity=0.085  Sum_probs=54.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|||||++.|+.+..+++. + .+|++||+.+.--.       +.    .+++|+++.+|++.+.. ...++|+|+
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~r-g-~~V~aVD~~~l~~~-------l~----~~~~V~~~~~d~~~~~~-~~~~~D~vv  275 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKR-N-MWVYSVDNGPMAQS-------LM----DTGQVTWLREDGFKFRP-TRSNISWMV  275 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T-CEEEEECSSCCCHH-------HH----TTTCEEEECSCTTTCCC-CSSCEEEEE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHC-C-CEEEEEEhhhcChh-------hc----cCCCeEEEeCccccccC-CCCCcCEEE
Confidence            45689999999999999999986 3 59999997542211       11    35899999999988642 246799999


Q ss_pred             EcCCC
Q 025141          181 GDLAD  185 (257)
Q Consensus       181 ~D~~~  185 (257)
                      +|...
T Consensus       276 sDm~~  280 (375)
T 4auk_A          276 CDMVE  280 (375)
T ss_dssp             ECCSS
T ss_pred             EcCCC
Confidence            99863

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.06  E-value=0.0016  Score=56.99  Aligned_cols=46  Identities=11%  Similarity=0.077  Sum_probs=40.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV  148 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~  148 (257)
                      .+...|||++||+|+++.++++..  .+++++|+++.+++.|++++..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHH
Confidence            456799999999999999998863  5899999999999999998753

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.05  E-value=0.002  Score=58.39  Aligned_cols=124  Identities=15%  Similarity=0.100  Sum_probs=81.0

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-------CCCce
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-------RKESY  176 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-------~~~~f  176 (257)
                      -+|+++.||.|++...+.+. +...+.++|+|+...+..+.+++         ...++.+|..+....       ....+
T Consensus         3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~~---------~~~~~~~DI~~~~~~~~~~~~~~~~~~   72 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINFP---------RSLHVQEDVSLLNAEIIKGFFKNDMPI   72 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHCT---------TSEEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhCC---------CCceEecChhhcCHHHHHhhcccCCCe
Confidence            47999999999999888775 46678899999999999998764         456777887665321       24679


Q ss_pred             eEEEEcCCC-CCC-CC------cccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          177 DVIIGDLAD-PIE-GG------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       177 DvIi~D~~~-~~~-~~------p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      |+|+.+++- +.+ .+      +...| -.+|++.  -+.++|.-+++=|+..-........+..+. .|.+.
T Consensus        73 D~i~ggpPCQ~fS~ag~~~~~d~r~~L-~~~~~~~--v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~  141 (376)
T 3g7u_A           73 DGIIGGPPCQGFSSIGKGNPDDSRNQL-YMHFYRL--VSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSG  141 (376)
T ss_dssp             CEEEECCCCCTTC-------CHHHHHH-HHHHHHH--HHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHT
T ss_pred             eEEEecCCCCCcccccCCCCCCchHHH-HHHHHHH--HHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcC
Confidence            999999873 221 01      11112 2466664  356899877776653211011234566666 66654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.92  E-value=0.014  Score=50.15  Aligned_cols=136  Identities=15%  Similarity=0.039  Sum_probs=82.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-------CCCcEEEEEECCHHHH---------------------------H-H--HH
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCDIDEEVV---------------------------E-F--CK  143 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-------~~~~~v~~VEid~~vi---------------------------~-~--a~  143 (257)
                      .-|..|+++|+--|..+..++..       ....+|.++|.-.-+.                           + +  .+
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            55789999999999987765431       2346899998321111                           1 1  11


Q ss_pred             hhhhhccCCCCCCCeEEEEcchHHHHhc-----CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          144 SYLVVNKEAFSDPRLELVINDARAELES-----RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       144 ~~~~~~~~~~~~~rv~i~~~Da~~~l~~-----~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +++...  +..+++++++.+++.+-+..     ...++|+|.+|.- .  ..     -+...++. +..+|+|||++++.
T Consensus       148 ~~~~~~--g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D-~--Y~-----~t~~~le~-~~p~l~~GGvIv~D  216 (257)
T 3tos_A          148 ECSDFF--GHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD-L--YE-----PTKAVLEA-IRPYLTKGSIVAFD  216 (257)
T ss_dssp             HTTSTT--TTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC-C--HH-----HHHHHHHH-HGGGEEEEEEEEES
T ss_pred             hhhhhc--CCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc-c--cc-----hHHHHHHH-HHHHhCCCcEEEEc
Confidence            111111  11247999999999988754     2357999999972 1  11     25678888 78999999999985


Q ss_pred             c-CCCCCCCChHHHHHHHHHHhhhCCceEEEee
Q 025141          219 A-GPAGIFSHTEVFSCIYNTLRQVFKCGCCALF  250 (257)
Q Consensus       219 ~-~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~  250 (257)
                      - +.+. |  +...+++...+.+.--.+..+.+
T Consensus       217 D~~~~~-w--~G~~~A~~ef~~~~~~~i~~~p~  246 (257)
T 3tos_A          217 ELDNPK-W--PGENIAMRKVLGLDHAPLRLLPG  246 (257)
T ss_dssp             STTCTT-C--THHHHHHHHHTCTTSSCCEECTT
T ss_pred             CCCCCC-C--hHHHHHHHHHHhhCCCeEEEccC
Confidence            4 2332 2  23444444444443323344333

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.86  E-value=0.0016  Score=59.19  Aligned_cols=118  Identities=11%  Similarity=0.053  Sum_probs=69.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHh--------c-------CCCcEEEEEECCHHHHHHHHhhhhhccC-----CC---CCCC
Q 025141          101 PNPKTIFIMGGGEGSTAREILR--------H-------KTVEKVVMCDIDEEVVEFCKSYLVVNKE-----AF---SDPR  157 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~--------~-------~~~~~v~~VEid~~vi~~a~~~~~~~~~-----~~---~~~r  157 (257)
                      |.+-+|+|+|||+|..+..+..        +       ++.-+|...|+-..-....=+.++....     .+   ...+
T Consensus        51 ~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~  130 (374)
T 3b5i_A           51 PPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNR  130 (374)
T ss_dssp             CCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCB
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCC
Confidence            4467899999999998766521        1       2345677777755443332222221100     00   0112


Q ss_pred             eEEEEcchHHHHhc--CCCceeEEEEcCCCCCCCCcccCCc-------------------------h-------HHHHHH
Q 025141          158 LELVINDARAELES--RKESYDVIIGDLADPIEGGPCYKLY-------------------------T-------KSFYEF  203 (257)
Q Consensus       158 v~i~~~Da~~~l~~--~~~~fDvIi~D~~~~~~~~p~~~L~-------------------------t-------~ef~~~  203 (257)
                      -.++.+.+..|-..  +.+.+|+|++...-+|....+..+.                         .       ..|++.
T Consensus       131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~  210 (374)
T 3b5i_A          131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA  210 (374)
T ss_dssp             CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            23556666665433  3588999999998777432222221                         0       235666


Q ss_pred             HHcCcCCCCcEEEEec
Q 025141          204 VVKPRLNPEGIFVTQA  219 (257)
Q Consensus       204 ~~~~~L~pgGil~~~~  219 (257)
                       .++.|+|||.+++..
T Consensus       211 -ra~eL~pGG~mvl~~  225 (374)
T 3b5i_A          211 -RAAEVKRGGAMFLVC  225 (374)
T ss_dssp             -HHHHEEEEEEEEEEE
T ss_pred             -HHHHhCCCCEEEEEE
Confidence             689999999999876

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.71  E-value=0.0017  Score=58.64  Aligned_cols=115  Identities=10%  Similarity=0.048  Sum_probs=75.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc----------------CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH----------------KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND  164 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~----------------~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D  164 (257)
                      +++-+|+|+||++|..+..+...                ++.-+|...|+-..-....-+.++...   ...+-.++.+.
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~---~~~~~~f~~gv  126 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---DVDGVCFINGV  126 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---SCTTCEEEEEE
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc---ccCCCEEEEec
Confidence            45678999999999755432221                334578888998887777776655211   11144677778


Q ss_pred             hHHHHhc--CCCceeEEEEcCCCCCCCCccc--------------------CCch-------HHHHHHHHcCcCCCCcEE
Q 025141          165 ARAELES--RKESYDVIIGDLADPIEGGPCY--------------------KLYT-------KSFYEFVVKPRLNPEGIF  215 (257)
Q Consensus       165 a~~~l~~--~~~~fDvIi~D~~~~~~~~p~~--------------------~L~t-------~ef~~~~~~~~L~pgGil  215 (257)
                      +..|-..  +.+.+|+|++...-+|-...+.                    ..|.       ..|++. -++.|+|||.+
T Consensus       127 pgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~-Ra~EL~pGG~m  205 (359)
T 1m6e_X          127 PGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRC-RAQEVVPGGRM  205 (359)
T ss_dssp             ESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHH-HHHHBCTTCEE
T ss_pred             chhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCceE
Confidence            7777644  4588999999988666322111                    1332       245665 58999999999


Q ss_pred             EEec
Q 025141          216 VTQA  219 (257)
Q Consensus       216 ~~~~  219 (257)
                      ++..
T Consensus       206 vl~~  209 (359)
T 1m6e_X          206 VLTI  209 (359)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9875

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.52  E-value=0.0037  Score=55.25  Aligned_cols=98  Identities=14%  Similarity=0.148  Sum_probs=66.3

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.++||++|+|+ |.++.++++..+. +|++++.+++-.+.+++.-.       +.-+.....|..+.+++..+.+|+|
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa-------~~~i~~~~~~~~~~~~~~~g~~d~v  236 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGA-------EVAVNARDTDPAAWLQKEIGGAHGV  236 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCC-------CEEEeCCCcCHHHHHHHhCCCCCEE
Confidence            3568999999875 7788888887764 99999999999999887421       1001111135555555433579999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +.....            .+.++. +.+.|+++|.++.-.
T Consensus       237 id~~g~------------~~~~~~-~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          237 LVTAVS------------PKAFSQ-AIGMVRRGGTIALNG  263 (340)
T ss_dssp             EESSCC------------HHHHHH-HHHHEEEEEEEEECS
T ss_pred             EEeCCC------------HHHHHH-HHHHhccCCEEEEeC
Confidence            865421            234566 577899999988643

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.42  E-value=0.0062  Score=54.51  Aligned_cols=98  Identities=13%  Similarity=0.124  Sum_probs=63.5

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDv  178 (257)
                      .+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++.-.       +.-+.....|..+.+++ ..+.+|+
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~vi~~~~~~~~~~~~~~~~gg~D~  261 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-------THVINSKTQDPVAAIKEITDGGVNF  261 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-------CEEecCCccCHHHHHHHhcCCCCcE
Confidence            3468999999876 6677788876665589999999999999886421       00011011243444433 3347999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+-...     .       .+.++. +.+.|+++|.++.-
T Consensus       262 vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          262 ALESTG-----S-------PEILKQ-GVDALGILGKIAVV  288 (371)
T ss_dssp             EEECSC-----C-------HHHHHH-HHHTEEEEEEEEEC
T ss_pred             EEECCC-----C-------HHHHHH-HHHHHhcCCEEEEe
Confidence            985432     1       234566 57899999998864

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.42  E-value=0.021  Score=50.76  Aligned_cols=98  Identities=14%  Similarity=0.084  Sum_probs=65.7

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-----EcchHHHHhc-C-
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-----INDARAELES-R-  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~-----~~Da~~~l~~-~-  172 (257)
                      .+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. . .      .-+...     ..|..+.+++ + 
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~-~------~~~~~~~~~~~~~~~~~~v~~~t~  249 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C-P------EVVTHKVERLSAEESAKKIVESFG  249 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C-T------TCEEEECCSCCHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c-h------hcccccccccchHHHHHHHHHHhC
Confidence            4568999999865 66778888877765699999999999999986 2 1      112222     1334444433 2 


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ...+|+|+-...     .       .+.++. +.+.|+++|.++.-.
T Consensus       250 g~g~Dvvid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          250 GIEPAVALECTG-----V-------ESSIAA-AIWAVKFGGKVFVIG  283 (363)
T ss_dssp             SCCCSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEECC
T ss_pred             CCCCCEEEECCC-----C-------hHHHHH-HHHHhcCCCEEEEEc
Confidence            357999985432     1       234556 577899999998643

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.38  E-value=0.023  Score=49.90  Aligned_cols=123  Identities=12%  Similarity=0.107  Sum_probs=81.7

Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~  184 (257)
                      +|+++-||.|++..-+.+. +...+.++|+|+...+.-+.+++          -+++.+|..+.-...-.+.|+|+.-++
T Consensus         2 kvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~~----------~~~~~~DI~~i~~~~~~~~D~l~ggpP   70 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHS----------AKLIKGDISKISSDEFPKCDGIIGGPP   70 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHCC----------SEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred             eEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCC----------CCcccCChhhCCHhhCCcccEEEecCC
Confidence            7999999999998877664 56678899999999999888764          156788877754333367899988776


Q ss_pred             C-CCC--------CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          185 D-PIE--------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       185 ~-~~~--------~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      - +.+        ..+...| -.++++.  -+.++|.-+++=|+..-......+.+..+++.|.+.
T Consensus        71 CQ~fS~ag~~~g~~d~R~~L-~~~~~r~--i~~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~  133 (331)
T 3ubt_Y           71 SQSWSEGGSLRGIDDPRGKL-FYEYIRI--LKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNA  133 (331)
T ss_dssp             GGGTEETTEECCTTCGGGHH-HHHHHHH--HHHHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCccCCCCchhHH-HHHHHHH--HhccCCeEEEeeeecccccccccchhhhhhhhhccC
Confidence            2 111        1121123 2466664  356899877765652110012346778888888765

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.30  E-value=0.042  Score=48.85  Aligned_cols=123  Identities=16%  Similarity=0.186  Sum_probs=80.1

Q ss_pred             CeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CCceeEEE
Q 025141          104 KTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVII  180 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~~fDvIi  180 (257)
                      -+++++.||.|++..-+.+.. +...|.++|+|+...+..+.+++.         ..++.+|..+.....  ...+|+|+
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~---------~~~~~~DI~~~~~~~~~~~~~D~l~   74 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE---------TNLLNRNIQQLTPQVIKKWNVDTIL   74 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT---------SCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC---------CceeccccccCCHHHhccCCCCEEE
Confidence            479999999999998877642 125688999999999999988752         235667766543221  13699999


Q ss_pred             EcCCC-CCC--------CCcccCCchHHHHHHHHcCcCC-CCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          181 GDLAD-PIE--------GGPCYKLYTKSFYEFVVKPRLN-PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       181 ~D~~~-~~~--------~~p~~~L~t~ef~~~~~~~~L~-pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      ..++- +.+        ..+...|+ .++++. + +.++ |.-+++=|..  + +.....+..+.+.|++.
T Consensus        75 ggpPCQ~fS~ag~~~~~~d~r~~L~-~~~~r~-i-~~~~~P~~~vlENV~--g-l~~~~~~~~i~~~l~~~  139 (333)
T 4h0n_A           75 MSPPCQPFTRNGKYLDDNDPRTNSF-LYLIGI-L-DQLDNVDYILMENVK--G-FENSTVRNLFIDKLKEC  139 (333)
T ss_dssp             ECCCCCCSEETTEECCTTCTTSCCH-HHHHHH-G-GGCTTCCEEEEEECT--T-GGGSHHHHHHHHHHHHT
T ss_pred             ecCCCcchhhhhhccCCcCcccccH-HHHHHH-H-HHhcCCCEEEEecch--h-hhhhhHHHHHHHHHHhC
Confidence            98872 111        11222343 567775 4 4565 9877766652  2 23345577788888764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.27  E-value=0.036  Score=49.23  Aligned_cols=95  Identities=14%  Similarity=0.128  Sum_probs=62.2

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE------cchHHHHhc-C
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI------NDARAELES-R  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~------~Da~~~l~~-~  172 (257)
                      .+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++.-.       +   .++.      .|..+-++. .
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~---~vi~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA-------D---LVLQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------S---EEEECSSCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-------C---EEEcCcccccchHHHHHHHHh
Confidence            4568999999875 6677788887665589999999998898886411       1   1121      222223322 2


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .+.+|+|+-...     .       .+.++. +.+.|+++|.++.-
T Consensus       240 ~~g~D~vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          240 GCKPEVTIECTG-----A-------EASIQA-GIYATRSGGTLVLV  272 (356)
T ss_dssp             TSCCSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEEC
T ss_pred             CCCCCEEEECCC-----C-------hHHHHH-HHHHhcCCCEEEEE
Confidence            357999985432     1       133455 56789999998864

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.19  E-value=0.044  Score=51.25  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=84.8

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh------------
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE------------  170 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~------------  170 (257)
                      .-+++++-||.|++..-+.+. +...|.++|+|+...+.-+.++..      .|...++.+|.+++..            
T Consensus        88 ~~~viDLFaG~GGlslG~~~a-G~~~v~avE~d~~A~~ty~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~  160 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI-GGQCVFTSEWNKHAVRTYKANHYC------DPATHHFNEDIRDITLSHQEGVSDEAAA  160 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT-TEEEEEEECCCHHHHHHHHHHSCC------CTTTCEEESCTHHHHCTTCTTSCHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhccc------CCCcceeccchhhhhhccccccchhhHH
Confidence            358999999999999888774 556689999999999998887742      3456678899988752            


Q ss_pred             ----cCCCceeEEEEcCCC-CCC-CC----------------cccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCCh
Q 025141          171 ----SRKESYDVIIGDLAD-PIE-GG----------------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHT  228 (257)
Q Consensus       171 ----~~~~~fDvIi~D~~~-~~~-~~----------------p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~  228 (257)
                          .....+|+|+..+|- +.+ .+                +...| -.++++. + +.++|.-+++=|+..-......
T Consensus       161 ~~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~L-f~e~~ri-I-~~~rPk~fvlENV~gl~s~~~g  237 (482)
T 3me5_A          161 EHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTL-FFDVVRI-I-DARRPAMFVLENVKNLKSHDKG  237 (482)
T ss_dssp             HHHHHHSCCCSEEEEECCCCCC------------------CTTTTSH-HHHHHHH-H-HHHCCSEEEEEEETTTTTGGGG
T ss_pred             hhhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccH-HHHHHHH-H-HHcCCcEEEEeCcHHHhcccCC
Confidence                122568999988873 221 01                11122 2466664 3 4678987776665321101224


Q ss_pred             HHHHHHHHHHhhh
Q 025141          229 EVFSCIYNTLRQV  241 (257)
Q Consensus       229 ~~~~~~~~~l~~~  241 (257)
                      ..+..+++.|.+.
T Consensus       238 ~~f~~i~~~L~~l  250 (482)
T 3me5_A          238 KTFRIIMQTLDEL  250 (482)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHhcC
Confidence            5677888888764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.15  E-value=0.0077  Score=53.49  Aligned_cols=98  Identities=10%  Similarity=0.099  Sum_probs=63.7

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CC-Ccee
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~-~~fD  177 (257)
                      .+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++.-.       +.-+.....|..+.+++ +. ..+|
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-------~~vi~~~~~~~~~~v~~~t~g~g~D  237 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA-------TDIINYKNGDIVEQILKATDGKGVD  237 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC-------CEEECGGGSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------ceEEcCCCcCHHHHHHHHcCCCCCC
Confidence            4568999999875 6677888887775589999999998899887521       10011112344454443 33 4699


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+-....     +       +.++. +.+.|+++|.++.-
T Consensus       238 ~v~d~~g~-----~-------~~~~~-~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          238 KVVIAGGD-----V-------HTFAQ-AVKMIKPGSDIGNV  265 (352)
T ss_dssp             EEEECSSC-----T-------THHHH-HHHHEEEEEEEEEC
T ss_pred             EEEECCCC-----h-------HHHHH-HHHHHhcCCEEEEe
Confidence            99854321     1       23455 56789999998854

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.15  E-value=0.02  Score=51.27  Aligned_cols=99  Identities=14%  Similarity=0.153  Sum_probs=66.1

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----CCCc
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RKES  175 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~----~~~~  175 (257)
                      .+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. ...      .-+.....|..+.++.    +.+.
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~------~vi~~~~~~~~~~i~~~~~~~~gg  253 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV-GAT------ATVDPSAGDVVEAIAGPVGLVPGG  253 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-TCS------EEECTTSSCHHHHHHSTTSSSTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CCC------EEECCCCcCHHHHHHhhhhccCCC
Confidence            4568999999865 66777888877766999999999999998874 211      0011112355555543    3358


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+|+-...     .       .+.++. +.+.|+++|.++.-.
T Consensus       254 ~Dvvid~~G-----~-------~~~~~~-~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          254 VDVVIECAG-----V-------AETVKQ-STRLAKAGGTVVILG  284 (370)
T ss_dssp             EEEEEECSC-----C-------HHHHHH-HHHHEEEEEEEEECS
T ss_pred             CCEEEECCC-----C-------HHHHHH-HHHHhccCCEEEEEe
Confidence            999985432     1       234566 577899999988643

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.09  E-value=0.011  Score=50.38  Aligned_cols=47  Identities=19%  Similarity=0.172  Sum_probs=41.3

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV  148 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~  148 (257)
                      ..+...|||..||+|+++.++.+..  .+++++|+++..++.+++++..
T Consensus       210 ~~~~~~vlD~f~GsGtt~~~a~~~g--r~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          210 SNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHh
Confidence            3566789999999999999999863  6999999999999999998753

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.00  E-value=0.042  Score=49.18  Aligned_cols=94  Identities=20%  Similarity=0.251  Sum_probs=60.4

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.++||++|+|+ |.++.++++..+ .+|++++.+++-.+.+++. ...         .++..+-.++++...+.+|+|
T Consensus       193 ~~g~~VlV~GaG~vG~~aiqlak~~G-a~Vi~~~~~~~~~~~a~~l-Ga~---------~vi~~~~~~~~~~~~~g~Dvv  261 (369)
T 1uuf_A          193 GPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKAL-GAD---------EVVNSRNADEMAAHLKSFDFI  261 (369)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHH-TCS---------EEEETTCHHHHHTTTTCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCc---------EEeccccHHHHHHhhcCCCEE
Confidence            3468999999875 667778887766 4799999999988888863 211         112111123343333679999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +-....+.            .++. +.+.|+++|.++.-
T Consensus       262 id~~g~~~------------~~~~-~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          262 LNTVAAPH------------NLDD-FTTLLKRDGTMTLV  287 (369)
T ss_dssp             EECCSSCC------------CHHH-HHTTEEEEEEEEEC
T ss_pred             EECCCCHH------------HHHH-HHHHhccCCEEEEe
Confidence            85443210            1344 56789999988754

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.97  E-value=0.0066  Score=51.90  Aligned_cols=62  Identities=11%  Similarity=0.094  Sum_probs=43.7

Q ss_pred             CeEEEEcchHHHHhcCC-CceeEEEEcCCCCCCCCcccCC--------chHHHHHHHHcCcCCCCcEEEEec
Q 025141          157 RLELVINDARAELESRK-ESYDVIIGDLADPIEGGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       157 rv~i~~~Da~~~l~~~~-~~fDvIi~D~~~~~~~~p~~~L--------~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ..+++++|++++++... +++|+|++|||-..........        +..++++. ++++|+|+|.++++.
T Consensus         4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~-~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDK-VLDKLDKDGSLYIFN   74 (260)
T ss_dssp             SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cCeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHH-HHHHhcCCeEEEEEc
Confidence            45789999999998744 6899999999732210000011        34567777 689999999998874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.87  E-value=0.018  Score=50.81  Aligned_cols=98  Identities=14%  Similarity=0.213  Sum_probs=63.7

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~fD  177 (257)
                      .+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++.-.       + .+--...|..+.+++ + ...+|
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa-------~-~~i~~~~~~~~~v~~~t~g~g~d  241 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA-------D-AAVKSGAGAADAIRELTGGQGAT  241 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC-------S-EEEECSTTHHHHHHHHHGGGCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------C-EEEcCCCcHHHHHHHHhCCCCCe
Confidence            4568999999865 6677777776545799999999999999987421       1 111111233444433 2 24799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+-...     .       .+.++. +.+.|+++|.++.-.
T Consensus       242 ~v~d~~G-----~-------~~~~~~-~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          242 AVFDFVG-----A-------QSTIDT-AQQVVAVDGHISVVG  270 (345)
T ss_dssp             EEEESSC-----C-------HHHHHH-HHHHEEEEEEEEECS
T ss_pred             EEEECCC-----C-------HHHHHH-HHHHHhcCCEEEEEC
Confidence            9885432     1       234566 577899999988643

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.84  E-value=0.0091  Score=52.82  Aligned_cols=67  Identities=24%  Similarity=0.294  Sum_probs=47.4

Q ss_pred             CCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcc-cC-------CchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          154 SDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPC-YK-------LYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       154 ~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~p~-~~-------L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      ...+.+++++|+++.++.. .+++|+|++|||-.....-. ..       -+..+.++. ++++|+|||.++++.+.
T Consensus        11 ~~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~-~~rvLk~~G~i~i~~~d   86 (323)
T 1boo_A           11 TTSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKV-VNKKLKPDGSFVVDFGG   86 (323)
T ss_dssp             ECSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEECC
T ss_pred             ecCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHH-HHHHCcCCcEEEEEECC
Confidence            4568899999999998764 46899999999732210000 00       123567777 68999999999998753

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.75  E-value=0.056  Score=47.95  Aligned_cols=137  Identities=17%  Similarity=0.175  Sum_probs=81.3

Q ss_pred             CCCeEEEEeccchHHHHHHHhcC-CCcEE-EEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025141          102 NPKTIFIMGGGEGSTAREILRHK-TVEKV-VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v-~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD  177 (257)
                      ++-+++++.||.|++..-+.+.. +...+ .++|+|+...+..+.+++..          ++.+|..+.-..  ....+|
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~----------~~~~DI~~~~~~~i~~~~~D   78 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE----------VQVKNLDSISIKQIESLNCN   78 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC----------CBCCCTTTCCHHHHHHTCCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC----------cccCChhhcCHHHhccCCCC
Confidence            45689999999999998887742 13567 79999999999999987521          334555443211  012689


Q ss_pred             EEEEcCCC-CC--C--------CCcccCCchHHHHHHHHcCcC--CCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCc
Q 025141          178 VIIGDLAD-PI--E--------GGPCYKLYTKSFYEFVVKPRL--NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC  244 (257)
Q Consensus       178 vIi~D~~~-~~--~--------~~p~~~L~t~ef~~~~~~~~L--~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~  244 (257)
                      +|+..++- +.  +        ..+...| -.++++. +-+.+  +|.-+++=|..  + +...+.+..+.+.|++.-=.
T Consensus        79 il~ggpPCQ~fs~S~ag~~~~~~d~r~~L-~~~~~r~-~i~~~~~~P~~~~lENV~--g-l~~~~~~~~i~~~l~~~GY~  153 (327)
T 3qv2_A           79 TWFMSPPCQPYNNSIMSKHKDINDPRAKS-VLHLYRD-ILPYLINKPKHIFIENVP--L-FKESLVFKEIYNILIKNQYY  153 (327)
T ss_dssp             EEEECCCCTTCSHHHHTTTCTTTCGGGHH-HHHHHHT-TGGGCSSCCSEEEEEECG--G-GGGSHHHHHHHHHHHHTTCE
T ss_pred             EEEecCCccCcccccCCCCCCCccccchh-HHHHHHH-HHHHhccCCCEEEEEchh--h-hcChHHHHHHHHHHHhCCCE
Confidence            99998873 22  1        0111111 1345551 12355  68766665652  2 23345677888888765323


Q ss_pred             eEEEeecCc
Q 025141          245 GCCALFSSY  253 (257)
Q Consensus       245 v~~~~~~~~  253 (257)
                      +........
T Consensus       154 v~~~vl~a~  162 (327)
T 3qv2_A          154 IKDIICSPI  162 (327)
T ss_dssp             EEEEEECGG
T ss_pred             EEEEEEeHH
Confidence            333333333

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.66  E-value=0.05  Score=47.83  Aligned_cols=99  Identities=18%  Similarity=0.156  Sum_probs=64.1

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~fD  177 (257)
                      .+.++||++|+|+++ ++..++++....+|++++.+++-.+.+++.-.       +.-+.....|..+.+++ + ...+|
T Consensus       162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga-------~~~i~~~~~~~~~~v~~~t~g~g~d  234 (348)
T 4eez_A          162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGA-------DVTINSGDVNPVDEIKKITGGLGVQ  234 (348)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTC-------SEEEEC-CCCHHHHHHHHTTSSCEE
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCC-------eEEEeCCCCCHHHHhhhhcCCCCce
Confidence            456899999998654 45555654445799999999998888887532       11222233455555544 2 34688


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .++.+...            .+.+.. ..+.|+++|.++.-.
T Consensus       235 ~~~~~~~~------------~~~~~~-~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          235 SAIVCAVA------------RIAFEQ-AVASLKPMGKMVAVA  263 (348)
T ss_dssp             EEEECCSC------------HHHHHH-HHHTEEEEEEEEECC
T ss_pred             EEEEeccC------------cchhhe-eheeecCCceEEEEe
Confidence            88876532            233455 467899999887643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.61  E-value=0.02  Score=51.77  Aligned_cols=109  Identities=14%  Similarity=0.131  Sum_probs=64.5

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-HHHHhc-C-CCce
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELES-R-KESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da-~~~l~~-~-~~~f  176 (257)
                      ...++||++|+|+ |.++.++++..+..+|++++.+++-.+.++++ ...       -+.....|. .+.++. + ...+
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~-------~i~~~~~~~~~~~~~~~~~g~g~  255 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA-GFE-------TIDLRNSAPLRDQIDQILGKPEV  255 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT-TCE-------EEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCc-------EEcCCCcchHHHHHHHHhCCCCC
Confidence            3468999999876 77788888866655899999999999988864 110       111111232 333432 2 2369


Q ss_pred             eEEEEcCCCCCCCC-c-ccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGG-P-CYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~-p-~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+||-....+.... + ..++-....++. +.+.|+++|.+++-
T Consensus       256 Dvvid~~g~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gG~iv~~  298 (398)
T 2dph_A          256 DCGVDAVGFEAHGLGDEANTETPNGALNS-LFDVVRAGGAIGIP  298 (398)
T ss_dssp             EEEEECSCTTCBCSGGGTTSBCTTHHHHH-HHHHEEEEEEEECC
T ss_pred             CEEEECCCCccccccccccccccHHHHHH-HHHHHhcCCEEEEe
Confidence            99985543211000 0 000111234566 57789999998754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.61  E-value=0.023  Score=50.95  Aligned_cols=99  Identities=16%  Similarity=0.126  Sum_probs=64.0

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhc-CCCce
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~--~~Da~~~l~~-~~~~f  176 (257)
                      .+.++||++|+|. |.++.++++..+..+|++++.+++-.+.+++. ...      .-+...  ..|..+.+++ +.+.+
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~------~vi~~~~~~~~~~~~i~~~~~gg~  264 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF-GVN------EFVNPKDHDKPIQEVIVDLTDGGV  264 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT-TCC------EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc------EEEccccCchhHHHHHHHhcCCCC
Confidence            3468999999864 66777778776655899999999999998864 110      000000  1344444543 33589


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCC-cEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gil~~~~  219 (257)
                      |+|+-...     .       .+.++. +.+.|+++ |.++.-.
T Consensus       265 D~vid~~g-----~-------~~~~~~-~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          265 DYSFECIG-----N-------VSVMRA-ALECCHKGWGTSVIVG  295 (378)
T ss_dssp             SEEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECS
T ss_pred             CEEEECCC-----C-------HHHHHH-HHHHhhccCCEEEEEc
Confidence            99985432     1       244566 57799996 9888643

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.53  E-value=0.069  Score=47.20  Aligned_cols=97  Identities=13%  Similarity=0.094  Sum_probs=60.9

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-C----C
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-R----K  173 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~-~----~  173 (257)
                      .+.++||++|+|+ |..+.++++..+. +|++++.+++-.+.+++.-.       +.-+.... .|..+.+.. .    .
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa-------~~~~~~~~~~~~~~~i~~~~~~~~g  238 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGA-------DVTLVVDPAKEEESSIIERIRSAIG  238 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTC-------SEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCC-------CEEEcCcccccHHHHHHHHhccccC
Confidence            4568999999865 6667777776664 69999999999998886421       10011110 233333332 2    3


Q ss_pred             CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ..+|+|+-....            ...++. +.+.|+++|.++.-
T Consensus       239 ~g~D~vid~~g~------------~~~~~~-~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          239 DLPNVTIDCSGN------------EKCITI-GINITRTGGTLMLV  270 (352)
T ss_dssp             SCCSEEEECSCC------------HHHHHH-HHHHSCTTCEEEEC
T ss_pred             CCCCEEEECCCC------------HHHHHH-HHHHHhcCCEEEEE
Confidence            569999854321            123455 56789999998864

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.52  E-value=0.016  Score=50.48  Aligned_cols=67  Identities=22%  Similarity=0.129  Sum_probs=43.6

Q ss_pred             CCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCC--CCc-ccCC--------c---hHHHHHHHHcCcCCCCcEEEE
Q 025141          153 FSDPRLELVINDARAELESR-KESYDVIIGDLADPIE--GGP-CYKL--------Y---TKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       153 ~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~~--~~p-~~~L--------~---t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +...+++++++|++++++.. +++||+|++|+|-...  ... ...+        +   -.+++++ ++++|+|||.+++
T Consensus        17 ~~~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~-~~rvLk~~G~l~i   95 (297)
T 2zig_A           17 VSFGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWRE-VFRLLVPGGRLVI   95 (297)
T ss_dssp             ----CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEE
T ss_pred             ccccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHH-HHHHcCCCcEEEE
Confidence            34568899999999998764 4789999999973110  000 0000        1   1345677 6899999999998


Q ss_pred             ecC
Q 025141          218 QAG  220 (257)
Q Consensus       218 ~~~  220 (257)
                      +.+
T Consensus        96 ~~~   98 (297)
T 2zig_A           96 VVG   98 (297)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            865

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.42  E-value=0.041  Score=49.58  Aligned_cols=108  Identities=12%  Similarity=0.159  Sum_probs=64.9

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-hHHHHhc-C-CCce
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELES-R-KESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D-a~~~l~~-~-~~~f  176 (257)
                      ...++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. ..      + -+.....| ..+.+++ + ...+
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l-Ga------~-~i~~~~~~~~~~~v~~~t~g~g~  255 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GF------E-IADLSLDTPLHEQIAALLGEPEV  255 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TC------E-EEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc-CC------c-EEccCCcchHHHHHHHHhCCCCC
Confidence            3468999999865 66788888877656899999999999999864 11      0 01100112 3334433 2 3479


Q ss_pred             eEEEEcCCCCCCCCc----ccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGP----CYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p----~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+||-....+.. ..    ..+....+.++. +.+.|+++|.+++-
T Consensus       256 Dvvid~~G~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~  299 (398)
T 1kol_A          256 DCAVDAVGFEAR-GHGHEGAKHEAPATVLNS-LMQVTRVAGKIGIP  299 (398)
T ss_dssp             EEEEECCCTTCB-CSSTTGGGSBCTTHHHHH-HHHHEEEEEEEEEC
T ss_pred             CEEEECCCCccc-ccccccccccchHHHHHH-HHHHHhcCCEEEEe
Confidence            999865432210 00    001112234566 57789999998764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.41  E-value=0.02  Score=50.86  Aligned_cols=94  Identities=13%  Similarity=0.145  Sum_probs=58.4

Q ss_pred             CeEEEEeccc-hHHH-HHHH-hcCCCcEEEEEECCHH---HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025141          104 KTIFIMGGGE-GSTA-REIL-RHKTVEKVVMCDIDEE---VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (257)
Q Consensus       104 ~~VL~IG~G~-G~~~-~~l~-~~~~~~~v~~VEid~~---vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      ++||++|+|+ |.++ .+++ +..+..+|++++.+++   -.+.+++. ...       .+.....|..+ +++..+.+|
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l-Ga~-------~v~~~~~~~~~-i~~~~gg~D  244 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL-DAT-------YVDSRQTPVED-VPDVYEQMD  244 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT-TCE-------EEETTTSCGGG-HHHHSCCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc-CCc-------ccCCCccCHHH-HHHhCCCCC
Confidence            8999999743 5567 7888 7766555999999988   77888763 211       01000123333 322123799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+-...     .       ...++. +.+.|+++|.++.-.
T Consensus       245 vvid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          245 FIYEATG-----F-------PKHAIQ-SVQALAPNGVGALLG  273 (357)
T ss_dssp             EEEECSC-----C-------HHHHHH-HHHHEEEEEEEEECC
T ss_pred             EEEECCC-----C-------hHHHHH-HHHHHhcCCEEEEEe
Confidence            9984432     1       123555 567899999988643

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.40  E-value=0.054  Score=48.32  Aligned_cols=99  Identities=9%  Similarity=-0.038  Sum_probs=62.2

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhc-CCCce
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~--~~Da~~~l~~-~~~~f  176 (257)
                      .+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. ...      .-+...  ..|..+.+++ +.+.+
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~------~vi~~~~~~~~~~~~i~~~t~gg~  262 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL-GAT------ECLNPKDYDKPIYEVICEKTNGGV  262 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT-TCS------EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------EEEecccccchHHHHHHHHhCCCC
Confidence            3468999999764 55677777766655899999999988888864 210      000000  0234444433 33479


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCC-cEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gil~~~~  219 (257)
                      |+|+-...     .       .+.++. +.+.|+++ |.++.-.
T Consensus       263 Dvvid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          263 DYAVECAG-----R-------IETMMN-ALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             SEEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECC
T ss_pred             CEEEECCC-----C-------HHHHHH-HHHHHhcCCCEEEEEc
Confidence            99985432     1       234566 57899999 9988643

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.38  E-value=0.041  Score=48.65  Aligned_cols=90  Identities=18%  Similarity=0.115  Sum_probs=60.4

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.++||++|+|+ |.++.++++..+. +|++++.+++-.+.+++. ..        . .++ .|. +.++   +.+|+|
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l-Ga--------~-~v~-~~~-~~~~---~~~D~v  238 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSM-GV--------K-HFY-TDP-KQCK---EELDFI  238 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHT-TC--------S-EEE-SSG-GGCC---SCEEEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhc-CC--------C-eec-CCH-HHHh---cCCCEE
Confidence            4568999999875 6677888887664 899999999988888863 21        1 122 332 2222   279999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +-....+            +.++. +.+.|+++|.++.-.
T Consensus       239 id~~g~~------------~~~~~-~~~~l~~~G~iv~~G  265 (348)
T 3two_A          239 ISTIPTH------------YDLKD-YLKLLTYNGDLALVG  265 (348)
T ss_dssp             EECCCSC------------CCHHH-HHTTEEEEEEEEECC
T ss_pred             EECCCcH------------HHHHH-HHHHHhcCCEEEEEC
Confidence            8543321            01345 577999999988643

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.34  E-value=0.013  Score=51.91  Aligned_cols=67  Identities=18%  Similarity=0.141  Sum_probs=46.6

Q ss_pred             CCCeEEE-EcchHHHHhcCC-CceeEEEEcCCCCCCCC----ccc-CCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          155 DPRLELV-INDARAELESRK-ESYDVIIGDLADPIEGG----PCY-KLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       155 ~~rv~i~-~~Da~~~l~~~~-~~fDvIi~D~~~~~~~~----p~~-~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      +...+++ ++|++++++... +++|+|++|||-.....    ... .-+..+.+.. ++++|+|+|.++++.+..
T Consensus        36 ~~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~-~~rvLk~~G~i~i~~~~~  109 (319)
T 1eg2_A           36 GTTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAE-AERVLSPTGSIAIFGGLQ  109 (319)
T ss_dssp             CCEEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHH-HHHHEEEEEEEEEEECSC
T ss_pred             cccceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHH-HHHHcCCCeEEEEEcCcc
Confidence            3457888 999999998644 68999999997322100    000 0124567777 689999999999987543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.28  E-value=0.099  Score=46.58  Aligned_cols=98  Identities=12%  Similarity=0.086  Sum_probs=61.9

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhc-CCCcee
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES-RKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~--~~Da~~~l~~-~~~~fD  177 (257)
                      +.++||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. ...      .-+...  ..|..+.++. ..+.+|
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~------~vi~~~~~~~~~~~~~~~~~~~g~D  264 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF-GAT------DFVNPNDHSEPISQVLSKMTNGGVD  264 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCC------EEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CCc------eEEeccccchhHHHHHHHHhCCCCC
Confidence            458999999764 56677777776655899999999999988864 110      000000  0233344432 234799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCC-cEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gil~~~~  219 (257)
                      +|+-...     .       .+.++. +.+.|+++ |.++.-.
T Consensus       265 ~vid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          265 FSLECVG-----N-------VGVMRN-ALESCLKGWGVSVLVG  294 (374)
T ss_dssp             EEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECS
T ss_pred             EEEECCC-----C-------HHHHHH-HHHHhhcCCcEEEEEc
Confidence            9985432     1       234566 57899999 9988643

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.25  E-value=0.11  Score=46.26  Aligned_cols=94  Identities=12%  Similarity=0.091  Sum_probs=61.2

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhc--CCC
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES--RKE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~---~Da~~~l~~--~~~  174 (257)
                      ...++||++|+|+ |..+.++++..+ .+|++++.+++-.+.+++. ..      +   .++.   .|..+.++.  ...
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l-Ga------~---~vi~~~~~~~~~~v~~~~~g~  256 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATG-AEVIVTSSSREKLDRAFAL-GA------D---HGINRLEEDWVERVYALTGDR  256 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH-TC------S---EEEETTTSCHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCchhHHHHHHc-CC------C---EEEcCCcccHHHHHHHHhCCC
Confidence            3468999999765 666777788766 4899999999998888874 11      1   1111   234444433  234


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .+|+|+-... +    .        .++. +.+.|+++|.++.-.
T Consensus       257 g~D~vid~~g-~----~--------~~~~-~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          257 GADHILEIAG-G----A--------GLGQ-SLKAVAPDGRISVIG  287 (363)
T ss_dssp             CEEEEEEETT-S----S--------CHHH-HHHHEEEEEEEEEEC
T ss_pred             CceEEEECCC-h----H--------HHHH-HHHHhhcCCEEEEEe
Confidence            7999986543 1    1        1344 456899999888643

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.19  E-value=0.047  Score=48.76  Aligned_cols=97  Identities=12%  Similarity=0.013  Sum_probs=61.5

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhc-CCCcee
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES-RKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~--~~Da~~~l~~-~~~~fD  177 (257)
                      +.++||++|+|. |.++.++++..+..+|++++.+++-.+.+++. ...      .-+...  ..|..+.+++ ..+.+|
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~------~vi~~~~~~~~~~~~v~~~~~~g~D  267 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-GAT------DCLNPRELDKPVQDVITELTAGGVD  267 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCS------EEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCc------EEEccccccchHHHHHHHHhCCCcc
Confidence            458999999764 55677778776655899999999988888764 111      000000  0234444432 234799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCC-cEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gil~~~  218 (257)
                      +|+-...     .       .+.++. +.+.|+++ |.++.-
T Consensus       268 vvid~~G-----~-------~~~~~~-~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          268 YSLDCAG-----T-------AQTLKA-AVDCTVLGWGSCTVV  296 (376)
T ss_dssp             EEEESSC-----C-------HHHHHH-HHHTBCTTTCEEEEC
T ss_pred             EEEECCC-----C-------HHHHHH-HHHHhhcCCCEEEEE
Confidence            9985432     1       234566 57799999 998854

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.09  E-value=0.14  Score=45.68  Aligned_cols=98  Identities=11%  Similarity=0.058  Sum_probs=61.7

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhc-CCCce
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~--~~Da~~~l~~-~~~~f  176 (257)
                      .+.++||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. ...      .-+...  ..|..+.++. ..+.+
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~------~vi~~~~~~~~~~~~~~~~~~~g~  262 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV-GAT------ECVNPQDYKKPIQEVLTEMSNGGV  262 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCS------EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCc------eEecccccchhHHHHHHHHhCCCC
Confidence            3458999999765 56677777776655899999999988888764 110      000000  0234444433 23479


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCC-cEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gil~~~  218 (257)
                      |+|+-...     .       .+.++. +.+.|+++ |.++.-
T Consensus       263 D~vid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          263 DFSFEVIG-----R-------LDTMVT-ALSCCQEAYGVSVIV  292 (374)
T ss_dssp             SEEEECSC-----C-------HHHHHH-HHHHBCTTTCEEEEC
T ss_pred             cEEEECCC-----C-------HHHHHH-HHHHhhcCCcEEEEe
Confidence            99985432     1       234555 56789999 998864

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.09  E-value=0.12  Score=46.03  Aligned_cols=98  Identities=10%  Similarity=0.073  Sum_probs=61.6

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhc-CCCcee
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES-RKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~--~~Da~~~l~~-~~~~fD  177 (257)
                      ..++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. ...      .-+...  ..|..+.+++ ..+.+|
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~------~vi~~~~~~~~~~~~v~~~~~~g~D  262 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF-GAT------ECINPQDFSKPIQEVLIEMTDGGVD  262 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH-TCS------EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc------eEeccccccccHHHHHHHHhCCCCC
Confidence            458999999765 55677777765655899999999998988864 211      000000  0234444433 234799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCC-cEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gil~~~~  219 (257)
                      +|+-...     .       .+.++. +.+.|+++ |.++.-.
T Consensus       263 ~vid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          263 YSFECIG-----N-------VKVMRA-ALEACHKGWGVSVVVG  292 (373)
T ss_dssp             EEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECS
T ss_pred             EEEECCC-----c-------HHHHHH-HHHhhccCCcEEEEEe
Confidence            9985432     1       234566 57799999 9988643

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.06  E-value=0.067  Score=47.49  Aligned_cols=94  Identities=16%  Similarity=0.126  Sum_probs=57.6

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH-HHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-AELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~-~~l~~~~~~fDv  178 (257)
                      .+.++||++|+|+ |..+.++++..+. +|++++.+++-.+.+++. ..      +   .++..+-. ++.+...+.+|+
T Consensus       178 ~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l-Ga------~---~v~~~~~~~~~~~~~~~~~D~  246 (360)
T 1piw_A          178 GPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM-GA------D---HYIATLEEGDWGEKYFDTFDL  246 (360)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH-TC------S---EEEEGGGTSCHHHHSCSCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc-CC------C---EEEcCcCchHHHHHhhcCCCE
Confidence            3468999999754 6667777776554 799999999888888863 21      1   11111101 222222257999


Q ss_pred             EEEcCCC--CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLAD--PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~--~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+-....  +.       .     ++. +.+.|+++|.++.-
T Consensus       247 vid~~g~~~~~-------~-----~~~-~~~~l~~~G~iv~~  275 (360)
T 1piw_A          247 IVVCASSLTDI-------D-----FNI-MPKAMKVGGRIVSI  275 (360)
T ss_dssp             EEECCSCSTTC-------C-----TTT-GGGGEEEEEEEEEC
T ss_pred             EEECCCCCcHH-------H-----HHH-HHHHhcCCCEEEEe
Confidence            9865432  11       1     123 46788999988753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.06  E-value=0.11  Score=39.56  Aligned_cols=94  Identities=15%  Similarity=0.190  Sum_probs=58.8

Q ss_pred             CCeEEEEeccc-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcC-CCcee
Q 025141          103 PKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYD  177 (257)
Q Consensus       103 ~~~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~-~~~fD  177 (257)
                      ..+|+++|+|. |. +++.+.+ .+ .+|+++|.|++.++.+++.           .+.++.+|+.+  .++.. -++.|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~-~g-~~v~vid~~~~~~~~~~~~-----------g~~~i~gd~~~~~~l~~a~i~~ad   73 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLA-SD-IPLVVIETSRTRVDELRER-----------GVRAVLGNAANEEIMQLAHLECAK   73 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH-TT-CCEEEEESCHHHHHHHHHT-----------TCEEEESCTTSHHHHHHTTGGGCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CC-CCEEEEECCHHHHHHHHHc-----------CCCEEECCCCCHHHHHhcCcccCC
Confidence            36899999985 33 3344444 34 4899999999998877651           35677788743  34433 36799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|++..++..        .+.....  ..+.+.|+..++...
T Consensus        74 ~vi~~~~~~~--------~n~~~~~--~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           74 WLILTIPNGY--------EAGEIVA--SARAKNPDIEIIARA  105 (140)
T ss_dssp             EEEECCSCHH--------HHHHHHH--HHHHHCSSSEEEEEE
T ss_pred             EEEEECCChH--------HHHHHHH--HHHHHCCCCeEEEEE
Confidence            9998765321        1111222  245577887777654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.97  E-value=0.032  Score=44.95  Aligned_cols=96  Identities=18%  Similarity=0.144  Sum_probs=58.2

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~f  176 (257)
                      .+.++||++|+  |.|..+.++++..+ .+|++++.+++-.+.+++. ..      +..+.....|..+.+.+ . ...+
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~-g~------~~~~d~~~~~~~~~~~~~~~~~~~  108 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRL-GV------EYVGDSRSVDFADEILELTDGYGV  108 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTT-CC------SEEEETTCSTHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------CEEeeCCcHHHHHHHHHHhCCCCC
Confidence            34688999994  44556666666545 5899999999888777653 10      10111111233333332 2 2469


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|+....      +       +.++. +.+.|+|+|.++.-
T Consensus       109 D~vi~~~g------~-------~~~~~-~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          109 DVVLNSLA------G-------EAIQR-GVQILAPGGRFIEL  136 (198)
T ss_dssp             EEEEECCC------T-------HHHHH-HHHTEEEEEEEEEC
T ss_pred             eEEEECCc------h-------HHHHH-HHHHhccCCEEEEE
Confidence            99986531      1       23556 57789999998864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.91  E-value=0.058  Score=47.30  Aligned_cols=97  Identities=24%  Similarity=0.244  Sum_probs=62.2

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fD  177 (257)
                      .+.++||++|+  |.|..+.++++..+. +|++++.+++-.+.+.+.+...      .-+.....|..+.+.+ ..+.+|
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGFD------GAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCS------EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCC------EEEECCCHHHHHHHHHhcCCCce
Confidence            45689999997  456677777777664 9999999999888883333211      0011111344444433 345799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+....             .+.++. +.+.|+++|.++.-
T Consensus       221 ~vi~~~g-------------~~~~~~-~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          221 VFFDNVG-------------GEILDT-VLTRIAFKARIVLC  247 (336)
T ss_dssp             EEEESSC-------------HHHHHH-HHTTEEEEEEEEEC
T ss_pred             EEEECCC-------------cchHHH-HHHHHhhCCEEEEE
Confidence            9886432             124566 57899999998863

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=94.90  E-value=0.15  Score=44.71  Aligned_cols=99  Identities=15%  Similarity=0.099  Sum_probs=62.6

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD  177 (257)
                      .+.++||+.|+|+.+ ++.++++..+...+++++.+++-.+.++++=.       +.-+.....|..+.++.  ....+|
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa-------~~~i~~~~~~~~~~~~~~~~~~g~d  231 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA-------MQTFNSSEMSAPQMQSVLRELRFNQ  231 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC-------eEEEeCCCCCHHHHHHhhcccCCcc
Confidence            456899999986544 56677777776788999999999999987521       11111112344444433  235578


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+-...     .       .+.++. +.+.|+++|.+++-.
T Consensus       232 ~v~d~~G-----~-------~~~~~~-~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          232 LILETAG-----V-------PQTVEL-AVEIAGPHAQLALVG  260 (346)
T ss_dssp             EEEECSC-----S-------HHHHHH-HHHHCCTTCEEEECC
T ss_pred             ccccccc-----c-------cchhhh-hhheecCCeEEEEEe
Confidence            7764432     1       234555 567899999988654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.88  E-value=0.16  Score=45.39  Aligned_cols=96  Identities=21%  Similarity=0.355  Sum_probs=57.1

Q ss_pred             CCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc---chHHHHhcCCCcee
Q 025141          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN---DARAELESRKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~---Da~~~l~~~~~~fD  177 (257)
                      ++++||++|+|.=+ .+..+++..+. +|+++|.+++-.+.+++.+..        ++..+..   |..+.+    ..+|
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~~~D  232 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS--------RVELLYSNSAEIETAV----AEAD  232 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG--------GSEEEECCHHHHHHHH----HTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc--------eeEeeeCCHHHHHHHH----cCCC
Confidence            45899999985333 33444444554 899999999988887765431        1222222   222333    2689


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +||.....+..  +...+.+.+     ..+.|+|+|+++-
T Consensus       233 vVI~~~~~~~~--~~~~li~~~-----~~~~~~~g~~ivd  265 (361)
T 1pjc_A          233 LLIGAVLVPGR--RAPILVPAS-----LVEQMRTGSVIVD  265 (361)
T ss_dssp             EEEECCCCTTS--SCCCCBCHH-----HHTTSCTTCEEEE
T ss_pred             EEEECCCcCCC--CCCeecCHH-----HHhhCCCCCEEEE
Confidence            99876654331  112344443     2456889998774

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.87  E-value=0.031  Score=49.42  Aligned_cols=97  Identities=15%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCceeE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~fDv  178 (257)
                      +.++||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. ...      .-+.....|..+.+++ + ...+|+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~-Ga~------~~~~~~~~~~~~~v~~~~~g~g~D~  239 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV-GAD------YVINPFEEDVVKEVMDITDGNGVDV  239 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH-TCS------EEECTTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEECCCCcCHHHHHHHHcCCCCCCE
Confidence            568999999854 56677777766644899999999988888864 211      0000001344444443 2 246999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+....     .       .+.++. +.+.|+++|.++.-
T Consensus       240 vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          240 FLEFSG-----A-------PKALEQ-GLQAVTPAGRVSLL  266 (348)
T ss_dssp             EEECSC-----C-------HHHHHH-HHHHEEEEEEEEEC
T ss_pred             EEECCC-----C-------HHHHHH-HHHHHhcCCEEEEE
Confidence            985532     1       234555 56788999988764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.84  E-value=0.084  Score=47.05  Aligned_cols=96  Identities=24%  Similarity=0.298  Sum_probs=61.3

Q ss_pred             CCCeEEEEe--ccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeE
Q 025141          102 NPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDv  178 (257)
                      +.++||++|  +|.|.++.++++.....+|++++.+++-.+.+++. +... .+ +.     ..|..+.+++. .+.+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l-Gad~-vi-~~-----~~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL-GAHH-VI-DH-----SKPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT-TCSE-EE-CT-----TSCHHHHHHTTCSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc-CCCE-EE-eC-----CCCHHHHHHHhcCCCceE
Confidence            456899998  34567788888852236999999999988888873 2110 00 01     12344444443 357998


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+-...            ..+.++. +.+.|+++|.++.-
T Consensus       243 vid~~g------------~~~~~~~-~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          243 VFSTTH------------TDKHAAE-IADLIAPQGRFCLI  269 (363)
T ss_dssp             EEECSC------------HHHHHHH-HHHHSCTTCEEEEC
T ss_pred             EEECCC------------chhhHHH-HHHHhcCCCEEEEE
Confidence            875322            1234566 57789999998864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.78  E-value=0.39  Score=41.99  Aligned_cols=92  Identities=16%  Similarity=0.127  Sum_probs=58.5

Q ss_pred             CCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhcCCCceeE
Q 025141          102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~-~l~~~~~~fDv  178 (257)
                      ..++|.+||+|.  +.+++.+.+.....+|+++|.+++.++.+++. ..         +.-...|..+ .+    ...|+
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~-G~---------~~~~~~~~~~~~~----~~aDv   97 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GI---------IDEGTTSIAKVED----FSPDF   97 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TS---------CSEEESCTTGGGG----GCCSE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC-CC---------cchhcCCHHHHhh----ccCCE
Confidence            347899999984  34555665542223899999999988877653 11         0112234333 23    35799


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ||+..+..         ...+.++. +...|+|+.+++-
T Consensus        98 Vilavp~~---------~~~~vl~~-l~~~l~~~~iv~d  126 (314)
T 3ggo_A           98 VMLSSPVR---------TFREIAKK-LSYILSEDATVTD  126 (314)
T ss_dssp             EEECSCGG---------GHHHHHHH-HHHHSCTTCEEEE
T ss_pred             EEEeCCHH---------HHHHHHHH-HhhccCCCcEEEE
Confidence            99876521         14567788 6888999887654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.77  E-value=0.075  Score=48.03  Aligned_cols=103  Identities=17%  Similarity=0.194  Sum_probs=61.1

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CC-CceeE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~-~~fDv  178 (257)
                      +.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++.-. .      .-+.....|..+.+++ +. ..+|+
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa-~------~vi~~~~~~~~~~i~~~t~g~g~D~  285 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA-D------HVIDPTKENFVEAVLDYTNGLGAKL  285 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC-S------EEECTTTSCHHHHHHHHTTTCCCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-C------EEEcCCCCCHHHHHHHHhCCCCCCE
Confidence            467999999864 5567777877776699999999999999987521 0      0000011344444443 23 46999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+-....     +.  .......+. +.+.++++|.++.-.
T Consensus       286 vid~~g~-----~~--~~~~~~~~~-l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          286 FLEATGV-----PQ--LVWPQIEEV-IWRARGINATVAIVA  318 (404)
T ss_dssp             EEECSSC-----HH--HHHHHHHHH-HHHCSCCCCEEEECS
T ss_pred             EEECCCC-----cH--HHHHHHHHH-HHhccCCCcEEEEeC
Confidence            9854321     10  011122222 234459999988643

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.77  E-value=0.11  Score=45.95  Aligned_cols=94  Identities=17%  Similarity=0.137  Sum_probs=57.8

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +.++||++|+|+ |..+.++++..+ .+|++++.+++-.+.+++.+...       .+ +-..| .+.+++..+.+|+|+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~G-a~Vi~~~~~~~~~~~~~~~lGa~-------~v-i~~~~-~~~~~~~~~g~D~vi  249 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMG-HHVTVISSSNKKREEALQDLGAD-------DY-VIGSD-QAKMSELADSLDYVI  249 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSTTHHHHHHTTSCCS-------CE-EETTC-HHHHHHSTTTEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHcCCc-------ee-ecccc-HHHHHHhcCCCCEEE
Confidence            568999999753 445666777655 48999999998888877444311       11 11122 233443335799998


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      -....+.       .     ++. ..+.|+++|.++.-
T Consensus       250 d~~g~~~-------~-----~~~-~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          250 DTVPVHH-------A-----LEP-YLSLLKLDGKLILM  274 (357)
T ss_dssp             ECCCSCC-------C-----SHH-HHTTEEEEEEEEEC
T ss_pred             ECCCChH-------H-----HHH-HHHHhccCCEEEEe
Confidence            5443211       1     234 46789999998864

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=94.71  E-value=0.04  Score=49.43  Aligned_cols=96  Identities=18%  Similarity=0.184  Sum_probs=60.5

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE------cchHHHHhc-C
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI------NDARAELES-R  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~------~Da~~~l~~-~  172 (257)
                      .+.++||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. ..      +   .++.      .|..+.+++ .
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l-Ga------~---~vi~~~~~~~~~~~~~v~~~~  263 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GA------D---LTLNRRETSVEERRKAIMDIT  263 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TC------S---EEEETTTSCHHHHHHHHHHHT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc-CC------c---EEEeccccCcchHHHHHHHHh
Confidence            3458999999543 55677777776645999999999998988863 11      1   1121      233333433 2


Q ss_pred             C-CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          173 K-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       173 ~-~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      . ..+|+||-....     +       +.++. +.+.|+++|.++.-.
T Consensus       264 ~g~g~Dvvid~~g~-----~-------~~~~~-~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          264 HGRGADFILEATGD-----S-------RALLE-GSELLRRGGFYSVAG  298 (380)
T ss_dssp             TTSCEEEEEECSSC-----T-------THHHH-HHHHEEEEEEEEECC
T ss_pred             CCCCCcEEEECCCC-----H-------HHHHH-HHHHHhcCCEEEEEe
Confidence            2 369999854321     1       12444 466889999888643

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.60  E-value=0.043  Score=48.37  Aligned_cols=97  Identities=18%  Similarity=0.179  Sum_probs=60.2

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.++||++|+|+ |..+.++++..+ .+|++++.+++-.+.+++. ...      .-+.....|..+.+++....+|+|
T Consensus       163 ~~g~~VlV~GaG~vG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~l-Ga~------~~~d~~~~~~~~~~~~~~~~~d~v  234 (339)
T 1rjw_A          163 KPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKEL-GAD------LVVNPLKEDAAKFMKEKVGGVHAA  234 (339)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT-TCS------EEECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHC-CCC------EEecCCCccHHHHHHHHhCCCCEE
Confidence            4568999999853 666777777666 4999999999999988763 211      000000123333333211579999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +....     .       .+.++. +.+.|+++|.++.-
T Consensus       235 id~~g-----~-------~~~~~~-~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          235 VVTAV-----S-------KPAFQS-AYNSIRRGGACVLV  260 (339)
T ss_dssp             EESSC-----C-------HHHHHH-HHHHEEEEEEEEEC
T ss_pred             EECCC-----C-------HHHHHH-HHHHhhcCCEEEEe
Confidence            86532     1       123455 56788999988754

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=94.55  E-value=0.057  Score=47.20  Aligned_cols=74  Identities=11%  Similarity=0.173  Sum_probs=55.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcE--EEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEK--VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KES  175 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~--v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~  175 (257)
                      ..+.+++++-+|.|++...+.+. +...  |.++|+|+...+..+.+++         ...++.+|..++....   ...
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~---------~~~~~~~DI~~i~~~~i~~~~~   83 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ---------GKIMYVGDVRSVTQKHIQEWGP   83 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT---------TCEEEECCGGGCCHHHHHHTCC
T ss_pred             CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC---------CCceeCCChHHccHHHhcccCC
Confidence            34568999999999999887774 4444  6899999999998887753         3357778887654321   146


Q ss_pred             eeEEEEcCC
Q 025141          176 YDVIIGDLA  184 (257)
Q Consensus       176 fDvIi~D~~  184 (257)
                      +|+|+..++
T Consensus        84 ~Dll~ggpP   92 (295)
T 2qrv_A           84 FDLVIGGSP   92 (295)
T ss_dssp             CSEEEECCC
T ss_pred             cCEEEecCC
Confidence            999999986

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.46  E-value=0.17  Score=45.10  Aligned_cols=94  Identities=19%  Similarity=0.141  Sum_probs=56.7

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +.++||++|+|+ |..+.++++..+ .+|++++.+++-.+.+++.+...        ..+-..| .+.+++..+.+|+|+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~lGa~--------~v~~~~~-~~~~~~~~~~~D~vi  256 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFG-SKVTVISTSPSKKEEALKNFGAD--------SFLVSRD-QEQMQAAAGTLDGII  256 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGGGHHHHHHTSCCS--------EEEETTC-HHHHHHTTTCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhcCCc--------eEEeccC-HHHHHHhhCCCCEEE
Confidence            568999999754 445667777666 48999999998887777443311        1111112 233443335799998


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      -....+.       .     ++. +.+.|+++|.++.-
T Consensus       257 d~~g~~~-------~-----~~~-~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          257 DTVSAVH-------P-----LLP-LFGLLKSHGKLILV  281 (366)
T ss_dssp             ECCSSCC-------C-----SHH-HHHHEEEEEEEEEC
T ss_pred             ECCCcHH-------H-----HHH-HHHHHhcCCEEEEE
Confidence            6543211       1     123 34567899988753

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.27  E-value=0.12  Score=47.12  Aligned_cols=106  Identities=20%  Similarity=0.207  Sum_probs=58.2

Q ss_pred             CCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCC-----CC-CCeEEEE---cch-----H
Q 025141          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF-----SD-PRLELVI---NDA-----R  166 (257)
Q Consensus       102 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~-----~~-~rv~i~~---~Da-----~  166 (257)
                      .+.+|++||+|.=+ .+..+++..+ .+|+++|.++...+.+++. .......     .+ .....+.   .+.     .
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lG-a~V~v~D~~~~~l~~~~~~-G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLG-AVVSATDVRPAAKEQVASL-GAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSTTHHHHHHHT-TCEECCCCC-----------------CHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHc-CCceeecccccccccccccchhhhcchhhhhhhH
Confidence            46899999998544 3444455455 4899999999988888773 2110000     00 0000000   000     0


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       167 ~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      .-+.+.-...|+||.-...|..  +...|.+++.     -+.+|||.+++
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~--~ap~Lvt~em-----v~~Mk~GsVIV  309 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGR--PAPRLVTREM-----LDSMKPGSVVV  309 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSS--CCCCCBCHHH-----HTTSCTTCEEE
T ss_pred             hHHHHHhcCCCEEEECCcCCCC--CCCEEecHHH-----HhcCCCCCEEE
Confidence            1111112468999987654432  2236777754     34578888776

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.26  E-value=0.41  Score=44.18  Aligned_cols=140  Identities=16%  Similarity=0.197  Sum_probs=79.9

Q ss_pred             CCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCC--------CCCCeEEEEcchHHHHh
Q 025141          102 NPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAF--------SDPRLELVINDARAELE  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~--------~~~rv~i~~~Da~~~l~  170 (257)
                      ..-++-+||+|.=++  +..+++. + -+|+++|+|++.++..++... .....+        ...++++ ..|..+-+ 
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~-G-~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~-   82 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDF-G-HEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV-   82 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH-
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH-
Confidence            456899999986443  4445553 3 489999999999888776311 000000        0123433 34554444 


Q ss_pred             cCCCceeEEEEcCCCCCC--CCcccCC-chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025141          171 SRKESYDVIIGDLADPIE--GGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC  247 (257)
Q Consensus       171 ~~~~~fDvIi~D~~~~~~--~~p~~~L-~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  247 (257)
                         ..-|+||+-.+.|..  .+. ..| +-++..+. +.+.|+++-+++..+..+     +...+++.+.+.+..+....
T Consensus        83 ---~~aDvvii~Vptp~~~~~~~-~Dl~~v~~v~~~-i~~~l~~g~iVV~~STv~-----pgtt~~l~~~l~e~~~~~d~  152 (446)
T 4a7p_A           83 ---KDADAVFIAVGTPSRRGDGH-ADLSYVFAAARE-IAENLTKPSVIVTKSTVP-----VGTGDEVERIIAEVAPNSGA  152 (446)
T ss_dssp             ---TTCSEEEECCCCCBCTTTCC-BCTHHHHHHHHH-HHHSCCSCCEEEECSCCC-----TTHHHHHHHHHHHHSTTSCC
T ss_pred             ---hcCCEEEEEcCCCCccccCC-ccHHHHHHHHHH-HHHhcCCCCEEEEeCCCC-----chHHHHHHHHHHHhCCCCCc
Confidence               346999998765531  111 122 23566677 678899988777654322     23344555666666554444


Q ss_pred             EeecCccc
Q 025141          248 ALFSSYSF  255 (257)
Q Consensus       248 ~~~~~~~~  255 (257)
                      ...++|.|
T Consensus       153 ~v~~~Pe~  160 (446)
T 4a7p_A          153 KVVSNPEF  160 (446)
T ss_dssp             EEEECCCC
T ss_pred             eEEeCccc
Confidence            44555554

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.26  E-value=0.053  Score=47.84  Aligned_cols=93  Identities=12%  Similarity=0.078  Sum_probs=59.0

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-HHHHhc--CCCc
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELES--RKES  175 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da-~~~l~~--~~~~  175 (257)
                      +.++||++|+|+ |.++.++++..  + .+|++++.+++-.+.+++. ..      +   .++..+- .++++.  ....
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~G-a~Vi~~~~~~~~~~~~~~l-Ga------~---~vi~~~~~~~~~~~~~~g~g  238 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKN-ITIVGISRSKKHRDFALEL-GA------D---YVSEMKDAESLINKLTDGLG  238 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHH-TC------S---EEECHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHHHHHh-CC------C---EEeccccchHHHHHhhcCCC
Confidence            568999999864 55677777765  6 4799999999988888863 21      1   1121111 122222  1347


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+|+-...     .       .+.++. +.+.|+++|.++.-
T Consensus       239 ~D~vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          239 ASIAIDLVG-----T-------EETTYN-LGKLLAQEGAIILV  268 (344)
T ss_dssp             EEEEEESSC-----C-------HHHHHH-HHHHEEEEEEEEEC
T ss_pred             ccEEEECCC-----C-------hHHHHH-HHHHhhcCCEEEEe
Confidence            999985432     1       124555 56789999998764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.15  E-value=0.029  Score=49.48  Aligned_cols=96  Identities=17%  Similarity=0.220  Sum_probs=59.8

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvI  179 (257)
                      +.++||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. ...  .. +.+    ..|..+.+++ +...+|+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~--v~-~~~----~~~~~~~~~~~~~~g~D~v  235 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADR--LV-NPL----EEDLLEVVRRVTGSGVEVL  235 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSE--EE-CTT----TSCHHHHHHHHHSSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHh--cc-CcC----ccCHHHHHHHhcCCCCCEE
Confidence            568999999854 56677777766644899999999887777764 210  00 000    1233333332 24579999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +-...     .       .+.++. +.+.|+++|.++.-
T Consensus       236 id~~g-----~-------~~~~~~-~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          236 LEFSG-----N-------EAAIHQ-GLMALIPGGEARIL  261 (343)
T ss_dssp             EECSC-----C-------HHHHHH-HHHHEEEEEEEEEC
T ss_pred             EECCC-----C-------HHHHHH-HHHHHhcCCEEEEE
Confidence            85432     1       133455 56788999988754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=94.04  E-value=0.062  Score=46.72  Aligned_cols=87  Identities=14%  Similarity=0.243  Sum_probs=55.8

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.++||++|+|+ |.++.++++..+. +|++++ +++-.+.+++. ...         .++ .| .+-+   .+.+|+|
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l-Ga~---------~v~-~d-~~~v---~~g~Dvv  203 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR-GVR---------HLY-RE-PSQV---TQKYFAI  203 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH-TEE---------EEE-SS-GGGC---CSCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc-CCC---------EEE-cC-HHHh---CCCccEE
Confidence            3568999999853 6677788887664 999999 88888888773 211         122 24 2222   5789998


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +-....     +       . ... +.+.|+++|.++.-
T Consensus       204 ~d~~g~-----~-------~-~~~-~~~~l~~~G~~v~~  228 (315)
T 3goh_A          204 FDAVNS-----Q-------N-AAA-LVPSLKANGHIICI  228 (315)
T ss_dssp             ECC--------------------T-TGGGEEEEEEEEEE
T ss_pred             EECCCc-----h-------h-HHH-HHHHhcCCCEEEEE
Confidence            743221     1       0 123 46789999988865

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.04  E-value=0.16  Score=44.37  Aligned_cols=96  Identities=19%  Similarity=0.274  Sum_probs=60.1

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-CCCce
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~-~~~~f  176 (257)
                      .+.++||+.|+  |.|..+.++++..+ .+|++++.+++-.+.+++. ..      +..+.... .|..+.+.. ..+.+
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~-g~------~~~~d~~~~~~~~~~~~~~~~~~~  215 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQI-GF------DAAFNYKTVNSLEEALKKASPDGY  215 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TC------SEEEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CC------cEEEecCCHHHHHHHHHHHhCCCC
Confidence            34689999997  55666666666655 4899999999888888543 21      00011111 334444433 23579


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+++.....             +.++. +.+.|+++|.++.-
T Consensus       216 d~vi~~~g~-------------~~~~~-~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          216 DCYFDNVGG-------------EFLNT-VLSQMKDFGKIAIC  243 (333)
T ss_dssp             EEEEESSCH-------------HHHHH-HHTTEEEEEEEEEC
T ss_pred             eEEEECCCh-------------HHHHH-HHHHHhcCCEEEEE
Confidence            999865421             22456 57889999998764

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.81  E-value=0.14  Score=45.08  Aligned_cols=97  Identities=16%  Similarity=0.085  Sum_probs=60.9

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhc-CCCce
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~-~~Da~~~l~~-~~~~f  176 (257)
                      .+.++||++|+  |.|..+.++++..+ .+|++++.+++-.+.+++. ..      +.-+.+. ..|..+.++. ..+.+
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~V~~~~~~~~~~~~~~~~-g~------~~~~d~~~~~~~~~~~~~~~~~~~  239 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAMG-YRVLGIDGGEGKEELFRSI-GG------EVFIDFTKEKDIVGAVLKATDGGA  239 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSTTHHHHHHHT-TC------CEEEETTTCSCHHHHHHHHHTSCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCC-CcEEEEcCCHHHHHHHHHc-CC------ceEEecCccHhHHHHHHHHhCCCC
Confidence            34589999998  45666667777655 4899999998888887763 11      1001100 1233444432 12379


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|+.....            .+.++. +.+.|+++|.++.-
T Consensus       240 D~vi~~~g~------------~~~~~~-~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          240 HGVINVSVS------------EAAIEA-STRYVRANGTTVLV  268 (347)
T ss_dssp             EEEEECSSC------------HHHHHH-HTTSEEEEEEEEEC
T ss_pred             CEEEECCCc------------HHHHHH-HHHHHhcCCEEEEE
Confidence            999865421            234566 68899999988754

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.81  E-value=0.16  Score=44.68  Aligned_cols=95  Identities=21%  Similarity=0.368  Sum_probs=60.8

Q ss_pred             CCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025141          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDv  178 (257)
                      +.++||++|+  |.|..+.++++..+. +|++++.+++-.+.+++. .... .. +.+     .|..+.++. ..+.+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l-Ga~~-vi-~~~-----~~~~~~~~~~~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM-GADI-VL-NHK-----ESLLNQFKTQGIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH-TCSE-EE-CTT-----SCHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc-CCcE-EE-ECC-----ccHHHHHHHhCCCCccE
Confidence            5689999963  446677778887664 999999999998988873 2110 00 011     233333433 3457999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+-...            ....++. +.+.|+++|.++.-
T Consensus       221 v~d~~g------------~~~~~~~-~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          221 VFCTFN------------TDMYYDD-MIQLVKPRGHIATI  247 (346)
T ss_dssp             EEESSC------------HHHHHHH-HHHHEEEEEEEEES
T ss_pred             EEECCC------------chHHHHH-HHHHhccCCEEEEE
Confidence            885422            1244566 56789999999754

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=93.80  E-value=0.93  Score=45.99  Aligned_cols=140  Identities=9%  Similarity=0.063  Sum_probs=87.0

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----------
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----------  171 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~----------  171 (257)
                      +-++++|-||.|++..-+.+. +. ..+.++|+|+...+.-+.+++         ...++.+|..++++.          
T Consensus       540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~p---------~~~~~~~DI~~l~~~~~~~di~~~~  609 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNNP---------GSTVFTEDCNILLKLVMAGETTNSR  609 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHCT---------TSEEECSCHHHHHHHHHHTCSBCTT
T ss_pred             CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhCC---------CCccccccHHHHhhhccchhhhhhh
Confidence            358999999999998877664 44 468899999999999888764         446778887665310          


Q ss_pred             -----CCCceeEEEEcCCC-CCC-CCc---------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025141          172 -----RKESYDVIIGDLAD-PIE-GGP---------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (257)
Q Consensus       172 -----~~~~fDvIi~D~~~-~~~-~~p---------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~  235 (257)
                           .....|+|+.-++- +.+ .+.         ...| -.+|++.  .+.++|.-+++=|+.....+.....+..++
T Consensus       610 ~~~lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L-~~~~~ri--v~~~rPk~~llENV~glls~~~~~~~~~i~  686 (1002)
T 3swr_A          610 GQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSL-VVSFLSY--CDYYRPRFFLLENVRNFVSFKRSMVLKLTL  686 (1002)
T ss_dssp             CCBCCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSH-HHHHHHH--HHHHCCSEEEEEEEGGGGTTGGGHHHHHHH
T ss_pred             hhhcccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHH-HHHHHHH--HHHhCCCEEEEeccHHHhccCcchHHHHHH
Confidence                 12468999988863 221 110         0111 2456664  356899887776652211122345677788


Q ss_pred             HHHhhhCCceEEEeecCccc
Q 025141          236 NTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       236 ~~l~~~F~~v~~~~~~~~~~  255 (257)
                      +.|.+.-=.+.........|
T Consensus       687 ~~L~~lGY~v~~~vLnA~dy  706 (1002)
T 3swr_A          687 RCLVRMGYQCTFGVLQAGQY  706 (1002)
T ss_dssp             HHHHHHTCEEEEEEEEGGGG
T ss_pred             HHHHhcCCeEEEEEEEHHHC
Confidence            87876533344333333333

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=93.77  E-value=0.079  Score=46.30  Aligned_cols=97  Identities=14%  Similarity=0.159  Sum_probs=61.7

Q ss_pred             CCCCeEEEEe--ccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025141          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (257)
Q Consensus       101 ~~~~~VL~IG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~f  176 (257)
                      .+.++||++|  +|.|..+.++++..+ .+|++++.+++-.+.+++.- .      +.-+.....|..+.+.+ . ...+
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~G-a------~~~~~~~~~~~~~~~~~~~~~~g~  210 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALG-AKLIGTVSSPEKAAHAKALG-A------WETIDYSHEDVAKRVLELTDGKKC  210 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHT-C------SEEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcC-C------CEEEeCCCccHHHHHHHHhCCCCc
Confidence            3468999999  355667777777666 48999999999988888641 1      10111111344444433 2 3579


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+|+.....             +.++. +.+.|+++|.++.-.
T Consensus       211 Dvvid~~g~-------------~~~~~-~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          211 PVVYDGVGQ-------------DTWLT-SLDSVAPRGLVVSFG  239 (325)
T ss_dssp             EEEEESSCG-------------GGHHH-HHTTEEEEEEEEECC
T ss_pred             eEEEECCCh-------------HHHHH-HHHHhcCCCEEEEEe
Confidence            998864321             12445 578999999988653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.69  E-value=0.4  Score=42.84  Aligned_cols=96  Identities=20%  Similarity=0.380  Sum_probs=53.7

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc---hHHHHhcCCCcee
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND---ARAELESRKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D---a~~~l~~~~~~fD  177 (257)
                      .+++|+++|+|. |..+...++..+ .+|+++|.+++-.+.+++.+.        ..+.....+   ..+.+    ...|
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~G-a~V~~~d~~~~~~~~~~~~~g--------~~~~~~~~~~~~l~~~~----~~~D  231 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMG-AQVTILDVNHKRLQYLDDVFG--------GRVITLTATEANIKKSV----QHAD  231 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTT--------TSEEEEECCHHHHHHHH----HHCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHhcC--------ceEEEecCCHHHHHHHH----hCCC
Confidence            468999999853 222333344445 489999999988777665332        122222222   22233    3689


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +|+.....+..  ....+.+.+.     .+.|+++|+++.
T Consensus       232 vVi~~~g~~~~--~~~~li~~~~-----l~~mk~gg~iV~  264 (369)
T 2eez_A          232 LLIGAVLVPGA--KAPKLVTRDM-----LSLMKEGAVIVD  264 (369)
T ss_dssp             EEEECCC---------CCSCHHH-----HTTSCTTCEEEE
T ss_pred             EEEECCCCCcc--ccchhHHHHH-----HHhhcCCCEEEE
Confidence            99887653320  1124445443     345788998763

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=93.64  E-value=0.094  Score=46.23  Aligned_cols=97  Identities=23%  Similarity=0.316  Sum_probs=59.4

Q ss_pred             CCCCeEEEEecc--chHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CC-Cc
Q 025141          101 PNPKTIFIMGGG--EGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ES  175 (257)
Q Consensus       101 ~~~~~VL~IG~G--~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~-~~  175 (257)
                      .+.++||++|+|  .|..+.++++.. + .+|++++.+++-.+.+++. ..      +.-+.....|..+.+.. .. +.
T Consensus       169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~  240 (347)
T 1jvb_A          169 DPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRA-GA------DYVINASMQDPLAEIRRITESKG  240 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHH-TC------SEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHh-CC------CEEecCCCccHHHHHHHHhcCCC
Confidence            356899999987  444556666654 5 4899999999988888763 21      00000001233222332 22 47


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+|+.....            .+.++. +.+.|+++|.++.-
T Consensus       241 ~d~vi~~~g~------------~~~~~~-~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          241 VDAVIDLNNS------------EKTLSV-YPKALAKQGKYVMV  270 (347)
T ss_dssp             EEEEEESCCC------------HHHHTT-GGGGEEEEEEEEEC
T ss_pred             ceEEEECCCC------------HHHHHH-HHHHHhcCCEEEEE
Confidence            9999865431            123455 57889999988864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=93.63  E-value=0.26  Score=42.42  Aligned_cols=91  Identities=12%  Similarity=0.103  Sum_probs=58.4

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-HHHHhcCCCcee
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELESRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da-~~~l~~~~~~fD  177 (257)
                      .+.++||++|+  |.|..+.++++..+ .+|++++.+++-.+.+++. ..      +   .++..+- .++.+.. +.+|
T Consensus       124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-ga------~---~~~~~~~~~~~~~~~-~~~d  191 (302)
T 1iz0_A          124 RPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLALPLAL-GA------E---EAATYAEVPERAKAW-GGLD  191 (302)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSHHHHHT-TC------S---EEEEGGGHHHHHHHT-TSEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CC------C---EEEECCcchhHHHHh-cCce
Confidence            45689999997  45667777777666 4899999999888888763 11      1   1222111 2233222 5799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+. ...     +        .++. +.+.|+++|.++.-
T Consensus       192 ~vid-~g~-----~--------~~~~-~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          192 LVLE-VRG-----K--------EVEE-SLGLLAHGGRLVYI  217 (302)
T ss_dssp             EEEE-CSC-----T--------THHH-HHTTEEEEEEEEEC
T ss_pred             EEEE-CCH-----H--------HHHH-HHHhhccCCEEEEE
Confidence            9986 432     1        1345 57789999988753

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.63  E-value=0.074  Score=46.60  Aligned_cols=96  Identities=15%  Similarity=0.277  Sum_probs=61.2

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~f  176 (257)
                      .+.++||++|+  |.|..+.++++..+ .+|++++.+++-.+.+++.- .      +.-+.....|..+.+++ . ...+
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~g-a------~~~~~~~~~~~~~~~~~~~~~~g~  218 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKG-AHTIAVASTDEKLKIAKEYG-A------EYLINASKEDILRQVLKFTNGKGV  218 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTT-C------SEEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcC-C------cEEEeCCCchHHHHHHHHhCCCCc
Confidence            34689999994  55667777777766 48999999999888888741 1      10011111344444443 2 3579


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|+.....             +.++. +.+.|+++|.++.-
T Consensus       219 D~vid~~g~-------------~~~~~-~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          219 DASFDSVGK-------------DTFEI-SLAALKRKGVFVSF  246 (334)
T ss_dssp             EEEEECCGG-------------GGHHH-HHHHEEEEEEEEEC
T ss_pred             eEEEECCCh-------------HHHHH-HHHHhccCCEEEEE
Confidence            999865321             12345 46689999998864

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=93.62  E-value=0.14  Score=45.01  Aligned_cols=95  Identities=21%  Similarity=0.309  Sum_probs=61.2

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CC-Cce
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~-~~f  176 (257)
                      ...++||++|+  |.|..+.++++..+ .+|++++.+++-.+.+++. ..      +.-+... .|..+.+++ .. ..+
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-ga------~~v~~~~-~~~~~~v~~~~~~~g~  228 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMG-AKVIAVVNRTAATEFVKSV-GA------DIVLPLE-EGWAKAVREATGGAGV  228 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHH-TC------SEEEESS-TTHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CC------cEEecCc-hhHHHHHHHHhCCCCc
Confidence            34689999996  55677788888766 4999999999888888874 11      1111111 344444443 22 479


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|+-....     +        .++. +.+.|+++|.++.-
T Consensus       229 Dvvid~~g~-----~--------~~~~-~~~~l~~~G~iv~~  256 (342)
T 4eye_A          229 DMVVDPIGG-----P--------AFDD-AVRTLASEGRLLVV  256 (342)
T ss_dssp             EEEEESCC---------------CHHH-HHHTEEEEEEEEEC
T ss_pred             eEEEECCch-----h--------HHHH-HHHhhcCCCEEEEE
Confidence            999865432     1        1344 46789999988853

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.58  E-value=0.078  Score=46.63  Aligned_cols=97  Identities=12%  Similarity=0.122  Sum_probs=60.8

Q ss_pred             CCCCeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025141          101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~f  176 (257)
                      .+.++||++|+|  .|..+.++++..+ .+|++++.+++-.+.+++. ..      +.-+.....|..+.+.+ . ...+
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~l-ga------~~~~~~~~~~~~~~~~~~~~~~g~  214 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILN-FRLIAVTRNNKHTEELLRL-GA------AYVIDTSTAPLYETVMELTNGIGA  214 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHH-TC------SEEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhC-CC------cEEEeCCcccHHHHHHHHhCCCCC
Confidence            456899999986  5667777777666 4899999999988888873 21      10111111344444433 2 3479


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+|+-....     +       .....  .+.|+++|.++.-.
T Consensus       215 Dvvid~~g~-----~-------~~~~~--~~~l~~~G~iv~~G  243 (340)
T 3gms_A          215 DAAIDSIGG-----P-------DGNEL--AFSLRPNGHFLTIG  243 (340)
T ss_dssp             EEEEESSCH-----H-------HHHHH--HHTEEEEEEEEECC
T ss_pred             cEEEECCCC-----h-------hHHHH--HHHhcCCCEEEEEe
Confidence            999864321     1       22233  36899999998643

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=93.52  E-value=0.09  Score=46.77  Aligned_cols=93  Identities=18%  Similarity=0.229  Sum_probs=56.8

Q ss_pred             CCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH---HHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE---EVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       103 ~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~---~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .++||++|+|+ |..+.++++..+. +|++++.++   +-.+.+++. ...       .+. . .|..+.+.+....+|+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~-ga~-------~v~-~-~~~~~~~~~~~~~~d~  249 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEET-KTN-------YYN-S-SNGYDKLKDSVGKFDV  249 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHH-TCE-------EEE-C-TTCSHHHHHHHCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHh-CCc-------eec-h-HHHHHHHHHhCCCCCE
Confidence            68999999843 4455666665554 999999988   777777753 211       111 0 1222233222257999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHH-HHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFY-EFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~-~~~~~~~L~pgGil~~~~  219 (257)
                      |+.....     +       ..+ +. +.+.|+++|.++.-.
T Consensus       250 vid~~g~-----~-------~~~~~~-~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          250 IIDATGA-----D-------VNILGN-VIPLLGRNGVLGLFG  278 (366)
T ss_dssp             EEECCCC-----C-------THHHHH-HGGGEEEEEEEEECS
T ss_pred             EEECCCC-----h-------HHHHHH-HHHHHhcCCEEEEEe
Confidence            9865432     1       124 55 578899999887543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.51  E-value=0.41  Score=41.89  Aligned_cols=96  Identities=15%  Similarity=0.183  Sum_probs=60.7

Q ss_pred             CCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-CCCcee
Q 025141          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~-~~~~fD  177 (257)
                      +.++||++|+  |.|..+.++++..+ .+|++++.+++-.+.+++.+...      .-+.... .|..+.++. ....+|
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~~g~~------~~~d~~~~~~~~~~~~~~~~~~~d  227 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMG-CYVVGSAGSKEKVDLLKTKFGFD------DAFNYKEESDLTAALKRCFPNGID  227 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTSCCS------EEEETTSCSCSHHHHHHHCTTCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHcCCc------eEEecCCHHHHHHHHHHHhCCCCc
Confidence            4689999996  56667777777666 48999999999888887433211      0000000 133344433 235799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+....             .+.++. +.+.|+++|.++.-
T Consensus       228 ~vi~~~g-------------~~~~~~-~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          228 IYFENVG-------------GKMLDA-VLVNMNMHGRIAVC  254 (345)
T ss_dssp             EEEESSC-------------HHHHHH-HHTTEEEEEEEEEC
T ss_pred             EEEECCC-------------HHHHHH-HHHHHhcCCEEEEE
Confidence            9986532             123566 57899999998864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.45  E-value=0.23  Score=45.30  Aligned_cols=94  Identities=24%  Similarity=0.317  Sum_probs=60.2

Q ss_pred             CCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcC-CCcee
Q 025141          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYD  177 (257)
Q Consensus       103 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~-~~~fD  177 (257)
                      ..+|+++|+|-=+  +++.|.+ .+ ..|+++|.|++.++.+++.           .+.++.+|+.+  .|+.. -++.|
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~-~g-~~vvvId~d~~~v~~~~~~-----------g~~vi~GDat~~~~L~~agi~~A~   70 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLS-SG-VKMVVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE   70 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-TT-CCEEEEECCHHHHHHHHHT-----------TCCCEESCTTCHHHHHHTTTTTCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-CC-CCEEEEECCHHHHHHHHhC-----------CCeEEEcCCCCHHHHHhcCCCccC
Confidence            4579999997633  2344444 34 4899999999999988752           34577888754  45444 37899


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|++...++.        .+.....  ..+.+.|+..+++..
T Consensus        71 ~viv~~~~~~--------~n~~i~~--~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           71 VLINAIDDPQ--------TNLQLTE--MVKEHFPHLQIIARA  102 (413)
T ss_dssp             EEEECCSSHH--------HHHHHHH--HHHHHCTTCEEEEEE
T ss_pred             EEEECCCChH--------HHHHHHH--HHHHhCCCCeEEEEE
Confidence            9998765321        1122222  345677887666654

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=93.36  E-value=0.16  Score=46.23  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=40.1

Q ss_pred             CCCCeEEEEeccchHHHHHHH-hcCC-CcEEEEEECCHHHHHHHHhhhhh
Q 025141          101 PNPKTIFIMGGGEGSTAREIL-RHKT-VEKVVMCDIDEEVVEFCKSYLVV  148 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~-~~~~-~~~v~~VEid~~vi~~a~~~~~~  148 (257)
                      .+...|+|||++.|..+..++ +..+ ..+|.++|.+|...+..++++..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            355789999999999998877 4333 37999999999999999998765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.36  E-value=0.51  Score=35.50  Aligned_cols=69  Identities=19%  Similarity=0.231  Sum_probs=45.1

Q ss_pred             CCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcC-CCcee
Q 025141          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYD  177 (257)
Q Consensus       103 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~-~~~fD  177 (257)
                      .++|+++|+|.=+  +++.+.+. + .+|+++|.|++.++.+++.           .+.++.+|+.+  .++.. -+..|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~-g-~~V~~id~~~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~~~~~~~d   72 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAA-G-KKVLAVDKSKEKIELLEDE-----------GFDAVIADPTDESFYRSLDLEGVS   72 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-T-CCEEEEESCHHHHHHHHHT-----------TCEEEECCTTCHHHHHHSCCTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-CeEEEEECCHHHHHHHHHC-----------CCcEEECCCCCHHHHHhCCcccCC
Confidence            3589999996522  33444443 3 4899999999988776642           24566777643  34433 35799


Q ss_pred             EEEEcCC
Q 025141          178 VIIGDLA  184 (257)
Q Consensus       178 vIi~D~~  184 (257)
                      +|+....
T Consensus        73 ~vi~~~~   79 (141)
T 3llv_A           73 AVLITGS   79 (141)
T ss_dssp             EEEECCS
T ss_pred             EEEEecC
Confidence            9988655

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.32  E-value=0.079  Score=46.67  Aligned_cols=64  Identities=16%  Similarity=0.091  Sum_probs=51.0

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE  170 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~  170 (257)
                      ..+..-|||-.||+|+++.++.+..  .+.+++|+++...+++++.+....     .....+.+|+++...
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~g--r~~ig~e~~~~~~~~~~~r~~~~~-----~~~~~~~~~~~~i~~  313 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRFLDNN-----ISEEKITDIYNRILN  313 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGGSCSC-----SCHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHc
Confidence            3556789999999999999998863  689999999999999999876432     235666777777654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.29  E-value=0.25  Score=44.70  Aligned_cols=106  Identities=20%  Similarity=0.255  Sum_probs=57.3

Q ss_pred             CCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC-C-CCeEEEE----c----chHHHHh
Q 025141          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-D-PRLELVI----N----DARAELE  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~-~-~rv~i~~----~----Da~~~l~  170 (257)
                      ++++|++||+|.=+ .+..+++..+ .+|+++|.++...+.+++. ......+. + ....-+.    .    .-..-+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lG-a~V~v~D~~~~~l~~~~~l-Ga~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLG-AKTTGYDVRPEVAEQVRSV-GAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHT-CEEEEECSSGGGHHHHHHT-TCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            56899999998544 3334444345 4899999999988888763 11000000 0 0000000    0    0011122


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       171 ~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      +.-...|+||.-...|..  +...|.+.+.++     .+|||.+++
T Consensus       261 e~l~~aDIVI~tv~iPg~--~ap~Lvt~emv~-----~MkpGsVIV  299 (381)
T 3p2y_A          261 DAITKFDIVITTALVPGR--PAPRLVTAAAAT-----GMQPGSVVV  299 (381)
T ss_dssp             HHHTTCSEEEECCCCTTS--CCCCCBCHHHHH-----TSCTTCEEE
T ss_pred             HHHhcCCEEEECCCCCCc--ccceeecHHHHh-----cCCCCcEEE
Confidence            223679999987644431  223677876555     467887776

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.22  E-value=0.15  Score=45.28  Aligned_cols=97  Identities=18%  Similarity=0.307  Sum_probs=61.9

Q ss_pred             CCCCeEEEEe--ccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025141          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fD  177 (257)
                      ...++||++|  +|.|..+.++++..+ .+|++++.+++-.+.+++. ...      .-+.....|..+.++. ....+|
T Consensus       162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~-Ga~------~~~~~~~~~~~~~~~~~~~~g~D  233 (362)
T 2c0c_A          162 SEGKKVLVTAAAGGTGQFAMQLSKKAK-CHVIGTCSSDEKSAFLKSL-GCD------RPINYKTEPVGTVLKQEYPEGVD  233 (362)
T ss_dssp             CTTCEEEETTTTBTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TCS------EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHc-CCc------EEEecCChhHHHHHHHhcCCCCC
Confidence            4568999999  566777888888766 4899999999888888863 211      0000001233344433 335799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+....     .        +.++. +.+.|+++|.++.-.
T Consensus       234 ~vid~~g-----~--------~~~~~-~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          234 VVYESVG-----G--------AMFDL-AVDALATKGRLIVIG  261 (362)
T ss_dssp             EEEECSC-----T--------HHHHH-HHHHEEEEEEEEECC
T ss_pred             EEEECCC-----H--------HHHHH-HHHHHhcCCEEEEEe
Confidence            9985432     1        23455 567899999888643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.12  E-value=0.27  Score=37.91  Aligned_cols=98  Identities=20%  Similarity=0.132  Sum_probs=54.0

Q ss_pred             CCCCeEEEEeccchH-H-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhcC-CCc
Q 025141          101 PNPKTIFIMGGGEGS-T-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KES  175 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~--~~l~~~-~~~  175 (257)
                      ...++|+++|+|.=+ . +..+.+ .+ .+|+++|.+++.++.+++          .....++.+|..  +.+... -..
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~-~g-~~V~vid~~~~~~~~~~~----------~~g~~~~~~d~~~~~~l~~~~~~~   84 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASS-SG-HSVVVVDKNEYAFHRLNS----------EFSGFTVVGDAAEFETLKECGMEK   84 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH-TT-CEEEEEESCGGGGGGSCT----------TCCSEEEESCTTSHHHHHTTTGGG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh-CC-CeEEEEECCHHHHHHHHh----------cCCCcEEEecCCCHHHHHHcCccc
Confidence            356799999986533 2 233333 34 489999999876543321          122345555542  234332 357


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +|+|+....++.         ....... +.+.+.+...++....
T Consensus        85 ad~Vi~~~~~~~---------~~~~~~~-~~~~~~~~~~iv~~~~  119 (155)
T 2g1u_A           85 ADMVFAFTNDDS---------TNFFISM-NARYMFNVENVIARVY  119 (155)
T ss_dssp             CSEEEECSSCHH---------HHHHHHH-HHHHTSCCSEEEEECS
T ss_pred             CCEEEEEeCCcH---------HHHHHHH-HHHHHCCCCeEEEEEC
Confidence            999998754311         1122222 2345566667766553

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=93.08  E-value=0.19  Score=43.98  Aligned_cols=96  Identities=16%  Similarity=0.175  Sum_probs=59.4

Q ss_pred             CCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025141          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD  177 (257)
                      +.++||+.|+  |.|..+.++++..+ .+|++++.+++-.+.+++. ..      +.-+.....|..+.+.+  ....+|
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~Vi~~~~~~~~~~~~~~~-g~------~~~~d~~~~~~~~~i~~~~~~~~~d  216 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLG-ATVIGTVSTEEKAETARKL-GC------HHTINYSTQDFAEVVREITGGKGVD  216 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TC------SEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CC------CEEEECCCHHHHHHHHHHhCCCCCe
Confidence            4688999994  66777777777666 4899999999888888763 21      10011111233333332  234699


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+.....             +.++. +.+.|+++|.++.-.
T Consensus       217 ~vi~~~g~-------------~~~~~-~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          217 VVYDSIGK-------------DTLQK-SLDCLRPRGMCAAYG  244 (333)
T ss_dssp             EEEECSCT-------------TTHHH-HHHTEEEEEEEEECC
T ss_pred             EEEECCcH-------------HHHHH-HHHhhccCCEEEEEe
Confidence            99865431             11345 467899999887643

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.91  E-value=0.93  Score=42.05  Aligned_cols=111  Identities=16%  Similarity=0.199  Sum_probs=64.6

Q ss_pred             CCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccCCC--------CCCCeEEEEcchHHHH
Q 025141          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF--------SDPRLELVINDARAEL  169 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~~--------~~~rv~i~~~Da~~~l  169 (257)
                      ....+|.+||+|.=+  ++..+++. + -+|+++|+|++.++..++.- +......        ...++++ ..|..+.+
T Consensus         6 ~~~~~I~VIG~G~vG~~lA~~la~~-G-~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~   82 (478)
T 2y0c_A            6 HGSMNLTIIGSGSVGLVTGACLADI-G-HDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAV   82 (478)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHH
T ss_pred             CCCceEEEECcCHHHHHHHHHHHhC-C-CEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHh
Confidence            345799999999533  44555553 3 48999999999998887642 1100000        0123332 23443333


Q ss_pred             hcCCCceeEEEEcCCCCCCC-CcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          170 ESRKESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~~~~~~-~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                          +..|+||+..+.|... +.+.--+..+.++. +.+.|+++-+++...
T Consensus        83 ----~~aDvviiaVptp~~~~~~~dl~~v~~v~~~-i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           83 ----AHGDVQFIAVGTPPDEDGSADLQYVLAAARN-IGRYMTGFKVIVDKS  128 (478)
T ss_dssp             ----HHCSEEEECCCCCBCTTSSBCCHHHHHHHHH-HHHHCCSCEEEEECS
T ss_pred             ----hcCCEEEEEeCCCcccCCCccHHHHHHHHHH-HHHhcCCCCEEEEeC
Confidence                3479999988754311 11111234567777 678899987776543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=92.90  E-value=0.96  Score=41.64  Aligned_cols=108  Identities=16%  Similarity=0.162  Sum_probs=62.2

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCC--------CCCeEEEEcchHHHHhcC
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS--------DPRLELVINDARAELESR  172 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~--------~~rv~i~~~Da~~~l~~~  172 (257)
                      .+|.+||+|.=+  ++..+++. + -+|+++|++++.++..++... .....+.        ..++++ ..|..+.+   
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~-G-~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~---   76 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL-G-ANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV---   76 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG---
T ss_pred             CEEEEECcCHHHHHHHHHHHhc-C-CEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHH---
Confidence            479999998544  34445543 3 489999999999888776321 0000000        123443 34544444   


Q ss_pred             CCceeEEEEcCCCCCCCCcccCC-chHHHHHHHHcCcCCCCcEEEEec
Q 025141          173 KESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                       ...|+||+..+.+....-...+ +-.+.++. +.+.|+++-+++..+
T Consensus        77 -~~aDvViiaVptp~~~~~~~dl~~v~~v~~~-i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           77 -PEADIIFIAVGTPAGEDGSADMSYVLDAARS-IGRAMSRYILIVTKS  122 (450)
T ss_dssp             -GGCSEEEECCCCCBCTTSSBCCHHHHHHHHH-HHHHCCSCEEEEECS
T ss_pred             -hcCCEEEEEcCCCcccCCCcChHHHHHHHHH-HHhhCCCCCEEEEee
Confidence             3579999988754311100112 34566777 678898877776544

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=92.84  E-value=0.16  Score=44.82  Aligned_cols=95  Identities=18%  Similarity=0.181  Sum_probs=58.8

Q ss_pred             CeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025141          104 KTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (257)
Q Consensus       104 ~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi  180 (257)
                      ++||+.|+  |.|..+.++++..+..+|++++.+++-.+.+++.+...      .-+.....|..+.+.. ..+.+|+++
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~------~~~d~~~~~~~~~~~~~~~~~~d~vi  235 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFD------AAINYKKDNVAEQLRESCPAGVDVYF  235 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCS------EEEETTTSCHHHHHHHHCTTCEEEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc------eEEecCchHHHHHHHHhcCCCCCEEE
Confidence            89999997  44556666666665448999999998888777633211      0011111233334432 223799998


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ....             .+.++. +.+.|+++|.++.-
T Consensus       236 ~~~G-------------~~~~~~-~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          236 DNVG-------------GNISDT-VISQMNENSHIILC  259 (357)
T ss_dssp             ESCC-------------HHHHHH-HHHTEEEEEEEEEC
T ss_pred             ECCC-------------HHHHHH-HHHHhccCcEEEEE
Confidence            6542             133555 56789999998863

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.80  E-value=0.8  Score=40.81  Aligned_cols=131  Identities=18%  Similarity=0.142  Sum_probs=75.2

Q ss_pred             CCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhh----hccCCCCCCCeEEEEcchHHHHhcCCCc
Q 025141          102 NPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLV----VNKEAFSDPRLELVINDARAELESRKES  175 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~----~~~~~~~~~rv~i~~~Da~~~l~~~~~~  175 (257)
                      ...+|.+||+|.=+.  +..+++. + .+|+.++.+++.++..++.-.    +++..+ .+++++ ..|..+.+    +.
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~-G-~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l-~~~i~~-t~d~~ea~----~~   99 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARK-G-QKVRLWSYESDHVDEMQAEGVNNRYLPNYPF-PETLKA-YCDLKASL----EG   99 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTT-T-CCEEEECSCHHHHHHHHHHSSBTTTBTTCCC-CTTEEE-ESCHHHHH----TT
T ss_pred             cCCeEEEECccHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHHHHcCCCcccCCCCcc-CCCeEE-ECCHHHHH----hc
Confidence            346899999986443  4444443 3 479999999998887765321    111111 234443 34554444    35


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCccc
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~  255 (257)
                      .|+|++-.+.         ...++.++. ++..|+|+-+++......   ... . ..+.+.+++.+|.......+.|+|
T Consensus       100 aDvVilaVp~---------~~~~~vl~~-i~~~l~~~~ivvs~~kGi---~~~-t-~~~se~i~~~l~~~~~~vlsgP~~  164 (356)
T 3k96_A          100 VTDILIVVPS---------FAFHEVITR-MKPLIDAKTRIAWGTKGL---AKG-S-RLLHEVVATELGQVPMAVISGPSL  164 (356)
T ss_dssp             CCEEEECCCH---------HHHHHHHHH-HGGGCCTTCEEEECCCSC---BTT-T-BCHHHHHHHHHCSCCEEEEESSCC
T ss_pred             CCEEEECCCH---------HHHHHHHHH-HHHhcCCCCEEEEEeCCC---CcC-c-cCHHHHHHHHcCCCCEEEEECccH
Confidence            7999987542         135678888 788999888766432211   111 1 233444556565443444455554

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=92.70  E-value=0.19  Score=44.13  Aligned_cols=95  Identities=15%  Similarity=0.195  Sum_probs=59.6

Q ss_pred             CCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025141          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~fD  177 (257)
                      +.++||++|+  |.|..+.++++..+ .+|++++.+++-.+.+++. ..      +.-+.....|..+.+++ . ...+|
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G-~~Vi~~~~~~~~~~~~~~~-ga------~~~~d~~~~~~~~~~~~~~~~~~~d  237 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFG-ARVIATAGSEDKLRRAKAL-GA------DETVNYTHPDWPKEVRRLTGGKGAD  237 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TC------SEEEETTSTTHHHHHHHHTTTTCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CC------CEEEcCCcccHHHHHHHHhCCCCce
Confidence            4589999997  56677777777666 4899999999988888763 21      10011111233333432 2 24799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+.... +.            .++. +.+.|+++|.++.-
T Consensus       238 ~vi~~~g-~~------------~~~~-~~~~l~~~G~~v~~  264 (343)
T 2eih_A          238 KVVDHTG-AL------------YFEG-VIKATANGGRIAIA  264 (343)
T ss_dssp             EEEESSC-SS------------SHHH-HHHHEEEEEEEEES
T ss_pred             EEEECCC-HH------------HHHH-HHHhhccCCEEEEE
Confidence            9986643 11            1344 45678999988764

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=92.51  E-value=1.1  Score=43.94  Aligned_cols=45  Identities=13%  Similarity=0.062  Sum_probs=34.3

Q ss_pred             CCeEEEEeccchHHHHHHHhcC-----CCcEEEEEECCHHHHHHHHhhhh
Q 025141          103 PKTIFIMGGGEGSTAREILRHK-----TVEKVVMCDIDEEVVEFCKSYLV  147 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~-----~~~~v~~VEid~~vi~~a~~~~~  147 (257)
                      ..+|+||-||.|++..=+.+..     ....+.++|+|+..++.-+.+++
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp  261 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP  261 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence            3579999999999876554421     13467899999999999988764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=92.29  E-value=0.15  Score=45.11  Aligned_cols=96  Identities=19%  Similarity=0.294  Sum_probs=59.8

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fD  177 (257)
                      .+.++||++|+  |.|..+.++++..+ .+|++++.+++-.+.+++. ..      +.-+.....|..+.++. ....+|
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~l-Ga------~~~~~~~~~~~~~~~~~~~~~g~D  237 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFG-AEVYATAGSTGKCEACERL-GA------KRGINYRSEDFAAVIKAETGQGVD  237 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TC------SEEEETTTSCHHHHHHHHHSSCEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CC------CEEEeCCchHHHHHHHHHhCCCce
Confidence            34689999964  45667777787766 4899999999999888874 11      10011111233333322 246799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+.....     +        .++. +.+.|+++|.++.-
T Consensus       238 vvid~~g~-----~--------~~~~-~~~~l~~~G~iv~~  264 (353)
T 4dup_A          238 IILDMIGA-----A--------YFER-NIASLAKDGCLSII  264 (353)
T ss_dssp             EEEESCCG-----G--------GHHH-HHHTEEEEEEEEEC
T ss_pred             EEEECCCH-----H--------HHHH-HHHHhccCCEEEEE
Confidence            98865421     1        2344 46789999988754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=92.22  E-value=0.85  Score=40.88  Aligned_cols=96  Identities=19%  Similarity=0.335  Sum_probs=56.9

Q ss_pred             CCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhcCCCcee
Q 025141          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESRKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~---~Da~~~l~~~~~~fD  177 (257)
                      .+++|+++|+|.=+ .+...++..+. +|+++|.+++-.+.+++.+..        .+....   .|..+.+    ...|
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~--------~~~~~~~~~~~l~~~l----~~aD  233 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCG--------RIHTRYSSAYELEGAV----KRAD  233 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTT--------SSEEEECCHHHHHHHH----HHCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCC--------eeEeccCCHHHHHHHH----cCCC
Confidence            47899999985432 23333444454 899999999988877764431        111211   2223333    3689


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +|+.....|..  ....+.+.+.     .+.|+|+|+++.
T Consensus       234 vVi~~~~~p~~--~t~~li~~~~-----l~~mk~g~~iV~  266 (377)
T 2vhw_A          234 LVIGAVLVPGA--KAPKLVSNSL-----VAHMKPGAVLVD  266 (377)
T ss_dssp             EEEECCCCTTS--CCCCCBCHHH-----HTTSCTTCEEEE
T ss_pred             EEEECCCcCCC--CCcceecHHH-----HhcCCCCcEEEE
Confidence            99986643331  1124555543     346789998763

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.14  E-value=0.16  Score=44.22  Aligned_cols=96  Identities=11%  Similarity=0.069  Sum_probs=58.6

Q ss_pred             CCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025141          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~fD  177 (257)
                      ..++||+.|+  |.|..+.++++..+ .+|++++.+++-.+.+++. ..      +.-+.....|..+.+.+ . ...+|
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~~D  211 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKA-GA------WQVINYREEDLVERLKEITGGKKVR  211 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHH-TC------SEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------CEEEECCCccHHHHHHHHhCCCCce
Confidence            4689999994  55566666666555 4899999999888888763 21      00000001233333332 2 34699


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+....      +       +.++. +.+.|+++|.++.-.
T Consensus       212 ~vi~~~g------~-------~~~~~-~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          212 VVYDSVG------R-------DTWER-SLDCLQRRGLMVSFG  239 (327)
T ss_dssp             EEEECSC------G-------GGHHH-HHHTEEEEEEEEECC
T ss_pred             EEEECCc------h-------HHHHH-HHHHhcCCCEEEEEe
Confidence            9986643      1       12455 567899999988643

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=91.93  E-value=0.33  Score=42.64  Aligned_cols=93  Identities=17%  Similarity=0.320  Sum_probs=59.8

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCce
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~f  176 (257)
                      .+.++||++|+  |.|..+.++++..+. +|+++ .+++-.+.+++. ..      +. +. ...|..+.++.  ....+
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~l-Ga------~~-i~-~~~~~~~~~~~~~~~~g~  217 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDL-GA------TP-ID-ASREPEDYAAEHTAGQGF  217 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHH-TS------EE-EE-TTSCHHHHHHHHHTTSCE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHc-CC------CE-ec-cCCCHHHHHHHHhcCCCc
Confidence            34689999994  557777888887664 89999 888888888763 21      11 22 22344444433  23579


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|+-...     .        +.+.. +.+.|+++|.++.-
T Consensus       218 D~vid~~g-----~--------~~~~~-~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          218 DLVYDTLG-----G--------PVLDA-SFSAVKRFGHVVSC  245 (343)
T ss_dssp             EEEEESSC-----T--------HHHHH-HHHHEEEEEEEEES
T ss_pred             eEEEECCC-----c--------HHHHH-HHHHHhcCCeEEEE
Confidence            99885432     1        23455 46789999998864

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=91.73  E-value=3.3  Score=43.26  Aligned_cols=140  Identities=9%  Similarity=0.075  Sum_probs=86.4

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----------
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----------  171 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~----------  171 (257)
                      .-++++|-+|.|++..-+.+. +. ..+.++|+|+...+.-+.+++         ...++.+|..++++.          
T Consensus       851 ~l~viDLFsG~GGlslGfe~A-G~~~vv~avEid~~A~~ty~~N~p---------~~~~~~~DI~~l~~~~~~gdi~~~~  920 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQA-GISETLWAIEMWDPAAQAFRLNNP---------GTTVFTEDCNVLLKLVMAGEVTNSL  920 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHT-TSEEEEEEECCSHHHHHHHHHHCT---------TSEEECSCHHHHHHHHTTTCSBCSS
T ss_pred             CceEEecccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhCC---------CCcEeeccHHHHhHhhhccchhhhh
Confidence            457999999999999887764 44 468899999999999887753         345777887766421          


Q ss_pred             -----CCCceeEEEEcCCC-CCC-CCcc---------cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025141          172 -----RKESYDVIIGDLAD-PIE-GGPC---------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (257)
Q Consensus       172 -----~~~~fDvIi~D~~~-~~~-~~p~---------~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~  235 (257)
                           .....|+|+--++- +.+ .+..         ..| -.+|++. + +.++|.-+++=|+.....+.....+..++
T Consensus       921 ~~~lp~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L-~~~~lri-v-~~~rPk~fv~ENV~glls~~~g~~~~~il  997 (1330)
T 3av4_A          921 GQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSL-VVSFLSY-C-DYYRPRFFLLENVRNFVSYRRSMVLKLTL  997 (1330)
T ss_dssp             CCBCCCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSH-HHHHHHH-H-HHHCCSEEEEEEEGGGGTTTTTHHHHHHH
T ss_pred             hhhccccCccceEEecCCCcccccccccccccccchhhHH-HHHHHHH-H-HHhcCcEEEEeccHHHhccCccHHHHHHH
Confidence                 01368999988763 221 1110         011 2356664 3 56899877765652211122345677787


Q ss_pred             HHHhhhCCceEEEeecCccc
Q 025141          236 NTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       236 ~~l~~~F~~v~~~~~~~~~~  255 (257)
                      +.|.+.-=.+.........|
T Consensus       998 ~~L~~lGY~v~~~vLnA~dy 1017 (1330)
T 3av4_A          998 RCLVRMGYQCTFGVLQAGQY 1017 (1330)
T ss_dssp             HHHHHHTCEEEEEEEEGGGG
T ss_pred             HHHHhcCCeeeEEEecHHHc
Confidence            87776533344333343333

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=91.57  E-value=0.18  Score=44.58  Aligned_cols=96  Identities=13%  Similarity=0.181  Sum_probs=58.3

Q ss_pred             CCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025141          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~fD  177 (257)
                      +.++||++|+  |.|..+..+++..+ .+|++++.+++-.+.+++. ..      +.-+.....|..+.+.+ . ...+|
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~~d  233 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAG-AIPLVTAGSQKKLQMAEKL-GA------AAGFNYKKEDFSEATLKFTKGAGVN  233 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH-TC------SEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------cEEEecCChHHHHHHHHHhcCCCce
Confidence            4688999984  55666667777665 4899999999988888653 21      00001011233333332 2 24699


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+.....     +        .++. +.+.|+++|.++.-.
T Consensus       234 ~vi~~~G~-----~--------~~~~-~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          234 LILDCIGG-----S--------YWEK-NVNCLALDGRWVLYG  261 (354)
T ss_dssp             EEEESSCG-----G--------GHHH-HHHHEEEEEEEEECC
T ss_pred             EEEECCCc-----h--------HHHH-HHHhccCCCEEEEEe
Confidence            99866431     1        1344 456789999988643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=91.48  E-value=0.29  Score=43.31  Aligned_cols=96  Identities=17%  Similarity=0.114  Sum_probs=58.8

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCce
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~f  176 (257)
                      .+.++||+.|+  |.|..+.++++..+ .+|++++.+++-.+.+++.-.       +.-+.....|..+.+.+  ....+
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~ga-------~~~~d~~~~~~~~~~~~~~~~~~~  240 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQNGA-------HEVFNHREVNYIDKIKKYVGEKGI  240 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTC-------SEEEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChhHHHHHHHcCC-------CEEEeCCCchHHHHHHHHcCCCCc
Confidence            34689999996  55666677777666 489999999998888775411       10011111233333332  23479


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|+....     .        +.+.. ..+.|+++|.++.-
T Consensus       241 D~vi~~~G-----~--------~~~~~-~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          241 DIIIEMLA-----N--------VNLSK-DLSLLSHGGRVIVV  268 (351)
T ss_dssp             EEEEESCH-----H--------HHHHH-HHHHEEEEEEEEEC
T ss_pred             EEEEECCC-----h--------HHHHH-HHHhccCCCEEEEE
Confidence            99986532     1        12445 46789999988754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=91.38  E-value=0.53  Score=39.81  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=24.9

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~  136 (257)
                      ..++||++|+|+ |+.....+...++.+++.+|-|.
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            457999999974 44444434446788999998873

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=91.33  E-value=2.7  Score=38.91  Aligned_cols=110  Identities=15%  Similarity=0.149  Sum_probs=61.7

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccCCC-------CCCCeEEEEcchHHHHhcCC
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF-------SDPRLELVINDARAELESRK  173 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~~-------~~~rv~i~~~Da~~~l~~~~  173 (257)
                      .+|.+||+|.=+  ++..+++....-+|+++|++++.++..++.. +.....+       ...++++ ..|..+-+    
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~-t~~~~~~~----   84 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF-SSDIPKAI----   84 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHHHH----
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHHHh----
Confidence            589999998544  4555555421248999999999988776521 1000000       0012332 23433333    


Q ss_pred             CceeEEEEcCCCCCCCC-----cccCC-chHHHHHHHHcCcCCCCcEEEEec
Q 025141          174 ESYDVIIGDLADPIEGG-----PCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~-----p~~~L-~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ...|+||+..+.|....     -...+ +..+..+. +.+.|+++-+++..+
T Consensus        85 ~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVV~~S  135 (481)
T 2o3j_A           85 AEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRT-IAQYAGGPKIVVEKS  135 (481)
T ss_dssp             HHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHH-HHHHCCSCEEEEECS
T ss_pred             hcCCEEEEecCCccccccccccCCCcHHHHHHHHHH-HHHhCCCCCEEEECC
Confidence            24799999876543100     00112 24566777 678899887776443

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=91.27  E-value=1.6  Score=40.14  Aligned_cols=101  Identities=18%  Similarity=0.293  Sum_probs=61.8

Q ss_pred             CeEEEEeccch--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-----------hccCCCCCCCeEEEEcchHHHHh
Q 025141          104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-----------VNKEAFSDPRLELVINDARAELE  170 (257)
Q Consensus       104 ~~VL~IG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-----------~~~~~~~~~rv~i~~~Da~~~l~  170 (257)
                      ++|.+||+|.=  +++..+++. + -+|+++|++++.++.+++...           ...........++ ..|. +-+ 
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~-G-~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~-~~~-  112 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARV-G-ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST-KEL-  112 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-T-CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG-GGG-
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH-HHH-
Confidence            67999999962  345555553 4 489999999999887766421           1110001112233 4453 222 


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       171 ~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                         ...|+||...++..       -...+.++. +...++|+.+++.++.
T Consensus       113 ---~~aDlVIeaVpe~~-------~~k~~v~~~-l~~~~~~~~ii~snTs  151 (463)
T 1zcj_A          113 ---STVDLVVEAVFEDM-------NLKKKVFAE-LSALCKPGAFLCTNTS  151 (463)
T ss_dssp             ---TTCSEEEECCCSCH-------HHHHHHHHH-HHHHSCTTCEEEECCS
T ss_pred             ---CCCCEEEEcCCCCH-------HHHHHHHHH-HHhhCCCCeEEEeCCC
Confidence               45799999875311       123567777 6788999988887653

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.22  E-value=0.35  Score=40.46  Aligned_cols=80  Identities=15%  Similarity=0.230  Sum_probs=45.8

Q ss_pred             HHHHHHHhhcCCCCCeEEEEeccchHHH--HHHHhcCCCcEEEEEE--CCHHHHHHHHhhhhhccCCCCCCCeEEEEcch
Q 025141           90 ESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCD--IDEEVVEFCKSYLVVNKEAFSDPRLELVINDA  165 (257)
Q Consensus        90 e~l~~~~l~~~~~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VE--id~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da  165 (257)
                      +.+...|+....+.++||++|+|.=+..  +.+++. + .+|++|+  +++++.+++.+           .+++++..+.
T Consensus        18 ~~~~~~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~-G-A~VtVvap~~~~~l~~l~~~-----------~~i~~i~~~~   84 (223)
T 3dfz_A           18 EGRHMYTVMLDLKGRSVLVVGGGTIATRRIKGFLQE-G-AAITVVAPTVSAEINEWEAK-----------GQLRVKRKKV   84 (223)
T ss_dssp             ----CCEEEECCTTCCEEEECCSHHHHHHHHHHGGG-C-CCEEEECSSCCHHHHHHHHT-----------TSCEEECSCC
T ss_pred             cccCccccEEEcCCCEEEEECCCHHHHHHHHHHHHC-C-CEEEEECCCCCHHHHHHHHc-----------CCcEEEECCC
Confidence            4555678888888999999999865543  334443 3 5788885  44444444432           3455554332


Q ss_pred             HHHHhcCCCceeEEEEcCCC
Q 025141          166 RAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       166 ~~~l~~~~~~fDvIi~D~~~  185 (257)
                      .   ...-..+|+||....+
T Consensus        85 ~---~~dL~~adLVIaAT~d  101 (223)
T 3dfz_A           85 G---EEDLLNVFFIVVATND  101 (223)
T ss_dssp             C---GGGSSSCSEEEECCCC
T ss_pred             C---HhHhCCCCEEEECCCC
Confidence            1   1222568999876543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.11  E-value=1.9  Score=36.38  Aligned_cols=90  Identities=16%  Similarity=0.100  Sum_probs=54.3

Q ss_pred             CeEEEEeccch--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC-ceeEEE
Q 025141          104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVII  180 (257)
Q Consensus       104 ~~VL~IG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~-~fDvIi  180 (257)
                      ++|.+||+|.=  .++..+.+.....+|+++|.+++.++.++++ ..     . .  . ...|..+.+    . ..|+|+
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~-----~-~--~-~~~~~~~~~----~~~aDvVi   67 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GI-----I-D--E-GTTSIAKVE----DFSPDFVM   67 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TS-----C-S--E-EESCGGGGG----GTCCSEEE
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC-CC-----c-c--c-ccCCHHHHh----cCCCCEEE
Confidence            47999998853  2344444432123799999999988776643 11     0 0  1 123333333    3 689999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +-.+..         ...+.++. +...|+++.+++.
T Consensus        68 lavp~~---------~~~~v~~~-l~~~l~~~~iv~~   94 (281)
T 2g5c_A           68 LSSPVR---------TFREIAKK-LSYILSEDATVTD   94 (281)
T ss_dssp             ECSCHH---------HHHHHHHH-HHHHSCTTCEEEE
T ss_pred             EcCCHH---------HHHHHHHH-HHhhCCCCcEEEE
Confidence            876421         23466777 6778898886654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.91  E-value=1.1  Score=35.17  Aligned_cols=95  Identities=17%  Similarity=0.135  Sum_probs=56.0

Q ss_pred             CCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhcC--CCce
Q 025141          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR--KESY  176 (257)
Q Consensus       103 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~--~~l~~~--~~~f  176 (257)
                      ..+|+++|+|.=+  +++.+.+..+ .+|+++|.|++-++.+++.           .+.++.+|+.  +.+...  -+.+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g-~~V~vid~~~~~~~~~~~~-----------g~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYG-KISLGIEIREEAAQQHRSE-----------GRNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHC-SCEEEEESCHHHHHHHHHT-----------TCCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccC-CeEEEEECCHHHHHHHHHC-----------CCCEEEcCCCCHHHHHhccCCCCC
Confidence            4689999987433  2334433203 4799999999887776642           2345556653  334443  4679


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+|+.-.++..        .+......  .+.+.|++.++...
T Consensus       107 d~vi~~~~~~~--------~~~~~~~~--~~~~~~~~~ii~~~  139 (183)
T 3c85_A          107 KLVLLAMPHHQ--------GNQTALEQ--LQRRNYKGQIAAIA  139 (183)
T ss_dssp             CEEEECCSSHH--------HHHHHHHH--HHHTTCCSEEEEEE
T ss_pred             CEEEEeCCChH--------HHHHHHHH--HHHHCCCCEEEEEE
Confidence            99998654311        12233333  34667777777654

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=90.89  E-value=0.67  Score=41.15  Aligned_cols=95  Identities=17%  Similarity=0.298  Sum_probs=56.8

Q ss_pred             CCCeEEEEe--ccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          102 NPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      +.++||++|  +|.|..+.++++..+ .+|++++ +++-.+.+++. ..      +.-+.....|..+.+... ..+|+|
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~G-a~Vi~~~-~~~~~~~~~~l-Ga------~~v~~~~~~~~~~~~~~~-~g~D~v  252 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWD-AHVTAVC-SQDASELVRKL-GA------DDVIDYKSGSVEEQLKSL-KPFDFI  252 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE-CGGGHHHHHHT-TC------SEEEETTSSCHHHHHHTS-CCBSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEe-ChHHHHHHHHc-CC------CEEEECCchHHHHHHhhc-CCCCEE
Confidence            457999999  455667778888766 4888888 66666777653 11      100111112334444432 469999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +-....     +      ...+.. ..+.|+++|.++.-
T Consensus       253 id~~g~-----~------~~~~~~-~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          253 LDNVGG-----S------TETWAP-DFLKKWSGATYVTL  279 (375)
T ss_dssp             EESSCT-----T------HHHHGG-GGBCSSSCCEEEES
T ss_pred             EECCCC-----h------hhhhHH-HHHhhcCCcEEEEe
Confidence            855431     1      012344 56789999998864

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=90.86  E-value=0.2  Score=43.54  Aligned_cols=71  Identities=18%  Similarity=0.159  Sum_probs=45.5

Q ss_pred             CceeEEEEcCCCCCCCCcc-----cCCchHH-HHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025141          174 ESYDVIIGDLADPIEGGPC-----YKLYTKS-FYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC  247 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p~-----~~L~t~e-f~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  247 (257)
                      ++||+|++|...+.. +..     .+.-... ..+. +.++|+|||.+++..-.    ...+..+.+...|++.|..|+.
T Consensus       205 ~k~DvV~SDMApn~s-Gh~yqQC~DHarii~Lal~f-A~~vLkPGGtfV~Kvyg----gaDr~se~lv~~LaR~F~~Vr~  278 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYK-YHHYQQCEDHAIKLSMLTKK-ACLHLNPGGTCVSIGYG----YADRASESIIGAIARQFKFSRV  278 (320)
T ss_dssp             CCEEEEEEECCCCCC-SCHHHHHHHHHHHHHHTHHH-HGGGEEEEEEEEEEECC----CCSHHHHHHHHHHHTTEEEEEE
T ss_pred             CcCCEEEEcCCCCCC-CccccccchHHHHHHHHHHH-HHHhcCCCceEEEEEec----CCcccHHHHHHHHHHhcceeee
Confidence            679999999875442 211     0000001 2333 46899999999987511    1234567899999999998887


Q ss_pred             Eee
Q 025141          248 ALF  250 (257)
Q Consensus       248 ~~~  250 (257)
                      ..-
T Consensus       279 vKP  281 (320)
T 2hwk_A          279 CKP  281 (320)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            543

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=90.67  E-value=0.73  Score=36.50  Aligned_cols=105  Identities=16%  Similarity=0.248  Sum_probs=68.1

Q ss_pred             cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC----CC
Q 025141           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----KE  174 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~----~~  174 (257)
                      ...-+.-||++|.|.|-+=.++....+..+|.++|-.-.      -| +  .  -.-|.-.++.+|+++-+...    ..
T Consensus        37 v~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~------~h-p--~--~~P~~e~~ilGdi~~tL~~~~~r~g~  105 (174)
T 3iht_A           37 TAGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVA------SH-P--D--STPPEAQLILGDIRETLPATLERFGA  105 (174)
T ss_dssp             TTTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCC------CC-G--G--GCCCGGGEEESCHHHHHHHHHHHHCS
T ss_pred             hcCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeec------cC-C--C--CCCchHheecccHHHHHHHHHHhcCC
Confidence            344567899999999999888888767789999986211      11 1  0  01245578999999988653    34


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +--++=.|.-.+.   +.....+..++.-.+..+|.|||+++-
T Consensus       106 ~a~LaHaD~G~g~---~~~d~a~a~~lsplI~~~la~GGi~vS  145 (174)
T 3iht_A          106 TASLVHADLGGHN---REKNDRFARLISPLIEPHLAQGGLMVS  145 (174)
T ss_dssp             CEEEEEECCCCSC---HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceEEEEeecCCCC---cchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence            4555555654332   222233334444436899999998874

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=90.65  E-value=0.7  Score=41.91  Aligned_cols=42  Identities=24%  Similarity=0.266  Sum_probs=30.8

Q ss_pred             CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 025141          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKS  144 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~  144 (257)
                      .+++|+++|+|.=+. +..+++..+ .+|+++|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G-a~V~v~D~~~~~~~~~~~  213 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQS  213 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCGGGHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHH
Confidence            478999999975443 344455455 489999999998877755

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=90.61  E-value=0.79  Score=40.68  Aligned_cols=96  Identities=11%  Similarity=0.206  Sum_probs=59.2

Q ss_pred             CCCCeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025141          101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fD  177 (257)
                      .+.++||++|++  .|.++.++++..+. +|+++- +++-.+.++++-.       +.-+.....|..+.+++ +++++|
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa-------~~vi~~~~~~~~~~v~~~t~g~~d  233 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKSRGA-------EEVFDYRAPNLAQTIRTYTKNNLR  233 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTC-------SEEEETTSTTHHHHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHHcCC-------cEEEECCCchHHHHHHHHccCCcc
Confidence            456899999983  67788888887764 777774 7877788876411       11111112344455543 345699


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcC-CCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L-~pgGil~~~  218 (257)
                      +|+-...     .       .+.++. +.+.| +++|.++.-
T Consensus       234 ~v~d~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~  262 (371)
T 3gqv_A          234 YALDCIT-----N-------VESTTF-CFAAIGRAGGHYVSL  262 (371)
T ss_dssp             EEEESSC-----S-------HHHHHH-HHHHSCTTCEEEEES
T ss_pred             EEEECCC-----c-------hHHHHH-HHHHhhcCCCEEEEE
Confidence            9885432     1       133455 45677 689988753

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=90.48  E-value=0.71  Score=41.44  Aligned_cols=42  Identities=19%  Similarity=0.273  Sum_probs=30.8

Q ss_pred             CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 025141          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKS  144 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~  144 (257)
                      .+++|+++|+|.=+. +..+++..+. +|+++|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            578999999975443 3444554554 79999999988777766

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.70  E-value=1.5  Score=31.20  Aligned_cols=69  Identities=17%  Similarity=0.186  Sum_probs=41.1

Q ss_pred             CCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcCCCceeE
Q 025141          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRKESYDV  178 (257)
Q Consensus       103 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~~~~fDv  178 (257)
                      .++|+++|+|.=+  ++..+++. +..+|++++.+++-.+..+.           ..++++..|..+  .+...-..+|+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~~~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~d~   72 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDLAALAVLNR-----------MGVATKQVDAKDEAGLAKALGGFDA   72 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCHHHHHHHHT-----------TTCEEEECCTTCHHHHHHHTTTCSE
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHh-----------CCCcEEEecCCCHHHHHHHHcCCCE
Confidence            3689999984221  23344443 43589999999987766551           234455555432  22222247899


Q ss_pred             EEEcC
Q 025141          179 IIGDL  183 (257)
Q Consensus       179 Ii~D~  183 (257)
                      |+...
T Consensus        73 vi~~~   77 (118)
T 3ic5_A           73 VISAA   77 (118)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99875

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=89.65  E-value=0.73  Score=41.94  Aligned_cols=44  Identities=16%  Similarity=0.183  Sum_probs=34.1

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (257)
                      .+.++||++|+  |-|..+.++++..+ .++++++.+++-.+.+++.
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~G-a~vi~~~~~~~~~~~~~~l  264 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGG-GIPVAVVSSAQKEAAVRAL  264 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc
Confidence            34689999996  45667778888766 5888889999988888764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=89.58  E-value=8.3  Score=33.16  Aligned_cols=112  Identities=13%  Similarity=0.105  Sum_probs=66.2

Q ss_pred             CCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECC--HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025141          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid--~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      ...+|.+||+|.=+  ++..+++. +..+|+++|.+  ++..+.+++.           .++ ...+..+.++    ..|
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~-G~~~V~~~dr~~~~~~~~~~~~~-----------g~~-~~~~~~e~~~----~aD   85 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQA-GAIDMAAYDAASAESWRPRAEEL-----------GVS-CKASVAEVAG----ECD   85 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHH-SCCEEEEECSSCHHHHHHHHHHT-----------TCE-ECSCHHHHHH----HCS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHC-CCCeEEEEcCCCCHHHHHHHHHC-----------CCE-EeCCHHHHHh----cCC
Confidence            34689999998533  45555554 32489999997  5666655542           112 1234444443    469


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCce
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG  245 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v  245 (257)
                      +||+-.+.+.         ..+.++. +...|+++.+++ +..+.    .+....++.+.+.+.++.+
T Consensus        86 vVi~~vp~~~---------~~~~~~~-l~~~l~~~~ivv-d~st~----~~~~~~~~~~~~~~~~~g~  138 (312)
T 3qsg_A           86 VIFSLVTAQA---------ALEVAQQ-AGPHLCEGALYA-DFTSC----SPAVKRAIGDVISRHRPSA  138 (312)
T ss_dssp             EEEECSCTTT---------HHHHHHH-HGGGCCTTCEEE-ECCCC----CHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEecCchh---------HHHHHHh-hHhhcCCCCEEE-EcCCC----CHHHHHHHHHHHHhhcCCC
Confidence            9999876432         2345677 688899887766 43221    2444556666666654333

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=89.57  E-value=2.3  Score=37.41  Aligned_cols=105  Identities=10%  Similarity=0.131  Sum_probs=63.6

Q ss_pred             CCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC--------CCeEEEEcc
Q 025141          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD--------PRLELVIND  164 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~--------~rv~i~~~D  164 (257)
                      |...+|.+||+|.=+  ++..++.. + -+|+.+|++++.++.++++....      ......        .+++. ..|
T Consensus         4 p~~~~VaViGaG~MG~giA~~~a~~-G-~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~   80 (319)
T 3ado_A            4 PAAGDVLIVGSGLVGRSWAMLFASG-G-FRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTN   80 (319)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHT-T-CCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECC
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccc
Confidence            456799999998644  34444443 4 48999999999988877654211      111111        12222 233


Q ss_pred             hHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          165 ARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       165 a~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ..+.+    ...|+|+=..+...       -.-++.|++ +.+.++|+-+|+.|+.
T Consensus        81 l~~a~----~~ad~ViEav~E~l-------~iK~~lf~~-l~~~~~~~aIlaSNTS  124 (319)
T 3ado_A           81 LAEAV----EGVVHIQECVPENL-------DLKRKIFAQ-LDSIVDDRVVLSSSSS  124 (319)
T ss_dssp             HHHHT----TTEEEEEECCCSCH-------HHHHHHHHH-HHTTCCSSSEEEECCS
T ss_pred             hHhHh----ccCcEEeeccccHH-------HHHHHHHHH-HHHHhhhcceeehhhh
Confidence            32322    45788886655311       124688898 7999999999998864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=89.44  E-value=0.39  Score=40.54  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=24.1

Q ss_pred             CCCeEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~  136 (257)
                      ..++||++|+|+ |+. +..|++ .++.+++.+|-|.
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~-~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLAS-AGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHH-cCCCeEEEEcCCC
Confidence            357999999974 332 344444 4678999999996

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=89.37  E-value=2.6  Score=36.51  Aligned_cols=98  Identities=16%  Similarity=0.238  Sum_probs=57.6

Q ss_pred             CCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCC-CCCeEEEEcchHHHHhcCCCcee
Q 025141          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFS-DPRLELVINDARAELESRKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~-~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      ...+|++||+|.=+  ++..+++. + .+|+.+ .+++.++..++. +........ ..++.. ..|.. .+    +.+|
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~-G-~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~-~~~~~-~~----~~~D   88 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARA-G-HEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSA-SSDPS-AV----QGAD   88 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHT-T-CEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEE-ESCGG-GG----TTCS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHC-C-CeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeee-eCCHH-Hc----CCCC
Confidence            45689999998544  34455543 3 489999 999888777653 211100000 011111 23321 11    5689


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|++-.+.         ....+.++. ++..|+|+.+++..
T Consensus        89 ~vilavk~---------~~~~~~l~~-l~~~l~~~~~iv~~  119 (318)
T 3hwr_A           89 LVLFCVKS---------TDTQSAALA-MKPALAKSALVLSL  119 (318)
T ss_dssp             EEEECCCG---------GGHHHHHHH-HTTTSCTTCEEEEE
T ss_pred             EEEEEccc---------ccHHHHHHH-HHHhcCCCCEEEEe
Confidence            99997542         135788888 79999999877654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=89.36  E-value=2.1  Score=37.29  Aligned_cols=98  Identities=16%  Similarity=0.199  Sum_probs=58.7

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh--hccCCCC-CCCeEEEEcchHHHHhcCCCceeE
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV--VNKEAFS-DPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~--~~~~~~~-~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+|.+||+|.-+  ++..+.+. + .+|++++.+++.++..++...  ..+.... ..++.....|..+.+    ..+|+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~D~   78 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK-G-QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDADV   78 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-C-CEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH----hcCCE
Confidence            589999998633  34444443 3 479999999988877665422  1110000 001112334544433    36899


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      |++-.+..         ...+.++. +...|+++.+++.
T Consensus        79 vi~~v~~~---------~~~~~~~~-l~~~l~~~~~vv~  107 (359)
T 1bg6_A           79 ILIVVPAI---------HHASIAAN-IASYISEGQLIIL  107 (359)
T ss_dssp             EEECSCGG---------GHHHHHHH-HGGGCCTTCEEEE
T ss_pred             EEEeCCch---------HHHHHHHH-HHHhCCCCCEEEE
Confidence            99986531         13677888 7888999886654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=89.23  E-value=5.5  Score=32.96  Aligned_cols=78  Identities=13%  Similarity=0.106  Sum_probs=49.6

Q ss_pred             CCCCeEEEEeccch--H---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------H
Q 025141          101 PNPKTIFIMGGGEG--S---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------L  169 (257)
Q Consensus       101 ~~~~~VL~IG~G~G--~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l  169 (257)
                      .+.+.||+.|++++  .   +++.+++. + .+|++++.++...+.+++.....    ...++.++..|..+.      +
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~   78 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEA-G-ARLIFTYAGERLEKSVHELAGTL----DRNDSIILPCDVTNDAEIETCF   78 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHT-T-CEEEEEESSGGGHHHHHHHHHTS----SSCCCEEEECCCSSSHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHC-C-CEEEEecCchHHHHHHHHHHHhc----CCCCceEEeCCCCCHHHHHHHH
Confidence            35689999998632  2   45666664 4 58999998876666555544322    234788888776432      2


Q ss_pred             hc---CCCceeEEEEcCC
Q 025141          170 ES---RKESYDVIIGDLA  184 (257)
Q Consensus       170 ~~---~~~~fDvIi~D~~  184 (257)
                      +.   ..++.|+++..+.
T Consensus        79 ~~~~~~~g~id~li~~Ag   96 (266)
T 3oig_A           79 ASIKEQVGVIHGIAHCIA   96 (266)
T ss_dssp             HHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHhCCeeEEEEccc
Confidence            21   2257899999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=89.13  E-value=2.6  Score=36.02  Aligned_cols=102  Identities=17%  Similarity=0.264  Sum_probs=61.2

Q ss_pred             CCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----c-cCCCCC------------CCeEEEE
Q 025141          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----N-KEAFSD------------PRLELVI  162 (257)
Q Consensus       103 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~-~~~~~~------------~rv~i~~  162 (257)
                      -++|.+||+|.=+  ++..+++. + .+|+++|.+++.++.+++....     . ......            .++++ .
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~-G-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-~   91 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAAT-G-HTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-S   91 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-E
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-e
Confidence            3689999998633  45556554 3 4899999999998876553210     0 000100            13333 2


Q ss_pred             cchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       163 ~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .|..+-+    ...|+||...+...       -...++++. +.+.++|+.+++.+.
T Consensus        92 ~~~~~~~----~~aD~Vi~avp~~~-------~~~~~v~~~-l~~~~~~~~iv~s~t  136 (302)
T 1f0y_A           92 TDAASVV----HSTDLVVEAIVENL-------KVKNELFKR-LDKFAAEHTIFASNT  136 (302)
T ss_dssp             SCHHHHT----TSCSEEEECCCSCH-------HHHHHHHHH-HTTTSCTTCEEEECC
T ss_pred             cCHHHhh----cCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEECC
Confidence            3433233    45799998875321       113467777 688888888777654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=89.13  E-value=0.98  Score=39.63  Aligned_cols=46  Identities=20%  Similarity=0.214  Sum_probs=39.8

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCH---HHHHHHHhhhh
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDE---EVVEFCKSYLV  147 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~---~vi~~a~~~~~  147 (257)
                      ..+...|||--||+|+++.++.+..  .+.+++|+++   ..++++++.+.
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~~--r~~ig~e~~~~~~~~~~~~~~Rl~  288 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTFLQ  288 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHcC--CcEEEEECCccHHHHHHHHHHHHH
Confidence            3566789999999999999999873  6899999999   99999998875

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=89.05  E-value=0.87  Score=38.58  Aligned_cols=77  Identities=12%  Similarity=0.164  Sum_probs=51.0

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH----------
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE----------  168 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~----------  168 (257)
                      +.+.||+.|+++|.   +++.+++. + .+|.+++.++.-.+.+.+.+...    ...++.++..|..+.          
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~-G-~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dl~~~~~~v~~~~~~   84 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSN-G-IMVVLTCRDVTKGHEAVEKLKNS----NHENVVFHQLDVTDPIATMSSLADF   84 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTT----TCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc----CCCceEEEEccCCCcHHHHHHHHHH
Confidence            56789999987653   45555554 4 58999999988776655544322    235788888887543          


Q ss_pred             HhcCCCceeEEEEcCC
Q 025141          169 LESRKESYDVIIGDLA  184 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~  184 (257)
                      +....++.|++|.++.
T Consensus        85 ~~~~~g~iD~lv~nAg  100 (311)
T 3o26_A           85 IKTHFGKLDILVNNAG  100 (311)
T ss_dssp             HHHHHSSCCEEEECCC
T ss_pred             HHHhCCCCCEEEECCc
Confidence            1112257999999875

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=89.00  E-value=0.62  Score=40.91  Aligned_cols=95  Identities=15%  Similarity=0.133  Sum_probs=54.3

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fD  177 (257)
                      .+.++||++|+  +.|.++.++++..+..+|++++ +++-.+.++  +..      +.-+. ...|..+.+++ .++.+|
T Consensus       141 ~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~ga------~~~~~-~~~~~~~~~~~~~~~g~D  210 (349)
T 4a27_A          141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DSV------THLFD-RNADYVQEVKRISAEGVD  210 (349)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GGS------SEEEE-TTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cCC------cEEEc-CCccHHHHHHHhcCCCce
Confidence            34689999997  3466777777765456888887 444445554  221      11111 22344444433 346799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+-....     +       . ++. +.+.|+++|.++.-.
T Consensus       211 vv~d~~g~-----~-------~-~~~-~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          211 IVLDCLCG-----D-------N-TGK-GLSLLKPLGTYILYG  238 (349)
T ss_dssp             EEEEECC---------------------CTTEEEEEEEEEEC
T ss_pred             EEEECCCc-----h-------h-HHH-HHHHhhcCCEEEEEC
Confidence            99854421     1       1 134 578999999998643

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=88.96  E-value=6.9  Score=33.14  Aligned_cols=76  Identities=20%  Similarity=0.364  Sum_probs=47.6

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHH-HHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEE-VVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~-vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~  171 (257)
                      +.+.||+.|+++|.   +++.+++. + .+|.+++.+++ ..+...+....     ...++.++..|..+.      ++.
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~~~v~~~~~~  118 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKE-G-ANIAIAYLDEEGDANETKQYVEK-----EGVKCVLLPGDLSDEQHCKDIVQE  118 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESSCHHHHHHHHHHHHT-----TTCCEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEeCCchHHHHHHHHHHHh-----cCCcEEEEECCCCCHHHHHHHHHH
Confidence            45789999987654   44555553 3 58999998865 33333333322     135788888887442      211


Q ss_pred             ---CCCceeEEEEcCC
Q 025141          172 ---RKESYDVIIGDLA  184 (257)
Q Consensus       172 ---~~~~fDvIi~D~~  184 (257)
                         .-++.|+++.++.
T Consensus       119 ~~~~~g~iD~lvnnAg  134 (291)
T 3ijr_A          119 TVRQLGSLNILVNNVA  134 (291)
T ss_dssp             HHHHHSSCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence               2257899999875

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=88.90  E-value=7.1  Score=35.77  Aligned_cols=108  Identities=16%  Similarity=0.171  Sum_probs=58.4

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccCCC-------CCCCeEEEEcchHHHHhcCC
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF-------SDPRLELVINDARAELESRK  173 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~~-------~~~rv~i~~~Da~~~l~~~~  173 (257)
                      .+|.+||+|.=+  ++..+++.....+|+++|++++.++..++.- +.....+       ...++++ ..|..+.+    
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~-t~~~~e~~----   80 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF-STNIDDAI----   80 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHHHH----
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHHHH----
Confidence            589999998543  4555555421248999999999887765421 0000000       0012332 23433333    


Q ss_pred             CceeEEEEcCCCCCCCCc-----ccCC-chHHHHHHHHcCcCCCCcEEEE
Q 025141          174 ESYDVIIGDLADPIEGGP-----CYKL-YTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p-----~~~L-~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ...|+|++-.+.|.....     ...| +..+..+. +.+.|+++.+++.
T Consensus        81 ~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~-i~~~l~~g~iVV~  129 (467)
T 2q3e_A           81 KEADLVFISVNTPTKTYGMGKGRAADLKYIEACARR-IVQNSNGYKIVTE  129 (467)
T ss_dssp             HHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHH-HHHTCCSEEEEEE
T ss_pred             hcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHH-HHhhCCCCCEEEE
Confidence            247999998875432100     0011 12456666 5778888776653

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=88.71  E-value=0.46  Score=41.25  Aligned_cols=91  Identities=13%  Similarity=0.157  Sum_probs=53.5

Q ss_pred             eEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEE
Q 025141          105 TIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG  181 (257)
Q Consensus       105 ~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi~  181 (257)
                      +||++|+  |.|..+.++++..+ .+|++++.+++-.+.+++. ...      .-+.....| .+.++. ....+|+|+-
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~G-a~vi~~~~~~~~~~~~~~l-Ga~------~~i~~~~~~-~~~~~~~~~~~~d~vid  222 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAAEHDYLRVL-GAK------EVLAREDVM-AERIRPLDKQRWAAAVD  222 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTTCHHHHHHT-TCS------EEEECC----------CCSCCEEEEEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-CCc------EEEecCCcH-HHHHHHhcCCcccEEEE
Confidence            7999996  55667778888766 4799999998888888763 211      000100111 112222 2357999875


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ....     +        .++. +.+.|+++|.++.-
T Consensus       223 ~~g~-----~--------~~~~-~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          223 PVGG-----R--------TLAT-VLSRMRYGGAVAVS  245 (328)
T ss_dssp             CSTT-----T--------THHH-HHHTEEEEEEEEEC
T ss_pred             CCcH-----H--------HHHH-HHHhhccCCEEEEE
Confidence            4321     1        1344 46789999998864

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=88.68  E-value=1.5  Score=38.00  Aligned_cols=97  Identities=14%  Similarity=0.275  Sum_probs=59.8

Q ss_pred             CCCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ..-++|-+||+|.  ++++..++ . + -+|+++|.+++.++.+++.+  ...  .-.+++.. .|..+ +    ..-|+
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-a-G-~~V~v~d~~~~~~~~~~~~l--~~~--~~~~i~~~-~~~~~-~----~~aDl   76 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-S-K-HEVVLQDVSEKALEAAREQI--PEE--LLSKIEFT-TTLEK-V----KDCDI   76 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-T-T-SEEEEECSCHHHHHHHHHHS--CGG--GGGGEEEE-SSCTT-G----GGCSE
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-c-C-CEEEEEECCHHHHHHHHHHH--HHH--HhCCeEEe-CCHHH-H----cCCCE
Confidence            4568999999994  44666666 4 4 48999999999999888762  100  00134422 33222 2    35799


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ||...++..       -....+|.. +...  |+.+++.|++
T Consensus        77 Vieavpe~~-------~vk~~l~~~-l~~~--~~~IlasntS  108 (293)
T 1zej_A           77 VMEAVFEDL-------NTKVEVLRE-VERL--TNAPLCSNTS  108 (293)
T ss_dssp             EEECCCSCH-------HHHHHHHHH-HHTT--CCSCEEECCS
T ss_pred             EEEcCcCCH-------HHHHHHHHH-HhcC--CCCEEEEECC
Confidence            998876421       113456666 5554  8888877764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=88.66  E-value=5.5  Score=36.61  Aligned_cols=73  Identities=21%  Similarity=0.208  Sum_probs=50.9

Q ss_pred             CCCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcCC-Cce
Q 025141          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~~-~~f  176 (257)
                      ...++|+++|+|.-+. +...+..  ..+|..+|.|++-.+...+.+         ++..++++|+.+  .|.+.+ +..
T Consensus       233 ~~~~~v~I~GgG~ig~~lA~~L~~--~~~v~iIE~d~~r~~~la~~l---------~~~~Vi~GD~td~~~L~ee~i~~~  301 (461)
T 4g65_A          233 KPYRRIMIVGGGNIGASLAKRLEQ--TYSVKLIERNLQRAEKLSEEL---------ENTIVFCGDAADQELLTEENIDQV  301 (461)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHC---------TTSEEEESCTTCHHHHHHTTGGGC
T ss_pred             ccccEEEEEcchHHHHHHHHHhhh--cCceEEEecCHHHHHHHHHHC---------CCceEEeccccchhhHhhcCchhh
Confidence            3468999999876442 2222332  358999999999887666543         467899999966  555544 789


Q ss_pred             eEEEEcCC
Q 025141          177 DVIIGDLA  184 (257)
Q Consensus       177 DvIi~D~~  184 (257)
                      |+++.-..
T Consensus       302 D~~ia~T~  309 (461)
T 4g65_A          302 DVFIALTN  309 (461)
T ss_dssp             SEEEECCS
T ss_pred             cEEEEccc
Confidence            99987544

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=88.43  E-value=3.8  Score=30.74  Aligned_cols=67  Identities=25%  Similarity=0.307  Sum_probs=40.8

Q ss_pred             CCCeEEEEeccchHHHHHHHh---cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE-EEcchHHHHhcCCCcee
Q 025141          102 NPKTIFIMGGGEGSTAREILR---HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAELESRKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i-~~~Da~~~l~~~~~~fD  177 (257)
                      ..++|++||+|  .+++.+++   ..+. +|++++.+++-.+...+.+.          ..+ ...|..+.++    ..|
T Consensus        20 ~~~~v~iiG~G--~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~----------~~~~~~~~~~~~~~----~~D   82 (144)
T 3oj0_A           20 GGNKILLVGNG--MLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYE----------YEYVLINDIDSLIK----NND   82 (144)
T ss_dssp             CCCEEEEECCS--HHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHT----------CEEEECSCHHHHHH----TCS
T ss_pred             cCCEEEEECCC--HHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhC----------CceEeecCHHHHhc----CCC
Confidence            37899999985  44444443   2344 59999999887655333222          121 2345445443    489


Q ss_pred             EEEEcCCC
Q 025141          178 VIIGDLAD  185 (257)
Q Consensus       178 vIi~D~~~  185 (257)
                      +|+.-.+.
T Consensus        83 ivi~at~~   90 (144)
T 3oj0_A           83 VIITATSS   90 (144)
T ss_dssp             EEEECSCC
T ss_pred             EEEEeCCC
Confidence            99987654

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=88.38  E-value=1.8  Score=35.97  Aligned_cols=90  Identities=14%  Similarity=0.211  Sum_probs=53.5

Q ss_pred             CeEEEEeccchH--HHHHHHhcC--CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          104 KTIFIMGGGEGS--TAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ++|.+||+|.=+  +++.+++..  +..+|+++|.+++-.+..++.+..          + ...|..+.++    ..|+|
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~----------~-~~~~~~e~~~----~aDvV   67 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGL----------T-TTTDNNEVAK----NADIL   67 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCC----------E-ECSCHHHHHH----HCSEE
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCC----------E-EeCChHHHHH----hCCEE
Confidence            479999998433  455555531  124799999999987776543321          1 2234444443    47999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++-.+. .        ...+.++. +...|+|+.+++..
T Consensus        68 ilav~~-~--------~~~~v~~~-l~~~l~~~~~vvs~   96 (247)
T 3gt0_A           68 ILSIKP-D--------LYASIINE-IKEIIKNDAIIVTI   96 (247)
T ss_dssp             EECSCT-T--------THHHHC----CCSSCTTCEEEEC
T ss_pred             EEEeCH-H--------HHHHHHHH-HHhhcCCCCEEEEe
Confidence            987632 1        13455666 67778887776643

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=88.34  E-value=0.64  Score=40.42  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=25.0

Q ss_pred             CCCeEEEEeccc-hHHH-HHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GSTA-REILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~-~~l~~~~~~~~v~~VEid~  136 (257)
                      ..++||++|+|+ |+.. ..|++ .++.+++.+|-|.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~-aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTR-CGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHH-cCCCEEEEECCCc
Confidence            457999999985 4433 44444 5788999999886

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=88.33  E-value=4.2  Score=33.21  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=49.1

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch--------HHHHh
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA--------RAELE  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da--------~~~l~  170 (257)
                      +.+.||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...    ..+++.++..|.        .+.++
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~d~d~~~~~~~~~~~~   86 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAH-G-ASVVLLGRTEASLAEVSDQIKSA----GQPQPLIIALNLENATAQQYRELAA   86 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT----TSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-C-CEEEEEecCHHHHHHHHHHHHhc----CCCCceEEEeccccCCHHHHHHHHH
Confidence            46789998887553   34555554 3 58999999998877766655432    124566666554        12222


Q ss_pred             ---cCCCceeEEEEcCC
Q 025141          171 ---SRKESYDVIIGDLA  184 (257)
Q Consensus       171 ---~~~~~fDvIi~D~~  184 (257)
                         ..-++.|+++..+.
T Consensus        87 ~~~~~~g~id~lv~nAg  103 (247)
T 3i1j_A           87 RVEHEFGRLDGLLHNAS  103 (247)
T ss_dssp             HHHHHHSCCSEEEECCC
T ss_pred             HHHHhCCCCCEEEECCc
Confidence               12257899999875

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=88.28  E-value=0.63  Score=40.24  Aligned_cols=89  Identities=22%  Similarity=0.243  Sum_probs=57.0

Q ss_pred             eEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEE
Q 025141          105 TIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG  181 (257)
Q Consensus       105 ~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi~  181 (257)
                      +||++|+  |.|..+.++++..+. +|++++.+++-.+.+++. +.      +  ..+-..|. ..++. ..+.+|+|+-
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l-Ga------~--~vi~~~~~-~~~~~~~~~~~d~v~d  217 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL-GA------N--RILSRDEF-AESRPLEKQLWAGAID  217 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH-TC------S--EEEEGGGS-SCCCSSCCCCEEEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc-CC------C--EEEecCCH-HHHHhhcCCCccEEEE
Confidence            4999996  567788888887765 899999999988888873 21      1  01111111 11222 2357998764


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                       ..     +       .+.++. +.+.|+++|.++.-
T Consensus       218 -~~-----g-------~~~~~~-~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          218 -TV-----G-------DKVLAK-VLAQMNYGGCVAAC  240 (324)
T ss_dssp             -SS-----C-------HHHHHH-HHHTEEEEEEEEEC
T ss_pred             -CC-----C-------cHHHHH-HHHHHhcCCEEEEE
Confidence             32     1       124566 57799999998864

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=88.24  E-value=2.2  Score=35.51  Aligned_cols=76  Identities=18%  Similarity=0.201  Sum_probs=52.0

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---------
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---------  168 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---------  168 (257)
                      .+.+.||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.         
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~   77 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAE-G-FTVFAGRRNGEKLAPLVAEIEAA-----GGRIVARSLDARNEDEVTAFLNA   77 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHT-T-CEEEEEESSGGGGHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEECcCCCHHHHHHHHHH
Confidence            356789999988664   45555554 4 58999999988776666554322     35788888886432         


Q ss_pred             HhcCCCceeEEEEcCC
Q 025141          169 LESRKESYDVIIGDLA  184 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~  184 (257)
                      +.+. ++.|+++.++.
T Consensus        78 ~~~~-g~id~lv~nAg   92 (252)
T 3h7a_A           78 ADAH-APLEVTIFNVG   92 (252)
T ss_dssp             HHHH-SCEEEEEECCC
T ss_pred             HHhh-CCceEEEECCC
Confidence            2223 68999999875

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=88.19  E-value=2.3  Score=37.14  Aligned_cols=76  Identities=30%  Similarity=0.406  Sum_probs=49.0

Q ss_pred             CCCeEEEEeccchHHH----HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhcCCCc
Q 025141          102 NPKTIFIMGGGEGSTA----REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKES  175 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~----~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~~~~~  175 (257)
                      +.++||+.|+. |.+.    +++++.++..+|++++.++.-.+..++.+.       .++++++.+|.++.  +...-+.
T Consensus        20 ~~k~vlVTGat-G~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~-------~~~v~~~~~Dl~d~~~l~~~~~~   91 (344)
T 2gn4_A           20 DNQTILITGGT-GSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN-------DPRMRFFIGDVRDLERLNYALEG   91 (344)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC-------CTTEEEEECCTTCHHHHHHHTTT
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc-------CCCEEEEECCCCCHHHHHHHHhc
Confidence            46789999875 4444    444443243489999999876554443321       35889999998653  2222346


Q ss_pred             eeEEEEcCCC
Q 025141          176 YDVIIGDLAD  185 (257)
Q Consensus       176 fDvIi~D~~~  185 (257)
                      .|+||..+..
T Consensus        92 ~D~Vih~Aa~  101 (344)
T 2gn4_A           92 VDICIHAAAL  101 (344)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999998753

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=88.07  E-value=5.7  Score=32.73  Aligned_cols=77  Identities=17%  Similarity=0.196  Sum_probs=49.6

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch--H------HHHh
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA--R------AELE  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da--~------~~l~  170 (257)
                      +.|.||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+....    ..++.++..|.  .      +.++
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~   84 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARY-G-ATVILLGRNEEKLRQVASHINEET----GRQPQWFILDLLTCTSENCQQLAQ   84 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHHH----SCCCEEEECCTTTCCHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhhc----CCCceEEEEecccCCHHHHHHHHH
Confidence            46789999987653   45555554 4 589999999887776655543221    23667777776  1      1221


Q ss_pred             ---cCCCceeEEEEcCC
Q 025141          171 ---SRKESYDVIIGDLA  184 (257)
Q Consensus       171 ---~~~~~fDvIi~D~~  184 (257)
                         ...++.|+++.++.
T Consensus        85 ~~~~~~g~id~lv~nAg  101 (252)
T 3f1l_A           85 RIAVNYPRLDGVLHNAG  101 (252)
T ss_dssp             HHHHHCSCCSEEEECCC
T ss_pred             HHHHhCCCCCEEEECCc
Confidence               22357999999875

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=87.88  E-value=7.5  Score=34.08  Aligned_cols=112  Identities=15%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             cCCCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025141           99 HHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f  176 (257)
                      +...+.+|.+||+|.=+  ++..++...-..++..+|++++.++--..-+.... .+. +++++..+|...     -...
T Consensus         5 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~-~~~-~~~~i~~~~~~a-----~~~a   77 (326)
T 3vku_A            5 TDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL-PFT-SPKKIYSAEYSD-----AKDA   77 (326)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG-GGS-CCCEEEECCGGG-----GTTC
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh-hhc-CCcEEEECcHHH-----hcCC
Confidence            34567899999986422  23333443333589999999886653322221100 011 356666665322     2457


Q ss_pred             eEEEEcCCCCCCCCc-ccCCc--h----HHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGP-CYKLY--T----KSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p-~~~L~--t----~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+|++-+..|...+. ...|+  +    ++..+. +.+ ..|++++++-+
T Consensus        78 DiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~-i~~-~~p~a~ilvvt  125 (326)
T 3vku_A           78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDP-IVD-SGFNGIFLVAA  125 (326)
T ss_dssp             SEEEECCCCC----------------CHHHHHHH-HHT-TTCCSEEEECS
T ss_pred             CEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHH-HHh-cCCceEEEEcc
Confidence            999987653321111 11233  1    345555 343 57999877644

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=87.79  E-value=13  Score=32.20  Aligned_cols=109  Identities=14%  Similarity=0.271  Sum_probs=55.9

Q ss_pred             CCCeEEEEeccchHHH--HHHHhcCCCcEEEEEECCHHHHHH-HHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          102 NPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~-a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+.+|.+||+|.-+.+  ..++...-..++..+|++++.++. +...-...  .+...++++..+| .+-+    ..-|+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~--~~~~~~~~v~~~~-~~a~----~~aDv   77 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT--PYSPTTVRVKAGE-YSDC----HDADL   77 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG--GGSSSCCEEEECC-GGGG----TTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh--hhcCCCeEEEeCC-HHHh----CCCCE
Confidence            3568999999765543  233333323589999999865543 22211111  0112345555544 2222    45799


Q ss_pred             EEEcCCCCCCCCcc-cC--CchHHHHHHH---HcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPC-YK--LYTKSFYEFV---VKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~-~~--L~t~ef~~~~---~~~~L~pgGil~~~  218 (257)
                      |++-...|...+.. ..  ..+...++.+   +.+. +|++++++-
T Consensus        78 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~  122 (317)
T 3d0o_A           78 VVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVA  122 (317)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEEC
T ss_pred             EEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEe
Confidence            99987644321110 01  1122333331   2333 899998873

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=87.67  E-value=0.97  Score=40.18  Aligned_cols=34  Identities=21%  Similarity=0.481  Sum_probs=24.9

Q ss_pred             CCCeEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~  136 (257)
                      +.++||++|+|+ |+. +..+++ .++.+++.||-|.
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~-aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIA-WGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHH-TTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEecCCE
Confidence            368999999984 333 344444 6889999999875

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=87.56  E-value=1.9  Score=37.24  Aligned_cols=91  Identities=18%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             CCCCeEEEEe--ccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhcCCCcee
Q 025141          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~-~l~~~~~~fD  177 (257)
                      .+.++||++|  +|-|.++.++++..+. +|+++..+++ .+.+++. ..      +   .++..+-.+ +.+ .-..+|
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~-~~~~~~l-Ga------~---~~i~~~~~~~~~~-~~~g~D  217 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRN-HAFLKAL-GA------E---QCINYHEEDFLLA-ISTPVD  217 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHH-HHHHHHH-TC------S---EEEETTTSCHHHH-CCSCEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccch-HHHHHHc-CC------C---EEEeCCCcchhhh-hccCCC
Confidence            4568999997  4557778888887764 8888875444 6777763 11      1   111111111 222 225799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+-...     .       ..+ .. +.+.|+++|.++.-
T Consensus       218 ~v~d~~g-----~-------~~~-~~-~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          218 AVIDLVG-----G-------DVG-IQ-SIDCLKETGCIVSV  244 (321)
T ss_dssp             EEEESSC-----H-------HHH-HH-HGGGEEEEEEEEEC
T ss_pred             EEEECCC-----c-------HHH-HH-HHHhccCCCEEEEe
Confidence            9885321     1       122 55 57899999998864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=87.55  E-value=2.1  Score=36.48  Aligned_cols=103  Identities=16%  Similarity=0.216  Sum_probs=62.2

Q ss_pred             CCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cC-CCCC-------CCeEEEEcchH
Q 025141          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KE-AFSD-------PRLELVINDAR  166 (257)
Q Consensus       103 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~-~~~~-------~rv~i~~~Da~  166 (257)
                      -++|.+||+|.=+  ++..+++. + .+|+++|.+++.++.+++.+...      .. ....       .+++. ..|..
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~   80 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFH-G-FAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA   80 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH
Confidence            3689999998532  44555553 4 48999999999988877653110      00 0000       12222 34433


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       167 ~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +.+    ...|+||...+...       -...++++. +.+.++|+.+++.+..
T Consensus        81 ~~~----~~aDlVi~av~~~~-------~~~~~v~~~-l~~~~~~~~il~s~tS  122 (283)
T 4e12_A           81 QAV----KDADLVIEAVPESL-------DLKRDIYTK-LGELAPAKTIFATNSS  122 (283)
T ss_dssp             HHT----TTCSEEEECCCSCH-------HHHHHHHHH-HHHHSCTTCEEEECCS
T ss_pred             HHh----ccCCEEEEeccCcH-------HHHHHHHHH-HHhhCCCCcEEEECCC
Confidence            333    45799998875321       123567777 6888999888876653

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=87.46  E-value=0.097  Score=58.05  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=0.0

Q ss_pred             eEEEEeccchHHHHHHHhcCC-----CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          105 TIFIMGGGEGSTAREILRHKT-----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      +||+||.|+|..+..+++.-.     ..+.|..|+++...+.+++.|...       .++.-.-|..+.-......||+|
T Consensus      1243 ~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~-------di~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A         1243 KVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL-------HVTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp             EEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH-------TEEEECCCSSCCCC-----CCEE
T ss_pred             eEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc-------ccccccccccccccCCCCceeEE


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +....-+.....      .+.+.. +++.|+|||.+++
T Consensus      1316 ia~~vl~~t~~~------~~~l~~-~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A         1316 VCNCALATLGDP------AVAVGN-MAATLKEGGFLLL 1346 (2512)
T ss_dssp             EEECC---------------------------CCEEEE
T ss_pred             EEcccccccccH------HHHHHH-HHHhcCCCcEEEE

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=87.33  E-value=0.67  Score=41.18  Aligned_cols=52  Identities=15%  Similarity=0.176  Sum_probs=31.0

Q ss_pred             chhHHHHHHHHHhh--cCCCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025141           85 EFIYHESLVHPALL--HHPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus        85 ~~~y~e~l~~~~l~--~~~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~  136 (257)
                      ...|.+.+..+..-  ......+||++|+|+ |+-....+...++.+++.+|-|.
T Consensus        16 ~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~   70 (346)
T 1y8q_A           16 AAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ   70 (346)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            34677665432211  122467999999964 33333333345789999998763

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=87.32  E-value=3.5  Score=35.62  Aligned_cols=94  Identities=12%  Similarity=0.115  Sum_probs=53.8

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEE----EEcchHHHHhcCCCce
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLEL----VINDARAELESRKESY  176 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~i----~~~Da~~~l~~~~~~f  176 (257)
                      .+|++||+|.-+  ++..+.+. + .+|+.++.++ . +..++. +.....  ..+..++    ...|.    ....+.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~-g-~~V~~~~r~~-~-~~i~~~Gl~~~~~--~~g~~~~~~~~~~~~~----~~~~~~~   72 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT-G-HCVSVVSRSD-Y-ETVKAKGIRIRSA--TLGDYTFRPAAVVRSA----AELETKP   72 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT-T-CEEEEECSTT-H-HHHHHHCEEEEET--TTCCEEECCSCEESCG----GGCSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-C-CeEEEEeCCh-H-HHHHhCCcEEeec--CCCcEEEeeeeeECCH----HHcCCCC
Confidence            589999998654  34444443 3 4899999987 3 444432 211110  1122332    11232    1222479


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      |+|++-.....         ..+.++. ++..|+++.+++.
T Consensus        73 DlVilavK~~~---------~~~~l~~-l~~~l~~~t~Iv~  103 (320)
T 3i83_A           73 DCTLLCIKVVE---------GADRVGL-LRDAVAPDTGIVL  103 (320)
T ss_dssp             SEEEECCCCCT---------TCCHHHH-HTTSCCTTCEEEE
T ss_pred             CEEEEecCCCC---------hHHHHHH-HHhhcCCCCEEEE
Confidence            99999865321         2356777 7889999886664

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=86.94  E-value=1  Score=43.10  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=24.2

Q ss_pred             CCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 025141          103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID  135 (257)
Q Consensus       103 ~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid  135 (257)
                      .++||+||+|+ |+.....+...++.+++.||-|
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            57999999985 4333333444678999999988

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=86.87  E-value=2.2  Score=36.11  Aligned_cols=90  Identities=23%  Similarity=0.170  Sum_probs=54.7

Q ss_pred             CCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       103 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ..+|.+||+|.=+  ++..+.+.....+|+++|.+++..+.+++. ...     +    ....|..+.+    ...|+|+
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~~-----~----~~~~~~~~~~----~~aDvVi   71 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALER-GIV-----D----EATADFKVFA----ALADVII   71 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT-TSC-----S----EEESCTTTTG----GGCSEEE
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHc-CCc-----c----cccCCHHHhh----cCCCEEE
Confidence            3589999998533  445555542125899999999888766542 110     0    1122322222    3579999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCc-CCCCcEEE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPR-LNPEGIFV  216 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~-L~pgGil~  216 (257)
                      +-.+..         ...+.++. +... |+++.+++
T Consensus        72 lavp~~---------~~~~v~~~-l~~~~l~~~~ivi   98 (290)
T 3b1f_A           72 LAVPIK---------KTIDFIKI-LADLDLKEDVIIT   98 (290)
T ss_dssp             ECSCHH---------HHHHHHHH-HHTSCCCTTCEEE
T ss_pred             EcCCHH---------HHHHHHHH-HHhcCCCCCCEEE
Confidence            976521         12567777 6777 88877665

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=86.84  E-value=3.2  Score=35.86  Aligned_cols=78  Identities=22%  Similarity=0.364  Sum_probs=52.2

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~--  170 (257)
                      ..+.||+.|+++|.   +++.+++. + .+|.+++.+++-.+.+.+.+...+   ..+++.++..|..+.      ++  
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~-G-~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~   81 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQ-G-CKVAIADIRQDSIDKALATLEAEG---SGPEVMGVQLDVASREGFKMAADEV   81 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC---CCCeEEEEECCCCCHHHHHHHHHHH
Confidence            46789999987664   44555554 4 589999999988776666554321   234788888886432      21  


Q ss_pred             -cCCCceeEEEEcCC
Q 025141          171 -SRKESYDVIIGDLA  184 (257)
Q Consensus       171 -~~~~~fDvIi~D~~  184 (257)
                       ...++.|+++.++.
T Consensus        82 ~~~~g~id~lv~nAg   96 (319)
T 3ioy_A           82 EARFGPVSILCNNAG   96 (319)
T ss_dssp             HHHTCCEEEEEECCC
T ss_pred             HHhCCCCCEEEECCC
Confidence             22357899999885

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=86.74  E-value=8.8  Score=32.82  Aligned_cols=96  Identities=19%  Similarity=0.234  Sum_probs=51.1

Q ss_pred             cCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC
Q 025141           75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA  152 (257)
Q Consensus        75 dG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~  152 (257)
                      ||.+...+.|-.-+.+.+..  .....+.++||++|+|+-+  ++..+++ .+..+|+++..+++-.+...+.+...   
T Consensus       100 ~g~l~G~NTD~~G~~~~L~~--~~~~l~~k~vlvlGaGg~g~aia~~L~~-~G~~~v~v~~R~~~~a~~la~~~~~~---  173 (281)
T 3o8q_A          100 DGEILGDNTDGEGLVQDLLA--QQVLLKGATILLIGAGGAARGVLKPLLD-QQPASITVTNRTFAKAEQLAELVAAY---  173 (281)
T ss_dssp             TSCEEEECCHHHHHHHHHHH--TTCCCTTCEEEEECCSHHHHHHHHHHHT-TCCSEEEEEESSHHHHHHHHHHHGGG---
T ss_pred             CCcEEEEecHHHHHHHHHHH--hCCCccCCEEEEECchHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHhhcc---
Confidence            45554444443333444422  1123467899999986322  2333343 45569999999987655444433311   


Q ss_pred             CCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025141          153 FSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       153 ~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~  185 (257)
                         ..++...-      ......+|+||.-.+.
T Consensus       174 ---~~~~~~~~------~~l~~~aDiIInaTp~  197 (281)
T 3o8q_A          174 ---GEVKAQAF------EQLKQSYDVIINSTSA  197 (281)
T ss_dssp             ---SCEEEEEG------GGCCSCEEEEEECSCC
T ss_pred             ---CCeeEeeH------HHhcCCCCEEEEcCcC
Confidence               12333321      1112679999987654

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=86.50  E-value=1.5  Score=39.96  Aligned_cols=102  Identities=13%  Similarity=0.138  Sum_probs=59.3

Q ss_pred             CCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE----cch------HHHH
Q 025141          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDA------RAEL  169 (257)
Q Consensus       102 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~----~Da------~~~l  169 (257)
                      ..++||++|+  |.|.++.++++..+ .++++++.+++-.+.+++.-...--.+.++.+.+..    .|.      .+.+
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~G-a~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i  306 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGG-ANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRI  306 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHH
Confidence            4578999996  45667788888766 588888899999998877411000000111111000    111      1223


Q ss_pred             hc-C-CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          170 ES-R-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       170 ~~-~-~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++ . ...+|+|+-...             .+.++. +.+.|+++|.++.-
T Consensus       307 ~~~t~g~g~Dvvid~~G-------------~~~~~~-~~~~l~~~G~iv~~  343 (456)
T 3krt_A          307 RELTGGEDIDIVFEHPG-------------RETFGA-SVFVTRKGGTITTC  343 (456)
T ss_dssp             HHHHTSCCEEEEEECSC-------------HHHHHH-HHHHEEEEEEEEES
T ss_pred             HHHhCCCCCcEEEEcCC-------------chhHHH-HHHHhhCCcEEEEE
Confidence            22 2 357999875321             134555 56789999998864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=86.44  E-value=2.8  Score=31.89  Aligned_cols=98  Identities=10%  Similarity=0.104  Sum_probs=55.1

Q ss_pred             CCeEEEEeccchH--HHHHHHhcCCCcEEEEEECC-HHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhc-CCCce
Q 025141          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID-EEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELES-RKESY  176 (257)
Q Consensus       103 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid-~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~-~~~~f  176 (257)
                      .++|+++|+|.=+  +++.+.+. + .+|+++|.+ ++-.+..++.++        ..+.++.+|+.+  .++. .-+..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~-g-~~V~vid~~~~~~~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a   72 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQR-G-QNVTVISNLPEDDIKQLEQRLG--------DNADVIPGDSNDSSVLKKAGIDRC   72 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHC--------TTCEEEESCTTSHHHHHHHTTTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-C-CCEEEEECCChHHHHHHHHhhc--------CCCeEEEcCCCCHHHHHHcChhhC
Confidence            4679999875333  23334332 3 479999998 454444333221        246788888753  3433 23679


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      |+|++...+..         ....... ..+.+.|...++....
T Consensus        73 d~vi~~~~~d~---------~n~~~~~-~a~~~~~~~~ii~~~~  106 (153)
T 1id1_A           73 RAILALSDNDA---------DNAFVVL-SAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             SEEEECSSCHH---------HHHHHHH-HHHHHTSSSCEEEECS
T ss_pred             CEEEEecCChH---------HHHHHHH-HHHHHCCCCEEEEEEC
Confidence            99998764311         1122222 3456667776666543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=86.43  E-value=3.2  Score=34.08  Aligned_cols=76  Identities=22%  Similarity=0.290  Sum_probs=51.3

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~--  170 (257)
                      +.+.||+.|+++|.   +++++++. + .+|.+++.+++-.+...+.+...     .+++.++..|..+.      ++  
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   80 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALARE-G-AAVVVADINAEAAEAVAKQIVAD-----GGTAISVAVDVSDPESAKAMADRT   80 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-C-CEEEEEcCCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            56789999987653   45555554 3 58999999998877666554322     35778888887542      11  


Q ss_pred             -cCCCceeEEEEcCC
Q 025141          171 -SRKESYDVIIGDLA  184 (257)
Q Consensus       171 -~~~~~fDvIi~D~~  184 (257)
                       +.-++.|+++.++.
T Consensus        81 ~~~~g~id~li~~Ag   95 (253)
T 3qiv_A           81 LAEFGGIDYLVNNAA   95 (253)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence             11247899999874

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=86.29  E-value=2.6  Score=35.03  Aligned_cols=77  Identities=23%  Similarity=0.345  Sum_probs=51.9

Q ss_pred             CCCeEEEEec-cchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc
Q 025141          102 NPKTIFIMGG-GEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES  171 (257)
Q Consensus       102 ~~~~VL~IG~-G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~  171 (257)
                      +.+.||+.|+ |.|.   +++++++. + .+|++++.+++-.+...+.+...    ...++.++..|..+.      ++.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dl~~~~~v~~~~~~   94 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLE-G-ADVVISDYHERRLGETRDQLADL----GLGRVEAVVCDVTSTEAVDALITQ   94 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTT----CSSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHC-C-CEEEEecCCHHHHHHHHHHHHhc----CCCceEEEEeCCCCHHHHHHHHHH
Confidence            5688999998 4433   45666664 4 58999999998877666655322    235888998887442      211


Q ss_pred             ---CCCceeEEEEcCC
Q 025141          172 ---RKESYDVIIGDLA  184 (257)
Q Consensus       172 ---~~~~fDvIi~D~~  184 (257)
                         .-++.|++|..+.
T Consensus        95 ~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           95 TVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHhCCCcEEEECCC
Confidence               1257899999875

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=86.24  E-value=4.2  Score=33.22  Aligned_cols=76  Identities=12%  Similarity=0.188  Sum_probs=51.2

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------H---
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------L---  169 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l---  169 (257)
                      +.+.+|+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.      +   
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~-G-~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   76 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASK-G-ATVVGTATSQASAEKFENSMKEK-----GFKARGLVLNISDIESIQNFFAEI   76 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence            46789999987653   45566654 3 58999999988777665554322     35778888776432      2   


Q ss_pred             hcCCCceeEEEEcCC
Q 025141          170 ESRKESYDVIIGDLA  184 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~  184 (257)
                      ....++.|+++..+.
T Consensus        77 ~~~~~~id~li~~Ag   91 (247)
T 3lyl_A           77 KAENLAIDILVNNAG   91 (247)
T ss_dssp             HHTTCCCSEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence            223457999999875

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=86.21  E-value=3.2  Score=33.66  Aligned_cols=71  Identities=13%  Similarity=0.116  Sum_probs=46.9

Q ss_pred             CeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhcCCC
Q 025141          104 KTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELESRKE  174 (257)
Q Consensus       104 ~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~~~~~  174 (257)
                      |.||+.|+++|.   +++.+++. + .+|.+++.+++-++...+.+        ..++.++..|..+      .++...+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~-G-~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~v~~~~~~~~~   71 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAE-G-KATYLTGRSESKLSTVTNCL--------SNNVGYRARDLASHQEVEQLFEQLDS   71 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHT-T-CCEEEEESCHHHHHHHHHTC--------SSCCCEEECCTTCHHHHHHHHHSCSS
T ss_pred             CEEEEecCCchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHH--------hhccCeEeecCCCHHHHHHHHHHHhh
Confidence            468999987654   34555554 4 57999999998777665543        2456677766543      3344456


Q ss_pred             ceeEEEEcCC
Q 025141          175 SYDVIIGDLA  184 (257)
Q Consensus       175 ~fDvIi~D~~  184 (257)
                      .+|+++..+.
T Consensus        72 ~~d~lv~~Ag   81 (230)
T 3guy_A           72 IPSTVVHSAG   81 (230)
T ss_dssp             CCSEEEECCC
T ss_pred             cCCEEEEeCC
Confidence            6799999875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=85.93  E-value=4.8  Score=29.35  Aligned_cols=70  Identities=23%  Similarity=0.297  Sum_probs=41.7

Q ss_pred             CCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhc-CCCcee
Q 025141          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELES-RKESYD  177 (257)
Q Consensus       103 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~--~~l~~-~~~~fD  177 (257)
                      ..+|+++|+|.=+  ++..+.+ .+ .+|+++|.+++.++..++.+          .+.++.+|..  +.+.. .-+.+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~-~g-~~v~~~d~~~~~~~~~~~~~----------~~~~~~~d~~~~~~l~~~~~~~~d   71 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSE-KG-HDIVLIDIDKDICKKASAEI----------DALVINGDCTKIKTLEDAGIEDAD   71 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH-TT-CEEEEEESCHHHHHHHHHHC----------SSEEEESCTTSHHHHHHTTTTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-CC-CeEEEEECCHHHHHHHHHhc----------CcEEEEcCCCCHHHHHHcCcccCC
Confidence            3589999886533  2334444 33 58999999998776655321          2334555542  22332 235799


Q ss_pred             EEEEcCC
Q 025141          178 VIIGDLA  184 (257)
Q Consensus       178 vIi~D~~  184 (257)
                      +|++-.+
T Consensus        72 ~vi~~~~   78 (140)
T 1lss_A           72 MYIAVTG   78 (140)
T ss_dssp             EEEECCS
T ss_pred             EEEEeeC
Confidence            9998764

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=85.91  E-value=1.9  Score=40.61  Aligned_cols=61  Identities=8%  Similarity=0.052  Sum_probs=35.5

Q ss_pred             hhHHHHHHHHHhh--cCCCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHH-HHHHHHhhh
Q 025141           86 FIYHESLVHPALL--HHPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEE-VVEFCKSYL  146 (257)
Q Consensus        86 ~~y~e~l~~~~l~--~~~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~-vi~~a~~~~  146 (257)
                      ..|.+.+..+..-  ..-...+||++|+|+ |+-....+...++.+++.+|-|.. .-.+.|+++
T Consensus        13 ~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l   77 (531)
T 1tt5_A           13 QKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFF   77 (531)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTT
T ss_pred             HHhhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCcc
Confidence            3566655322211  112457999999964 443334344468899999998863 234455443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=85.80  E-value=4.3  Score=32.78  Aligned_cols=93  Identities=18%  Similarity=0.174  Sum_probs=54.7

Q ss_pred             eEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhc-CCCceeEE
Q 025141          105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELES-RKESYDVI  179 (257)
Q Consensus       105 ~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~-~~~~fDvI  179 (257)
                      +|+++|+|.=+  +++.+.+. + .+|+++|.|++.++...+.          ..+.++.+|+.+  .++. .-+..|+|
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~-g-~~v~vid~~~~~~~~l~~~----------~~~~~i~gd~~~~~~l~~a~i~~ad~v   69 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSR-K-YGVVIINKDRELCEEFAKK----------LKATIIHGDGSHKEILRDAEVSKNDVV   69 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHT-T-CCEEEEESCHHHHHHHHHH----------SSSEEEESCTTSHHHHHHHTCCTTCEE
T ss_pred             EEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHH----------cCCeEEEcCCCCHHHHHhcCcccCCEE
Confidence            68999975422  23344443 3 4899999999988765432          134677888754  2333 23678999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++...+..         ....... ..+.+.+...++...
T Consensus        70 i~~~~~d~---------~n~~~~~-~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           70 VILTPRDE---------VNLFIAQ-LVMKDFGVKRVVSLV   99 (218)
T ss_dssp             EECCSCHH---------HHHHHHH-HHHHTSCCCEEEECC
T ss_pred             EEecCCcH---------HHHHHHH-HHHHHcCCCeEEEEE
Confidence            98754321         1122333 344566666666544

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=85.73  E-value=8.5  Score=35.12  Aligned_cols=108  Identities=14%  Similarity=0.204  Sum_probs=60.4

Q ss_pred             CCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccCCC--------CCCCeEEEEcchHHHH
Q 025141          101 PNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF--------SDPRLELVINDARAEL  169 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~~--------~~~rv~i~~~Da~~~l  169 (257)
                      ....+.-+||+|-=++  +..+++. + -+|+++|+|++.++..++-- +.....+        ...++++- .|     
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~-G-~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~t-td-----   80 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKH-G-VDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVS-TT-----   80 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-SS-----
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEe-Cc-----
Confidence            3467889999986554  4455554 3 48999999999998877631 1100000        01233322 12     


Q ss_pred             hcCCCceeEEEEcCCCCCCCC--cccCCch-HHHHHHHHcCcCCCCcEEEEecC
Q 025141          170 ESRKESYDVIIGDLADPIEGG--PCYKLYT-KSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~~~~~~~--p~~~L~t-~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                         .+.-|+||+-.+.|....  -...+-. ....+. +.+.|++|-+++..+.
T Consensus        81 ---~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~-i~~~l~~g~iVV~~ST  130 (431)
T 3ojo_A           81 ---PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDS-ILPFLKKGNTIIVEST  130 (431)
T ss_dssp             ---CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHH-HGGGCCTTEEEEECSC
T ss_pred             ---hhhCCEEEEEeCCCccccccCCccHHHHHHHHHH-HHHhCCCCCEEEEecC
Confidence               135799999887654210  0012221 234456 6788999887776543

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=85.71  E-value=1.4  Score=40.53  Aligned_cols=35  Identities=17%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~  136 (257)
                      ...+||++|+|+ |+-....+...++.+++.+|-|.
T Consensus        39 ~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~   74 (434)
T 1tt5_B           39 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   74 (434)
T ss_dssp             HTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCB
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            346899999965 33333333346789999999763

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=85.70  E-value=6.5  Score=36.28  Aligned_cols=91  Identities=13%  Similarity=0.124  Sum_probs=54.1

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ...++|+++|+|. |......++..+ .+|+++|+||.-...+...           .+++  .+..+.+    ...|+|
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lrafG-a~Viv~d~dp~~a~~A~~~-----------G~~v--v~LeElL----~~ADIV  306 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGAG-ARVKVTEVDPICALQAAMD-----------GFEV--VTLDDAA----STADIV  306 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHT-----------TCEE--CCHHHHG----GGCSEE
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCC-CEEEEEeCCcchhhHHHhc-----------Ccee--ccHHHHH----hhCCEE
Confidence            4679999999986 333333344345 5999999999754333321           1121  2333444    357999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      +....       ..++.+.+.++.     +|||++++ |.+..
T Consensus       307 v~atg-------t~~lI~~e~l~~-----MK~GAILI-NvGRg  336 (464)
T 3n58_A          307 VTTTG-------NKDVITIDHMRK-----MKDMCIVG-NIGHF  336 (464)
T ss_dssp             EECCS-------SSSSBCHHHHHH-----SCTTEEEE-ECSSS
T ss_pred             EECCC-------CccccCHHHHhc-----CCCCeEEE-EcCCC
Confidence            86421       135777776664     67777665 76543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=85.63  E-value=12  Score=30.87  Aligned_cols=76  Identities=20%  Similarity=0.189  Sum_probs=51.6

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~--  170 (257)
                      +.|.+|+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.      ++  
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   82 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQ-G-ADLVLAARTVERLEDVAKQVTDT-----GRRALSVGTDITDDAQVAHLVDET   82 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHC-c-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            56889999987664   45556554 4 58999999988777666554322     35788888776432      21  


Q ss_pred             -cCCCceeEEEEcCC
Q 025141          171 -SRKESYDVIIGDLA  184 (257)
Q Consensus       171 -~~~~~fDvIi~D~~  184 (257)
                       +.-++.|+++.++.
T Consensus        83 ~~~~g~id~lv~nAg   97 (264)
T 3ucx_A           83 MKAYGRVDVVINNAF   97 (264)
T ss_dssp             HHHTSCCSEEEECCC
T ss_pred             HHHcCCCcEEEECCC
Confidence             12357999999874

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=85.63  E-value=8.8  Score=32.29  Aligned_cols=76  Identities=17%  Similarity=0.205  Sum_probs=52.4

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~--  170 (257)
                      +.|.+|+-|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...     ..++..+..|..+.      ++  
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~-G-a~Vv~~~~~~~~~~~~~~~i~~~-----g~~~~~~~~Dvt~~~~v~~~~~~~   78 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALN-D-SIVVAVELLEDRLNQIVQELRGM-----GKEVLGVKADVSKKKDVEEFVRRT   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            57889999987765   44555553 4 68999999999887776655432     25777888776432      22  


Q ss_pred             -cCCCceeEEEEcCC
Q 025141          171 -SRKESYDVIIGDLA  184 (257)
Q Consensus       171 -~~~~~fDvIi~D~~  184 (257)
                       +.-++.|+++.++-
T Consensus        79 ~~~~G~iDiLVNNAG   93 (254)
T 4fn4_A           79 FETYSRIDVLCNNAG   93 (254)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCc
Confidence             12367999999874

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=85.48  E-value=3.9  Score=35.74  Aligned_cols=58  Identities=14%  Similarity=0.212  Sum_probs=32.6

Q ss_pred             cCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECC
Q 025141           75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID  135 (257)
Q Consensus        75 dG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid  135 (257)
                      ||.+...+-|-.-+.+.+...  ......++||++|+|+-+  ++..+++ .+..+|+++..+
T Consensus       122 ~g~l~G~NTD~~Gf~~~L~~~--~~~l~gk~~lVlGAGGaaraia~~L~~-~G~~~v~v~nRt  181 (312)
T 3t4e_A          122 DGYLRGYNTDGTGHIRAIKES--GFDMRGKTMVLLGAGGAATAIGAQAAI-EGIKEIKLFNRK  181 (312)
T ss_dssp             TTEEEEECHHHHHHHHHHHHT--TCCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEECS
T ss_pred             CCEEEEeCCcHHHHHHHHHhc--CCCcCCCEEEEECcCHHHHHHHHHHHH-cCCCEEEEEECC
Confidence            455444444433333344321  123467899999986332  2334444 466799999998

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=85.41  E-value=2.3  Score=37.65  Aligned_cols=70  Identities=24%  Similarity=0.391  Sum_probs=39.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhcCCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~--~~l~~~~~~fD  177 (257)
                      .+..|||+||+|  .+++.+++. .....|+++|++++-++.+++..            +.+..|+.  +-+...-.+.|
T Consensus        14 g~~mkilvlGaG--~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~d~~d~~~l~~~~~~~D   79 (365)
T 3abi_A           14 GRHMKVLILGAG--NIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFA------------TPLKVDASNFDKLVEVMKEFE   79 (365)
T ss_dssp             --CCEEEEECCS--HHHHHHHHHHTTTSEEEEEESCHHHHHHHTTTS------------EEEECCTTCHHHHHHHHTTCS
T ss_pred             CCccEEEEECCC--HHHHHHHHHHhcCCCeEEEEcCHHHHHHHhccC------------CcEEEecCCHHHHHHHHhCCC
Confidence            456789999984  333332221 12348999999998887765432            22233332  12222224679


Q ss_pred             EEEEcCC
Q 025141          178 VIIGDLA  184 (257)
Q Consensus       178 vIi~D~~  184 (257)
                      +|++-.+
T Consensus        80 vVi~~~p   86 (365)
T 3abi_A           80 LVIGALP   86 (365)
T ss_dssp             EEEECCC
T ss_pred             EEEEecC
Confidence            9988654

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=85.21  E-value=2  Score=35.24  Aligned_cols=68  Identities=19%  Similarity=0.271  Sum_probs=43.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhcC-CCce
Q 025141          102 NPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESY  176 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~--~~l~~~-~~~f  176 (257)
                      ..++|+++|+|  .+++.+++.  .... |+++|.|++.++.++            ..+.++.+|+.  +.++.. -+..
T Consensus         8 ~~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~------------~~~~~i~gd~~~~~~l~~a~i~~a   72 (234)
T 2aef_A            8 KSRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR------------SGANFVHGDPTRVSDLEKANVRGA   72 (234)
T ss_dssp             --CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH------------TTCEEEESCTTCHHHHHHTTCTTC
T ss_pred             CCCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh------------cCCeEEEcCCCCHHHHHhcCcchh
Confidence            34689999985  444444432  1124 999999998776554            13577888875  344433 3678


Q ss_pred             eEEEEcCC
Q 025141          177 DVIIGDLA  184 (257)
Q Consensus       177 DvIi~D~~  184 (257)
                      |.|++-..
T Consensus        73 d~vi~~~~   80 (234)
T 2aef_A           73 RAVIVDLE   80 (234)
T ss_dssp             SEEEECCS
T ss_pred             cEEEEcCC
Confidence            99888654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=85.21  E-value=2.1  Score=34.76  Aligned_cols=71  Identities=11%  Similarity=0.117  Sum_probs=45.0

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCe-EEEEcchHHHHhcCCCce
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL-ELVINDARAELESRKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv-~i~~~Da~~~l~~~~~~f  176 (257)
                      -..++||+.|+.+|.   +++++++. + .+|+++..++.-.+...+           .++ +++..|..+.+...-+..
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~-G-~~V~~~~R~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~~~~~~   85 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNK-G-HEPVAMVRNEEQGPELRE-----------RGASDIVVANLEEDFSHAFASI   85 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESSGGGHHHHHH-----------TTCSEEEECCTTSCCGGGGTTC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhC-C-CeEEEEECChHHHHHHHh-----------CCCceEEEcccHHHHHHHHcCC
Confidence            356899999975433   34444443 3 589999998875543321           356 788888763333333578


Q ss_pred             eEEEEcCC
Q 025141          177 DVIIGDLA  184 (257)
Q Consensus       177 DvIi~D~~  184 (257)
                      |+|+..+.
T Consensus        86 D~vi~~ag   93 (236)
T 3e8x_A           86 DAVVFAAG   93 (236)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99998875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=85.13  E-value=10  Score=33.20  Aligned_cols=107  Identities=13%  Similarity=0.134  Sum_probs=57.0

Q ss_pred             CCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHH----HhhhhhccCCCCCCCeEEEEcchHHHHhcCCC
Q 025141          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFC----KSYLVVNKEAFSDPRLELVINDARAELESRKE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a----~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~  174 (257)
                      ..+.+|.+||+|.=+  ++..++...-..+++.+|++++.++..    ++-+++.     ..++++..+|... +    .
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~-----~~~v~i~~~~~~a-~----~   72 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFA-----PQPVKTSYGTYED-C----K   72 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGS-----SSCCEEEEECGGG-G----T
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccc-----cCCeEEEeCcHHH-h----C
Confidence            346789999986422  233344433235899999998866542    2212321     1345666555321 2    4


Q ss_pred             ceeEEEEcCCCCCCCCc-ccCCc--h----HHHHHHHHcCcCCCCcEEEEec
Q 025141          175 SYDVIIGDLADPIEGGP-CYKLY--T----KSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p-~~~L~--t----~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ..|+|++-+..|...+. ...|+  +    ++..+. +.+ ..|++++++-+
T Consensus        73 ~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~-I~~-~~p~a~vlvvt  122 (326)
T 3pqe_A           73 DADIVCICAGANQKPGETRLELVEKNLKIFKGIVSE-VMA-SGFDGIFLVAT  122 (326)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHH-HHH-TTCCSEEEECS
T ss_pred             CCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHH-HHH-hcCCeEEEEcC
Confidence            57999997654431111 11222  2    233333 233 57899877544

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=85.05  E-value=12  Score=32.85  Aligned_cols=109  Identities=16%  Similarity=0.156  Sum_probs=57.5

Q ss_pred             CCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHH-HHhhhhhccCCCCCCCeEEE-EcchHHHHhcCCCcee
Q 025141          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELV-INDARAELESRKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~-a~~~~~~~~~~~~~~rv~i~-~~Da~~~l~~~~~~fD  177 (257)
                      +..+|.+||+|.-+  ++..++...-..++..+|++++.++- +.+.-...  .+. ....++ .+|...     -...|
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~--~~~-~~~~i~~~~d~~~-----~~~aD   89 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGS--LFL-KTPKIVSSKDYSV-----TANSK   89 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG--GGC-SCCEEEECSSGGG-----GTTEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhh--hcc-CCCeEEEcCCHHH-----hCCCC
Confidence            45799999997433  34455554333589999999876543 22211110  011 122333 345321     25689


Q ss_pred             EEEEcCCCCCCCCc-ccCCch------HHHHHHHHcCcCCCCcEEEEecC
Q 025141          178 VIIGDLADPIEGGP-CYKLYT------KSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       178 vIi~D~~~~~~~~p-~~~L~t------~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +|++-+-.|...+. ...|+.      +++.+. +.+. .|++++++-.+
T Consensus        90 iVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~-i~~~-~p~a~vlvvtN  137 (331)
T 4aj2_A           90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPN-VVKY-SPQCKLLIVSN  137 (331)
T ss_dssp             EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHH-HHHH-CTTCEEEECSS
T ss_pred             EEEEccCCCCCCCccHHHHHHHHHHHHHHHHHH-HHHH-CCCeEEEEecC
Confidence            99887654331111 113432      244444 3444 89998876443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=84.96  E-value=6.9  Score=33.57  Aligned_cols=92  Identities=17%  Similarity=0.206  Sum_probs=53.1

Q ss_pred             CeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEE----EEcchHHHHhcCCCce
Q 025141          104 KTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLEL----VINDARAELESRKESY  176 (257)
Q Consensus       104 ~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~i----~~~Da~~~l~~~~~~f  176 (257)
                      .+|++||+|.-+.  +..+.+. + .+|+.++.++ . +..++. +....   ..+..++    ...|... +    +.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~-g-~~V~~~~r~~-~-~~i~~~g~~~~~---~~g~~~~~~~~~~~~~~~-~----~~~   70 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS-G-EDVHFLLRRD-Y-EAIAGNGLKVFS---INGDFTLPHVKGYRAPEE-I----GPM   70 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT-S-CCEEEECSTT-H-HHHHHTCEEEEE---TTCCEEESCCCEESCHHH-H----CCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-C-CeEEEEEcCc-H-HHHHhCCCEEEc---CCCeEEEeeceeecCHHH-c----CCC
Confidence            4799999986553  4455543 3 4799999887 3 444432 21111   1122221    1233322 2    469


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      |+|++-...         ....+.++. ++..|+|+.+++.
T Consensus        71 D~vilavk~---------~~~~~~l~~-l~~~l~~~~~iv~  101 (312)
T 3hn2_A           71 DLVLVGLKT---------FANSRYEEL-IRPLVEEGTQILT  101 (312)
T ss_dssp             SEEEECCCG---------GGGGGHHHH-HGGGCCTTCEEEE
T ss_pred             CEEEEecCC---------CCcHHHHHH-HHhhcCCCCEEEE
Confidence            999997542         123467788 7889999987664

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=84.92  E-value=1.6  Score=41.87  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=25.3

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~  136 (257)
                      ...+||+||+|+ |+.....+...++.+++.||-|.
T Consensus       325 ~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          325 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            357999999984 44333333346889999999985

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=84.88  E-value=1.2  Score=39.52  Aligned_cols=94  Identities=17%  Similarity=0.164  Sum_probs=57.7

Q ss_pred             CCCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      +..++|.+||+|.  +.+++.+.+. + .+|+++|.+++..+.+++. .          +. ...|..+.++......|+
T Consensus         6 ~~~~kIgIIG~G~mG~slA~~L~~~-G-~~V~~~dr~~~~~~~a~~~-G----------~~-~~~~~~e~~~~a~~~aDl   71 (341)
T 3ktd_A            6 DISRPVCILGLGLIGGSLLRDLHAA-N-HSVFGYNRSRSGAKSAVDE-G----------FD-VSADLEATLQRAAAEDAL   71 (341)
T ss_dssp             CCSSCEEEECCSHHHHHHHHHHHHT-T-CCEEEECSCHHHHHHHHHT-T----------CC-EESCHHHHHHHHHHTTCE
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHc-C----------Ce-eeCCHHHHHHhcccCCCE
Confidence            4557899999983  4456666654 3 4799999999988877652 1          11 134555554322224699


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      |++..+..         ...+.++. +... +|+. +++..+
T Consensus        72 VilavP~~---------~~~~vl~~-l~~~-~~~~-iv~Dv~  101 (341)
T 3ktd_A           72 IVLAVPMT---------AIDSLLDA-VHTH-APNN-GFTDVV  101 (341)
T ss_dssp             EEECSCHH---------HHHHHHHH-HHHH-CTTC-CEEECC
T ss_pred             EEEeCCHH---------HHHHHHHH-HHcc-CCCC-EEEEcC
Confidence            99876521         24566676 5554 6665 455543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=84.76  E-value=11  Score=31.90  Aligned_cols=76  Identities=16%  Similarity=0.191  Sum_probs=45.6

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCH--HHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDE--EVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~--~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~  170 (257)
                      +.|.||+.|+++|.   +++.+++. + .+|.+++.+.  .-.+...+.....     ..++.++..|..+.      ++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~-G-~~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~  120 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYARE-G-ADVAINYLPAEEEDAQQVKALIEEC-----GRKAVLLPGDLSDESFARSLVH  120 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEECCGGGHHHHHHHHHHHHHT-----TCCEEECCCCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEeCCcchhHHHHHHHHHHHc-----CCcEEEEEecCCCHHHHHHHHH
Confidence            46789999987654   44555554 3 5898888873  3333333332221     24677777776432      21


Q ss_pred             ---cCCCceeEEEEcCC
Q 025141          171 ---SRKESYDVIIGDLA  184 (257)
Q Consensus       171 ---~~~~~fDvIi~D~~  184 (257)
                         +.-++.|+++.++.
T Consensus       121 ~~~~~~g~iD~lv~nAg  137 (294)
T 3r3s_A          121 KAREALGGLDILALVAG  137 (294)
T ss_dssp             HHHHHHTCCCEEEECCC
T ss_pred             HHHHHcCCCCEEEECCC
Confidence               12257899999875

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=84.60  E-value=5.7  Score=33.13  Aligned_cols=76  Identities=17%  Similarity=0.280  Sum_probs=48.6

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~--  170 (257)
                      ..++||+.|+++|.   +++.+++. + .+|++++.++.-.+...+.+...     ..++.++..|..+.      ++  
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~  102 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKL-K-SKLVLWDINKHGLEETAAKCKGL-----GAKVHTFVVDCSNREDIYSSAKKV  102 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-C-CEEEEEEcCHHHHHHHHHHHHhc-----CCeEEEEEeeCCCHHHHHHHHHHH
Confidence            45789999876553   34444543 3 58999999987766554443321     24788888886432      11  


Q ss_pred             -cCCCceeEEEEcCC
Q 025141          171 -SRKESYDVIIGDLA  184 (257)
Q Consensus       171 -~~~~~fDvIi~D~~  184 (257)
                       ..-++.|+||..+.
T Consensus       103 ~~~~g~iD~li~~Ag  117 (272)
T 1yb1_A          103 KAEIGDVSILVNNAG  117 (272)
T ss_dssp             HHHTCCCSEEEECCC
T ss_pred             HHHCCCCcEEEECCC
Confidence             12257899999875

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=84.50  E-value=0.81  Score=40.62  Aligned_cols=34  Identities=21%  Similarity=0.442  Sum_probs=25.9

Q ss_pred             CCeEEEEeccchHHH--HHHHhcCCCcEEEEEECCH
Q 025141          103 PKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~  136 (257)
                      .|||++||+|.+++.  ..|.+..+..+|+.||-++
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            589999999988864  4455554446899999775

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=84.43  E-value=7.7  Score=30.80  Aligned_cols=68  Identities=15%  Similarity=0.175  Sum_probs=43.0

Q ss_pred             eEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          105 TIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       105 ~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +||+.|+.++.   +++++++. + .+|+++..++.-.+..           ..++++++.+|..+.-...-+..|+||.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~-g-~~V~~~~R~~~~~~~~-----------~~~~~~~~~~D~~d~~~~~~~~~d~vi~   68 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRR-G-HEVLAVVRDPQKAADR-----------LGATVATLVKEPLVLTEADLDSVDAVVD   68 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHH-----------TCTTSEEEECCGGGCCHHHHTTCSEEEE
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC-C-CEEEEEEecccccccc-----------cCCCceEEecccccccHhhcccCCEEEE
Confidence            68999875332   33444443 3 5899999987654321           1257888888876532211246899998


Q ss_pred             cCCC
Q 025141          182 DLAD  185 (257)
Q Consensus       182 D~~~  185 (257)
                      .+..
T Consensus        69 ~ag~   72 (224)
T 3h2s_A           69 ALSV   72 (224)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=84.26  E-value=4.8  Score=37.14  Aligned_cols=101  Identities=14%  Similarity=0.190  Sum_probs=59.6

Q ss_pred             CeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHH-HHHHhhhh-h-ccCCCC-------CCCeEEEEcchHHHHhc
Q 025141          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVV-EFCKSYLV-V-NKEAFS-------DPRLELVINDARAELES  171 (257)
Q Consensus       104 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi-~~a~~~~~-~-~~~~~~-------~~rv~i~~~Da~~~l~~  171 (257)
                      ++|.+||+|.  ++++..+++. + -+|+++|++++-. +..++.+. + ....+.       ..++++. .|. +-   
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~a-G-~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl-~a---  127 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLA-G-IETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDF-HK---  127 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCG-GG---
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-CeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCH-HH---
Confidence            6899999995  4456666664 4 4899999999811 11111221 1 000000       0234432 332 11   


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       172 ~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                       -...|+||...++.    +   -...++|+. +.+.++|+.+++.|+.
T Consensus       128 -l~~aDlVIeAVpe~----~---~vk~~v~~~-l~~~~~~~aIlasnTS  167 (460)
T 3k6j_A          128 -LSNCDLIVESVIED----M---KLKKELFAN-LENICKSTCIFGTNTS  167 (460)
T ss_dssp             -CTTCSEEEECCCSC----H---HHHHHHHHH-HHTTSCTTCEEEECCS
T ss_pred             -HccCCEEEEcCCCC----H---HHHHHHHHH-HHhhCCCCCEEEecCC
Confidence             24679999987642    1   123567888 7889999999987754

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=84.11  E-value=4.5  Score=34.54  Aligned_cols=77  Identities=22%  Similarity=0.289  Sum_probs=52.3

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh-
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~-  170 (257)
                      -+.+.||+.|+++|.   +++++++. + .+|.+++.+++-++.+.+.+...     ..++.++..|..+.      ++ 
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~~  101 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARR-G-ARLVLSDVDQPALEQAVNGLRGQ-----GFDAHGVVCDVRHLDEMVRLADE  101 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCceEEEEccCCCHHHHHHHHHH
Confidence            356889999987664   45555554 4 58999999998887766655422     35778888876442      11 


Q ss_pred             --cCCCceeEEEEcCC
Q 025141          171 --SRKESYDVIIGDLA  184 (257)
Q Consensus       171 --~~~~~fDvIi~D~~  184 (257)
                        +..++.|++|.++.
T Consensus       102 ~~~~~g~id~lvnnAg  117 (301)
T 3tjr_A          102 AFRLLGGVDVVFSNAG  117 (301)
T ss_dssp             HHHHHSSCSEEEECCC
T ss_pred             HHHhCCCCCEEEECCC
Confidence              11247899999875

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=84.11  E-value=14  Score=30.91  Aligned_cols=80  Identities=13%  Similarity=0.154  Sum_probs=52.1

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~  171 (257)
                      ...+.||+.|+++|.   +++.+++. + .+|.+++.+++-.+.+.+.+...+  ....++.++..|..+.      ++.
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~   84 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAA-G-ASVMIVGRNPDKLAGAVQELEALG--ANGGAIRYEPTDITNEDETARAVDA   84 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTTC--CSSCEEEEEECCTTSHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCHHHHHHHHHH
Confidence            356889999987654   45555554 4 589999999987776655544221  1223788888886442      211


Q ss_pred             ---CCCceeEEEEcCC
Q 025141          172 ---RKESYDVIIGDLA  184 (257)
Q Consensus       172 ---~~~~fDvIi~D~~  184 (257)
                         ..++.|+++.++.
T Consensus        85 ~~~~~g~id~lv~nAg  100 (281)
T 3svt_A           85 VTAWHGRLHGVVHCAG  100 (281)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence               1257899999875

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=83.88  E-value=8.8  Score=34.10  Aligned_cols=100  Identities=14%  Similarity=0.187  Sum_probs=56.9

Q ss_pred             CeEEEEeccchHH--HHHHHhcCCCcEEEEEE---CCHHHHHHHHhhhh--hccCCCCC------CCeEEEEcchHHHHh
Q 025141          104 KTIFIMGGGEGST--AREILRHKTVEKVVMCD---IDEEVVEFCKSYLV--VNKEAFSD------PRLELVINDARAELE  170 (257)
Q Consensus       104 ~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VE---id~~vi~~a~~~~~--~~~~~~~~------~rv~i~~~Da~~~l~  170 (257)
                      .+|.+||+|.-+.  +..+++..+ .+|++++   .+++.++.+.+.-.  .+......      .++.....|..+.+ 
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G-~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-   80 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDG-VEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAI-   80 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTT-EEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHH-
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHh-
Confidence            3799999986443  333333223 4899999   77777765332211  01000000      01222344544433 


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       171 ~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                         +..|+|++-.+..         ...+.++. ++..|+|+.+++..
T Consensus        81 ---~~aD~Vilav~~~---------~~~~v~~~-l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           81 ---SGADVVILTVPAF---------AHEGYFQA-MAPYVQDSALIVGL  115 (404)
T ss_dssp             ---TTCSEEEECSCGG---------GHHHHHHH-HTTTCCTTCEEEET
T ss_pred             ---CCCCEEEEeCchH---------HHHHHHHH-HHhhCCCCcEEEEc
Confidence               3589999976531         14678888 78899988877653

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=83.65  E-value=6.6  Score=34.27  Aligned_cols=58  Identities=21%  Similarity=0.218  Sum_probs=32.1

Q ss_pred             cCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECC
Q 025141           75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID  135 (257)
Q Consensus        75 dG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid  135 (257)
                      ||.+...+-|-.-+.+.+..  .....+.++||++|+|+-+  ++..+++ .+..+|+++..+
T Consensus       128 ~g~l~G~NTD~~Gf~~~L~~--~~~~l~gk~~lVlGaGG~g~aia~~L~~-~Ga~~V~i~nR~  187 (315)
T 3tnl_A          128 DGVLTGHITDGTGYMRALKE--AGHDIIGKKMTICGAGGAATAICIQAAL-DGVKEISIFNRK  187 (315)
T ss_dssp             TTEEEEECCHHHHHHHHHHH--TTCCCTTSEEEEECCSHHHHHHHHHHHH-TTCSEEEEEECS
T ss_pred             CCEEEEeCCCHHHHHHHHHH--cCCCccCCEEEEECCChHHHHHHHHHHH-CCCCEEEEEECC
Confidence            45444334443333334432  1123467899999986221  2334444 455689999998

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=83.54  E-value=2.5  Score=39.19  Aligned_cols=102  Identities=19%  Similarity=0.306  Sum_probs=62.7

Q ss_pred             CCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCC------------CCeEEEEcchHH
Q 025141          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSD------------PRLELVINDARA  167 (257)
Q Consensus       103 ~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~------------~rv~i~~~Da~~  167 (257)
                      -++|.+||+|.  ++++..+++. + -+|+++|.+++.++.+++..... ......            .+++.. .|. +
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~a-G-~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~   80 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASH-G-HQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDI-H   80 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT-T-CCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCG-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCH-H
Confidence            46899999985  3456666664 4 47999999999999887653211 000001            133332 332 1


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      -+    ...|+||...++..       -...+++++ +.+.++|+.+++.|..
T Consensus        81 ~~----~~aDlVIeAVpe~~-------~vk~~v~~~-l~~~~~~~~IlasntS  121 (483)
T 3mog_A           81 AL----AAADLVIEAASERL-------EVKKALFAQ-LAEVCPPQTLLTTNTS  121 (483)
T ss_dssp             GG----GGCSEEEECCCCCH-------HHHHHHHHH-HHHHSCTTCEEEECCS
T ss_pred             Hh----cCCCEEEEcCCCcH-------HHHHHHHHH-HHHhhccCcEEEecCC
Confidence            12    45799998875321       123567787 6888899988877653

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=83.52  E-value=8  Score=32.55  Aligned_cols=73  Identities=25%  Similarity=0.289  Sum_probs=49.8

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~  171 (257)
                      -+.+.||+.|+++|.   +++.+++. + .+|.+++.++.-.+.+.+.+        ..++.++..|..+.      ++.
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~-G-~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dl~d~~~v~~~~~~   83 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARR-G-ATVIMAVRDTRKGEAAARTM--------AGQVEVRELDLQDLSSVRRFADG   83 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHTTS--------SSEEEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHh--------cCCeeEEEcCCCCHHHHHHHHHh
Confidence            356889999987554   34555553 4 58999999988776665433        24778888886432      222


Q ss_pred             CCCceeEEEEcCC
Q 025141          172 RKESYDVIIGDLA  184 (257)
Q Consensus       172 ~~~~fDvIi~D~~  184 (257)
                      . ++.|+++.++.
T Consensus        84 ~-~~iD~lv~nAg   95 (291)
T 3rd5_A           84 V-SGADVLINNAG   95 (291)
T ss_dssp             C-CCEEEEEECCC
T ss_pred             c-CCCCEEEECCc
Confidence            2 57899999875

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=83.50  E-value=3.2  Score=36.83  Aligned_cols=34  Identities=15%  Similarity=0.316  Sum_probs=24.2

Q ss_pred             CCCeEEEEeccchH-H-HHHHHhcCCCcEEEEEECCH
Q 025141          102 NPKTIFIMGGGEGS-T-AREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       102 ~~~~VL~IG~G~G~-~-~~~l~~~~~~~~v~~VEid~  136 (257)
                      ..++||++|+|+-+ . +..|++ .++.+++.+|-|.
T Consensus       117 ~~~~VlvvG~GglGs~va~~La~-aGvg~i~lvD~D~  152 (353)
T 3h5n_A          117 KNAKVVILGCGGIGNHVSVILAT-SGIGEIILIDNDQ  152 (353)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEEECCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHh-CCCCeEEEECCCc
Confidence            46899999996433 2 334444 5788999999874

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=83.43  E-value=2.5  Score=35.61  Aligned_cols=78  Identities=14%  Similarity=0.184  Sum_probs=51.4

Q ss_pred             CCCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh
Q 025141          100 HPNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE  170 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~  170 (257)
                      .-+.+.+|+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     .+++.++..|..+.      ++
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~   95 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVA-G-ARILINGTDPSRVAQTVQEFRNV-----GHDAEAVAFDVTSESEIIEAFA   95 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHT-T-CEEEECCSCHHHHHHHHHHHHHT-----TCCEEECCCCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHHH
Confidence            3467889999887654   45555554 4 58999999988777665554322     35677777776432      11


Q ss_pred             ---cCCCceeEEEEcCC
Q 025141          171 ---SRKESYDVIIGDLA  184 (257)
Q Consensus       171 ---~~~~~fDvIi~D~~  184 (257)
                         ...++.|+++.++.
T Consensus        96 ~~~~~~g~iD~lv~nAg  112 (271)
T 4ibo_A           96 RLDEQGIDVDILVNNAG  112 (271)
T ss_dssp             HHHHHTCCCCEEEECCC
T ss_pred             HHHHHCCCCCEEEECCC
Confidence               22357999999875

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=83.38  E-value=3.2  Score=34.62  Aligned_cols=89  Identities=17%  Similarity=0.160  Sum_probs=53.5

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      .+|.+||+|.=+  ++..+.+. +...|+++|.+++..+...+.+.          +.. ..|..+.+    +..|+|++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~~~~~~~~~~~~~~g----------~~~-~~~~~~~~----~~~Dvvi~   74 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRK-GFRIVQVYSRTEESARELAQKVE----------AEY-TTDLAEVN----PYAKLYIV   74 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSHHHHHHHHHHTT----------CEE-ESCGGGSC----SCCSEEEE
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcC----------Cce-eCCHHHHh----cCCCEEEE
Confidence            579999997422  44555554 33348999999988776655332          111 22322222    35799988


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      -.++.       .  ..+.++. +.+.++++.+++-.
T Consensus        75 av~~~-------~--~~~v~~~-l~~~~~~~~ivv~~  101 (266)
T 3d1l_A           75 SLKDS-------A--FAELLQG-IVEGKREEALMVHT  101 (266)
T ss_dssp             CCCHH-------H--HHHHHHH-HHTTCCTTCEEEEC
T ss_pred             ecCHH-------H--HHHHHHH-HHhhcCCCcEEEEC
Confidence            76421       1  2566777 67778777766543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=83.33  E-value=5.3  Score=33.58  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=50.0

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~-  171 (257)
                      +.+.||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.      ++. 
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~   95 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAAR-G-IAVYGCARDAKNVSAAVDGLRAA-----GHDVDGSSCDVTSTDEVHAAVAAA   95 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHHH
Confidence            45789999987654   45555554 4 58999999988777666554322     35788888886432      211 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++.
T Consensus        96 ~~~~g~id~lv~nAg  110 (279)
T 3sju_A           96 VERFGPIGILVNSAG  110 (279)
T ss_dssp             HHHHCSCCEEEECCC
T ss_pred             HHHcCCCcEEEECCC
Confidence              2257899999875

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=83.12  E-value=4.3  Score=33.66  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=51.6

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh-
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~-  170 (257)
                      .+.+.+|+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.      ++ 
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~   82 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKA-G-ASVVVTDLKSEGAEAVAAAIRQA-----GGKAIGLECNVTDEQHREAVIKA   82 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHH-T-CEEEEEESSHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHH
Confidence            356789999887664   45555554 3 58999999998777666554422     35788888776442      21 


Q ss_pred             --cCCCceeEEEEcCC
Q 025141          171 --SRKESYDVIIGDLA  184 (257)
Q Consensus       171 --~~~~~fDvIi~D~~  184 (257)
                        +.-++.|+++.++.
T Consensus        83 ~~~~~g~id~lv~nAg   98 (256)
T 3gaf_A           83 ALDQFGKITVLVNNAG   98 (256)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence              11257899999875

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=83.10  E-value=1.6  Score=37.76  Aligned_cols=89  Identities=17%  Similarity=0.331  Sum_probs=54.6

Q ss_pred             eEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cch-HHHHhc-CCCceeEE
Q 025141          105 TIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDA-RAELES-RKESYDVI  179 (257)
Q Consensus       105 ~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da-~~~l~~-~~~~fDvI  179 (257)
                      +||++|+  |.|..+.++++..+ .+|++++.+++-.+.+++. ..      +   .++. .|. .+.++. ....+|+|
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~G-a~vi~~~~~~~~~~~~~~l-Ga------~---~v~~~~~~~~~~~~~~~~~~~d~v  221 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNREAADYLKQL-GA------S---EVISREDVYDGTLKALSKQQWQGA  221 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSSTHHHHHHH-TC------S---EEEEHHHHCSSCCCSSCCCCEEEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CC------c---EEEECCCchHHHHHHhhcCCccEE
Confidence            8999996  55666777777655 4799999988878888763 21      1   1111 110 011121 23469998


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +-...     .        +.+.. +.+.|+++|.++.-
T Consensus       222 id~~g-----~--------~~~~~-~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          222 VDPVG-----G--------KQLAS-LLSKIQYGGSVAVS  246 (330)
T ss_dssp             EESCC-----T--------HHHHH-HHTTEEEEEEEEEC
T ss_pred             EECCc-----H--------HHHHH-HHHhhcCCCEEEEE
Confidence            75431     1        13455 57889999998864

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=82.98  E-value=9.4  Score=31.56  Aligned_cols=77  Identities=17%  Similarity=0.196  Sum_probs=50.6

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~--  170 (257)
                      +.+.||+.|+++|.   +++++++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.      ++  
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~  100 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSL-G-ARVVLTARDVEKLRAVEREIVAA-----GGEAESHACDLSHSDAIAAFATGV  100 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHH
Confidence            45789998886553   34555553 4 58999999998877666555422     35778888886432      11  


Q ss_pred             -cCCCceeEEEEcCCC
Q 025141          171 -SRKESYDVIIGDLAD  185 (257)
Q Consensus       171 -~~~~~fDvIi~D~~~  185 (257)
                       ...++.|+++..+..
T Consensus       101 ~~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A          101 LAAHGRCDVLVNNAGV  116 (262)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence             122578999998753

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=82.91  E-value=7.4  Score=33.64  Aligned_cols=92  Identities=16%  Similarity=0.165  Sum_probs=56.8

Q ss_pred             CCeEEEEeccchHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcC-CCce
Q 025141          103 PKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESY  176 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~-~~~f  176 (257)
                      .++++++|+|  ..++.+++.   .+ . |+++|.|++.++ +++           ..+.++.+|+.+  .+++. -++.
T Consensus       115 ~~~viI~G~G--~~g~~l~~~L~~~g-~-v~vid~~~~~~~-~~~-----------~~~~~i~gd~~~~~~L~~a~i~~a  178 (336)
T 1lnq_A          115 SRHVVICGWS--ESTLECLRELRGSE-V-FVLAEDENVRKK-VLR-----------SGANFVHGDPTRVSDLEKANVRGA  178 (336)
T ss_dssp             -CEEEEESCC--HHHHHHHTTGGGSC-E-EEEESCGGGHHH-HHH-----------TTCEEEESCTTSHHHHHHTCSTTE
T ss_pred             cCCEEEECCc--HHHHHHHHHHHhCC-c-EEEEeCChhhhh-HHh-----------CCcEEEEeCCCCHHHHHhcChhhc
Confidence            4579999974  555555442   23 4 999999999888 653           256788898854  34443 4789


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      |.|++...+..     .   +.....  ..+.+.|+..++....
T Consensus       179 ~~vi~~~~~d~-----~---n~~~~~--~ar~~~~~~~iiar~~  212 (336)
T 1lnq_A          179 RAVIVDLESDS-----E---TIHCIL--GIRKIDESVRIIAEAE  212 (336)
T ss_dssp             EEEEECCSSHH-----H---HHHHHH--HHHTTCTTSEEEEECS
T ss_pred             cEEEEcCCccH-----H---HHHHHH--HHHHHCCCCeEEEEEC
Confidence            99998654311     1   112222  2456777766666543

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=82.91  E-value=6.9  Score=32.98  Aligned_cols=81  Identities=17%  Similarity=0.243  Sum_probs=49.2

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~-  171 (257)
                      +.++||+.|+++|.   +++++++. + .+|++++.+++-.+...+.+..........++.++..|..+.      ++. 
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   94 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLEL-G-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   94 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence            45789999986553   34455553 3 589999999877665544433210001235788888886432      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+||..+.
T Consensus        95 ~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           95 LDTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1246899999875

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=82.84  E-value=3.9  Score=33.89  Aligned_cols=76  Identities=24%  Similarity=0.318  Sum_probs=50.7

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~-  171 (257)
                      +.+.+|+.|+++|.   +++.+++. + .+|.+++.+++-.+.+.+.+..     ...++.++..|..+.      ++. 
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~   77 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKE-G-ARVVITGRTKEKLEEAKLEIEQ-----FPGQILTVQMDVRNTDDIQKMIEQI   77 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHCC-----STTCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCHHHHHHHHHHH
Confidence            45788998887653   44555554 4 5899999999887776655432     135788888886432      211 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++.
T Consensus        78 ~~~~g~id~lv~nAg   92 (257)
T 3imf_A           78 DEKFGRIDILINNAA   92 (257)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1257899999875

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=82.74  E-value=6.4  Score=33.41  Aligned_cols=75  Identities=9%  Similarity=0.072  Sum_probs=48.1

Q ss_pred             CCCeEEEEeccch-----HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh
Q 025141          102 NPKTIFIMGGGEG-----STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G-----~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~  170 (257)
                      +.|.||+.|+++|     .+++.+++. + .+|.+++.++...+.+++.....      +++.++..|..+.      ++
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~  101 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREA-G-AELAFTYQGDALKKRVEPLAEEL------GAFVAGHCDVADAASIDAVFE  101 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHT-T-CEEEEEECSHHHHHHHHHHHHHH------TCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHC-C-CEEEEEcCCHHHHHHHHHHHHhc------CCceEEECCCCCHHHHHHHHH
Confidence            5688999998744     245566654 4 58999999976655555443322      3567777776432      21


Q ss_pred             ---cCCCceeEEEEcCC
Q 025141          171 ---SRKESYDVIIGDLA  184 (257)
Q Consensus       171 ---~~~~~fDvIi~D~~  184 (257)
                         +.-++.|+++.++.
T Consensus       102 ~~~~~~g~iD~lVnnAG  118 (293)
T 3grk_A          102 TLEKKWGKLDFLVHAIG  118 (293)
T ss_dssp             HHHHHTSCCSEEEECCC
T ss_pred             HHHHhcCCCCEEEECCc
Confidence               22357999999875

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=82.73  E-value=6.1  Score=32.36  Aligned_cols=76  Identities=14%  Similarity=0.307  Sum_probs=47.8

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~-  171 (257)
                      +.+.||+.|+++|.   +++++++. + .+|.+++.++.-.+...+.+...     ..++.++..|..+.      ++. 
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   84 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEA-G-ARVIIADLDEAMATKAVEDLRME-----GHDVSSVVMDVTNTESVQNAVRSV   84 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence            56789999886553   34455553 3 58999999987665444433221     24788888886432      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        ..++.|+|+..+.
T Consensus        85 ~~~~~~id~vi~~Ag   99 (260)
T 3awd_A           85 HEQEGRVDILVACAG   99 (260)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1246899999875

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=82.69  E-value=15  Score=30.81  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=51.0

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~-  171 (257)
                      +.+.||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.      ++. 
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~   99 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAAD-G-VTVGALGRTRTEVEEVADEIVGA-----GGQAIALEADVSDELQMRNAVRDL   99 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHHHHTTT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            56789999987654   34555553 4 58999999988777666544322     35788888886442      211 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++.
T Consensus       100 ~~~~g~iD~lVnnAg  114 (283)
T 3v8b_A          100 VLKFGHLDIVVANAG  114 (283)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCEEEECCC
Confidence              2257999999875

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=82.68  E-value=6.1  Score=32.96  Aligned_cols=76  Identities=17%  Similarity=0.268  Sum_probs=48.7

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECC------------HHHHHHHHhhhhhccCCCCCCCeEEEEcchH
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDID------------EEVVEFCKSYLVVNKEAFSDPRLELVINDAR  166 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid------------~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~  166 (257)
                      ..+.||+.|+++|.   +++.+++. + .+|.+++.+            ++-++...+.+...     ..++.++..|..
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~   84 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAAD-G-ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI-----GSRIVARQADVR   84 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH-----TCCEEEEECCTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-C-CeEEEEecccccccccccccchHHHHHHHHHHHhc-----CCeEEEEeCCCC
Confidence            56889999987654   45555554 3 589999987            55555444433322     257888888864


Q ss_pred             HH------Hhc---CCCceeEEEEcCC
Q 025141          167 AE------LES---RKESYDVIIGDLA  184 (257)
Q Consensus       167 ~~------l~~---~~~~fDvIi~D~~  184 (257)
                      +.      ++.   .-++.|+++.++.
T Consensus        85 ~~~~v~~~~~~~~~~~g~id~lv~nAg  111 (278)
T 3sx2_A           85 DRESLSAALQAGLDELGRLDIVVANAG  111 (278)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            32      221   1257899999875

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=82.67  E-value=5.1  Score=33.12  Aligned_cols=80  Identities=13%  Similarity=0.161  Sum_probs=51.9

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh-
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~-  170 (257)
                      ...+.+|+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+.....  ...++.++..|..+.      ++ 
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~   80 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATD-G-YRVVLIARSKQNLEKVHDEIMRSNK--HVQEPIVLPLDITDCTKADTEIKD   80 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHH-T-CEEEEEESCHHHHHHHHHHHHHHCT--TSCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHhcc--ccCcceEEeccCCCHHHHHHHHHH
Confidence            356789999987664   45555654 3 5899999999887766655432210  125677888776442      21 


Q ss_pred             --cCCCceeEEEEcCC
Q 025141          171 --SRKESYDVIIGDLA  184 (257)
Q Consensus       171 --~~~~~fDvIi~D~~  184 (257)
                        ..-++.|+++.++.
T Consensus        81 ~~~~~g~iD~lvnnAg   96 (250)
T 3nyw_A           81 IHQKYGAVDILVNAAA   96 (250)
T ss_dssp             HHHHHCCEEEEEECCC
T ss_pred             HHHhcCCCCEEEECCC
Confidence              12257999999875

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=82.61  E-value=7.6  Score=32.90  Aligned_cols=97  Identities=15%  Similarity=0.091  Sum_probs=53.0

Q ss_pred             CCeEEEEeccch--HHHHHHHhcC----CCcEEEEEECCHHHHHHHHh-h-hhhccCCCCC---CCeEEEEcchHHHHhc
Q 025141          103 PKTIFIMGGGEG--STAREILRHK----TVEKVVMCDIDEEVVEFCKS-Y-LVVNKEAFSD---PRLELVINDARAELES  171 (257)
Q Consensus       103 ~~~VL~IG~G~G--~~~~~l~~~~----~~~~v~~VEid~~vi~~a~~-~-~~~~~~~~~~---~rv~i~~~Da~~~l~~  171 (257)
                      +.+|.+||+|.=  .++..+++.+    +..+|++++. ++.++..++ . +..... ..+   .+++. ..+. +.+  
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~-~~~~~~~~~~~-~~~~-~~~--   81 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTP-SRDFLARPTCV-TDNP-AEV--   81 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECS-SCEEEECCSEE-ESCH-HHH--
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeC-CCCeEEecceE-ecCc-ccc--
Confidence            358999999853  3445555430    2137999998 666665554 2 111100 000   01111 1221 222  


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       172 ~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                        +.+|+||+-.+..       .  ..+.++. ++..|+++.+++.
T Consensus        82 --~~~D~vil~vk~~-------~--~~~v~~~-i~~~l~~~~~iv~  115 (317)
T 2qyt_A           82 --GTVDYILFCTKDY-------D--MERGVAE-IRPMIGQNTKILP  115 (317)
T ss_dssp             --CCEEEEEECCSSS-------C--HHHHHHH-HGGGEEEEEEEEE
T ss_pred             --CCCCEEEEecCcc-------c--HHHHHHH-HHhhcCCCCEEEE
Confidence              4799999986532       1  3677787 6888888776654

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=82.56  E-value=4.3  Score=33.78  Aligned_cols=78  Identities=15%  Similarity=0.201  Sum_probs=51.6

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh-
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~-  170 (257)
                      .+.|.||+.|+++|.   +++.+++. + .+|.+++.+++-.+.+.+.+...    ...++.++..|..+.      ++ 
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dv~~~~~v~~~~~~   81 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARA-G-ANVAVAGRSTADIDACVADLDQL----GSGKVIGVQTDVSDRAQCDALAGR   81 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTT----SSSCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhh----CCCcEEEEEcCCCCHHHHHHHHHH
Confidence            356889998887654   44555554 4 58999999998877666554322    125788888887442      11 


Q ss_pred             --cCCCceeEEEEcCC
Q 025141          171 --SRKESYDVIIGDLA  184 (257)
Q Consensus       171 --~~~~~fDvIi~D~~  184 (257)
                        +.-++.|+++.++.
T Consensus        82 ~~~~~g~id~lvnnAg   97 (262)
T 3pk0_A           82 AVEEFGGIDVVCANAG   97 (262)
T ss_dssp             HHHHHSCCSEEEECCC
T ss_pred             HHHHhCCCCEEEECCC
Confidence              11247999999875

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=82.49  E-value=1.4  Score=39.90  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=36.1

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhc-------CCCcEEEEEECCHHHHHHHHhhh
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCDIDEEVVEFCKSYL  146 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~-------~~~~~v~~VEid~~vi~~a~~~~  146 (257)
                      .|.+-+|+++|.|.|.++.-+++.       ....++..||++|...+.=++.+
T Consensus        78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L  131 (387)
T 1zkd_A           78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  131 (387)
T ss_dssp             CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence            455568999999999998877652       12348999999999988666654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=82.33  E-value=7.4  Score=31.76  Aligned_cols=73  Identities=18%  Similarity=0.259  Sum_probs=48.7

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~~  171 (257)
                      .+.++||+.|+++|.   +++.+++. + .+|.+++.+++-++...+.+.        .++.++..|..+      .++.
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~   81 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKL-G-SKVIISGSNEEKLKSLGNALK--------DNYTIEVCNLANKEECSNLISK   81 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHC--------SSEEEEECCTTSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-C-CEEEEEcCCHHHHHHHHHHhc--------cCccEEEcCCCCHHHHHHHHHh
Confidence            456889999987654   44555554 3 589999999887766554331        367777777643      2222


Q ss_pred             CCCceeEEEEcCC
Q 025141          172 RKESYDVIIGDLA  184 (257)
Q Consensus       172 ~~~~fDvIi~D~~  184 (257)
                       ..+.|+++..+.
T Consensus        82 -~~~id~li~~Ag   93 (249)
T 3f9i_A           82 -TSNLDILVCNAG   93 (249)
T ss_dssp             -CSCCSEEEECCC
T ss_pred             -cCCCCEEEECCC
Confidence             257999999875

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=82.19  E-value=6.9  Score=34.02  Aligned_cols=75  Identities=11%  Similarity=0.122  Sum_probs=47.2

Q ss_pred             cCCCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025141           99 HHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f  176 (257)
                      ..++.+++++||+|.=+  .++.+....+..+|.+++.+ ..-+.++++-...+     -++...  |..+.++    ..
T Consensus       117 a~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g-----~~~~~~--~~~eav~----~a  184 (313)
T 3hdj_A          117 ARPRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCG-----VPARMA--APADIAA----QA  184 (313)
T ss_dssp             SCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHT-----SCEEEC--CHHHHHH----HC
T ss_pred             ccCCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcC-----CeEEEe--CHHHHHh----hC
Confidence            45678999999998533  33444443456899999999 55555555322111     123322  7766664    58


Q ss_pred             eEEEEcCCC
Q 025141          177 DVIIGDLAD  185 (257)
Q Consensus       177 DvIi~D~~~  185 (257)
                      |+|++-.+.
T Consensus       185 DIVi~aT~s  193 (313)
T 3hdj_A          185 DIVVTATRS  193 (313)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEccCC
Confidence            999987664

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=82.07  E-value=8.5  Score=31.77  Aligned_cols=74  Identities=22%  Similarity=0.317  Sum_probs=48.6

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh-
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~-  170 (257)
                      .+.+.||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+        .+++.++..|..+.      ++ 
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~v~~~~~~   75 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVRE-G-ATVAIADIDIERARQAAAEI--------GPAAYAVQMDVTRQDSIDAAIAA   75 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHH--------CTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHh--------CCCceEEEeeCCCHHHHHHHHHH
Confidence            356889999987653   45555554 3 58999999988766554433        13567777776432      21 


Q ss_pred             --cCCCceeEEEEcCC
Q 025141          171 --SRKESYDVIIGDLA  184 (257)
Q Consensus       171 --~~~~~fDvIi~D~~  184 (257)
                        +.-++.|+++..+.
T Consensus        76 ~~~~~g~id~lv~~Ag   91 (259)
T 4e6p_A           76 TVEHAGGLDILVNNAA   91 (259)
T ss_dssp             HHHHSSSCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence              12357999999875

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=82.06  E-value=2.9  Score=38.90  Aligned_cols=75  Identities=17%  Similarity=0.197  Sum_probs=44.7

Q ss_pred             CCeEEEEeccc-hHHH---HHHHhcC--CCcEEEEEECCHHHHHHHHhhhhh--ccCCCCCCCeEEEE-cchHHHHhcCC
Q 025141          103 PKTIFIMGGGE-GSTA---REILRHK--TVEKVVMCDIDEEVVEFCKSYLVV--NKEAFSDPRLELVI-NDARAELESRK  173 (257)
Q Consensus       103 ~~~VL~IG~G~-G~~~---~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~--~~~~~~~~rv~i~~-~Da~~~l~~~~  173 (257)
                      ..+|.+||+|+ |...   ..+++..  ...+|+.+|++++.++.+......  ...   ....++.. .|..+-+    
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~---~~~~~I~~ttD~~eal----   75 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEV---GADLKFEKTMNLDDVI----   75 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHT---TCCCEEEEESCHHHHH----
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccC---CCCcEEEEECCHHHHh----
Confidence            35899999999 5332   2444321  136899999999987775554321  111   11334443 5654444    


Q ss_pred             CceeEEEEcCC
Q 025141          174 ESYDVIIGDLA  184 (257)
Q Consensus       174 ~~fDvIi~D~~  184 (257)
                      ..-|+|++...
T Consensus        76 ~dAD~VIiaag   86 (480)
T 1obb_A           76 IDADFVINTAM   86 (480)
T ss_dssp             TTCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            34699998874

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=81.90  E-value=9.2  Score=34.00  Aligned_cols=118  Identities=8%  Similarity=0.117  Sum_probs=71.6

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ...+||+|+-+-|.++..++.+    .++.+.=+-..-...+.++..++  +...++++...     ++.....||+|++
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~----~~~~~~ds~~~~~~~~~n~~~~~--~~~~~~~~~~~-----~~~~~~~~~~v~~  106 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH----KPYSIGDSYISELATRENLRLNG--IDESSVKFLDS-----TADYPQQPGVVLI  106 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG----CCEEEESCHHHHHHHHHHHHHTT--CCGGGSEEEET-----TSCCCSSCSEEEE
T ss_pred             CCCCEEEECCCCCHHHHhhccC----CceEEEhHHHHHHHHHHHHHHcC--CCccceEeccc-----ccccccCCCEEEE
Confidence            3468999999999999888764    23445323333345666666543  23344665433     2344678999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCc
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC  244 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~  244 (257)
                      -.+...      .. ...-++. +...|+|++.+++-...      .....++.+.|.+.+..
T Consensus       107 ~lpk~~------~~-l~~~L~~-l~~~l~~~~~i~~~g~~------~~~~~~~~~~l~~~~~~  155 (375)
T 4dcm_A          107 KVPKTL------AL-LEQQLRA-LRKVVTSDTRIIAGAKA------RDIHTSTLELFEKVLGP  155 (375)
T ss_dssp             ECCSCH------HH-HHHHHHH-HHTTCCTTSEEEEEEEG------GGCCHHHHHHHHHHTCC
T ss_pred             EcCCCH------HH-HHHHHHH-HHhhCCCCCEEEEEecc------cchHHHHHHHHHhhcCc
Confidence            876321      11 2455666 68899999988764321      11224555666665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	257
d2b2ca1	312	c.66.1.17 (A:3-314) Spermidine synthase {Caenorhab	6e-68
d1inla_	295	c.66.1.17 (A:) Spermidine synthase {Thermotoga mar	7e-63
d2o07a1	285	c.66.1.17 (A:16-300) Spermidine synthase {Human (H	5e-62
d1uira_	312	c.66.1.17 (A:) Spermidine synthase {Thermus thermo	1e-61
d1iy9a_	274	c.66.1.17 (A:) Spermidine synthase {Bacillus subti	2e-60
d1xj5a_	290	c.66.1.17 (A:) Spermidine synthase {Thale cress (A	7e-59
d1mjfa_	276	c.66.1.17 (A:) Putative spermidine synthetase PF01	8e-53

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 312

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  210 bits (535), Expect = 6e-68
 Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 5/217 (2%)

Query: 39  NLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALL 98
              +S  +  +L   +++YQD+ + ++  +G  LV+DG +Q+ E DEF Y E L H  + 
Sbjct: 43  GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMF 102

Query: 99  HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL 158
            HP+PK + I+GGG+G   RE+L+H++VEKV MC+IDE V++  K +L      FS P+L
Sbjct: 103 AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL 162

Query: 159 ELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218
           +L   D    L++ K  +DVII D +DP+  GP   L+ +S+YE +++  L  +GI  +Q
Sbjct: 163 DLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYE-LLRDALKEDGILSSQ 219

Query: 219 AGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF 255
                ++ H  + + +    R++F     A     ++
Sbjct: 220 GE--SVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTY 254

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} Length = 295

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

 Score =  197 bits (501), Expect = 7e-63
 Identities = 73/230 (31%), Positives = 114/230 (49%), Gaps = 5/230 (2%)

Query: 27  RKSCWYEEEIE-ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
           R+  WY E     N+     +N ++++G++  Q I + +    G    +DG   + E DE
Sbjct: 13  RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDE 72

Query: 86  FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
           F+YHE L H  +  HPNPK + I+GGG+G T RE+L+H +VEK ++C++D  V+E  + Y
Sbjct: 73  FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY 132

Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
           L      F DPR E+VI +    +   K  +DVII D  DP  G     L+T+ FY+   
Sbjct: 133 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGG-HLFTEEFYQACY 191

Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF 255
                 +G+F  +      F     F   Y  + +VF      L    ++
Sbjct: 192 DAL-KEDGVFSAETE--DPFYDIGWFKLAYRRISKVFPITRVYLGFMTTY 238

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  194 bits (494), Expect = 5e-62
 Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 31  WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E          S  +  +LH   +RYQDI +  +K +G  LV+DG +Q  E DEF Y
Sbjct: 5   WFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSY 64

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
            E + +  L  HPNP+ + I+GGG+G   RE+++H +VE VV C+IDE+V++  K +L  
Sbjct: 65  QEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPG 124

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
               +S  +L L + D    ++  ++++DVII D +DP+  GP   L+ +S+Y+  +K  
Sbjct: 125 MAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM--GPAESLFKESYYQL-MKTA 181

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF 255
           L  +G+   Q      + H ++   +    + +F     A  +  ++
Sbjct: 182 LKEDGVLCCQGE--CQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTY 226

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} Length = 312

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

 Score =  194 bits (494), Expect = 1e-61
 Identities = 100/229 (43%), Positives = 140/229 (61%), Gaps = 4/229 (1%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           ++ E +         +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE
Sbjct: 6   YFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHE 65

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VN 149
           +LVHPA+L HP PK + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   +
Sbjct: 66  TLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWH 125

Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPR 208
           + AF DPR  LVI+DARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  
Sbjct: 126 QGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAH 184

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFFC 257
           LNP G+   Q G   + +H  V   ++ T+R+ F+           FF 
Sbjct: 185 LNPGGVMGMQTGMI-LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFL 232

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Length = 274

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

 Score =  189 bits (482), Expect = 2e-60
 Identities = 72/227 (31%), Positives = 126/227 (55%), Gaps = 5/227 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           WY E+  +N   +  +N  LHT +T +Q + +++T+ FG  L +DG + ++E DEF+YHE
Sbjct: 4   WYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHE 63

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            + H  L  HPNP+ + ++GGG+G   REIL+H +V+K  + DID +V+E+ K +L    
Sbjct: 64  MVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA 123

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
               DPR+++ ++D    +   +  YDVI+ D  +P+  GP   L+TK FY   +   L 
Sbjct: 124 GKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAG-IAKALK 180

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFFC 257
            +GIFV Q      +   E+ + +   ++++F        +  ++  
Sbjct: 181 EDGIFVAQTD--NPWFTPELITNVQRDVKEIFPITKLYTANIPTYPS 225

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 290

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  186 bits (473), Expect = 7e-59
 Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 9/231 (3%)

Query: 31  WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E          S  +  +L  G++ YQD+ +  +  +GK LV+DG +Q  E DE  Y
Sbjct: 7   WFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAY 66

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
            E + H  L   PNPK + ++GGG+G   RE+ RH ++E++ MC+ID+ VV+  K +   
Sbjct: 67  QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD 126

Query: 149 NKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP 207
               + DPR+ LVI D  A L++  + SYD +I D +DPI  GP  +L+ K F++ V + 
Sbjct: 127 VAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPI--GPAKELFEKPFFQSVAR- 183

Query: 208 RLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALFSSYSFFC 257
            L P G+  TQA    ++ H ++   I +  R++       A  S  ++  
Sbjct: 184 ALRPGGVVCTQAE--SLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPS 232

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  170 bits (432), Expect = 8e-53
 Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 13/230 (5%)

Query: 32  YEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHES 91
           + E        +F +   ++   ++YQ I + +T+ FG+ L +DG +Q   + E  YHE 
Sbjct: 2   FIEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEP 61

Query: 92  LVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE 151
           LVHPA+L HP PK + ++GGG+G T RE+L+H  V++V+M +IDE+V+   K  + ++  
Sbjct: 62  LVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNG 120

Query: 152 AF------SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
                      + +L I D    ++     +DVII D  DP+   P   L+++ FY + V
Sbjct: 121 LLEAMLNGKHEKAKLTIGDGFEFIK-NNRGFDVIIADSTDPVG--PAKVLFSEEFYRY-V 176

Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF 255
              LN  GI+VTQAG   ++  T+     Y  +++VF       F    +
Sbjct: 177 YDALNNPGIYVTQAGS--VYLFTDELISAYKEMKKVFDRVYYYSFPVIGY 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	100.0
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	100.0
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	100.0
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	100.0
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	100.0
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	100.0
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	100.0
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.6
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.58
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.54
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.53
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.5
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.5
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.5
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.49
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.49
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.48
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.48
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.48
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.47
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.46
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.46
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.45
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.43
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.43
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.42
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.42
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.4
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.39
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.39
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.38
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.38
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.38
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.38
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.38
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.38
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.37
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.36
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.34
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.32
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.32
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.32
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.31
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.3
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.29
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.29
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.28
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.28
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.28
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.27
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.27
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.26
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.25
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.24
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.24
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.24
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.21
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.21
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.19
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.18
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.18
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.17
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.16
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.15
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.15
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.15
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.14
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.11
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.09
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.08
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.08
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.01
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.87
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.86
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.8
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.77
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.63
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.63
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.57
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.52
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.43
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.34
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.31
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.29
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.28
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.27
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.22
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.14
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.13
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.12
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.07
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.05
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.02
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.0
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.98
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.97
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.93
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.85
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.79
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.61
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.6
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.54
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.27
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.24
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.23
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.2
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.01
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.92
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.9
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.88
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.85
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.61
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.55
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.54
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.44
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.41
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.09
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.94
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.94
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.91
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.86
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	95.79
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.74
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.64
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.42
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.19
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.19
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.04
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.98
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.77
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.71
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.64
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.59
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.52
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.42
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.22
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.12
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.07
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.06
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.88
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.82
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.75
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.65
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.62
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.4
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.1
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.97
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.53
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	91.87
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.75
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	91.65
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	91.34
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.0
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.83
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	90.63
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	90.6
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	90.45
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	90.24
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	89.86
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	89.69
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	89.41
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	89.19
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	89.14
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.08
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.96
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	88.8
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	88.47
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	88.29
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	87.33
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	87.21
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	87.11
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.01
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	86.7
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	86.63
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	86.32
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	86.15
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	85.77
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	85.73
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.69
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.59
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	85.57
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	85.51
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	85.48
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	85.17
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	85.01
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	84.97
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	84.68
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	84.67
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	84.64
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	84.45
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	84.38
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	84.22
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.03
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	83.7
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	83.49
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	83.41
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	83.37
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	83.25
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	83.22
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	82.95
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	82.78
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	82.45
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	82.33
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	82.23
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	81.91
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	81.64
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	81.62
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	81.47
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	81.27
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	81.04
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	80.97
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	80.94
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	80.75
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	80.63
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	80.62
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	80.49
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	80.07

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.1e-50  Score=355.16  Aligned_cols=225  Identities=33%  Similarity=0.607  Sum_probs=201.4

Q ss_pred             ccccCeEEeeec-cccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCC
Q 025141           26 YRKSCWYEEEIE-ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPK  104 (257)
Q Consensus        26 ~~~~~w~~~~~~-~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~  104 (257)
                      .+...|+.|..+ ++.+.++.++++|++.+|+||+|+|++++.+|++|+|||.+|+++.|++.|||+|+|+|++.+++|+
T Consensus        12 ~~~~~w~~e~~~~~~~~~~~~v~~~l~~~~S~yQ~i~i~~s~~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~~~~pk   91 (295)
T d1inla_          12 PRQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPK   91 (295)
T ss_dssp             CCSSEEEEEECTTSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCC
T ss_pred             CCCcEEEEecccCCCceEEEEEEEEEEecCCCCcEEEEEEcCCcceEEEECCEEEEecCchhhhhhhhcchhHhhCCCCc
Confidence            345789999876 6899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~  184 (257)
                      +||+||+|+|+++++++++++..+|++|||||+|+++|++||+.+...+.+||++++++||++|++..+++||+|++|++
T Consensus        92 ~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~  171 (295)
T d1inla_          92 KVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDST  171 (295)
T ss_dssp             EEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC-
T ss_pred             eEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCC
Confidence            99999999999999999998888999999999999999999987655678999999999999999998899999999999


Q ss_pred             CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCcc
Q 025141          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYS  254 (257)
Q Consensus       185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~  254 (257)
                      +|.. .|...|+|.|||+. ++++|+|||++++|.++|  +.+.+.++.+.++++++||++.+|...-++
T Consensus       172 dp~~-~~~~~L~t~efy~~-~~~~L~~~Gi~v~q~~sp--~~~~~~~~~i~~tl~~vF~~v~~y~~~vPt  237 (295)
T d1inla_         172 DPTA-GQGGHLFTEEFYQA-CYDALKEDGVFSAETEDP--FYDIGWFKLAYRRISKVFPITRVYLGFMTT  237 (295)
T ss_dssp             ----------CCSHHHHHH-HHHHEEEEEEEEEECCCT--TTTHHHHHHHHHHHHHHCSEEEEEEEECTT
T ss_pred             CCCc-CchhhhccHHHHHH-HHhhcCCCcEEEEecCCh--hhhhHHHHHHHHHHHhhcceeEEEEeeece
Confidence            8753 45568999999999 799999999999999887  678889999999999999999999874333

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=9.5e-50  Score=349.45  Aligned_cols=220  Identities=33%  Similarity=0.671  Sum_probs=207.0

Q ss_pred             cCeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEE
Q 025141           29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI  108 (257)
Q Consensus        29 ~~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~  108 (257)
                      +.|+.|..+++.+.+++++++|++.+|+||+|+|++++.+|++|++||.+|+++.|++.|||+|+|+|++.+++|++||+
T Consensus         2 ~~w~~e~~~~~~~~~~~i~~~l~~~~s~yQ~I~v~~~~~~g~~L~LDg~~q~~~~de~~Yhe~l~h~~l~~~~~p~~vLi   81 (274)
T d1iy9a_           2 ELWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLV   81 (274)
T ss_dssp             CEEEEEEEETTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEE
T ss_pred             CcceeeecCCCceEEEEEeeEEEeCcCCCcEEEEEEcCCcCeEEEECCceeeecCchhhchhhhccchhhccCCcceEEe
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCC
Q 025141          109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE  188 (257)
Q Consensus       109 IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~  188 (257)
                      ||+|+|+++++++++++..+|++|||||+|+++|+++|+.+...+++||++++++||++|++..+++||+|++|+++|. 
T Consensus        82 iGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~-  160 (274)
T d1iy9a_          82 VGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV-  160 (274)
T ss_dssp             ESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCC-
T ss_pred             cCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCC-
Confidence            9999999999999998889999999999999999999987666788999999999999999998899999999999987 


Q ss_pred             CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCc
Q 025141          189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSY  253 (257)
Q Consensus       189 ~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~  253 (257)
                       +++..|+|+|||+. ++++|+|+|++++|.++|  +..++.+..+.++|+++||+|.+|...-|
T Consensus       161 -~~~~~L~t~eFy~~-~~~~L~~~Gv~v~q~~s~--~~~~~~~~~i~~tl~~~F~~v~~y~~~vP  221 (274)
T d1iy9a_         161 -GPAVNLFTKGFYAG-IAKALKEDGIFVAQTDNP--WFTPELITNVQRDVKEIFPITKLYTANIP  221 (274)
T ss_dssp             -SCCCCCSTTHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHTTCSEEEEEEECCT
T ss_pred             -CcchhhccHHHHHH-HHhhcCCCceEEEecCCc--cccHHHHHHHHHhhhhhcCceEEEEEEee
Confidence             44568999999999 799999999999999887  67788999999999999999999986433

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-49  Score=350.53  Aligned_cols=219  Identities=32%  Similarity=0.655  Sum_probs=196.1

Q ss_pred             ccCeEEeeec--cccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCe
Q 025141           28 KSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT  105 (257)
Q Consensus        28 ~~~w~~~~~~--~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~  105 (257)
                      .++||.|..+  |+.+.++.++++|++++|+||+|.|++++++|++|++||.+|+++.|++.|||+|+|+|++.+++|++
T Consensus         2 ~~~w~~e~~~~~~~~~~~~~~~~~l~~~~S~yQ~I~v~~~~~~g~~L~lDg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~   81 (285)
T d2o07a1           2 REGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRK   81 (285)
T ss_dssp             BTTEEEECCTTSTTEEEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCE
T ss_pred             CCCcccccccCCCCceEEEEEeeEEEeCCCCCcEEEEEEeCCCCeEEEECCcEEEecCCHHHHHHHhccHhhhhCcCcCe
Confidence            4689999877  88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025141          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       106 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~  185 (257)
                      ||+||+|+|+++++++++++..+|++|||||+|+++|++||+.....+.+||++++++||++|++...++||+|++|+++
T Consensus        82 vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~  161 (285)
T d2o07a1          82 VLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSD  161 (285)
T ss_dssp             EEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-
T ss_pred             EEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCC
Confidence            99999999999999999988899999999999999999999865445789999999999999999888999999999998


Q ss_pred             CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeec
Q 025141          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFS  251 (257)
Q Consensus       186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~  251 (257)
                      |.  +++..|+|+|||+. ++++|+|||++++|+++|  +...+.++.+.++++++||+|.+|...
T Consensus       162 p~--~~~~~L~t~eF~~~-~~~~L~~~Gi~v~q~~s~--~~~~~~~~~~~~tl~~~F~~v~~y~~~  222 (285)
T d2o07a1         162 PM--GPAESLFKESYYQL-MKTALKEDGVLCCQGECQ--WLHLDLIKEMRQFCQSLFPVVAYAYCT  222 (285)
T ss_dssp             ------------CHHHHH-HHHHEEEEEEEEEEEECT--TTCHHHHHHHHHHHHHHCSEEEEEEEE
T ss_pred             CC--CcccccccHHHHHH-HHHhcCCCCeEEEeccch--hhhHHHHHHHHHHHHhcCCeeeEEeee
Confidence            86  45579999999999 799999999999999887  567889999999999999999998863

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.4e-49  Score=352.54  Aligned_cols=211  Identities=35%  Similarity=0.672  Sum_probs=187.2

Q ss_pred             cccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHH
Q 025141           38 ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA  117 (257)
Q Consensus        38 ~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~  117 (257)
                      |+.+.++.++++|++++|+||+|+|++++.+|++|+|||.+|+++.|++.|||+|+|+|++.+++|++||+||+|+|+++
T Consensus        42 pg~~~~~~v~~vl~~~~S~yQ~I~i~~~~~~G~~L~LDg~~q~~e~de~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~  121 (312)
T d2b2ca1          42 PGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGIL  121 (312)
T ss_dssp             TTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHH
T ss_pred             CCceEEEEEEEEEEecCCCCeEEEEEEcCCcCCEEEECCceeeecccHHHHHHHhhhHHHhcCCCCCeEEEeCCCchHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCch
Q 025141          118 REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYT  197 (257)
Q Consensus       118 ~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t  197 (257)
                      +++++++++.+|++|||||+|+++|++||+.....+.+||++++++||++|++...++||+||+|+++|.  +++..|++
T Consensus       122 rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp~--~~~~~L~t  199 (312)
T d2b2ca1         122 REVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFG  199 (312)
T ss_dssp             HHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------
T ss_pred             HHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCCC--Ccchhhhh
Confidence            9999998888999999999999999999986655678999999999999999998899999999999886  45578999


Q ss_pred             HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCc
Q 025141          198 KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSY  253 (257)
Q Consensus       198 ~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~  253 (257)
                      +|||+. ++++|+|||++++|.+++  +...+.+..+.++++++|++|.+|....+
T Consensus       200 ~eFy~~-~~~~L~~~Gi~v~q~~s~--~~~~~~~~~i~~~l~~vF~~v~~y~~~vP  252 (312)
T d2b2ca1         200 QSYYEL-LRDALKEDGILSSQGESV--WLHLPLIAHLVAFNRKIFPAVTYAQSIVS  252 (312)
T ss_dssp             --HHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSEEEEEEEECT
T ss_pred             HHHHHH-HHhhcCCCcEEEEecCCh--HHhHHHHHHHHHHhhhccceEEEeeeccC
Confidence            999999 799999999999999887  67788999999999999999999987433

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1e-48  Score=345.30  Aligned_cols=217  Identities=35%  Similarity=0.652  Sum_probs=201.9

Q ss_pred             ccCeEEeeec--cccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCe
Q 025141           28 KSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT  105 (257)
Q Consensus        28 ~~~w~~~~~~--~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~  105 (257)
                      .++|+.|...  ++.+.+++++++|++++|+||+|+|++++.+||+|+|||.+|+++.|++.|||+++|+|++.+++|++
T Consensus         4 ~~~w~~e~~~~~~~~~~~~~v~~~l~~~~S~yQ~i~v~~~~~~gr~L~LDg~~q~~e~de~~Yhe~l~h~~~~~~~~pk~   83 (290)
T d1xj5a_           4 IPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKK   83 (290)
T ss_dssp             CSSEEEECCTTSTTEEEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCCE
T ss_pred             CCcceeccccCCCCceEEEEEeeEEEeCCCCCeEEEEEEeCCCCeEEEECCeEeeeccchhHHHHHHhhHHHhhCCCCcc
Confidence            4579999865  88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-CceeEEEEcCC
Q 025141          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVIIGDLA  184 (257)
Q Consensus       106 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-~~fDvIi~D~~  184 (257)
                      ||+||+|+|+++++++++++..+|++|||||+|+++|++||+.....+.+||++++++||++|++... ++||+||+|++
T Consensus        84 VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~  163 (290)
T d1xj5a_          84 VLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSS  163 (290)
T ss_dssp             EEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCC
T ss_pred             eEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEEcCC
Confidence            99999999999999999988889999999999999999999865555789999999999999998754 68999999999


Q ss_pred             CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEe
Q 025141          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCAL  249 (257)
Q Consensus       185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~  249 (257)
                      +|.  +++..|+|+|||+. ++++|+|||++++|.+++  +.+.+.++.+.++++++||++.+|.
T Consensus       164 dp~--~~~~~L~t~eF~~~-~~~~L~~~Gi~v~q~~s~--~~~~~~~~~i~~~l~~vF~~~~~y~  223 (290)
T d1xj5a_         164 DPI--GPAKELFEKPFFQS-VARALRPGGVVCTQAESL--WLHMDIIEDIVSNCREIFKGSVNYA  223 (290)
T ss_dssp             CTT--SGGGGGGSHHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCC--CcchhhCCHHHHHH-HHHhcCCCcEEEEecCCc--HHHHHHHHHHHhhhhhhcccceeEe
Confidence            986  56679999999999 799999999999999887  5678899999999999999998875

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.6e-48  Score=346.00  Aligned_cols=227  Identities=43%  Similarity=0.703  Sum_probs=202.8

Q ss_pred             cccCeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeE
Q 025141           27 RKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (257)
Q Consensus        27 ~~~~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~V  106 (257)
                      ..+.|+.|..+++.+..++++++|++.+|+||+|+|++++.+||+|++||.+|+++.|++.|||+|+|+|++.+++|++|
T Consensus         2 ~~~~~~~e~~~~~~~~~~~~~~~l~~~~s~yQ~I~v~~~~~~G~~L~ldg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~V   81 (312)
T d1uira_           2 DYGMYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRV   81 (312)
T ss_dssp             CSSCEEEEESSSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEE
T ss_pred             CCcEEEEEecCCCceEEEEEEEEEEeCCCCCceEEEEEcCCcCcEEEECCeeeeccccHHHHHHHHhhhhhhhCCCcceE
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025141          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (257)
Q Consensus       107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~  185 (257)
                      |+||+|+|+++++++++++..+|++|||||+|+++|+++|+. +...+++||++++++||++|++..+++||+|++|+++
T Consensus        82 LiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~d  161 (312)
T d1uira_          82 LIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTD  161 (312)
T ss_dssp             EEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCC
T ss_pred             EEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCCC
Confidence            999999999999999998788999999999999999999963 4455689999999999999999988999999999998


Q ss_pred             CCC-CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCccc
Q 025141          186 PIE-GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       186 ~~~-~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~  255 (257)
                      |.. ..++..|+|+|||+. ++++|+|||++++|.+++. ....+....+.++|+++|++|.+|...-|+|
T Consensus       162 p~~~~~~~~~L~t~eF~~~-~~~~L~p~Gvlv~~~~s~~-~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~  230 (312)
T d1uira_         162 PVGEDNPARLLYTVEFYRL-VKAHLNPGGVMGMQTGMIL-LTHHRVHPVVHRTVREAFRYVRSYKNHIPGF  230 (312)
T ss_dssp             CBSTTCGGGGGSSHHHHHH-HHHTEEEEEEEEEEEEEEC-C---CHHHHHHHHHHTTCSEEEEEEEEEGGG
T ss_pred             cccccchhhhhhhHHHHHH-HHHhcCCCceEEEecCCcc-cchHHHHHHHHHHHHHhCceEEEEEeeeCCc
Confidence            653 235568999999999 7999999999999987663 2334566788899999999999998644433

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2e-45  Score=322.45  Aligned_cols=216  Identities=33%  Similarity=0.637  Sum_probs=192.7

Q ss_pred             EeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEecc
Q 025141           33 EEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGG  112 (257)
Q Consensus        33 ~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G  112 (257)
                      .|+.+++.+..|.++++|++.+|+||+|+|++++.+||+|+|||.+|+++.+++.||++|+|+|++.+++|++||+||+|
T Consensus         3 ~e~~~~~~~~~~~~~~~l~~~~S~yq~I~v~~~~~~gr~L~Ldg~~q~~~~de~~Yhe~l~~~~l~~~~~p~~vLiiG~G   82 (276)
T d1mjfa_           3 IEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGG   82 (276)
T ss_dssp             EEEEGGGEEEEECEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEEEECT
T ss_pred             eeEecCCceEEEEEeeEEEEecCCCeEEEEEEeCCCCeEEEECCceeeeccchhHHHHHhhcchhhcCCCCceEEEecCC
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC------CCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCC
Q 025141          113 EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE------AFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (257)
Q Consensus       113 ~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~------~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~  186 (257)
                      +|++++++++++. .+|++|||||+|+++|+++|+....      ...+||++++++||++|+++ .++||+|++|+++|
T Consensus        83 ~G~~~~~~l~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~yDvIi~D~~~~  160 (276)
T d1mjfa_          83 DGGTVREVLQHDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDP  160 (276)
T ss_dssp             TSHHHHHHTTSCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCC
T ss_pred             chHHHHHHHHhCC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cCCCCEEEEeCCCC
Confidence            9999999999864 7999999999999999999975432      24689999999999999986 57899999999987


Q ss_pred             CCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCccc
Q 025141          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       187 ~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~  255 (257)
                      .  +++..|+|.|||+. ++++|+|||++++|+++|  +..++.+..+.++|+++|++|.+|....|+|
T Consensus       161 ~--~~~~~L~t~eF~~~-~~~~L~~~Gv~v~q~~s~--~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~y  224 (276)
T d1mjfa_         161 V--GPAKVLFSEEFYRY-VYDALNNPGIYVTQAGSV--YLFTDELISAYKEMKKVFDRVYYYSFPVIGY  224 (276)
T ss_dssp             C-------TTSHHHHHH-HHHHEEEEEEEEEEEEET--TTSHHHHHHHHHHHHHHCSEEEEEEECCTTS
T ss_pred             C--CCcccccCHHHHHh-hHhhcCCCceEEEecCCc--chhHHHHHHHHHHHHhhCCeeEEEEecCcCC
Confidence            6  45578999999999 799999999999999877  5678889999999999999999998644443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.60  E-value=9.8e-15  Score=119.42  Aligned_cols=173  Identities=18%  Similarity=0.222  Sum_probs=115.9

Q ss_pred             cCCCcEEEEEecCCeeEEEE---cCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEE
Q 025141           55 TRYQDIALLDTKPFGKALVI---DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVM  131 (257)
Q Consensus        55 s~~~~i~v~~~~~~g~~L~l---dG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~  131 (257)
                      +..++.+.++..-.|+.+.+   .|..-....|.  -.+.+..  .+...++++|||||||+|.++..+++..  .+|++
T Consensus         6 ~~~~~~~~~~~~~~g~~~~~~t~~gvF~~~~~d~--~t~lLi~--~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~v~~   79 (194)
T d1dusa_           6 TTKSDVKIVEDILRGKKLKFKTDSGVFSYGKVDK--GTKILVE--NVVVDKDDDILDLGCGYGVIGIALADEV--KSTTM   79 (194)
T ss_dssp             CSCCCEEEEEEEETTEEEEEEEETTSTTTTSCCH--HHHHHHH--HCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEE
T ss_pred             CCccceEEEEEEECCeeEEEEcCCCccCCCCcCH--HHHHHHH--hCCcCCCCeEEEEeecCChhHHHHHhhc--cccce
Confidence            34556666665544554432   23321112221  2333332  2233567899999999999999998853  58999


Q ss_pred             EECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCC
Q 025141          132 CDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP  211 (257)
Q Consensus       132 VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p  211 (257)
                      +|+|+.+++.|++++..++  ....+++++.+|..+.+.  +++||+|+++++-..  ..   -...++++. ++++|+|
T Consensus        80 iD~s~~~i~~a~~n~~~~~--l~~~~i~~~~~d~~~~~~--~~~fD~Ii~~~p~~~--~~---~~~~~~l~~-~~~~Lkp  149 (194)
T d1dusa_          80 ADINRRAIKLAKENIKLNN--LDNYDIRVVHSDLYENVK--DRKYNKIITNPPIRA--GK---EVLHRIIEE-GKELLKD  149 (194)
T ss_dssp             EESCHHHHHHHHHHHHHTT--CTTSCEEEEECSTTTTCT--TSCEEEEEECCCSTT--CH---HHHHHHHHH-HHHHEEE
T ss_pred             eeeccccchhHHHHHHHhC--CccceEEEEEcchhhhhc--cCCceEEEEcccEEe--cc---hhhhhHHHH-HHHhcCc
Confidence            9999999999999987553  345789999999877543  578999999976322  11   123578888 7999999


Q ss_pred             CcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEe
Q 025141          212 EGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCAL  249 (257)
Q Consensus       212 gGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~  249 (257)
                      ||++++....      ......+...+++.|.++....
T Consensus       150 gG~l~i~~~~------~~~~~~~~~~l~~~f~~~~~~~  181 (194)
T d1dusa_         150 NGEIWVVIQT------KQGAKSLAKYMKDVFGNVETVT  181 (194)
T ss_dssp             EEEEEEEEES------THHHHHHHHHHHHHHSCCEEEE
T ss_pred             CcEEEEEEeC------cCCHHHHHHHHHHhCCcEEEEE
Confidence            9988764321      2234566677788887776543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.9e-15  Score=125.79  Aligned_cols=109  Identities=10%  Similarity=0.097  Sum_probs=87.2

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV  178 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDv  178 (257)
                      .+++++||+||||+|.++.+++++. ..+|++||+||.+++.|++++...     ..++.++.+|+....... .++||.
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~  124 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ-----THKVIPLKGLWEDVAPTLPDGHFDG  124 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGC-----SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             ccCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhc-----ccccccccccccccccccccccccc
Confidence            3677899999999999999999875 468999999999999999987643     367889999998877653 478999


Q ss_pred             EEEcCCCCCCCCcccCCc-hHHHHHHHHcCcCCCCcEEEE
Q 025141          179 IIGDLADPIEGGPCYKLY-TKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~-t~ef~~~~~~~~L~pgGil~~  217 (257)
                      |+.|...... .. .++. ...+++. ++++|||||++++
T Consensus       125 i~fD~~~~~~-~~-~~~~~~~~~~~~-~~r~LkpGG~~~~  161 (229)
T d1zx0a1         125 ILYDTYPLSE-ET-WHTHQFNFIKNH-AFRLLKPGGVLTY  161 (229)
T ss_dssp             EEECCCCCBG-GG-TTTHHHHHHHHT-HHHHEEEEEEEEE
T ss_pred             eeeccccccc-cc-ccccCHHHHHHH-HHHHcCCCcEEEE
Confidence            9999874321 11 2232 3568888 7999999999986

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.54  E-value=1.2e-13  Score=112.18  Aligned_cols=122  Identities=18%  Similarity=0.174  Sum_probs=94.6

Q ss_pred             cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ...+..+|||||||+|.++.++++.  ..+|++||+++++++.|++++..++   ..++++++++|+.+.+.. .+.||.
T Consensus        30 ~~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~g---l~~~v~~~~gda~~~~~~-~~~~D~  103 (186)
T d1l3ia_          30 EPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHG---LGDNVTLMEGDAPEALCK-IPDIDI  103 (186)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT---CCTTEEEEESCHHHHHTT-SCCEEE
T ss_pred             CCCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcC---CCcceEEEECchhhcccc-cCCcCE
Confidence            3456789999999999999999885  3699999999999999999987553   346999999999888643 478999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F  242 (257)
                      |+++....         ...++++. +++.|||||.+++...      ..+....+.+.+++..
T Consensus       104 v~~~~~~~---------~~~~~~~~-~~~~LkpgG~lvi~~~------~~e~~~~~~~~l~~~~  151 (186)
T d1l3ia_         104 AVVGGSGG---------ELQEILRI-IKDKLKPGGRIIVTAI------LLETKFEAMECLRDLG  151 (186)
T ss_dssp             EEESCCTT---------CHHHHHHH-HHHTEEEEEEEEEEEC------BHHHHHHHHHHHHHTT
T ss_pred             EEEeCccc---------cchHHHHH-HHHHhCcCCEEEEEee------ccccHHHHHHHHHHcC
Confidence            99985421         13578888 7999999999988642      2334445566666653

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.53  E-value=8e-15  Score=115.77  Aligned_cols=109  Identities=15%  Similarity=0.224  Sum_probs=86.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      -+.++|||+|||+|+++.+++.+ +..+|++||+|+.+++.+++++...+   ...+++++.+|+.+++....++||+|+
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~---~~~~~~ii~~D~~~~l~~~~~~fDiIf   88 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTK---AENRFTLLKMEAERAIDCLTGRFDLVF   88 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTT---CGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             CCCCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhhhhhhhhhhhcc---cccchhhhcccccccccccccccceeE
Confidence            46789999999999999998885 56799999999999999999987553   346899999999999988888999999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHH-HcCcCCCCcEEEEecC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFV-VKPRLNPEGIFVTQAG  220 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~-~~~~L~pgGil~~~~~  220 (257)
                      +|||-..      ..+ ...+..+ -.+.|+|+|++++...
T Consensus        89 ~DPPy~~------~~~-~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          89 LDPPYAK------ETI-VATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             ECCSSHH------HHH-HHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             echhhcc------chH-HHHHHHHHHCCCcCCCeEEEEEeC
Confidence            9986211      111 2233331 1468999999998753

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.50  E-value=4.3e-14  Score=117.43  Aligned_cols=104  Identities=18%  Similarity=0.269  Sum_probs=82.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|||||||+|..+..++++.  .+|++||+++.+++.|++.+...    ..++++++++|+.+. ....++||+|+
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~----~~~~i~~~~~d~~~l-~~~~~~fD~v~   86 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGN----GHQQVEYVQGDAEQM-PFTDERFHIVT   86 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEECCC-CC-CSCTTCEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccc----ccccccccccccccc-ccccccccccc
Confidence            456899999999999999999863  58999999999999999987654    347899999998763 33468899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-.+...      -..++++ ++++|+|||++++.
T Consensus        87 ~~~~l~~~~d------~~~~l~~-~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          87 CRIAAHHFPN------PASFVSE-AYRVLKKGGQLLLV  117 (231)
T ss_dssp             EESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEE
T ss_pred             ccccccccCC------HHHHHHH-HHHhcCCCcEEEEE
Confidence            8754222111      2478898 79999999988864

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=4e-14  Score=119.41  Aligned_cols=105  Identities=20%  Similarity=0.141  Sum_probs=83.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++|||||||+|.++..+++..+ .+|++||+++.+++.|++.....+   .+++++++.+|+.+..  .+++||+|+
T Consensus        32 ~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~g---l~~~v~~~~~d~~~~~--~~~~fD~v~  105 (245)
T d1nkva_          32 KPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELG---VSERVHFIHNDAAGYV--ANEKCDVAA  105 (245)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCCTTCC--CSSCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhh---ccccchhhhhHHhhcc--ccCceeEEE
Confidence            4568999999999999999988655 699999999999999999876443   3568999999998863  457899998


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +-..-.+  .+    --..++++ +++.|||||.+++.
T Consensus       106 ~~~~~~~--~~----d~~~~l~~-~~r~LkPGG~l~i~  136 (245)
T d1nkva_         106 CVGATWI--AG----GFAGAEEL-LAQSLKPGGIMLIG  136 (245)
T ss_dssp             EESCGGG--TS----SSHHHHHH-HTTSEEEEEEEEEE
T ss_pred             EEehhhc--cC----CHHHHHHH-HHHHcCcCcEEEEE
Confidence            7643211  11    12578899 79999999999885

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.50  E-value=3.8e-13  Score=118.24  Aligned_cols=138  Identities=14%  Similarity=0.078  Sum_probs=99.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fD  177 (257)
                      .+.++||+++||+|+.+..+++.  ..+|++||+++..++.|++++..++    -.+++++.+|++++++.   ..++||
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ng----l~~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNG----LGNVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTT----CTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcC----CCCcceeeccHHHHhhhhHhhhcCCC
Confidence            46789999999999999988763  4799999999999999999998774    24789999999998654   457999


Q ss_pred             EEEEcCCCCCCCCcccCCch-----HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHH-HHHHHhhhCCceEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC-IYNTLRQVFKCGCCAL  249 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t-----~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~-~~~~l~~~F~~v~~~~  249 (257)
                      +|++|++.... .. ..+..     .+.++. +.+.|+|||++++.+.++.  ...+.+.. +.+.+...-..++...
T Consensus       218 ~Vi~DpP~~~~-~~-~~~~~~~~~~~~l~~~-a~~lLkpGG~Lv~~scs~~--~~~~~f~~~v~~a~~~a~~~~~~~~  290 (318)
T d1wxxa2         218 LVVLDPPAFAK-GK-KDVERAYRAYKEVNLR-AIKLLKEGGILATASCSHH--MTEPLFYAMVAEAAQDAHRLLRVVE  290 (318)
T ss_dssp             EEEECCCCSCC-ST-TSHHHHHHHHHHHHHH-HHHTEEEEEEEEEEECCTT--SCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEcCCcccc-ch-HHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEeCCcc--cCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            99999974221 11 12221     356666 6889999999998766553  33444444 3444555544554443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=5.3e-13  Score=114.91  Aligned_cols=164  Identities=15%  Similarity=0.156  Sum_probs=114.9

Q ss_pred             eeEEEEcCcccccCCCchhHHHHHHHHHhh-cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 025141           69 GKALVIDGKLQSAEVDEFIYHESLVHPALL-HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (257)
Q Consensus        69 g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~-~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (257)
                      |..+.+|-.+....++    +|.++...+. ....+.+|||+|||+|.++..+++..+..+|+++|+++..++.|+++..
T Consensus        78 ~~~~~v~~~VlIPRpe----TE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~  153 (274)
T d2b3ta1          78 SLPLFVSPATLIPRPD----TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ  153 (274)
T ss_dssp             TEEEECCTTSCCCCTT----HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred             eeEEEEeccccccccc----hhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHH
Confidence            5556666555554443    4445443333 2345678999999999999999887667899999999999999999987


Q ss_pred             hccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCC----------CCcccCCch--------HHHHHHHHcCc
Q 025141          148 VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKLYT--------KSFYEFVVKPR  208 (257)
Q Consensus       148 ~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~-~~~----------~~p~~~L~t--------~ef~~~~~~~~  208 (257)
                      .++    -.+++++.+|..+.+.  ..+||+|+++||- +..          ..|...|+.        +.++.. +.+.
T Consensus       154 ~~~----~~~v~~~~~d~~~~~~--~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~-a~~~  226 (274)
T d2b3ta1         154 HLA----IKNIHILQSDWFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQ-SRNA  226 (274)
T ss_dssp             HHT----CCSEEEECCSTTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHH-HGGG
T ss_pred             HhC----cccceeeecccccccC--CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHH-HHHh
Confidence            553    3579999999877653  4689999999872 211          133334443        346666 6899


Q ss_pred             CCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEee
Q 025141          209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALF  250 (257)
Q Consensus       209 L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~  250 (257)
                      |+|||.+++..+.    .+.+   .+.+.+++. |..+..+..
T Consensus       227 L~~~G~l~lEig~----~q~~---~v~~~l~~~gf~~i~~~kD  262 (274)
T d2b3ta1         227 LVSGGFLLLEHGW----QQGE---AVRQAFILAGYHDVETCRD  262 (274)
T ss_dssp             EEEEEEEEEECCS----SCHH---HHHHHHHHTTCTTCCEEEC
T ss_pred             cCCCCEEEEEECc----hHHH---HHHHHHHHCCCCeEEEEEC
Confidence            9999999998753    2333   444555544 777776654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.49  E-value=4.8e-13  Score=117.56  Aligned_cols=126  Identities=13%  Similarity=0.124  Sum_probs=94.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fD  177 (257)
                      .++++||+++||+|+++..+++. +..+|++||+++..++.+++++..++  +...+++++.+|++++++.   ..++||
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~--l~~~~~~~i~~d~~~~l~~~~~~~~~fD  219 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANH--LDMANHQLVVMDVFDYFKYARRHHLTYD  219 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTT--CCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhc--ccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence            46789999999999999988774 56799999999999999999998774  3446899999999999864   457899


Q ss_pred             EEEEcCCCCCCCCcccCCch-----HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHH
Q 025141          178 VIIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI  234 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t-----~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~  234 (257)
                      +|++|||.-.. .+ ..+.+     .+.++. +.+.|+|||++++-+.++.  ...+.+..+
T Consensus       220 ~Ii~DPP~f~~-~~-~~~~~~~~~~~~L~~~-a~~ll~pgG~l~~~scs~~--~~~~~f~~~  276 (317)
T d2b78a2         220 IIIIDPPSFAR-NK-KEVFSVSKDYHKLIRQ-GLEILSENGLIIASTNAAN--MTVSQFKKQ  276 (317)
T ss_dssp             EEEECCCCC-------CCCCHHHHHHHHHHH-HHHTEEEEEEEEEEECCTT--SCHHHHHHH
T ss_pred             EEEEcChhhcc-ch-hHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEeCCcc--CCHHHHHHH
Confidence            99999984211 11 12221     356666 5789999999998776653  334444333

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.48  E-value=4.9e-14  Score=119.99  Aligned_cols=125  Identities=14%  Similarity=0.144  Sum_probs=97.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.+||++|||+|+++..+++. .+..+|+++|++++.++.|++++....   ...+++++.+|..+.+.  ++.||.|
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~---~~~nv~~~~~Di~~~~~--~~~fD~V  158 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY---DIGNVRTSRSDIADFIS--DQMYDAV  158 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS---CCTTEEEECSCTTTCCC--SCCEEEE
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc---CCCceEEEEeeeecccc--cceeeee
Confidence            45689999999999999999875 345799999999999999999986432   35789999999877643  4689999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEE
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCA  248 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~  248 (257)
                      ++|.++|+           ++++. +++.|||||++++..  |    ..+...++.+.|++. |.....+
T Consensus       159 ~ld~p~p~-----------~~l~~-~~~~LKpGG~lv~~~--P----~i~Qv~~~~~~l~~~gf~~i~~~  210 (250)
T d1yb2a1         159 IADIPDPW-----------NHVQK-IASMMKPGSVATFYL--P----NFDQSEKTVLSLSASGMHHLETV  210 (250)
T ss_dssp             EECCSCGG-----------GSHHH-HHHTEEEEEEEEEEE--S----SHHHHHHHHHHSGGGTEEEEEEE
T ss_pred             eecCCchH-----------HHHHH-HHHhcCCCceEEEEe--C----CcChHHHHHHHHHHCCCceeEEE
Confidence            99988664           33577 689999999999864  3    234456777777765 6554443

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.48  E-value=7.8e-14  Score=116.70  Aligned_cols=104  Identities=19%  Similarity=0.234  Sum_probs=82.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|||||||+|.++..+++..  .+|++||+++.+++.|++++...+    .+++.++.+|+.+ +.-.+++||+|+
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~----~~~~~~~~~d~~~-~~~~~~~fD~v~   87 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG----VENVRFQQGTAES-LPFPDDSFDIIT   87 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT----CCSEEEEECBTTB-CCSCTTCEEEEE
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccc----ccccccccccccc-ccccccccceee
Confidence            456899999999999999999863  589999999999999999886542    3689999999876 334568899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-.+...      -.++++. ++++|+|||++++.
T Consensus        88 ~~~~l~~~~d------~~~~l~~-~~r~LkpgG~~~~~  118 (234)
T d1xxla_          88 CRYAAHHFSD------VRKAVRE-VARVLKQDGRFLLV  118 (234)
T ss_dssp             EESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEE
T ss_pred             eeceeecccC------HHHHHHH-HHHeeCCCcEEEEE
Confidence            8654222111      2578899 79999999988764

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.48  E-value=3.3e-13  Score=111.51  Aligned_cols=128  Identities=10%  Similarity=0.114  Sum_probs=101.0

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEE
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG  181 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi~  181 (257)
                      ..-||+||||.|..+..+++..+...+++||+++..++.|.+.....    ...|+.++.+|+...+.. .++.+|.|++
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~----~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i  105 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS----EAQNVKLLNIDADTLTDVFEPGEVKRVYL  105 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS----CCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHH----hccCchhcccchhhhhcccCchhhhcccc
Confidence            34799999999999999988766789999999999999999887644    246899999999887653 4578999999


Q ss_pred             cCCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          182 DLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       182 D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      .-++|+....  ...+.+.+|++. ++++|||||+|.+.+.      .......+...+.+.
T Consensus       106 ~fp~P~~k~~h~k~Rl~~~~~l~~-~~r~LkpgG~l~i~TD------~~~y~~~~~~~~~~~  160 (204)
T d2fcaa1         106 NFSDPWPKKRHEKRRLTYSHFLKK-YEEVMGKGGSIHFKTD------NRGLFEYSLKSFSEY  160 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHH-HHHHHTTSCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhcchhhhHHHHHHH-HHHhCCCCcEEEEEEC------ChHHHHHHHHHHHHC
Confidence            9888873221  236788999999 8999999999988643      244555566666653

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.47  E-value=1.9e-13  Score=117.12  Aligned_cols=129  Identities=18%  Similarity=0.187  Sum_probs=98.3

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ..++.+||++|||+|+++..+++. .+..+|+++|++++.++.|++++..... ....+++++++|+.+. ...++.||.
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~-~~~~nv~~~~~d~~~~-~~~~~~fDa  171 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-QPPDNWRLVVSDLADS-ELPDGSVDR  171 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT-SCCTTEEEECSCGGGC-CCCTTCEEE
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc-CCCceEEEEecccccc-cccCCCcce
Confidence            345789999999999999999985 3457999999999999999998863211 1346899999998663 234578999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh--CCceEEE
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV--FKCGCCA  248 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~--F~~v~~~  248 (257)
                      |++|.++||           ++++. ++++|||||.+++..  |    ..+...++.+.|++.  |-++..+
T Consensus       172 V~ldlp~P~-----------~~l~~-~~~~LkpGG~lv~~~--P----~i~Qv~~~~~~l~~~~~f~~i~~~  225 (264)
T d1i9ga_         172 AVLDMLAPW-----------EVLDA-VSRLLVAGGVLMVYV--A----TVTQLSRIVEALRAKQCWTEPRAW  225 (264)
T ss_dssp             EEEESSCGG-----------GGHHH-HHHHEEEEEEEEEEE--S----SHHHHHHHHHHHHHHSSBCCCEEE
T ss_pred             EEEecCCHH-----------HHHHH-HHhccCCCCEEEEEe--C----ccChHHHHHHHHHHcCCeecceEE
Confidence            999998776           33567 689999999999875  3    234566777778643  6655543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.46  E-value=2.3e-12  Score=113.41  Aligned_cols=138  Identities=16%  Similarity=0.119  Sum_probs=99.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fD  177 (257)
                      .+.++||++|||+|+.+..+++. +..+|++||+++..++.+++++..++   -.++++++.+|+.+++..   ..++||
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ng---l~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNG---VEDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcC---CCccceeeechhhhhhHHHHhccCCCC
Confidence            45789999999999999998886 45799999999999999999998774   246899999999998753   467999


Q ss_pred             EEEEcCCCCCCCCcccCCc-----hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHH-HHHHHHhhhCCceEE
Q 025141          178 VIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFS-CIYNTLRQVFKCGCC  247 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~-~~~~~l~~~F~~v~~  247 (257)
                      +|++|++.... .. ....     -.+++.. +.++|+|||++++-..++.  ...+.+. .+.+...+.-..+..
T Consensus       220 ~Vi~DpP~~~~-~~-~~~~~~~~~y~~l~~~-a~~ll~pGG~lv~~s~s~~--~~~~~f~~~v~~a~~~~gr~~~~  290 (324)
T d2as0a2         220 IVVLDPPAFVQ-HE-KDLKAGLRAYFNVNFA-GLNLVKDGGILVTCSCSQH--VDLQMFKDMIIAAGAKAGKFLKM  290 (324)
T ss_dssp             EEEECCCCSCS-SG-GGHHHHHHHHHHHHHH-HHTTEEEEEEEEEEECCTT--SCHHHHHHHHHHHHHHTTEEEEE
T ss_pred             chhcCCccccC-CH-HHHHHHHHHHHHHHHH-HHHHcCCCcEEEEEeCCcc--CCHHHHHHHHHHHHHHcCCeEEE
Confidence            99999984321 11 1111     1345666 6889999999988765553  2334343 333444444444443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.46  E-value=5.3e-14  Score=118.52  Aligned_cols=105  Identities=13%  Similarity=0.217  Sum_probs=82.1

Q ss_pred             cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ..+++++|||||||+|..+..+++..  .+|++||+++.+++.|++.++..     ..+++++.+|++++  ...++||+
T Consensus        34 ~~~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~-----~~~v~~~~~d~~~~--~~~~~fD~  104 (246)
T d1y8ca_          34 NNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQ-----GLKPRLACQDISNL--NINRKFDL  104 (246)
T ss_dssp             TTCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECCCGGGC--CCSCCEEE
T ss_pred             hCCCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhcccccccc-----Cccceeeccchhhh--cccccccc
Confidence            34667899999999999999999863  48999999999999999987644     24799999999875  23578999


Q ss_pred             EEEcCCCCCCCCcccCCc----hHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLY----TKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~----t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |++-...      -.++.    ...+++. +++.|+|||++++..
T Consensus       105 i~~~~~~------~~~~~~~~~~~~~l~~-~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_         105 ITCCLDS------TNYIIDSDDLKKYFKA-VSNHLKEGGVFIFDI  142 (246)
T ss_dssp             EEECTTG------GGGCCSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             cceeeee------eeccCCHHHHHHHHHH-HHHhCCCCeEEEEEe
Confidence            9873211      01221    2358898 799999999999754

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.45  E-value=2.9e-13  Score=118.29  Aligned_cols=139  Identities=15%  Similarity=0.202  Sum_probs=97.2

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCce
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESY  176 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~f  176 (257)
                      ..++++||+++||+|+++..+++. + ++|+.||+++..++.|++++.+++  +.+.+++++.+|+++|++.   ..++|
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~-G-A~V~~VD~s~~al~~a~~N~~ln~--~~~~~~~~i~~D~~~~l~~~~~~~~~f  205 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA-G-AEVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFIQREERRGSTY  205 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC-C-CeEEEEeChHHHHHHHHHhhhhhc--ccCCcEEEEeCCHHHhHHHHhhcCCCC
Confidence            456789999999999999998884 4 489999999999999999998774  3456899999999999865   35789


Q ss_pred             eEEEEcCCCCCCCCcccCCc-----hHHHHHHHHcCcCCCCcE-EEEecCCCCCCCChHHHHHHHH-HHhhhCCceE
Q 025141          177 DVIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGI-FVTQAGPAGIFSHTEVFSCIYN-TLRQVFKCGC  246 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGi-l~~~~~~~~~~~~~~~~~~~~~-~l~~~F~~v~  246 (257)
                      |+||+|+|.-.. ++....+     -....+. ++++|+|||. +++.+.++  ......+..+++ .++.....+.
T Consensus       206 D~IilDPP~f~~-~~~~~~~~~~~~~~~l~~~-~~~ll~~~g~~ll~t~~s~--~~s~~~~~~~~~~~~~~ag~~v~  278 (309)
T d2igta1         206 DIILTDPPKFGR-GTHGEVWQLFDHLPLMLDI-CREILSPKALGLVLTAYSI--RASFYSMHELMRETMRGAGGVVA  278 (309)
T ss_dssp             SEEEECCCSEEE-CTTCCEEEHHHHHHHHHHH-HHHTBCTTCCEEEEEECCT--TSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             CEEEECCCcccc-cccchhHHHHHHHHHHHHH-HHHhcCCCCCEEEEecCCC--CCCHHHHHHHHHHHHHhcCCcce
Confidence            999999983110 1111111     2344555 5889999985 44444444  234444544443 3444444444

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=3.7e-13  Score=114.75  Aligned_cols=130  Identities=15%  Similarity=0.142  Sum_probs=96.9

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ..++++|||+|||+|.++..+++. + .+|++||+||.+++.|+++...++     -+.+++.+|..+.+.  .++||+|
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~-g-~~V~gvDis~~av~~A~~na~~n~-----~~~~~~~~d~~~~~~--~~~fD~V  188 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKL-G-GKALGVDIDPMVLPQAEANAKRNG-----VRPRFLEGSLEAALP--FGPFDLL  188 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCGGGHHHHHHHHHHTT-----CCCEEEESCHHHHGG--GCCEEEE
T ss_pred             cCccCEEEEcccchhHHHHHHHhc-C-CEEEEEECChHHHHHHHHHHHHcC-----CceeEEecccccccc--ccccchh
Confidence            356789999999999999988875 4 589999999999999999987653     356889999887654  3689999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEeecCcc
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALFSSYS  254 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~~~~  254 (257)
                      +.+...    .+     ..++++. ++++|||||++++..     +.. .....+.+.+++. |..+.......|.
T Consensus       189 ~ani~~----~~-----l~~l~~~-~~~~LkpGG~lilSg-----il~-~~~~~v~~~~~~~Gf~~~~~~~~~~Wv  248 (254)
T d2nxca1         189 VANLYA----EL-----HAALAPR-YREALVPGGRALLTG-----ILK-DRAPLVREAMAGAGFRPLEEAAEGEWV  248 (254)
T ss_dssp             EEECCH----HH-----HHHHHHH-HHHHEEEEEEEEEEE-----EEG-GGHHHHHHHHHHTTCEEEEEEEETTEE
T ss_pred             hhcccc----cc-----HHHHHHH-HHHhcCCCcEEEEEe-----cch-hhHHHHHHHHHHCCCEEEEEEEECCEE
Confidence            987532    11     2467788 789999999999753     111 1234566666665 7667766666664

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2.6e-13  Score=110.12  Aligned_cols=105  Identities=13%  Similarity=0.113  Sum_probs=85.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ...+|||++||+|+++.+++.+ +..+|+.||+|+.+++.+++++...    ...+.+++.+|+.+++....++||+|++
T Consensus        43 ~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~----~~~~~~ii~~d~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATL----KAGNARVVNSNAMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHT----TCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             chhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhc----cccceeeeeecccccccccccccCEEEE
Confidence            5679999999999999999985 5679999999999999999998754    2357899999999999888889999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHH--cCcCCCCcEEEEec
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQA  219 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~--~~~L~pgGil~~~~  219 (257)
                      |||-..      .+ ..+.+.. +  ...|+|+|+++++.
T Consensus       118 DPPY~~------~~-~~~~l~~-l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         118 DPPFRR------GL-LEETINL-LEDNGWLADEALIYVES  149 (183)
T ss_dssp             CCSSST------TT-HHHHHHH-HHHTTCEEEEEEEEEEE
T ss_pred             cCcccc------ch-HHHHHHH-HHHCCCCCCCeEEEEEe
Confidence            986321      12 2334444 3  35799999999874

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.42  E-value=1.7e-13  Score=117.95  Aligned_cols=105  Identities=16%  Similarity=0.151  Sum_probs=83.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +++.+|||||||+|..+..++++.+ .+|++||+++.+++.|+++....+   ..++++++.+|+.+. ...+++||+|+
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~i~~a~~~~~~~g---l~~~v~~~~~d~~~l-~~~~~sfD~V~  140 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAG---LADNITVKYGSFLEI-PCEDNSYDFIW  140 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHT---CTTTEEEEECCTTSC-SSCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCC-cEEEEEeccchhhhhhhccccccc---ccccccccccccccc-cccccccchhh
Confidence            5678999999999999999988654 589999999999999999876442   346999999998764 33457899998


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +-.. .+.   +    --..+++. ++++|||||++++.
T Consensus       141 ~~~~l~h~---~----d~~~~l~~-~~~~LkpgG~l~~~  171 (282)
T d2o57a1         141 SQDAFLHS---P----DKLKVFQE-CARVLKPRGVMAIT  171 (282)
T ss_dssp             EESCGGGC---S----CHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             ccchhhhc---c----CHHHHHHH-HHHhcCCCcEEEEE
Confidence            7543 221   1    12468898 79999999998875

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=3.1e-13  Score=113.49  Aligned_cols=106  Identities=17%  Similarity=0.273  Sum_probs=81.6

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ..++++||+||||+|..+..+++. + .+|++||+++.+++.|++.++..     ..+++++.+|+.++  ..+++||+|
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~-~-~~v~gvD~s~~mi~~a~~~~~~~-----~~~i~~~~~d~~~l--~~~~~fD~I  109 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAER-G-YEVVGLDLHEEMLRVARRKAKER-----NLKIEFLQGDVLEI--AFKNEFDAV  109 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEESCGGGC--CCCSCEEEE
T ss_pred             CCCCCEEEEeCCCCCccchhhccc-c-eEEEEEeeccccccccccccccc-----cccchheehhhhhc--ccccccchH
Confidence            455689999999999999999986 3 48999999999999999987643     35899999998775  234689999


Q ss_pred             EEcCCC-CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++-... ... .+  . -...+++. ++++|+|||++++..
T Consensus       110 ~~~~~~~~~~-~~--~-~~~~~L~~-~~~~LkpgG~lii~~  145 (251)
T d1wzna1         110 TMFFSTIMYF-DE--E-DLRKLFSK-VAEALKPGGVFITDF  145 (251)
T ss_dssp             EECSSGGGGS-CH--H-HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             hhhhhhhhcC-Ch--H-HHHHHHHH-HHHHcCCCcEEEEEe
Confidence            974211 110 11  0 12478898 799999999998754

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.40  E-value=7.1e-13  Score=108.97  Aligned_cols=106  Identities=18%  Similarity=0.212  Sum_probs=81.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ++..+|||||||+|..+..+++. + .+|+++|+++.+++.|++.+...     ..++.++.+|+.+. ....+.||+|+
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~-~-~~v~giD~S~~~i~~ak~~~~~~-----~~~~~~~~~d~~~l-~~~~~~fD~I~  107 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY-G-FEVVGVDISEDMIRKAREYAKSR-----ESNVEFIVGDARKL-SFEDKTFDYVI  107 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCTTSC-CSCTTCEEEEE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh-h-cccccccccccchhhhhhhhccc-----cccccccccccccc-cccCcCceEEE
Confidence            56689999999999999999985 3 58999999999999999887543     25678899998774 44568899998


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +-..-.+  -+..  --..+++. +.+.|||||.+++..
T Consensus       108 ~~~~l~~--~~~~--d~~~~l~~-i~~~LkpgG~lii~~  141 (226)
T d1ve3a1         108 FIDSIVH--FEPL--ELNQVFKE-VRRVLKPSGKFIMYF  141 (226)
T ss_dssp             EESCGGG--CCHH--HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Eecchhh--CChh--HHHHHHHH-HHHHcCcCcEEEEEE
Confidence            8643111  0100  12357898 799999999988764

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.39  E-value=5.2e-12  Score=104.14  Aligned_cols=129  Identities=16%  Similarity=0.219  Sum_probs=100.5

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi  180 (257)
                      ...-||+||||.|..+.++++..+...+++||+++.++..|.+.....    .-++++++.+|+..+... ....+|.|+
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~----~l~Ni~~~~~da~~l~~~~~~~~~~~i~  106 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV----GVPNIKLLWVDGSDLTDYFEDGEIDRLY  106 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH----CCSSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhh----ccccceeeecCHHHHhhhccCCceehhc
Confidence            344799999999999999988766689999999999999988876544    246899999999887644 347899999


Q ss_pred             EcCCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          181 GDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       181 ~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      +.-++||....  ...+.+.+|++. ++++|+|||.+.+.+.      ....+..+...+.+.
T Consensus       107 i~fPdPw~K~~h~krRl~~~~~l~~-~~~~LkpgG~l~i~TD------~~~Y~~~~le~~~~~  162 (204)
T d1yzha1         107 LNFSDPWPKKRHEKRRLTYKTFLDT-FKRILPENGEIHFKTD------NRGLFEYSLVSFSQY  162 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHH-HHHHSCTTCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhhHHHHHHH-HHHhCCCCcEEEEEEC------CccHHHHHHHHHHHC
Confidence            99999884221  236788999999 7999999999987653      234455555666554

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.39  E-value=1.5e-12  Score=107.89  Aligned_cols=135  Identities=14%  Similarity=0.127  Sum_probs=99.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDv  178 (257)
                      .+..+||+||||+|..+..+++..+..+|++||++|.+++.+++.....      +++.++.+|+...-..  ....+|+
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~------~ni~~i~~d~~~~~~~~~~~~~vd~  128 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------NNIIPLLFDASKPWKYSGIVEKVDL  128 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------SSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc------CCceEEEeeccCccccccccceEEE
Confidence            3458999999999999999998755579999999999999999876532      5899999998764332  2357888


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec-----CCCCCCCChHHHHHHHHHHhhhCCceEEEeecC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA-----GPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSS  252 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~-----~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~  252 (257)
                      |+.|.+.+.        ....+++. +++.|||||.+++-.     .++  ......++...+.+++-|.-+.....++
T Consensus       129 v~~~~~~~~--------~~~~~l~~-~~~~LkpgG~l~i~~~~~~~d~~--~~~~~~~~~~~~~l~~gf~i~E~i~L~P  196 (209)
T d1nt2a_         129 IYQDIAQKN--------QIEILKAN-AEFFLKEKGEVVIMVKARSIDST--AEPEEVFKSVLKEMEGDFKIVKHGSLMP  196 (209)
T ss_dssp             EEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEHHHHCTT--SCHHHHHHHHHHHHHTTSEEEEEEECTT
T ss_pred             EEecccChh--------hHHHHHHH-HHHHhccCCeEEEEEEccccCCC--CCHHHHHHHHHHHHHcCCEEEEEEccCC
Confidence            888865432        23578898 799999999887642     222  1234566677777777787666655544

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=7.9e-13  Score=113.42  Aligned_cols=126  Identities=19%  Similarity=0.217  Sum_probs=96.5

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ..+..+||++|||+|+++..+++. .+..+|+++|++++.++.|++++...+   ...++.+...|....+  ....||.
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g---~~~~v~~~~~d~~~~~--~~~~~D~  175 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG---LIERVTIKVRDISEGF--DEKDVDA  175 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT---CGGGEEEECCCGGGCC--SCCSEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc---cccCcEEEeccccccc--cccceee
Confidence            456789999999999999999875 345799999999999999999987542   3468999999964432  3467999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEE
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCA  248 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~  248 (257)
                      |++|.++|+           ++++. +++.|||||.+++.+  |    ..+...++.+.|++. |-....+
T Consensus       176 V~~d~p~p~-----------~~l~~-~~~~LKpGG~lv~~~--P----~~~Qv~~~~~~l~~~gF~~i~~~  228 (266)
T d1o54a_         176 LFLDVPDPW-----------NYIDK-CWEALKGGGRFATVC--P----TTNQVQETLKKLQELPFIRIEVW  228 (266)
T ss_dssp             EEECCSCGG-----------GTHHH-HHHHEEEEEEEEEEE--S----SHHHHHHHHHHHHHSSEEEEEEE
T ss_pred             eEecCCCHH-----------HHHHH-HHhhcCCCCEEEEEe--C----cccHHHHHHHHHHHCCceeEEEE
Confidence            999988654           34677 789999999999875  3    234566777778764 6444444

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.38  E-value=7.5e-13  Score=110.02  Aligned_cols=108  Identities=19%  Similarity=0.295  Sum_probs=82.3

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      .++..+|||||||+|..+..++++  .+..+|+++|+++.+++.|++......   ...++++..+|..++   ..+.+|
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~---~~~~~~~~~~d~~~~---~~~~~d  110 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHV---EIKNAS  110 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC---CSSCEEEECSCTTTC---CCCSEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc---ccchhhhccchhhcc---ccccce
Confidence            456679999999999999999874  245699999999999999999876332   356888899987654   346789


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|++...-+.. .+   --...+++. +++.|+|||++++.
T Consensus       111 ~i~~~~~l~~~-~~---~d~~~~l~~-i~~~LkpgG~li~~  146 (225)
T d1im8a_         111 MVILNFTLQFL-PP---EDRIALLTK-IYEGLNPNGVLVLS  146 (225)
T ss_dssp             EEEEESCGGGS-CG---GGHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             eeEEeeecccc-Ch---hhHHHHHHH-HHHhCCCCceeecc
Confidence            98886543221 11   123478999 79999999998874

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.4e-13  Score=109.85  Aligned_cols=105  Identities=20%  Similarity=0.335  Sum_probs=87.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----CCC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-----~~~  174 (257)
                      .++++||+||+|+|..+..++.. +...+|+.+|++++..+.|++++...+   ...+++++.+|+.+.+..     ..+
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag---~~~~i~~~~Gda~e~l~~~~~~~~~~  134 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE---AEHKIDLRLKPALETLDELLAAGEAG  134 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC---ccceEEEEEeehhhcchhhhhhcccC
Confidence            47899999999999999999874 445799999999999999999997553   357999999999888754     257


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +||+|++|....         ...++++. +.+.|+|||++++.
T Consensus       135 ~fD~ifiD~dk~---------~y~~~~~~-~~~lL~~GGvii~D  168 (219)
T d2avda1         135 TFDVAVVDADKE---------NCSAYYER-CLQLLRPGGILAVL  168 (219)
T ss_dssp             CEEEEEECSCST---------THHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CccEEEEeCCHH---------HHHHHHHH-HHHHhcCCcEEEEe
Confidence            899999996421         13567788 68899999999984

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.38  E-value=1.1e-12  Score=109.89  Aligned_cols=105  Identities=17%  Similarity=0.151  Sum_probs=87.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC------C
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K  173 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~------~  173 (257)
                      .+|++||+||++.|..+..++.. +...+|+.+|++++..+.|++++...+   ..++++++++|+.+.+.+.      .
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g---~~~~i~~~~g~a~~~L~~l~~~~~~~  134 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG---VDHKIDFREGPALPVLDEMIKDEKNH  134 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHCGGGT
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc---cccceeeeehHHHHHHHHHHhccccC
Confidence            47899999999999999999864 556799999999999999999997553   3569999999999998652      4


Q ss_pred             CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++||+|++|+...         ...++|+. +.+.|+|||++++.
T Consensus       135 ~~fD~iFiDa~k~---------~y~~~~e~-~~~ll~~gGiii~D  169 (227)
T d1susa1         135 GSYDFIFVDADKD---------NYLNYHKR-LIDLVKVGGVIGYD  169 (227)
T ss_dssp             TCBSEEEECSCST---------THHHHHHH-HHHHBCTTCCEEEE
T ss_pred             CceeEEEeccchh---------hhHHHHHH-HHhhcCCCcEEEEc
Confidence            6899999997421         13578888 68899999999874

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.38  E-value=2.5e-13  Score=115.01  Aligned_cols=113  Identities=14%  Similarity=0.127  Sum_probs=82.8

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .++.++|||||||+|..+..+++.. ..+|++||+++.+++.|++.....+   ...++.++.+|+........++||+|
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~~~fD~V   97 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQDSYGRHMDLGKEFDVI   97 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSC---CSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcC---CCcceEEEEcchhhhcccccccceEE
Confidence            3567899999999999988888753 4689999999999999998765332   34689999999865433345789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++...-+....+  .-.-..+++. +++.|+|||++++..
T Consensus        98 ~~~~~l~~~~~~--~~~~~~~l~~-i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_          98 SSQFSFHYAFST--SESLDIAQRN-IARHLRPGGYFIMTV  134 (252)
T ss_dssp             EEESCGGGGGSS--HHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEcceeeecCCC--HHHHHHHHHH-HhceeCCCCEEEEEe
Confidence            986532210001  0011368888 799999999998753

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.1e-13  Score=110.91  Aligned_cols=104  Identities=24%  Similarity=0.283  Sum_probs=82.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|||||||+|..+..+++.. ..+|++||+++.+++.||+.+...+    .++++++++|+.++. ...++||+|+
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~----~~~~~f~~~d~~~~~-~~~~~fD~I~  132 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG----KRVRNYFCCGLQDFT-PEPDSYDVIW  132 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG----GGEEEEEECCGGGCC-CCSSCEEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccc----ccccccccccccccc-cccccccccc
Confidence            345789999999999999987653 3689999999999999999886542    357899999998853 3468999999


Q ss_pred             EcCCCCCCCCcccCCch---HHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t---~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-.       ++-.   .++++. +++.|+|||.+++.
T Consensus       133 ~~~~l~-------h~~~~~~~~~l~~-i~~~Lk~~G~~~i~  165 (222)
T d2ex4a1         133 IQWVIG-------HLTDQHLAEFLRR-CKGSLRPNGIIVIK  165 (222)
T ss_dssp             EESCGG-------GSCHHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             cccccc-------cchhhhhhhHHHH-HHHhcCCcceEEEE
Confidence            864321       2222   468898 79999999988874

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=2.4e-12  Score=110.51  Aligned_cols=145  Identities=17%  Similarity=0.214  Sum_probs=105.7

Q ss_pred             eeEEEEcCcccccCCCchhHHHHHHHHHh--hcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhh
Q 025141           69 GKALVIDGKLQSAEVDEFIYHESLVHPAL--LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (257)
Q Consensus        69 g~~L~ldG~~~~~~~~~~~y~e~l~~~~l--~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~  146 (257)
                      |..+++|..+....++.    |.++...+  .......+||++|||+|.++..+++.+ ..+|+++|++++.+++|+++.
T Consensus        79 ~~~f~v~~~vlIPRpeT----E~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~-~~~v~a~Dis~~Al~~A~~Na  153 (271)
T d1nv8a_          79 GLSFLVEEGVFVPRPET----EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFS-DAIVFATDVSSKAVEIARKNA  153 (271)
T ss_dssp             TEEEECCTTSCCCCTTH----HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHS-SCEEEEEESCHHHHHHHHHHH
T ss_pred             eeEEEEecCccCchhhh----hhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcc-cceeeechhhhhHHHHHHHHH
Confidence            66677777766665543    33332222  122345789999999999999888765 579999999999999999998


Q ss_pred             hhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCC--------CCcccCCch----HHHHHHHHcCcCCCCc
Q 025141          147 VVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE--------GGPCYKLYT----KSFYEFVVKPRLNPEG  213 (257)
Q Consensus       147 ~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~-~~~--------~~p~~~L~t----~ef~~~~~~~~L~pgG  213 (257)
                      ..++   ...++.++.+|..+.+....++||+|+++||- +..        ..|...|+.    .++++.++++.|+|||
T Consensus       154 ~~~~---~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G  230 (271)
T d1nv8a_         154 ERHG---VSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGK  230 (271)
T ss_dssp             HHTT---CTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTC
T ss_pred             HHcC---CCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCC
Confidence            7653   34688999999988877666899999999971 110        122222332    4788887789999999


Q ss_pred             EEEEecCC
Q 025141          214 IFVTQAGP  221 (257)
Q Consensus       214 il~~~~~~  221 (257)
                      ++++..+.
T Consensus       231 ~l~~Eig~  238 (271)
T d1nv8a_         231 IVLMEIGE  238 (271)
T ss_dssp             EEEEECCT
T ss_pred             EEEEEECH
Confidence            99998753

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.7e-12  Score=112.94  Aligned_cols=125  Identities=12%  Similarity=0.203  Sum_probs=91.5

Q ss_pred             cCCCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhcc-------CCCCCCCeEEEEcchHHHHh
Q 025141           99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNK-------EAFSDPRLELVINDARAELE  170 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~-------~~~~~~rv~i~~~Da~~~l~  170 (257)
                      -..++.+||++|||+|+++..+++. .+..+|+++|++++.++.|++++....       ......+++++++|..++..
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            3456789999999999999999885 344699999999999999999875211       01124689999999876543


Q ss_pred             c-CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          171 S-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       171 ~-~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      . ....||.|++|.++||.           ++.. ++++|||||++++..  |+    -.........|+..
T Consensus       175 ~~~~~~fD~V~LD~p~P~~-----------~l~~-~~~~LKpGG~lv~~~--P~----i~Qv~~~~~~l~~~  228 (324)
T d2b25a1         175 DIKSLTFDAVALDMLNPHV-----------TLPV-FYPHLKHGGVCAVYV--VN----ITQVIELLDGIRTC  228 (324)
T ss_dssp             ------EEEEEECSSSTTT-----------THHH-HGGGEEEEEEEEEEE--SS----HHHHHHHHHHHHHH
T ss_pred             ccCCCCcceEeecCcCHHH-----------HHHH-HHHhccCCCEEEEEe--CC----HHHHHHHHHHHHHc
Confidence            3 24679999999988762           3567 799999999999864  32    34456677777753

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.34  E-value=1.8e-12  Score=111.73  Aligned_cols=104  Identities=14%  Similarity=0.104  Sum_probs=81.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+|.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...     ..+++++.+|+.+.  ..+++||+|
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-----~~~~~f~~~d~~~~--~~~~~fD~v   98 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-----PYDSEFLEGDATEI--ELNDKYDIA   98 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-----SSEEEEEESCTTTC--CCSSCEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-----cccccccccccccc--cccCCceEE
Confidence            5788999999999999999988633 468999999999999999987643     24789999998763  234679999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ++...-.....      -..+++. ++++|||||.+++.
T Consensus        99 ~~~~~l~~~~d------~~~~l~~-~~~~LkpgG~lii~  130 (281)
T d2gh1a1          99 ICHAFLLHMTT------PETMLQK-MIHSVKKGGKIICF  130 (281)
T ss_dssp             EEESCGGGCSS------HHHHHHH-HHHTEEEEEEEEEE
T ss_pred             EEehhhhcCCC------HHHHHHH-HHHHcCcCcEEEEE
Confidence            98865322111      2468888 79999999988764

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.32  E-value=8.6e-13  Score=112.28  Aligned_cols=102  Identities=16%  Similarity=0.251  Sum_probs=80.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ....+|||+|||+|.++..++... ..+|++||+++.+++.||+.+..      .++++++++|+.++- ..+++||+|+
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~------~~~~~~~~~d~~~~~-~~~~~fD~I~  163 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG------MPVGKFILASMETAT-LPPNTYDLIV  163 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT------SSEEEEEESCGGGCC-CCSSCEEEEE
T ss_pred             CCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhccccc------cccceeEEccccccc-cCCCccceEE
Confidence            456899999999999999877642 25899999999999999988652      357899999987752 3357899999


Q ss_pred             EcCCCCCCCCcccCCch---HHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t---~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-       .++..   .++++. +++.|+|||.+++.
T Consensus       164 ~~~vl-------~hl~d~d~~~~l~~-~~~~LkpgG~iii~  196 (254)
T d1xtpa_         164 IQWTA-------IYLTDADFVKFFKH-CQQALTPNGYIFFK  196 (254)
T ss_dssp             EESCG-------GGSCHHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             eeccc-------cccchhhhHHHHHH-HHHhcCCCcEEEEE
Confidence            87542       23322   478999 79999999999874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.32  E-value=2.2e-12  Score=105.08  Aligned_cols=106  Identities=13%  Similarity=0.103  Sum_probs=82.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ..+.+|||||||+|..+..+++. + .+|++||+++.+++.+++.....    .-+++++...|+.+..  .+++||+|+
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~-g-~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~d~~~~~--~~~~fD~I~  100 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAAN-G-YDVTAWDKNPASMANLERIKAAE----GLDNLQTDLVDLNTLT--FDGEYDFIL  100 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT----TCTTEEEEECCTTTCC--CCCCEEEEE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHH-h-hhhccccCcHHHHHHHHHHhhhc----cccchhhhheeccccc--ccccccEEE
Confidence            35679999999999999999986 3 58999999999999999887644    2367999999977653  357899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +...-..  -|  .-....+++. ++++|+|||++++..
T Consensus       101 ~~~~~~~--~~--~~~~~~~l~~-~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         101 STVVMMF--LE--AQTIPGLIAN-MQRCTKPGGYNLIVA  134 (198)
T ss_dssp             EESCGGG--SC--TTHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             Eeeeeec--CC--HHHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            8754221  11  1123468888 799999999888753

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.32  E-value=8.8e-12  Score=100.93  Aligned_cols=121  Identities=18%  Similarity=0.219  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH
Q 025141           88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA  167 (257)
Q Consensus        88 y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~  167 (257)
                      -.|++.. .+....+.++|||++||+|+++.+++.+ +..+|+.||.|+++++.+++++...+   ...+++++.+|+.+
T Consensus        28 vrealFn-~l~~~~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~---~~~~~~i~~~D~~~  102 (182)
T d2fhpa1          28 VKESIFN-MIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITK---EPEKFEVRKMDANR  102 (182)
T ss_dssp             HHHHHHH-HHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHH
T ss_pred             HHHHHHH-HHHHhcCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhh---cccccccccccchh
Confidence            3455542 2222346789999999999999999996 56799999999999999999987543   24589999999999


Q ss_pred             HHhc---CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHH-cCcCCCCcEEEEecC
Q 025141          168 ELES---RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAG  220 (257)
Q Consensus       168 ~l~~---~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGil~~~~~  220 (257)
                      +++.   ...+||+|++|||-..      ..+ .+.+..+. ...|+|+|+++++..
T Consensus       103 ~l~~~~~~~~~fDlIflDPPY~~------~~~-~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         103 ALEQFYEEKLQFDLVLLDPPYAK------QEI-VSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             HHHHHHHTTCCEEEEEECCCGGG------CCH-HHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             hhhhhcccCCCcceEEechhhhh------hHH-HHHHHHHHHCCCCCCCEEEEEEcC
Confidence            9865   4568999999986211      122 34445412 357999999998753

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=4.7e-12  Score=109.25  Aligned_cols=105  Identities=16%  Similarity=0.209  Sum_probs=82.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++.+|||||||.|+++..++++.+ .+|++|+++++.++.|++.....+   ...++.+...|.+++    +++||.|+
T Consensus        51 ~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~---l~~~~~~~~~d~~~~----~~~fD~i~  122 (280)
T d2fk8a1          51 KPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASID---TNRSRQVLLQGWEDF----AEPVDRIV  122 (280)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhc---cccchhhhhhhhhhh----ccchhhhh
Confidence            4568999999999999999988765 599999999999999999875432   346788888886543    57899988


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +--. .+.  +.   -.-..||+. +++.|||||+++++.
T Consensus       123 si~~~eh~--~~---~~~~~~f~~-i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         123 SIEAFEHF--GH---ENYDDFFKR-CFNIMPADGRMTVQS  156 (280)
T ss_dssp             EESCGGGT--CG---GGHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             HhhHHHHh--hh---hhHHHHHHH-HHhccCCCceEEEEE
Confidence            7643 222  11   123689999 799999999999875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.30  E-value=8.9e-12  Score=104.54  Aligned_cols=138  Identities=16%  Similarity=0.133  Sum_probs=98.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC--ceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE--SYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~--~fDv  178 (257)
                      .+..+||+||||+|.++..+++..+..+|++||++|.+++.+++...      ..+++..+.+|++........  .+|+
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~------~~~ni~~i~~d~~~~~~~~~~~~~v~~  146 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA------ERENIIPILGDANKPQEYANIVEKVDV  146 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT------TCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh------hhcccceEEEeeccCcccccccceeEE
Confidence            34579999999999999999997556799999999999999988643      346888899998877654443  4555


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec--CCCCC-CCChHHHHHHHHHHhhh-CCceEEEeecCc
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA--GPAGI-FSHTEVFSCIYNTLRQV-FKCGCCALFSSY  253 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~--~~~~~-~~~~~~~~~~~~~l~~~-F~~v~~~~~~~~  253 (257)
                      |+.+...+.        ....++.. +++.|||||.+++..  .+... ......+.+..+.|++. |..+.....++|
T Consensus       147 i~~~~~~~~--------~~~~~l~~-~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~py  216 (230)
T d1g8sa_         147 IYEDVAQPN--------QAEILIKN-AKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPF  216 (230)
T ss_dssp             EEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTTT
T ss_pred             eeccccchH--------HHHHHHHH-HHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence            666654321        13567888 799999999877642  11111 12245667777888876 877776666655

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.29  E-value=1.8e-12  Score=110.87  Aligned_cols=102  Identities=18%  Similarity=0.099  Sum_probs=84.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.++|||+|||+|.++..++++. .++|+++|+||..++.+++++..++   -..+++++.+|++++..  ...||.|+
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~---l~~~v~~~~~D~~~~~~--~~~~D~Ii  179 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNK---VEDRMSAYNMDNRDFPG--ENIADRIL  179 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred             CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhC---CCceEEEEEcchHHhcc--CCCCCEEE
Confidence            567899999999999999999874 4699999999999999999998774   35689999999998764  36799999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++++..          +.+|+.. +.+.|+|||++.++.
T Consensus       180 ~~~p~~----------~~~~l~~-a~~~l~~gG~lh~~~  207 (260)
T d2frna1         180 MGYVVR----------THEFIPK-ALSIAKDGAIIHYHN  207 (260)
T ss_dssp             ECCCSS----------GGGGHHH-HHHHEEEEEEEEEEE
T ss_pred             ECCCCc----------hHHHHHH-HHhhcCCCCEEEEEe
Confidence            986521          2356676 677899999986653

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.29  E-value=5.4e-12  Score=105.46  Aligned_cols=98  Identities=20%  Similarity=0.306  Sum_probs=77.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+||+||||+|.++..+++..  .+|+++|++++.++.|++++..      ..+++++++|+...... ..+||+|+
T Consensus        69 ~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~------~~nv~~~~~d~~~g~~~-~~pfD~Ii  139 (224)
T d1vbfa_          69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSY------YNNIKLILGDGTLGYEE-EKPYDRVV  139 (224)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT------CSSEEEEESCGGGCCGG-GCCEEEEE
T ss_pred             cccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhc------ccccccccCchhhcchh-hhhHHHHH
Confidence            466899999999999999888863  6999999999999999987652      36899999998775433 46799999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +...-+.  .|          .. +.+.|+|||++++-.+
T Consensus       140 v~~a~~~--ip----------~~-l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         140 VWATAPT--LL----------CK-PYEQLKEGGIMILPIG  166 (224)
T ss_dssp             ESSBBSS--CC----------HH-HHHTEEEEEEEEEEEC
T ss_pred             hhcchhh--hh----------HH-HHHhcCCCCEEEEEEc
Confidence            9865322  22          23 4567999999988654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=1.1e-11  Score=99.26  Aligned_cols=105  Identities=16%  Similarity=0.192  Sum_probs=75.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH---hcCCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ESRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l---~~~~~~fD  177 (257)
                      +++.+|||+|||+|+++.+++.. + .++++||+|+++++.+++++..++   .+.  +++..|+..++   ....++||
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~-g-a~vv~vD~~~~a~~~~~~N~~~~~---~~~--~v~~~~~d~~~~~~~~~~~~fD  112 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASE-G-WEAVLVEKDPEAVRLLKENVRRTG---LGA--RVVALPVEVFLPEAKAQGERFT  112 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHT-T-CEEEEECCCHHHHHHHHHHHHHHT---CCC--EEECSCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEeccccchhhhhhhhc-c-chhhhcccCHHHHhhhhHHHHhhc---ccc--ceeeeehhcccccccccCCccc
Confidence            57789999999999999998885 4 489999999999999999987653   123  45555655544   33557899


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHH-cCcCCCCcEEEEecC
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAG  220 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGil~~~~~  220 (257)
                      +|++|||-..  +    +.  +.+..++ +..|+|||++++...
T Consensus       113 ~If~DPPY~~--~----~~--~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         113 VAFMAPPYAM--D----LA--ALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEEECCCTTS--C----TT--HHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             eeEEcccccc--C----HH--HHHHHHHHcCCcCCCeEEEEEec
Confidence            9999986322  1    11  1222212 468999999998753

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=2.8e-12  Score=106.66  Aligned_cols=100  Identities=18%  Similarity=0.288  Sum_probs=75.3

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+++.+|||+|||+|..+..+++. + .+|+++|+++.+++.|+++..        +  .++.+|+.+ +....++||+|
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~l~~a~~~~~--------~--~~~~~~~~~-l~~~~~~fD~i  106 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER-G-FEVVLVDPSKEMLEVAREKGV--------K--NVVEAKAED-LPFPSGAFEAV  106 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT-T-CEEEEEESCHHHHHHHHHHTC--------S--CEEECCTTS-CCSCTTCEEEE
T ss_pred             cCCCCEEEEECCCCchhccccccc-c-eEEEEeecccccccccccccc--------c--ccccccccc-cccccccccce
Confidence            356789999999999999999885 3 589999999999999998632        1  256778766 33445889999


Q ss_pred             EEcC-CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++-. .-.+...      ..++++. +.++|||||++++..
T Consensus       107 i~~~~~~~~~~d------~~~~l~~-i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         107 LALGDVLSYVEN------KDKAFSE-IRRVLVPDGLLIATV  140 (246)
T ss_dssp             EECSSHHHHCSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             eeecchhhhhhh------HHHHHHH-HHhhcCcCcEEEEEE
Confidence            8643 2111001      2468888 799999999999864

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=6.4e-12  Score=104.15  Aligned_cols=102  Identities=20%  Similarity=0.200  Sum_probs=78.9

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ..+..+||+||||+|..+..+++. .+..+|+++|+++++++.|++++...    ...++.++++|+.+.... .++||+
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~----~~~n~~~~~~d~~~~~~~-~~~fD~  147 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL----GIENVIFVCGDGYYGVPE-FSPYDV  147 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEESCGGGCCGG-GCCEEE
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh----cccccccccCchHHcccc-ccchhh
Confidence            356789999999999999988875 34468999999999999999998754    246889999998765432 467999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+++..-+.  -|          +. +.+.|||||++++-.
T Consensus       148 I~~~~~~~~--~p----------~~-l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         148 IFVTVGVDE--VP----------ET-WFTQLKEGGRVIVPI  175 (213)
T ss_dssp             EEECSBBSC--CC----------HH-HHHHEEEEEEEEEEB
T ss_pred             hhhhccHHH--hH----------HH-HHHhcCCCcEEEEEE
Confidence            999865322  22          23 456799999998854

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=1.3e-11  Score=107.00  Aligned_cols=111  Identities=18%  Similarity=0.125  Sum_probs=83.3

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ..+..+|||||||.|+++.++++..+ .+|++++++++.++.+++.....+   ...++++...|.+    ..+++||.|
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~---l~~~v~~~~~d~~----~~~~~fD~i  130 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD---SPRRKEVRIQGWE----EFDEPVDRI  130 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSC---CSSCEEEEECCGG----GCCCCCSEE
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhc---cchhhhhhhhccc----ccccccceE
Confidence            35678999999999999999987655 599999999999999999876432   3468999999964    346889998


Q ss_pred             EEcC-CCCCCCCccc--CCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDL-ADPIEGGPCY--KLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~-~~~~~~~p~~--~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ++-- +.+.......  .=.-+.||+. +++.|||||.++++.
T Consensus       131 ~sie~~eH~~~~~~~~~~~~~~~~f~~-i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         131 VSLGAFEHFADGAGDAGFERYDTFFKK-FYNLTPDDGRMLLHT  172 (291)
T ss_dssp             EEESCGGGTTCCSSCCSTTHHHHHHHH-HHHTSCTTCEEEEEE
T ss_pred             eechhHHhcchhhhhhHHHHHHHHHHH-HHHhCCCCCceEEEE
Confidence            8754 3332100000  0112589999 799999999999875

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.27  E-value=5.2e-12  Score=104.98  Aligned_cols=99  Identities=12%  Similarity=0.172  Sum_probs=77.2

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .++++||+||||+|..++.+++. + .+|++||+++++++.|++.+.        .+++++.+|+.++.  .+++||+|+
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~-g-~~v~giD~s~~~i~~a~~~~~--------~~~~~~~~~~~~~~--~~~~fD~I~   86 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEH-F-NDITCVEASEEAISHAQGRLK--------DGITYIHSRFEDAQ--LPRRYDNIV   86 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTT-C-SCEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGGCC--CSSCEEEEE
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHc-C-CeEEEEeCcHHHhhhhhcccc--------cccccccccccccc--ccccccccc
Confidence            46789999999999999998875 3 589999999999999998642        36899999987653  357899998


Q ss_pred             EcCCCCCCCCcccCCch-HHHHHHHHc-CcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPCYKLYT-KSFYEFVVK-PRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t-~ef~~~~~~-~~L~pgGil~~~~  219 (257)
                      +-..-       .++.. ..++.. ++ ++|+|||.+++..
T Consensus        87 ~~~vl-------eh~~d~~~~l~~-i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          87 LTHVL-------EHIDDPVALLKR-INDDWLAEGGRLFLVC  119 (225)
T ss_dssp             EESCG-------GGCSSHHHHHHH-HHHTTEEEEEEEEEEE
T ss_pred             cccee-------EecCCHHHHHHH-HHHHhcCCCceEEEEe
Confidence            85431       12222 467777 66 7899999998754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=1.4e-11  Score=102.28  Aligned_cols=106  Identities=9%  Similarity=0.165  Sum_probs=83.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----CCC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-----~~~  174 (257)
                      .+|++||+||+|.|..+..+++. ++..+|+++|++++..+.|++++...+   ...+++++.+|+.+.+..     ..+
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g---l~~~i~l~~Gd~~e~l~~l~~~~~~~  131 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG---LQDKVTILNGASQDLIPQLKKKYDVD  131 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC---CCccceeeeccccccccchhhccccc
Confidence            47889999999999999999874 445799999999999999999987543   346899999999998764     236


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchH-HHHHHHHcCcCCCCcEEEEe
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTK-SFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~-ef~~~~~~~~L~pgGil~~~  218 (257)
                      +||+|++|...        ..+.. ..+.. ..+.|+|||++++.
T Consensus       132 ~~D~ifiD~~~--------~~~~~~~~l~~-~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         132 TLDMVFLDHWK--------DRYLPDTLLLE-KCGLLRKGTVLLAD  167 (214)
T ss_dssp             CEEEEEECSCG--------GGHHHHHHHHH-HTTCEEEEEEEEES
T ss_pred             ccceeeecccc--------cccccHHHHHH-HhCccCCCcEEEEe
Confidence            79999999531        11112 23444 47899999998874

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=9e-12  Score=106.53  Aligned_cols=97  Identities=19%  Similarity=0.276  Sum_probs=77.5

Q ss_pred             cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ...++.+|||||||+|..+..+++..+..++++||+++.+++.|++..         ++++++.+|+.+. .-.++.||+
T Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---------~~~~~~~~d~~~l-~~~~~sfD~  150 (268)
T d1p91a_          81 LDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRL-PFSDTSMDA  150 (268)
T ss_dssp             SCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSC-SBCTTCEEE
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---------ccccceeeehhhc-cCCCCCEEE
Confidence            345678999999999999999998755579999999999999998752         5789999998763 345688999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |++...      |. +      +++ ++++|||||++++..
T Consensus       151 v~~~~~------~~-~------~~e-~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         151 IIRIYA------PC-K------AEE-LARVVKPGGWVITAT  177 (268)
T ss_dssp             EEEESC------CC-C------HHH-HHHHEEEEEEEEEEE
T ss_pred             EeecCC------HH-H------HHH-HHHHhCCCcEEEEEe
Confidence            997532      21 1      456 688999999999865

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.8e-12  Score=105.27  Aligned_cols=107  Identities=24%  Similarity=0.359  Sum_probs=79.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhcc-CCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNK-EAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~-~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+..+||+||||+|..+..+++. .+..+|+++|+++++++.|++++...+ ......+++++.+|+..... ....||+
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~-~~~~fD~  153 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDA  153 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc-hhhhhhh
Confidence            34579999999999998887774 334699999999999999999875321 00123688999999876543 2468999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      |+++...+.  .|          +. +.+.|||||++++-.+.
T Consensus       154 I~~~~~~~~--ip----------~~-l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         154 IHVGAAAPV--VP----------QA-LIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             EEECSBBSS--CC----------HH-HHHTEEEEEEEEEEESC
T ss_pred             hhhhcchhh--cC----------HH-HHhhcCCCcEEEEEEcc
Confidence            999875332  22          23 46689999999986543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.24  E-value=6.9e-12  Score=106.21  Aligned_cols=106  Identities=21%  Similarity=0.254  Sum_probs=80.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ...++|||||||+|..+..+++..+..+++++|+ |++++.+++++...+   ...|++++.+|.++   .....||+|+
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~rv~~~~~D~~~---~~~~~~D~v~  151 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG---LSDRVDVVEGDFFE---PLPRKADAII  151 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT---CTTTEEEEECCTTS---CCSSCEEEEE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh---cccchhhccccchh---hcccchhhee
Confidence            4568999999999999999998766679999998 789999999876442   35799999999754   3346799999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +...-+.  -+  .-....++++ ++++|||||.+++.
T Consensus       152 ~~~vlh~--~~--d~~~~~~L~~-~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         152 LSFVLLN--WP--DHDAVRILTR-CAEALEPGGRILIH  184 (253)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             ecccccc--CC--chhhHHHHHH-HHHhcCCCcEEEEE
Confidence            7643211  01  0112467898 79999999988774

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.24  E-value=2.4e-12  Score=103.27  Aligned_cols=117  Identities=10%  Similarity=-0.011  Sum_probs=82.5

Q ss_pred             HHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC--------CCCCCCeEEEEcchH
Q 025141           95 PALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE--------AFSDPRLELVINDAR  166 (257)
Q Consensus        95 ~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~--------~~~~~rv~i~~~Da~  166 (257)
                      ++.+..+++.+|||+|||+|..+..++++ + .+||+||+++.+++.|++..+....        .......+++.+|..
T Consensus        13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~-G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ-G-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHH-C-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHHcCCCCCCEEEEecCcCCHHHHHHHHc-C-CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            34444567789999999999999999986 4 5999999999999999997642110        012456678888876


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       167 ~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +.-......||+|+....-... .+   -....+++. +++.|||||.+++.
T Consensus        91 ~l~~~~~~~~D~i~~~~~l~~l-~~---~~~~~~~~~-i~~~LkpgG~l~l~  137 (201)
T d1pjza_          91 ALTARDIGHCAAFYDRAAMIAL-PA---DMRERYVQH-LEALMPQACSGLLI  137 (201)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGS-CH---HHHHHHHHH-HHHHSCSEEEEEEE
T ss_pred             ccccccccceeEEEEEeeeEec-ch---hhhHHHHHH-HHHhcCCCcEEEEE
Confidence            6433334679999876442110 11   112467788 79999999987653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=3e-11  Score=104.34  Aligned_cols=105  Identities=14%  Similarity=0.200  Sum_probs=82.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|||||||.|+++..+++..+ ++|+++.++++.++.|++.....+   ..+++++..+|.++.    +++||.|+
T Consensus        61 ~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g---~~~~v~~~~~d~~~~----~~~fD~i~  132 (285)
T d1kpga_          61 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSE---NLRSKRVLLAGWEQF----DEPVDRIV  132 (285)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCC---CCSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhh---hhhhhHHHHhhhhcc----ccccccee
Confidence            4568999999999999999888765 699999999999999999865432   457999999997543    57899887


Q ss_pred             EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +--. .+.  +   +-.-..|++. +++.|+|||.++++.
T Consensus       133 si~~~eh~--~---~~~~~~~~~~-~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         133 SIGAFEHF--G---HERYDAFFSL-AHRLLPADGVMLLHT  166 (285)
T ss_dssp             EESCGGGT--C---TTTHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             eehhhhhc--C---chhHHHHHHH-HHhhcCCCCcEEEEE
Confidence            7532 222  1   1123578999 799999999999865

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.21  E-value=5.8e-11  Score=99.29  Aligned_cols=138  Identities=17%  Similarity=0.188  Sum_probs=98.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--cCCCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~--~~~~~fD  177 (257)
                      .+..+||++|||+|.++..+++. .+..+|++||+++.+++.+++....      .+++..+..|++..-.  .....+|
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~------~~~~~~i~~d~~~~~~~~~~~~~vD  145 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE------RRNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS------CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh------cCCceEEEEECCCcccccccccceE
Confidence            34689999999999999999986 3457999999999999999987642      3567778888765432  2347899


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe--cCCCCCCCC-hHHHHHHHHHHhhhCCceEEEeecCc
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ--AGPAGIFSH-TEVFSCIYNTLRQVFKCGCCALFSSY  253 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~--~~~~~~~~~-~~~~~~~~~~l~~~F~~v~~~~~~~~  253 (257)
                      +|+.|.+.+.        ....+++. +++.|+|||.+++-  ..+...... ...++.+.+.+++.|.-+......+|
T Consensus       146 ~i~~d~~~~~--------~~~~~l~~-~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~i~L~p~  215 (227)
T d1g8aa_         146 VIFEDVAQPT--------QAKILIDN-AEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLEPY  215 (227)
T ss_dssp             EEEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTT
T ss_pred             EEEEEccccc--------hHHHHHHH-HHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEEEcCCCC
Confidence            9999976432        23568888 79999999988763  222211122 34455555666667877666655554

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.19  E-value=5.3e-11  Score=96.18  Aligned_cols=149  Identities=17%  Similarity=0.172  Sum_probs=97.6

Q ss_pred             cEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHH
Q 025141           59 DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEV  138 (257)
Q Consensus        59 ~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~v  138 (257)
                      .++|+-....|+.|..-.... ..|....-.|++... +...-...+|||+.+|+|+++.+++.+ ++.+|+.||.|+..
T Consensus         2 ~mrIi~G~~kg~~l~~~~~~~-~RPt~~~vrealFn~-l~~~~~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a   78 (183)
T d2ifta1           2 EVRIIAGLWRGRKLPVLNSEG-LRPTGDRVKETLFNW-LMPYIHQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTV   78 (183)
T ss_dssp             EEECCSSTTTTCEEECC----------CHHHHHHHHH-HHHHHTTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHH
T ss_pred             ceEEEccccCCCEecCCCCCC-cCcCcHHHHHHHHHH-hhhhcccceEeecccCccceeeeeeee-cceeeEEeecccch
Confidence            455555555566664321111 112212233444322 111125679999999999999999985 67899999999999


Q ss_pred             HHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CCceeEEEEcCCCCCCCCcccCCchHHHHHHHH-cCcCCCCcEE
Q 025141          139 VEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIF  215 (257)
Q Consensus       139 i~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGil  215 (257)
                      ++..++++...+  ..+....++..|+.++++..  ..+||+|++|||-..      .++ .+.+..+. ...|+++|++
T Consensus        79 ~~~ik~Ni~~l~--~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~~------~~~-~~~l~~l~~~~~L~~~~li  149 (183)
T d2ifta1          79 ANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHF------NLA-EQAISLLCENNWLKPNALI  149 (183)
T ss_dssp             HHHHHHHHHHTT--CCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSS------CHH-HHHHHHHHHTTCEEEEEEE
T ss_pred             hhhHhhHHhhhc--ccccccccccccccccccccccCCcccEEEechhHhh------hhH-HHHHHHHHHhCCcCCCcEE
Confidence            999999987432  23557889999999998754  457999999987322      122 23344311 4689999999


Q ss_pred             EEec
Q 025141          216 VTQA  219 (257)
Q Consensus       216 ~~~~  219 (257)
                      +++.
T Consensus       150 iiE~  153 (183)
T d2ifta1         150 YVET  153 (183)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=5.3e-11  Score=104.44  Aligned_cols=106  Identities=16%  Similarity=0.223  Sum_probs=80.1

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +.++|||||||+|.++..+++. +..+|+++|.++ +++.|++....++   ...+++++.+|..+. ....++||+|++
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~---~~~~i~~i~~~~~~l-~~~~~~~D~i~s  111 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNG---FSDKITLLRGKLEDV-HLPFPKVDIIIS  111 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTT---CTTTEEEEESCTTTS-CCSSSCEEEEEE
T ss_pred             CcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhC---ccccceEEEeehhhc-cCcccceeEEEE
Confidence            5689999999999999998886 457999999997 5678887766443   457999999998764 334578999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      .......  . ....-..++.. .++.|||||+++-
T Consensus       112 e~~~~~~--~-~e~~~~~~~~a-~~r~LkpgG~iiP  143 (328)
T d1g6q1_         112 EWMGYFL--L-YESMMDTVLYA-RDHYLVEGGLIFP  143 (328)
T ss_dssp             CCCBTTB--S-TTCCHHHHHHH-HHHHEEEEEEEES
T ss_pred             Eecceee--c-cchhHHHHHHH-HHhccCCCeEEEe
Confidence            8764321  1 12233456666 6889999999863

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.18  E-value=3.4e-11  Score=99.94  Aligned_cols=101  Identities=26%  Similarity=0.311  Sum_probs=79.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+||+||+|+|..+..+++..+ .+|+++|+++.+++.|++.+...    .-.++.++.+|+.+-.. ...+||.|+
T Consensus        77 ~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~----g~~nv~~~~gd~~~g~~-~~~pfD~Ii  150 (215)
T d1jg1a_          77 KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERA----GVKNVHVILGDGSKGFP-PKAPYDVII  150 (215)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHT----TCCSEEEEESCGGGCCG-GGCCEEEEE
T ss_pred             CccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHc----CCceeEEEECccccCCc-ccCcceeEE
Confidence            4568999999999999998887644 57999999999999999998754    24799999999977543 257899999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +...-+.  .|          .. +.+.|+|||++++-.+
T Consensus       151 v~~a~~~--ip----------~~-l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         151 VTAGAPK--IP----------EP-LIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             ECSBBSS--CC----------HH-HHHTEEEEEEEEEEEC
T ss_pred             eeccccc--CC----------HH-HHHhcCCCCEEEEEEc
Confidence            9865332  23          12 3457999999998654

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.6e-11  Score=103.42  Aligned_cols=119  Identities=17%  Similarity=0.152  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH
Q 025141           87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR  166 (257)
Q Consensus        87 ~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~  166 (257)
                      .|.+++....-  ..+.++|||||||+|.++..+++. +..+|+++|.++.+....+ ....++   ...+++++.+|..
T Consensus        22 ~y~~ai~~~~~--~~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~a~~-~~~~~~---~~~~i~~~~~~~~   94 (311)
T d2fyta1          22 SYRDFIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMD-IIRLNK---LEDTITLIKGKIE   94 (311)
T ss_dssp             HHHHHHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHH-HHHHTT---CTTTEEEEESCTT
T ss_pred             HHHHHHHhccc--cCCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHHHHH-HHHHhC---CCccceEEEeeHH
Confidence            35565543211  135789999999999999999986 4579999999998865444 333322   3579999999987


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       167 ~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +. ....++||+|+++......  . ....-..++.. ..+.|+|||+++.
T Consensus        95 ~l-~~~~~~~D~Ivse~~~~~~--~-~e~~~~~~~~a-~~~~Lkp~G~iip  140 (311)
T d2fyta1          95 EV-HLPVEKVDVIISEWMGYFL--L-FESMLDSVLYA-KNKYLAKGGSVYP  140 (311)
T ss_dssp             TS-CCSCSCEEEEEECCCBTTB--T-TTCHHHHHHHH-HHHHEEEEEEEES
T ss_pred             Hh-cCccccceEEEEeeeeeec--c-cccccHHHHHH-HHhcCCCCcEEec
Confidence            74 3445799999998764321  1 12223455555 5788999998874

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.7e-11  Score=98.40  Aligned_cols=111  Identities=13%  Similarity=-0.003  Sum_probs=83.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc-------------CCCCCCCeEEEEcchHH
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-------------EAFSDPRLELVINDARA  167 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-------------~~~~~~rv~i~~~Da~~  167 (257)
                      +++.+||++|||.|..+..+++. + .+||+||+++.+++.|++..+...             ......+++++.+|..+
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~-G-~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADR-G-HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT-T-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            56789999999999999999985 4 589999999999999988654210             00134689999999988


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ........||+|+.-..-... .|   -....+++. +.++|+|||.+++.
T Consensus       122 l~~~~~~~fd~i~~~~~l~~~-~~---~~r~~~~~~-~~~~LkpgG~~~l~  167 (229)
T d2bzga1         122 LPRTNIGKFDMIWDRGALVAI-NP---GDRKCYADT-MFSLLGKKFQYLLC  167 (229)
T ss_dssp             GGGSCCCCEEEEEESSSTTTS-CG---GGHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             ccccccCceeEEEEEEEEEec-cc---hhhHHHHHH-HHhhcCCcceEEEE
Confidence            776667899999876543221 22   123567788 79999999976543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=5.4e-11  Score=103.91  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=79.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      +.+.|||||||+|.++..+++. +..+|++||.++.+ ..+++....++   ...+++++.+|..+. ....++||+|++
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~~-~~a~~~~~~n~---~~~~v~~~~~~~~~~-~~~~~~~D~ivs  106 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSIS-DYAVKIVKANK---LDHVVTIIKGKVEEV-ELPVEKVDIIIS  106 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTH-HHHHHHHHHTT---CTTTEEEEESCTTTC-CCSSSCEEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHHH-hhhhhHHHHhC---CccccceEeccHHHc-ccccceeEEEee
Confidence            5689999999999999998885 55799999999865 55566554432   356899999998774 344578999999


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      +.....   ......-.+++.. +++.|+|||+++.
T Consensus       107 ~~~~~~---l~~e~~~~~~l~~-~~r~Lkp~G~iiP  138 (316)
T d1oria_         107 EWMGYC---LFYESMLNTVLHA-RDKWLAPDGLIFP  138 (316)
T ss_dssp             CCCBBT---BTBTCCHHHHHHH-HHHHEEEEEEEES
T ss_pred             eeeeee---eccHHHHHHHHHH-HHhcCCCCeEEEe
Confidence            876432   1122234567777 6899999998874

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.15  E-value=1.1e-10  Score=95.67  Aligned_cols=75  Identities=19%  Similarity=0.239  Sum_probs=63.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      -++++|||+|||+|.++.+++.. +..+|++||+|+..++.+++++...     ..+.+++.+|+.++    .++||+|+
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~-----~~~~~~~~~d~~~~----~~~fD~Vi  114 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEF-----KGKFKVFIGDVSEF----NSRVDIVI  114 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGG-----TTSEEEEESCGGGC----CCCCSEEE
T ss_pred             CCCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHc-----CCCceEEECchhhh----CCcCcEEE
Confidence            46789999999999999988875 4569999999999999999998754     24789999998664    57899999


Q ss_pred             EcCCC
Q 025141          181 GDLAD  185 (257)
Q Consensus       181 ~D~~~  185 (257)
                      +|+|-
T Consensus       115 ~nPP~  119 (201)
T d1wy7a1         115 MNPPF  119 (201)
T ss_dssp             ECCCC
T ss_pred             EcCcc
Confidence            99974

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.15  E-value=9.1e-11  Score=95.99  Aligned_cols=95  Identities=19%  Similarity=0.169  Sum_probs=68.8

Q ss_pred             HHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh
Q 025141           91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE  170 (257)
Q Consensus        91 ~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~  170 (257)
                      ++..+...-.-.+++|||+|||+|.++..++.. +..+|++||+|+..++.|+++.         ++++++.+|..+   
T Consensus        37 ~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~---------~~~~~~~~D~~~---  103 (197)
T d1ne2a_          37 FLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNC---------GGVNFMVADVSE---  103 (197)
T ss_dssp             HHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHC---------TTSEEEECCGGG---
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHcc---------ccccEEEEehhh---
Confidence            333333433456899999999999999888876 4578999999999999999874         467899999754   


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCchHHHHHH
Q 025141          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEF  203 (257)
Q Consensus       171 ~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~  203 (257)
                       .+++||+|++|+|-..    ........|++.
T Consensus       104 -l~~~fD~Vi~NPPfg~----~~~~~D~~fl~~  131 (197)
T d1ne2a_         104 -ISGKYDTWIMNPPFGS----VVKHSDRAFIDK  131 (197)
T ss_dssp             -CCCCEEEEEECCCC-----------CHHHHHH
T ss_pred             -cCCcceEEEeCcccch----hhhhchHHHHHH
Confidence             3578999999987321    112234566665

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=3.2e-11  Score=103.88  Aligned_cols=115  Identities=8%  Similarity=0.059  Sum_probs=76.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDv  178 (257)
                      ...++||+||||+|..+..+++. + .+|++||+++.+++.|++............+..+...|....-..  ..++||+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~-g-~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~  132 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEE-G-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  132 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHc-C-CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence            35679999999999999999985 4 589999999999999998765322100112334555555443222  3478999


Q ss_pred             EEEcC--CCCCCCCcccCC-chHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDL--ADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~--~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |++-.  ..... .+.... -...+++. ++++|||||++++..
T Consensus       133 v~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         133 VICLGNSFAHLP-DSKGDQSEHRLALKN-IASMVRPGGLLVIDH  174 (292)
T ss_dssp             EEECSSCGGGSC-CTTSSSHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEEecCchhhcC-CcccChHHHHHHHHH-HHHHcCcCcEEEEee
Confidence            98743  21110 110001 12468999 799999999999854

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.11  E-value=8.4e-11  Score=99.78  Aligned_cols=105  Identities=12%  Similarity=0.120  Sum_probs=80.6

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ...++|||||||+|..+..+++..+..+++++|+ |++++.+++++...+   ..+|++++.+|.++   ..+..||+|+
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~---~~~ri~~~~~d~~~---~~p~~~D~v~  152 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG---LADRVTVAEGDFFK---PLPVTADVVL  152 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTS---CCSCCEEEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC---Ccceeeeeeeeccc---cccccchhhh
Confidence            3458999999999999999999766679999998 889999999876432   35799999999654   3345799998


Q ss_pred             EcCCC-CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +-..- .+  ..   -....++++ +++.|+|||.+++.
T Consensus       153 ~~~vLh~~--~d---~~~~~lL~~-i~~~LkpgG~llI~  185 (256)
T d1qzza2         153 LSFVLLNW--SD---EDALTILRG-CVRALEPGGRLLVL  185 (256)
T ss_dssp             EESCGGGS--CH---HHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             cccccccc--Cc---HHHHHHHHH-HHhhcCCcceeEEE
Confidence            86432 12  10   113467898 79999999988765

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.3e-10  Score=97.55  Aligned_cols=108  Identities=12%  Similarity=0.111  Sum_probs=75.0

Q ss_pred             CeEEEEeccchHHHHHHHhc-----CC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-----cC
Q 025141          104 KTIFIMGGGEGSTAREILRH-----KT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-----SR  172 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~-----~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-----~~  172 (257)
                      .+||+||||+|.++..+++.     ++ ..++++||+++.+++.+++.+.... ....-++.++..++.++..     ..
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-NLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-SCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-ccccccccchhhhhhhhcchhcccCC
Confidence            37999999999987776552     22 2368999999999999999875321 1122244566777666532     23


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      .++||+|++-..-.+...      -..+++. +++.|+|||++++..
T Consensus       121 ~~~fD~I~~~~~l~~~~d------~~~~l~~-l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKD------IPATLKF-FHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCCEEEEEEESCGGGCSC------HHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             CCceeEEEEccceecCCC------HHHHHHH-HHhhCCCCCEEEEEE
Confidence            578999998654222111      2478898 799999999887754

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=4.8e-11  Score=97.28  Aligned_cols=92  Identities=13%  Similarity=0.082  Sum_probs=70.7

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      ..+|||||||+|.++..+.      ++++||+++.+++.|++.           +++++.+|+.+. ...+++||+|++.
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-----------~~~~~~~d~~~l-~~~~~~fD~I~~~   98 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-----------GVFVLKGTAENL-PLKDESFDFALMV   98 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-----------TCEEEECBTTBC-CSCTTCEEEEEEE
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-----------cccccccccccc-ccccccccccccc
Confidence            4589999999999887763      468999999999999863           578899998664 3345789999987


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ..-.....      -..++++ ++++|+|||.+++..
T Consensus        99 ~~l~h~~d------~~~~l~~-~~~~L~pgG~l~i~~  128 (208)
T d1vlma_          99 TTICFVDD------PERALKE-AYRILKKGGYLIVGI  128 (208)
T ss_dssp             SCGGGSSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cccccccc------cccchhh-hhhcCCCCceEEEEe
Confidence            54222111      2468898 799999999888764

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=7.1e-11  Score=98.48  Aligned_cols=106  Identities=21%  Similarity=0.270  Sum_probs=77.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC------CCcEEEEEECCHHHHHHHHhhhhhcc-CCCCCCCeEEEEcchHHHHhcCC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK------TVEKVVMCDIDEEVVEFCKSYLVVNK-EAFSDPRLELVINDARAELESRK  173 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~------~~~~v~~VEid~~vi~~a~~~~~~~~-~~~~~~rv~i~~~Da~~~l~~~~  173 (257)
                      .+..+||+||||+|..+..+++..      ...+|++||+++++++.|++++.... ....-.++.++.+|+.+.... .
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~-~  157 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-N  157 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-G
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc-c
Confidence            356899999999999887776641      23489999999999999998864210 001235899999999775433 4


Q ss_pred             CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      .+||+|+++..-+.  .|          .. +.+.|+|||++++-.+
T Consensus       158 ~~fD~Iiv~~a~~~--~p----------~~-l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         158 APYNAIHVGAAAPD--TP----------TE-LINQLASGGRLIVPVG  191 (223)
T ss_dssp             CSEEEEEECSCBSS--CC----------HH-HHHTEEEEEEEEEEES
T ss_pred             cceeeEEEEeechh--ch----------HH-HHHhcCCCcEEEEEEe
Confidence            68999999876432  23          23 4568999999988654

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.4e-10  Score=93.67  Aligned_cols=140  Identities=11%  Similarity=0.054  Sum_probs=93.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----CCCce
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKESY  176 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-----~~~~f  176 (257)
                      +..++||||||+|.++..+++..+..+++++|++++.++.|+++...++   ...|+.++..+....+..     ..++|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~---l~~~~~~~~~~~~~~~~~~~~~~~~~~f  137 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN---LSDLIKVVKVPQKTLLMDALKEESEIIY  137 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhC---CCcceeeeeeccHHhhhhhhhhcccCce
Confidence            3468999999999999888876445799999999999999999998664   456899988765544322     24689


Q ss_pred             eEEEEcCCCC-CC--C-----------Ccc-------cCCch----HHHHHHH---HcCcCCCCcEEEEecCCCCCCCCh
Q 025141          177 DVIIGDLADP-IE--G-----------GPC-------YKLYT----KSFYEFV---VKPRLNPEGIFVTQAGPAGIFSHT  228 (257)
Q Consensus       177 DvIi~D~~~~-~~--~-----------~p~-------~~L~t----~ef~~~~---~~~~L~pgGil~~~~~~~~~~~~~  228 (257)
                      |+|+++||-- ..  .           .|.       ..+++    ..|++.+   ..+.+++.|.+....+.      .
T Consensus       138 D~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~------~  211 (250)
T d2h00a1         138 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGK------K  211 (250)
T ss_dssp             SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESS------T
T ss_pred             eEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecc------h
Confidence            9999999721 10  0           011       11111    1244442   35678899988766542      2


Q ss_pred             HHHHHHHHHHhhh-CCceEEEee
Q 025141          229 EVFSCIYNTLRQV-FKCGCCALF  250 (257)
Q Consensus       229 ~~~~~~~~~l~~~-F~~v~~~~~  250 (257)
                      ..+..+.+.|++. |.++....+
T Consensus       212 ~~l~~i~~~L~~~g~~~i~~ie~  234 (250)
T d2h00a1         212 CSLAPLKEELRIQGVPKVTYTEF  234 (250)
T ss_dssp             TSHHHHHHHHHHTTCSEEEEEEE
T ss_pred             hhHHHHHHHHHHcCCCeEEEEEe
Confidence            2345566666654 667666555

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4e-09  Score=92.40  Aligned_cols=110  Identities=12%  Similarity=0.079  Sum_probs=79.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-----cCCCCCCCeEEEEcchHHHH-hcCCC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAFSDPRLELVINDARAEL-ESRKE  174 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~~~~~~~rv~i~~~Da~~~l-~~~~~  174 (257)
                      .+...|||||||+|.++..+++..+..++++||+++.+++.|++.....     ..+....+++++++|+.+.- ...-.
T Consensus       150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~  229 (328)
T d1nw3a_         150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA  229 (328)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccC
Confidence            4567899999999999999988766779999999999999998764311     01124578999999986532 11112


Q ss_pred             ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      ..|+|++..+..   .+  .  -...+.+ +.+.|||||.++..
T Consensus       230 ~advi~~~~~~f---~~--~--~~~~l~e-~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         230 NTSVIFVNNFAF---GP--E--VDHQLKE-RFANMKEGGRIVSS  265 (328)
T ss_dssp             HCSEEEECCTTT---CH--H--HHHHHHH-HHTTCCTTCEEEES
T ss_pred             cceEEEEcceec---ch--H--HHHHHHH-HHHhCCCCcEEEEe
Confidence            368999875432   12  1  1356677 68999999999874

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.86  E-value=4.5e-09  Score=93.72  Aligned_cols=107  Identities=21%  Similarity=0.262  Sum_probs=87.4

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-----------CCCCCeEEEEcchHHHHh
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-----------FSDPRLELVINDARAELE  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-----------~~~~rv~i~~~Da~~~l~  170 (257)
                      ++++|||..+|+|..+...++..+..+|+++|+|+..++.+++++.+++..           .....+.+.+.|+..++.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            678999999999999886665445679999999999999999999876421           122457889999999998


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       171 ~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      ..+++||+|.+|+|.    .|      ..|+.. +.+.++.||++.+-+
T Consensus       125 ~~~~~fDvIDiDPfG----s~------~pflds-Ai~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDPFG----SP------MEFLDT-ALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECCSS----CC------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCCCCC----Cc------HHHHHH-HHHHhccCCEEEEEe
Confidence            888899999999974    23      367887 788899999998754

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.2e-10  Score=94.95  Aligned_cols=115  Identities=16%  Similarity=0.135  Sum_probs=68.5

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCC------------------------
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP------------------------  156 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~------------------------  156 (257)
                      .++++|||||||+|..+..+++. +..+|+++|+++.+++.|+++...........                        
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            34678999999999887666653 34689999999999999999875331100000                        


Q ss_pred             -Ce-EEEEcch--HHHH-hcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          157 -RL-ELVINDA--RAEL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       157 -rv-~i~~~Da--~~~l-~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                       ++ .....+.  .... ....++||+|++...-..  .+...-.-..+++. +.+.|||||.+++..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~--~~~~~~~~~~~l~~-i~~~LkpGG~li~~~  193 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMEC--ACCSLDAYRAALCN-LASLLKPGGHLVTTV  193 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH--HCSSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHH--hcccHHHHHHHHHH-HHhccCCCcEEEEEE
Confidence             00 0000000  0000 112468999997543111  00000012357788 799999999988753

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.77  E-value=1.8e-08  Score=81.66  Aligned_cols=113  Identities=27%  Similarity=0.289  Sum_probs=84.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---HhcC-CCce
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESR-KESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---l~~~-~~~f  176 (257)
                      .+...+||++||+|+.+..+++..+..+|+++|.|+++++.|++.+...     ..|+++++++..+.   +... .+++
T Consensus        22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-----~~r~~~~~~~f~~~~~~~~~~~~~~v   96 (192)
T d1m6ya2          22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-----SDRVSLFKVSYREADFLLKTLGIEKV   96 (192)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-----TTTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred             CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-----cccccchhHHHhhHHHHHHHcCCCCc
Confidence            4557999999999999999998655689999999999999999987643     36899999876553   3333 4789


Q ss_pred             eEEEEcCCCCCC--CCcc-cCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIE--GGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~--~~p~-~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |.|+.|+.-...  ..+. ..-+..+.+.. +.+.|+|||.+++-.
T Consensus        97 dgIl~DlGvSs~Qld~~~r~~~~~~~~L~~-a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          97 DGILMDLGVSTYQLKGENRELENLKEFLKK-AEDLLNPGGRIVVIS  141 (192)
T ss_dssp             EEEEEECSCCHHHHHTSHTHHHHHHHHHHH-GGGGEEEEEEEEEEE
T ss_pred             ceeeeccchhHhhhhhhhccchhHHHHHHH-HHHhcCCCCeeeeec
Confidence            999999742100  0110 11224577888 789999999988753

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=5.8e-08  Score=87.09  Aligned_cols=109  Identities=11%  Similarity=0.042  Sum_probs=72.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc-----CCCCCCCeEE-EEcchH--HHHhcC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-----EAFSDPRLEL-VINDAR--AELESR  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-----~~~~~~rv~i-~~~Da~--~~l~~~  172 (257)
                      .+..+|||||||.|.++..+++..+.+++++||+++.+++.|++......     -+.......+ ..+|..  .+....
T Consensus       215 kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         215 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence            44578999999999999999887666799999999999999998653210     0011223333 233322  122222


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      -...|+|+++....   .+  .  -...+.+ +.+.|||||.+++
T Consensus       295 ~~~adVV~inn~~f---~~--~--l~~~L~e-i~r~LKPGGrIVs  331 (406)
T d1u2za_         295 IPQCDVILVNNFLF---DE--D--LNKKVEK-ILQTAKVGCKIIS  331 (406)
T ss_dssp             GGGCSEEEECCTTC---CH--H--HHHHHHH-HHTTCCTTCEEEE
T ss_pred             cccceEEEEecccC---ch--H--HHHHHHH-HHHhcCCCcEEEE
Confidence            35689999875421   12  1  2356777 6899999998886

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.63  E-value=1e-07  Score=79.49  Aligned_cols=75  Identities=20%  Similarity=0.304  Sum_probs=59.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+.++||+||+|.|.++..+++..  .+|++||+|+..++..++.+.      ..++++++++|+.++--. ......|+
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~------~~~n~~i~~~D~l~~~~~-~~~~~~vv   90 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV------DHDNFQVLNKDILQFKFP-KNQSYKIF   90 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT------TCCSEEEECCCGGGCCCC-SSCCCEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhh------cccchhhhhhhhhhcccc-ccccceee
Confidence            457899999999999999999863  689999999999999998764      347999999999886222 23334567


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      .+.|
T Consensus        91 ~NLP   94 (235)
T d1qama_          91 GNIP   94 (235)
T ss_dssp             EECC
T ss_pred             eeeh
Confidence            7764

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.5e-09  Score=90.64  Aligned_cols=114  Identities=14%  Similarity=0.077  Sum_probs=67.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCC-------------------------
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD-------------------------  155 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~-------------------------  155 (257)
                      .+++++|+||||+|..+...+.. ...+|+++|+++.+++.+++++......++-                         
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~-~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcc-cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            45789999999999776443332 2468999999999999999986532211110                         


Q ss_pred             CC-eEEEEcchHH-----HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          156 PR-LELVINDARA-----ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       156 ~r-v~i~~~Da~~-----~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .. ..+...|..+     -.....+.||+|++-..-..  .+...---..+++. +.++|||||++++.
T Consensus       132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~--i~~~~~~~~~~l~~-~~~~LkPGG~li~~  197 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA--VSPDLASFQRALDH-ITTLLRPGGHLLLI  197 (263)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH--HCSSHHHHHHHHHH-HHTTEEEEEEEEEE
T ss_pred             hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHH--HccCHHHHHHHHHH-HHHHcCCCCEEEEe
Confidence            00 0112222211     00112357999998654211  01000001456788 79999999999874

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.52  E-value=1.2e-07  Score=82.24  Aligned_cols=141  Identities=13%  Similarity=0.084  Sum_probs=90.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES  175 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~  175 (257)
                      .++.+|||.|||+|+++.++..+     ....+++++|+|+.++++|+.+.....     ....+.++|....  ....+
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~--~~~~~  188 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-----QKMTLLHQDGLAN--LLVDP  188 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEESCTTSC--CCCCC
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-----hhhhhhccccccc--ccccc
Confidence            34578999999999998887642     223479999999999999998877652     4567777875432  34578


Q ss_pred             eeEEEEcCCCCCCC-----------Cc-ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q 025141          176 YDVIIGDLADPIEG-----------GP-CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (257)
Q Consensus       176 fDvIi~D~~~~~~~-----------~p-~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~  243 (257)
                      ||+|+.+||-....           .. .......-|++. +.+.|+|||.+++-...  .+........+.+.|.+.+.
T Consensus       189 fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~~~~Lk~~G~~~~I~p~--~~l~~~~~~~lR~~L~~~~~  265 (328)
T d2f8la1         189 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQ-GMRYTKPGGYLFFLVPD--AMFGTSDFAKVDKFIKKNGH  265 (328)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHH-HHHTEEEEEEEEEEEEG--GGGGSTTHHHHHHHHHHHEE
T ss_pred             ccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHH-HHHhcCCCCceEEEecC--ccccCchhHHHHHHHHhCCc
Confidence            99999999732100           00 001112347888 68999999977654321  13333334455666666664


Q ss_pred             ceEEEeec
Q 025141          244 CGCCALFS  251 (257)
Q Consensus       244 ~v~~~~~~  251 (257)
                      -..++..+
T Consensus       266 i~~ii~lp  273 (328)
T d2f8la1         266 IEGIIKLP  273 (328)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEECC
Confidence            44444443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=3.1e-07  Score=80.53  Aligned_cols=103  Identities=15%  Similarity=0.182  Sum_probs=79.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~fD  177 (257)
                      .+.++|||+-||.|.++..+++.  ..+|++||+++..++.|+++...++    -.+++++.+|..+.+...   ..+||
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~----i~n~~~~~~~~~~~~~~~~~~~~~~d  284 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNG----LQNVTFYHENLEEDVTKQPWAKNGFD  284 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCTTSCCSSSGGGTTCCS
T ss_pred             CCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcc----cccceeeecchhhhhhhhhhhhccCc
Confidence            34678999999999999999885  4699999999999999999988773    468999999998877543   46799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +|++|||..   +.      .+..+. +. .++|.=++.+-++
T Consensus       285 ~vilDPPR~---G~------~~~~~~-l~-~~~~~~ivYVSCn  316 (358)
T d1uwva2         285 KVLLDPARA---GA------AGVMQQ-II-KLEPIRIVYVSCN  316 (358)
T ss_dssp             EEEECCCTT---CC------HHHHHH-HH-HHCCSEEEEEESC
T ss_pred             eEEeCCCCc---cH------HHHHHH-HH-HcCCCEEEEEeCC
Confidence            999999853   21      235555 33 3467767766553

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.34  E-value=2.6e-07  Score=77.35  Aligned_cols=97  Identities=21%  Similarity=0.195  Sum_probs=70.7

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      ...++|||||||+|..+..+++..|..++++.|+ |.+++.+.          ..+|++++.+|.++-    ....|+|+
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~----------~~~ri~~~~gd~~~~----~p~~D~~~  144 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP----------PLSGIEHVGGDMFAS----VPQGDAMI  144 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC----------CCTTEEEEECCTTTC----CCCEEEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC----------CCCCeEEecCCcccc----cccceEEE
Confidence            3458999999999999999998766689999999 66653211          357999999997542    24569988


Q ss_pred             EcCCC-CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +-..- .+  ..   -.....++. +++.|+|||.+++.
T Consensus       145 l~~vLh~~--~d---e~~~~iL~~-~~~aL~pgg~llI~  177 (244)
T d1fp1d2         145 LKAVCHNW--SD---EKCIEFLSN-CHKALSPNGKVIIV  177 (244)
T ss_dssp             EESSGGGS--CH---HHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EehhhhhC--CH---HHHHHHHHH-HHHHcCCCcEEEEE
Confidence            76432 22  11   114567888 79999999987764

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=2.6e-06  Score=72.56  Aligned_cols=139  Identities=17%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ..+..+|||+++|.|+=+..++......+|+++|+++.=++..++++...+    -..+.+...|....-......||.|
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g----~~~~~~~~~~~~~~~~~~~~~fd~I  175 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG----MKATVKQGDGRYPSQWCGEQQFDRI  175 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc----ccceeeeccccccchhcccccccEE
Confidence            345689999999999988777765445789999999999999998876542    2345555555433222345789999


Q ss_pred             EEcCCCCCC----CCcc-------c---C--CchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q 025141          180 IGDLADPIE----GGPC-------Y---K--LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (257)
Q Consensus       180 i~D~~~~~~----~~p~-------~---~--L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~  243 (257)
                      ++|++-...    ..|.       .   .  -...+.+.. +.+.|+|||.++--+.+.    .++..+.+++.+-+.++
T Consensus       176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~-a~~~lk~gG~lvYsTCS~----~~~ENE~vv~~~l~~~~  250 (284)
T d1sqga2         176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA-IWPHLKTGGTLVYATCSV----LPEENSLQIKAFLQRTA  250 (284)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHH-HGGGEEEEEEEEEEESCC----CGGGTHHHHHHHHHHCT
T ss_pred             EEeccccccCccccccchhhccccchhhHHHHHHHHHHHH-HHHhcCCCceEEEeeecC----chhhCHHHHHHHHHhCC
Confidence            999983211    1120       0   0  113467777 688999999998665443    23444555555555555


Q ss_pred             ceEE
Q 025141          244 CGCC  247 (257)
Q Consensus       244 ~v~~  247 (257)
                      ....
T Consensus       251 ~~~~  254 (284)
T d1sqga2         251 DAEL  254 (284)
T ss_dssp             TCEE
T ss_pred             CcEE
Confidence            5544

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=8.4e-07  Score=70.82  Aligned_cols=127  Identities=20%  Similarity=0.308  Sum_probs=86.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-------cC
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-------SR  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-------~~  172 (257)
                      .+..+||+|||+.|+.+..+++. .....|.++|+.|.-               .-+.+.++.+|..+.-.       ..
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~---------------~i~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD---------------PIVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC---------------CCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc---------------ccCCceEeecccccchhhhhhhhhcc
Confidence            45679999999999999988874 444689999986621               23577888888743211       13


Q ss_pred             CCceeEEEEcCCCCCCCCc------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceE
Q 025141          173 KESYDVIIGDLADPIEGGP------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGC  246 (257)
Q Consensus       173 ~~~fDvIi~D~~~~~~~~p------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~  246 (257)
                      ..++|+|++|.........      ...|. ...+.. +.+.|++||.+++..     +. ......+...|+..|..|.
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~-~~~l~~-a~~~Lk~gG~fV~K~-----F~-g~~~~~l~~~l~~~F~~V~  157 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLV-ELALEM-CRDVLAPGGSFVVKV-----FQ-GEGFDEYLREIRSLFTKVK  157 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHH-HHHHHH-HHHHEEEEEEEEEEE-----ES-STTHHHHHHHHHHHEEEEE
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHH-HHHHHh-hhhccCCCCcEEEEE-----ec-CccHHHHHHHHHhhcCEEE
Confidence            5789999999863322111      01111 223333 468999999999875     22 2335678889999999998


Q ss_pred             EEee
Q 025141          247 CALF  250 (257)
Q Consensus       247 ~~~~  250 (257)
                      .+.-
T Consensus       158 ~~KP  161 (180)
T d1ej0a_         158 VRKP  161 (180)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            8764

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.28  E-value=4.9e-08  Score=81.98  Aligned_cols=75  Identities=16%  Similarity=0.340  Sum_probs=60.8

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+||+||+|+|.++..+++..  .+|++||+|+.+++.+++.++      ..++++++++|+.++ .-....++.|+
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~------~~~n~~ii~~D~l~~-~~~~~~~~~vv   98 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK------LNTRVTLIHQDILQF-QFPNKQRYKIV   98 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT------TCSEEEECCSCCTTT-TCCCSSEEEEE
T ss_pred             CCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhh------hccchhhhhhhhhcc-ccccceeeeEe
Confidence            355789999999999999999963  699999999999888877664      246999999999875 33346677788


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      .+.|
T Consensus        99 ~NLP  102 (245)
T d1yuba_          99 GNIP  102 (245)
T ss_dssp             EECC
T ss_pred             eeee
Confidence            8875

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.27  E-value=3.7e-07  Score=76.39  Aligned_cols=96  Identities=21%  Similarity=0.173  Sum_probs=70.0

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ..++|||||||+|..+..+++..+..++++.|+ |++++.+.          ..+|++++.+|.++   . ...+|++++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~----------~~~rv~~~~gD~f~---~-~p~aD~~~l  144 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS----------GSNNLTYVGGDMFT---S-IPNADAVLL  144 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC----------CBTTEEEEECCTTT---C-CCCCSEEEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc----------ccCceEEEecCccc---C-CCCCcEEEE
Confidence            457899999999999999998766689999999 66654321          35799999999754   2 346899887


Q ss_pred             cCCC-CCCCCcccCCchHHHHHHHHcCcCCCC---cEEEEe
Q 025141          182 DLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPE---GIFVTQ  218 (257)
Q Consensus       182 D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pg---Gil~~~  218 (257)
                      -..- .+.     .-.....++. +++.|+||   |.+++.
T Consensus       145 ~~vLHdw~-----d~~~~~iL~~-~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         145 KYILHNWT-----DKDCLRILKK-CKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             ESCGGGSC-----HHHHHHHHHH-HHHHHSGGGCCCEEEEE
T ss_pred             EeecccCC-----hHHHHHHHHH-HHHHcCcccCCcEEEEE
Confidence            6432 221     1124578898 69999998   555543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.22  E-value=8.6e-07  Score=71.76  Aligned_cols=125  Identities=21%  Similarity=0.238  Sum_probs=78.9

Q ss_pred             cCCCCCeEEEEeccchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025141           99 HHPNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      ..+++.+|||.|||+|.++..+.+ +.....+.++|+|+..+++             ..+..++.+|.....  ...+||
T Consensus        16 ~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~-------------~~~~~~~~~~~~~~~--~~~~fd   80 (223)
T d2ih2a1          16 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL-------------PPWAEGILADFLLWE--PGEAFD   80 (223)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC-------------CTTEEEEESCGGGCC--CSSCEE
T ss_pred             CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh-------------cccceeeeeehhccc--cccccc
Confidence            345678999999999999887765 3555689999999865322             245678888865542  347899


Q ss_pred             EEEEcCCCCCC----CCcc-------------------cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHH
Q 025141          178 VIIGDLADPIE----GGPC-------------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI  234 (257)
Q Consensus       178 vIi~D~~~~~~----~~p~-------------------~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~  234 (257)
                      +|+.+++-...    ..+.                   ..-....|++. +.+.|+|||.+++-..  +.+........+
T Consensus        81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-al~~lk~~G~~~~I~p--~~~l~~~~~~~l  157 (223)
T d2ih2a1          81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEK-AVRLLKPGGVLVFVVP--ATWLVLEDFALL  157 (223)
T ss_dssp             EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHH-HHHHEEEEEEEEEEEE--GGGGTCGGGHHH
T ss_pred             eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHH-HHHhcccCCceEEEEe--eeeccCcchHHH
Confidence            99999873110    0000                   00012467777 6889999998776542  123333333344


Q ss_pred             HHHHhhh
Q 025141          235 YNTLRQV  241 (257)
Q Consensus       235 ~~~l~~~  241 (257)
                      .+.|.+.
T Consensus       158 R~~l~~~  164 (223)
T d2ih2a1         158 REFLARE  164 (223)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            4444444

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=8.9e-07  Score=74.37  Aligned_cols=75  Identities=13%  Similarity=0.252  Sum_probs=58.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-----hcCCCc
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-----ESRKES  175 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-----~~~~~~  175 (257)
                      .+.+.||+||+|.|.++..+++..  .+|++||+|+..++..++.+.      ..++++++++|+.++-     ....++
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~------~~~~~~ii~~D~l~~~~~~~~~~~~~~   91 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPF------LGPKLTIYQQDAMTFNFGELAEKMGQP   91 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTT------TGGGEEEECSCGGGCCHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhh------hccchhHHhhhhhhhcccccccccCCC
Confidence            356889999999999999999863  689999999999999988653      2369999999998641     112334


Q ss_pred             eeEEEEcCC
Q 025141          176 YDVIIGDLA  184 (257)
Q Consensus       176 fDvIi~D~~  184 (257)
                      | .|+.+.|
T Consensus        92 ~-~vvgNlP   99 (252)
T d1qyra_          92 L-RVFGNLP   99 (252)
T ss_dssp             E-EEEEECC
T ss_pred             e-EEEecch
Confidence            4 5666654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.13  E-value=1.9e-06  Score=71.45  Aligned_cols=102  Identities=18%  Similarity=0.156  Sum_probs=66.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHh----cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhc-CC
Q 025141          101 PNPKTIFIMGGGEGSTAREILR----HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELES-RK  173 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~----~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~-~~  173 (257)
                      .+|++||+||.+.|+.+..++.    .....+|+++|+++.......         ...+|++++.+|..+  .+.. ..
T Consensus        79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~---------~~~~~I~~i~gDs~~~~~~~~l~~  149 (232)
T d2bm8a1          79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---------SDMENITLHQGDCSDLTTFEHLRE  149 (232)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---------GGCTTEEEEECCSSCSGGGGGGSS
T ss_pred             hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh---------ccccceeeeecccccHHHHHHHHh
Confidence            3789999999999987765543    234579999999985422211         135799999999743  3333 23


Q ss_pred             CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      ..+|+|++|.....  .  ..+  .++ .  +...|++||++++...
T Consensus       150 ~~~dlIfID~~H~~--~--~v~--~~~-~--~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         150 MAHPLIFIDNAHAN--T--FNI--MKW-A--VDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             SCSSEEEEESSCSS--H--HHH--HHH-H--HHHTCCTTCEEEECSC
T ss_pred             cCCCEEEEcCCcch--H--HHH--HHH-H--HhcccCcCCEEEEEcC
Confidence            46899999975321  0  111  222 2  2458999999998653

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.12  E-value=2.4e-06  Score=71.45  Aligned_cols=83  Identities=18%  Similarity=0.119  Sum_probs=66.7

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc-CC-C---CCCCeEEEEcchHHHHhcCCCcee
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-EA-F---SDPRLELVINDARAELESRKESYD  177 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~~-~---~~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      +.+|||+-+|.|.-+..++...  .+|+++|-+|.+..+.++.+.... .. .   ...|++++++|+.+|++...++||
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D  166 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence            4589999999999999999863  689999999999998887664221 00 0   023899999999999998778899


Q ss_pred             EEEEcCCCCC
Q 025141          178 VIIGDLADPI  187 (257)
Q Consensus       178 vIi~D~~~~~  187 (257)
                      +|++||.-|.
T Consensus       167 vIYlDPMFp~  176 (250)
T d2oyra1         167 VVYLDPMFPH  176 (250)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCcc
Confidence            9999996543

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.1e-06  Score=71.16  Aligned_cols=76  Identities=18%  Similarity=0.378  Sum_probs=61.1

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+...||+||.|.|+++..+++..  .+|++||+|+..++..++.+....   ...+++++.+|+.++   ....++.|+
T Consensus        20 ~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~---~~~~~~~i~~D~l~~---~~~~~~~vV   91 (278)
T d1zq9a1          20 RPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTP---VASKLQVLVGDVLKT---DLPFFDTCV   91 (278)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEESCTTTS---CCCCCSEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhc---cccchhhhHHHHhhh---hhhhhhhhh
Confidence            346789999999999999999973  599999999999999998875321   346899999998765   224567888


Q ss_pred             EcCC
Q 025141          181 GDLA  184 (257)
Q Consensus       181 ~D~~  184 (257)
                      .++|
T Consensus        92 ~NLP   95 (278)
T d1zq9a1          92 ANLP   95 (278)
T ss_dssp             EECC
T ss_pred             cchH
Confidence            8765

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.05  E-value=1.7e-06  Score=72.08  Aligned_cols=95  Identities=20%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      .++|||||||.|..+.++++..+..+++++|+- .+++.+          ...+|++++.+|.++-+    ...|++++-
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~----------~~~~r~~~~~~d~~~~~----P~ad~~~l~  146 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLP-HVIEDA----------PSYPGVEHVGGDMFVSI----PKADAVFMK  146 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECT-TTTTTC----------CCCTTEEEEECCTTTCC----CCCSCEECS
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccH-Hhhhhc----------ccCCceEEecccccccC----CCcceEEEE
Confidence            578999999999999999997667899999994 443322          13579999999975422    234555543


Q ss_pred             CC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          183 LA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       183 ~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .. ..+   +  .-.....++. +++.|+|||.+++.
T Consensus       147 ~vlh~~---~--d~~~~~iL~~-~~~al~pgg~~li~  177 (243)
T d1kyza2         147 WICHDW---S--DEHCLKFLKN-CYEALPDNGKVIVA  177 (243)
T ss_dssp             SSSTTS---C--HHHHHHHHHH-HHHHCCSSSCEEEE
T ss_pred             EEeecC---C--HHHHHHHHHH-HHHhcCCCceEEEE
Confidence            22 222   1  1124578898 79999999977664

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=9.1e-05  Score=62.97  Aligned_cols=134  Identities=13%  Similarity=-0.003  Sum_probs=86.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CCcee
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~~fD  177 (257)
                      ....+|||+++|.|+=+..++.. .+..+|+++|+++.=++..++++...+    -.++.+...|+..+-...  .++||
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g----~~~~~~~~~d~~~~~~~~~~~~~fD  168 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG----VSCCELAEEDFLAVSPSDPRYHEVH  168 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC----ccceeeeehhhhhhcccccccceee
Confidence            34578999999999977766653 344689999999999999999887542    367999999987764332  26799


Q ss_pred             EEEEcCCCCCC----CCcc-------c-----CCc--hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025141          178 VIIGDLADPIE----GGPC-------Y-----KLY--TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (257)
Q Consensus       178 vIi~D~~~~~~----~~p~-------~-----~L~--t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~  239 (257)
                      .|++|++-...    ..|.       .     .|.  ....+.. +. .|+|||.++--+.+   + .++..+.+++.+-
T Consensus       169 ~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~-a~-~l~~gG~lvYsTCS---l-~~~ENe~vV~~~L  242 (293)
T d2b9ea1         169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCH-AL-TFPSLQRLVYSTCS---L-CQEENEDVVRDAL  242 (293)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHH-HT-TCTTCCEEEEEESC---C-CGGGTHHHHHHHH
T ss_pred             EEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHH-hh-hcccccEEEEeecc---C-ChhHhHHHHHHHH
Confidence            99999983211    0110       0     011  1234444 34 58999988755443   2 2344455555555


Q ss_pred             hhCCc
Q 025141          240 QVFKC  244 (257)
Q Consensus       240 ~~F~~  244 (257)
                      +.+|.
T Consensus       243 ~~~~~  247 (293)
T d2b9ea1         243 QQNPG  247 (293)
T ss_dssp             TTSTT
T ss_pred             HhCCC
Confidence            55553

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=2.7e-05  Score=63.12  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=77.8

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++++++|||+|+|.=+.-++-..+..+++.||.+..=++..++-....    .-.+++++++.+.++.  ...+||+|++
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~~~--~~~~fD~V~s  138 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL----KLENIEPVQSRVEEFP--SEPPFDGVIS  138 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT----TCSSEEEEECCTTTSC--CCSCEEEEEC
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc----CCcceeeeccchhhhc--cccccceehh
Confidence            567999999999986655554434579999999999888888765432    2468999999987653  3468999998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      -++.+          ...+++. +...++++|.++..-|.
T Consensus       139 RA~~~----------~~~ll~~-~~~~l~~~g~~~~~KG~  167 (207)
T d1jsxa_         139 RAFAS----------LNDMVSW-CHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             SCSSS----------HHHHHHH-HTTSEEEEEEEEEEESS
T ss_pred             hhhcC----------HHHHHHH-HHHhcCCCcEEEEECCC
Confidence            87742          2356676 68999999999987653

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.00  E-value=4.3e-06  Score=74.98  Aligned_cols=148  Identities=15%  Similarity=0.047  Sum_probs=93.3

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCC-------------CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKT-------------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~-------------~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~  168 (257)
                      ...+|||-.||+|+++.++.++-.             ...+.++|+++....+|+-++-+.+.  ..++..+..+|....
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~--~~~~~~i~~~d~l~~  239 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI--GTDRSPIVCEDSLEK  239 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC--CSSCCSEEECCTTTS
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC--ccccceeecCchhhh
Confidence            468999999999999887766310             12489999999999999988765532  334667888886532


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCc-----------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHH
Q 025141          169 LESRKESYDVIIGDLADPIEGGP-----------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT  237 (257)
Q Consensus       169 l~~~~~~fDvIi~D~~~~~~~~p-----------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~  237 (257)
                        ....+||+|+.+||-......           ...-...-|++. +.+.|+|||.+++-... +.+........+.+.
T Consensus       240 --~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~~~~Lk~~G~~~iI~p~-~~L~~~~~~~~iR~~  315 (425)
T d2okca1         240 --EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQH-MMLMLKTGGRAAVVLPD-NVLFEAGAGETIRKR  315 (425)
T ss_dssp             --CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHH-HHHHEEEEEEEEEEEEH-HHHHCSTHHHHHHHH
T ss_pred             --hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHH-HHHhcCCCCeEEEEech-HHhhhhhhHHHHHHH
Confidence              334789999999983211000           001112358888 68899999977654311 112222333456666


Q ss_pred             HhhhCCceEEEeecCccc
Q 025141          238 LRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       238 l~~~F~~v~~~~~~~~~~  255 (257)
                      |-+.+--..++..+.=-|
T Consensus       316 Ll~~~~i~aIi~LP~~~F  333 (425)
T d2okca1         316 LLQDFNLHTILRLPTGIF  333 (425)
T ss_dssp             HHHHEEEEEEEECCSSSS
T ss_pred             HHHhcchhHhhcCCcccc
Confidence            666655455555444333

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.98  E-value=3.1e-05  Score=66.66  Aligned_cols=115  Identities=15%  Similarity=0.076  Sum_probs=80.4

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+..+|||+++|.|+=+..++.. .....++++|+++.-++..++++...+    ..++.+...|++.+ .....+||.|
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~----~~~i~~~~~d~~~~-~~~~~~fD~I  189 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG----VLNVILFHSSSLHI-GELNVEFDKI  189 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT----CCSEEEESSCGGGG-GGGCCCEEEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH----hhcccccccccccc-ccccccccEE
Confidence            34579999999999977666653 234689999999999999988876442    36788888998765 3446789999


Q ss_pred             EEcCCCCCC----CCccc--C----------CchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          180 IGDLADPIE----GGPCY--K----------LYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       180 i~D~~~~~~----~~p~~--~----------L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      ++|++-...    ..|..  .          -...+.+.. +.+.|||||.++--+.+
T Consensus       190 LvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lk~gG~lVYsTCS  246 (313)
T d1ixka_         190 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEK-GLEVLKPGGILVYSTCS  246 (313)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEESC
T ss_pred             EEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHh-hhheeCCCcEEEEeecc
Confidence            999983211    11210  0          112356666 67899999988865543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.97  E-value=3.9e-05  Score=60.93  Aligned_cols=108  Identities=28%  Similarity=0.268  Sum_probs=76.9

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH---hc-CCCce
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l---~~-~~~~f  176 (257)
                      .+...++|..+|.|+-++++++..  .+|+++|.||++++.+++.        .++++.+++++..++-   .. ..+++
T Consensus        17 ~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~--------~~~~~~~~~~~f~~~~~~l~~~~~~~v   86 (182)
T d1wg8a2          17 RPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGL--------HLPGLTVVQGNFRHLKRHLAALGVERV   86 (182)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHT--------CCTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred             CCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhc--------cccceeEeehHHHHHHHHHHHcCCCcc
Confidence            456789999999999999999953  5999999999999999874        2468999988765543   22 23679


Q ss_pred             eEEEEcCCCC-CC-CCcccCC-chHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADP-IE-GGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~-~~-~~p~~~L-~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |.|+.|+--. .. ..|...+ +....+.. ..+.|+|||.+++..
T Consensus        87 dgIl~DLGvSs~qld~~~re~~~~~~~L~~-~~~~lk~gg~~~ii~  131 (182)
T d1wg8a2          87 DGILADLGVSSFHLDDPSDELNALKEFLEQ-AAEVLAPGGRLVVIA  131 (182)
T ss_dssp             EEEEEECSCCHHHHHCGGTHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CEEEEEccCCHHHhhcchHHHHHHHHHHHH-HHhhhCCCCeEEEEe
Confidence            9999998411 00 0111111 12345666 678999999998764

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.93  E-value=2.2e-05  Score=62.80  Aligned_cols=114  Identities=16%  Similarity=0.150  Sum_probs=63.8

Q ss_pred             CCCCCeEEEEeccchHHHHHH----Hhc----CCCcEEEEEECCHHHHHHHHhh------------------hhhccCCC
Q 025141          100 HPNPKTIFIMGGGEGSTAREI----LRH----KTVEKVVMCDIDEEVVEFCKSY------------------LVVNKEAF  153 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l----~~~----~~~~~v~~VEid~~vi~~a~~~------------------~~~~~~~~  153 (257)
                      ..++-+|+.+|||+|--+..+    ...    ...-+|++.|+|+.+++.|++.                  |.......
T Consensus        22 ~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~  101 (193)
T d1af7a2          22 RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH  101 (193)
T ss_dssp             SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred             cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCc
Confidence            355679999999999843332    221    1223799999999999999853                  21100000


Q ss_pred             C---------CCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          154 S---------DPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       154 ~---------~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .         ...+++...+.........++||+|++--.--. ..+   -...+.++. ++++|+|||+|++-
T Consensus       102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiY-f~~---~~~~~vl~~-l~~~L~pGG~L~lG  170 (193)
T d1af7a2         102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIY-FDK---TTQEDILRR-FVPLLKPDGLLFAG  170 (193)
T ss_dssp             CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGG-SCH---HHHHHHHHH-HGGGEEEEEEEEEC
T ss_pred             cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHh-cCH---HHHHHHHHH-HHHHhCCCcEEEEe
Confidence            0         001112222211110112367999998632100 011   112467888 79999999998874

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.85  E-value=0.00022  Score=58.82  Aligned_cols=120  Identities=17%  Similarity=0.182  Sum_probs=84.2

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDvI  179 (257)
                      ..++++|||+|+|.=+.-++=..+..+++.||-+..=++..+.-....    .-.+++++++.+.++-..  ..++||+|
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L----~L~n~~i~~~R~E~~~~~~~~~~~~D~v  145 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL----QLENTTFCHDRAETFGQRKDVRESYDIV  145 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH----TCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh----CCCCcEEEeehhhhccccccccccceEE
Confidence            467999999999985554443234579999999998887766654322    235889999998887543  24789999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~  240 (257)
                      ++-++.+          ...+++. +...++++|.+++.-|..    ..+.+.+..+.++.
T Consensus       146 ~sRAva~----------l~~ll~~-~~~~l~~~g~~i~~KG~~----~~~El~~a~~~~~~  191 (239)
T d1xdza_         146 TARAVAR----------LSVLSEL-CLPLVKKNGLFVALKAAS----AEEELNAGKKAITT  191 (239)
T ss_dssp             EEECCSC----------HHHHHHH-HGGGEEEEEEEEEEECC-----CHHHHHHHHHHHHH
T ss_pred             EEhhhhC----------HHHHHHH-HhhhcccCCEEEEECCCC----hHHHHHHHHHHHHH
Confidence            9987742          1355666 689999999998876543    23445555555554

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.79  E-value=2.6e-05  Score=64.76  Aligned_cols=134  Identities=12%  Similarity=0.014  Sum_probs=82.3

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      .+..+|+|||||.|+.+..++...++..|.++++--..     ...+.....+.-.-+++..++-..+  ..+.+.|+|+
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~-----~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vl  137 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG-----HEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLL  137 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT-----SCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEE
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc-----ccCCccccccccccccchhhhhHHh--cCCCcCCEEE
Confidence            34458999999999999999987666788888872111     0011111111112234444443222  2457899999


Q ss_pred             EcCCCCCCCCcc-cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025141          181 GDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC  247 (257)
Q Consensus       181 ~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~  247 (257)
                      +|.... ...+. .+.-+.+.++. +.+.|+|||-+++..-+|   ..+ ...+.+..|+..|....+
T Consensus       138 cDm~es-s~~~~vd~~Rtl~vLel-a~~wLk~gg~FvvKVl~p---y~~-~v~e~le~lq~~fgg~lV  199 (257)
T d2p41a1         138 CDIGES-SPNPTVEAGRTLRVLNL-VENWLSNNTQFCVKVLNP---YMS-SVIEKMEALQRKHGGALV  199 (257)
T ss_dssp             ECCCCC-CSSHHHHHHHHHHHHHH-HHHHCCTTCEEEEEESCC---CSH-HHHHHHHHHHHHHCCEEE
T ss_pred             eeCCCC-CCCchhhhhhHHHHHHH-HHHHcccCCEEEEEECCC---CCh-HHHHHHHHHHHHhCCeeE
Confidence            998632 11221 13335566776 688999999999987665   233 345667778888865443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=3.7e-05  Score=66.40  Aligned_cols=60  Identities=8%  Similarity=0.099  Sum_probs=51.1

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~  168 (257)
                      +...||+||.|.|.+++.++......+|+++|+|+...+..++.+.       +.+++++++|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~-------~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-------GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-------TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc-------CCCcEEEeCchhhc
Confidence            4678999999999999999986444699999999999998887653       46899999999865

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.60  E-value=0.00015  Score=56.58  Aligned_cols=98  Identities=24%  Similarity=0.394  Sum_probs=68.1

Q ss_pred             CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      +|.+|++||+|.-+. +...++.-+ .+|+++|.+++.++..+..+..        +++....+- +.+.+.-...|+||
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG-A~V~~~D~~~~~l~~l~~~~~~--------~~~~~~~~~-~~l~~~~~~aDivI  100 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDINVERLSYLETLFGS--------RVELLYSNS-AEIETAVAEADLLI  100 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHGG--------GSEEEECCH-HHHHHHHHTCSEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC-CEEEEEeCcHHHHHHHHHhhcc--------cceeehhhh-hhHHHhhccCcEEE
Confidence            588999999997654 444444344 6999999999999988876642        344444443 23333335689999


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      ....-|..  ++.+|.+++.+     +.+|||.+++
T Consensus       101 ~aalipG~--~aP~lIt~~mv-----~~Mk~GSVIV  129 (168)
T d1pjca1         101 GAVLVPGR--RAPILVPASLV-----EQMRTGSVIV  129 (168)
T ss_dssp             ECCCCTTS--SCCCCBCHHHH-----TTSCTTCEEE
T ss_pred             EeeecCCc--ccCeeecHHHH-----hhcCCCcEEE
Confidence            99876653  33478888754     4689999887

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=6.9e-05  Score=68.70  Aligned_cols=153  Identities=7%  Similarity=-0.055  Sum_probs=89.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhc----CC--------------CcEEEEEECCHHHHHHHHhhhhhccCCC-CCCCeEEE
Q 025141          101 PNPKTIFIMGGGEGSTAREILRH----KT--------------VEKVVMCDIDEEVVEFCKSYLVVNKEAF-SDPRLELV  161 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~----~~--------------~~~v~~VEid~~vi~~a~~~~~~~~~~~-~~~rv~i~  161 (257)
                      ....+|+|-.||+|+++..+.++    ..              ...+.++|+++...++|+-++-+.+... ....-.+.
T Consensus       163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~  242 (524)
T d2ar0a1         163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR  242 (524)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred             ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhh
Confidence            34569999999999998776553    10              1258999999999999998765442100 01122344


Q ss_pred             EcchHHHHhcCCCceeEEEEcCCCCCCC--------CcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHH
Q 025141          162 INDARAELESRKESYDVIIGDLADPIEG--------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC  233 (257)
Q Consensus       162 ~~Da~~~l~~~~~~fDvIi~D~~~~~~~--------~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~  233 (257)
                      .+|...--.....+||+|+.+||-....        .+...-...-|++. +.+.|+|||++++-... +..........
T Consensus       243 ~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~gGr~aiIlP~-~~Lf~~~~~~~  320 (524)
T d2ar0a1         243 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH-IIETLHPGGRAAVVVPD-NVLFEGGKGTD  320 (524)
T ss_dssp             ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH-HHHHEEEEEEEEEEEEH-HHHHCCTHHHH
T ss_pred             hhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHH-HHHhccccCcEEEEEeh-HHhhhhhhhHH
Confidence            5554332222347899999999732110        01011112348888 68899999987764311 11112222345


Q ss_pred             HHHHHhhhCCceEEEeecCccc
Q 025141          234 IYNTLRQVFKCGCCALFSSYSF  255 (257)
Q Consensus       234 ~~~~l~~~F~~v~~~~~~~~~~  255 (257)
                      +.+.|-+.+--..++..++=-|
T Consensus       321 iR~~Ll~~~~i~aII~LP~~~F  342 (524)
T d2ar0a1         321 IRRDLMDKCHLHTILRLPTGIF  342 (524)
T ss_dssp             HHHHHHHHEEEEEEEECCSSCS
T ss_pred             HHHHHHHcCCceEEEECCCCcC
Confidence            6666666665555555554444

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.27  E-value=0.00021  Score=55.79  Aligned_cols=98  Identities=13%  Similarity=0.123  Sum_probs=64.8

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CC-Ccee
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~-~~fD  177 (257)
                      .+..+||++|+|. |.++..+++..+..+|+++|.+++=.+.++++=. .      .-+.....|..+.+.+ ++ ..+|
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-~------~~i~~~~~~~~~~v~~~t~g~G~D   98 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-T------DILNYKNGHIEDQVMKLTNGKGVD   98 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-S------EEECGGGSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-c------ccccccchhHHHHHHHHhhccCcc
Confidence            4568999999987 7778888887776789999999999999987521 0      0111112233444433 33 4599


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +||-....+            +.++. ..+.|+|+|.+++-
T Consensus        99 ~vid~~g~~------------~~~~~-a~~~~~~~G~iv~~  126 (174)
T d1jqba2          99 RVIMAGGGS------------ETLSQ-AVKMVKPGGIISNI  126 (174)
T ss_dssp             EEEECSSCT------------THHHH-HHHHEEEEEEEEEC
T ss_pred             eEEEccCCH------------HHHHH-HHHHHhcCCEEEEE
Confidence            987654321            22344 45688999999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=0.00027  Score=54.59  Aligned_cols=97  Identities=14%  Similarity=0.086  Sum_probs=62.2

Q ss_pred             CCCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.++||++|+| .|.++..++++.+ .+|+++|.+++-++.++++-.       +  ..+...+-.++.+...+.+|+|
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~a~~lGa-------~--~~i~~~~~~~~~~~~~~~~d~v   95 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISRSSRKREDAMKMGA-------D--HYIATLEEGDWGEKYFDTFDLI   95 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHHTC-------S--EEEEGGGTSCHHHHSCSCEEEE
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhcc-ccccccccchhHHHHhhccCC-------c--EEeeccchHHHHHhhhcccceE
Confidence            456899999987 4556677777766 589999999999999987521       1  1111111123445556789998


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +.....+.  ..  .      +.. ..+.|+|+|.+++-
T Consensus        96 i~~~~~~~--~~--~------~~~-~~~~l~~~G~iv~~  123 (168)
T d1piwa2          96 VVCASSLT--DI--D------FNI-MPKAMKVGGRIVSI  123 (168)
T ss_dssp             EECCSCST--TC--C------TTT-GGGGEEEEEEEEEC
T ss_pred             EEEecCCc--cc--h------HHH-HHHHhhccceEEEe
Confidence            86443221  10  0      123 46789999998864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=0.0003  Score=54.95  Aligned_cols=97  Identities=18%  Similarity=0.168  Sum_probs=62.1

Q ss_pred             CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhc-C-CCc
Q 025141          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES-R-KES  175 (257)
Q Consensus       102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---l~~-~-~~~  175 (257)
                      +.++||++|+|. |.++..++++.+..+|+++|.+++-.+.+++.-.       +.-+.....|..+.   +.+ + ...
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~vi~~~~~~~~~~~~~i~~~~~~~g  100 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA-------DLTLNRRETSVEERRKAIMDITHGRG  100 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccc-------eEEEeccccchHHHHHHHHHhhCCCC
Confidence            468999999874 5667788887776689999999999999987521       00011111233332   222 2 346


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+||-....     +       ..++. ..+.|+++|.+++-
T Consensus       101 ~Dvvid~vG~-----~-------~~~~~-a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         101 ADFILEATGD-----S-------RALLE-GSELLRRGGFYSVA  130 (182)
T ss_dssp             EEEEEECSSC-----T-------THHHH-HHHHEEEEEEEEEC
T ss_pred             ceEEeecCCc-----h-------hHHHH-HHHHhcCCCEEEEE
Confidence            9998854322     1       12345 46789999998754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.20  E-value=0.00045  Score=54.94  Aligned_cols=112  Identities=11%  Similarity=0.078  Sum_probs=71.4

Q ss_pred             CCCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCce
Q 025141          100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY  176 (257)
Q Consensus       100 ~~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~f  176 (257)
                      ..+..+||++|+|. |.++..+++..+..+|+++|.++.-++.|+++-...-   .++    ...|..+.+.+  ....+
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~---~~~----~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA---DLS----LDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE---ETT----SSSCHHHHHHHHHSSSCE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEE---EeC----CCcCHHHHHHHHhCCCCc
Confidence            35678999999998 5566777776677899999999999999998721100   000    12344444433  34569


Q ss_pred             eEEEEcCCCCCCCCcc---cCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGPC---YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~---~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+++-..-.+....+.   ...-+.+.++. +.+.++|+|.+++-.
T Consensus        96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~-~~~~~r~gG~v~~~G  140 (195)
T d1kola2          96 DCAVDAVGFEARGHGHEGAKHEAPATVLNS-LMQVTRVAGKIGIPG  140 (195)
T ss_dssp             EEEEECCCTTCBCSSTTGGGSBCTTHHHHH-HHHHEEEEEEEEECS
T ss_pred             EEEEECccccccCCcccceeecCcHHHHHH-HHHHHhcCCEEEEee
Confidence            9988544321110111   11114577888 688999999998653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.01  E-value=0.0052  Score=46.81  Aligned_cols=104  Identities=12%  Similarity=0.018  Sum_probs=63.8

Q ss_pred             CCCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025141          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDv  178 (257)
                      .+..+||++|+| .|.++.++++..+ .+|+++|.+++-.+.|++.........+...  --..+..+.+.. ....+|+
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~--~~~~~~~~~~~~~~g~g~D~  101 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGADVTLVVDPAK--EEESSIIERIRSAIGDLPNV  101 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSEEEECCTTT--SCHHHHHHHHHHHSSSCCSE
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCcEEEeccccc--cccchhhhhhhcccccCCce
Confidence            456899999987 4556677777766 5999999999999999986321100000000  000112223332 3467998


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      |+-...     .       ...++. +.+.|+|+|.+++-..
T Consensus       102 vid~~g-----~-------~~~~~~-a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2         102 TIDCSG-----N-------EKCITI-GINITRTGGTLMLVGM  130 (170)
T ss_dssp             EEECSC-----C-------HHHHHH-HHHHSCTTCEEEECSC
T ss_pred             eeecCC-----C-------hHHHHH-HHHHHhcCCceEEEec
Confidence            875432     1       234555 5678999999987543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0022  Score=49.20  Aligned_cols=100  Identities=12%  Similarity=0.064  Sum_probs=63.6

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH---HHhc-CCCc
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---ELES-RKES  175 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~---~l~~-~~~~  175 (257)
                      .+..+||++|+|..+ ++..++++.+..+|+++|.++.-++.|+++-..       .-+..-..|..+   .+.. .+..
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~-------~~~~~~~~~~~~~~~~~~~~~g~g   97 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-------LVLQISKESPQEIARKVEGQLGCK   97 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-------EEEECSSCCHHHHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc-------ccccccccccccccccccccCCCC
Confidence            345799999997655 456666666767999999999999999986210       001111122222   2222 3467


Q ss_pred             eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      +|+|+-....            ...++. +.+.++++|.+++-..
T Consensus        98 ~Dvvid~~G~------------~~~~~~-a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          98 PEVTIECTGA------------EASIQA-GIYATRSGGTLVLVGL  129 (171)
T ss_dssp             CSEEEECSCC------------HHHHHH-HHHHSCTTCEEEECSC
T ss_pred             ceEEEeccCC------------chhHHH-HHHHhcCCCEEEEEec
Confidence            9998754321            234566 5778999999987543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.90  E-value=0.0068  Score=46.10  Aligned_cols=118  Identities=16%  Similarity=0.139  Sum_probs=72.7

Q ss_pred             CeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       104 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ++|++||+|.  +++++.+.+.....+|+++|.|++.++.+++.-.          +.....+...   ......|+|++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~----------~~~~~~~~~~---~~~~~~dlIil   68 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI----------IDEGTTSIAK---VEDFSPDFVML   68 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS----------CSEEESCGGG---GGGTCCSEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc----------chhhhhhhhh---hhccccccccc
Confidence            4799999985  3456666654334589999999999999987521          1111111111   11246899998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEe
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCAL  249 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~  249 (257)
                      ..+.         -...+.+.. ++..++++-+++ ..++.    .......+.+.+...|-..+|..
T Consensus        69 a~p~---------~~~~~vl~~-l~~~~~~~~ii~-d~~s~----k~~~~~~~~~~~~~~~i~~hPm~  121 (171)
T d2g5ca2          69 SSPV---------RTFREIAKK-LSYILSEDATVT-DQGSV----KGKLVYDLENILGKRFVGGHPIA  121 (171)
T ss_dssp             CSCH---------HHHHHHHHH-HHHHSCTTCEEE-ECCSC----CTHHHHHHHHHHGGGEECEEEEC
T ss_pred             cCCc---------hhhhhhhhh-hhcccccccccc-ccccc----cHHHHHHHHHhhccccccccccc
Confidence            7642         124567777 688899887665 43322    23445555566666665566654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.88  E-value=0.0012  Score=51.11  Aligned_cols=98  Identities=12%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDv  178 (257)
                      .+..+||++|+|.-+ ++..+++..+..+|.++|.++.-.+.++++- ..      .-+.....|..+.+++ +++.+|+
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G-a~------~~i~~~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG-AT------HVINSKTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT-CS------EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC-Ce------EEEeCCCcCHHHHHHHHcCCCCcE
Confidence            345789999987654 3455555555678999999999999999852 11      0111112456666654 4568999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+-...            +.+.++. +.+.++|+|.+++-
T Consensus       100 vid~~G------------~~~~~~~-~~~~~~~~G~i~~~  126 (174)
T d1f8fa2         100 ALESTG------------SPEILKQ-GVDALGILGKIAVV  126 (174)
T ss_dssp             EEECSC------------CHHHHHH-HHHTEEEEEEEEEC
T ss_pred             EEEcCC------------cHHHHHH-HHhcccCceEEEEE
Confidence            886532            1244566 57789999998864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.85  E-value=0.0015  Score=51.33  Aligned_cols=107  Identities=15%  Similarity=0.104  Sum_probs=64.2

Q ss_pred             CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-C-CCCCeEEEEcch-----------HH
Q 025141          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-F-SDPRLELVINDA-----------RA  167 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-~-~~~rv~i~~~Da-----------~~  167 (257)
                      +|.+||+||+|.-++ +...+..-+ ++|+++|+++...+..++.++..-.. . .....+-..+.+           .+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lG-A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLG-AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            578999999997664 344444344 69999999999999999875422100 0 000000000011           11


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025141          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (257)
Q Consensus       168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~  216 (257)
                      .+.+.-.+.|+||.-..-|....  ..|.+++..     +.+|||.+++
T Consensus       107 ~l~~~l~~aDlVI~talipG~~a--P~lit~~mv-----~~Mk~GSVIV  148 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPA--PVLITEEMV-----TKMKPGSVII  148 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCC--CCCSCHHHH-----TTSCTTCEEE
T ss_pred             HHHHHHHhhhhheeeeecCCccc--ceeehHHHH-----HhcCCCcEEE
Confidence            22222256899999987665333  478888744     4689999887

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.61  E-value=0.0018  Score=49.64  Aligned_cols=99  Identities=21%  Similarity=0.282  Sum_probs=62.5

Q ss_pred             CCCCeEEEEec-c-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025141          101 PNPKTIFIMGG-G-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~-G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~f  176 (257)
                      .++++||++|+ | .|.++..+++..+..+|++++.+++-.+.++++-...       .+.....|..+.+++ + ++.|
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~-------~i~~~~~~~~~~~~~~~~~~~~   98 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY-------VINASMQDPLAEIRRITESKGV   98 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE-------EEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce-------eeccCCcCHHHHHHHHhhcccc
Confidence            45678999996 3 4445566666556679999999999999998752100       011111344444433 2 3569


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+|+-....            .+.++. .-+.|+|+|.+++-.
T Consensus        99 d~vid~~g~------------~~~~~~-a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          99 DAVIDLNNS------------EKTLSV-YPKALAKQGKYVMVG  128 (170)
T ss_dssp             EEEEESCCC------------HHHHTT-GGGGEEEEEEEEECC
T ss_pred             hhhhccccc------------chHHHh-hhhhcccCCEEEEec
Confidence            988854321            233455 577999999988653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.01  Score=45.17  Aligned_cols=95  Identities=21%  Similarity=0.255  Sum_probs=60.9

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.++||++|+|+ |.++.++++..+ .++++++.+++-.+.+++.-.       +   .++...-........+.+|++
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~G-a~~i~~~~~~~~~~~a~~lGa-------d---~~i~~~~~~~~~~~~~~~D~v   97 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKALGA-------D---EVVNSRNADEMAAHLKSFDFI   97 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHTC-------S---EEEETTCHHHHHTTTTCEEEE
T ss_pred             CCCCEEEEeccchHHHHHHHHhhccc-ccchhhccchhHHHHHhccCC-------c---EEEECchhhHHHHhcCCCcee
Confidence            4568999999865 446677777766 477789999988888886421       1   122212122233344679998


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +-....+.            .+.. ..+.|+++|.+++-.
T Consensus        98 id~~g~~~------------~~~~-~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          98 LNTVAAPH------------NLDD-FTTLLKRDGTMTLVG  124 (168)
T ss_dssp             EECCSSCC------------CHHH-HHTTEEEEEEEEECC
T ss_pred             eeeeecch------------hHHH-HHHHHhcCCEEEEec
Confidence            87654221            1244 467999999998753

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.54  E-value=0.0035  Score=48.12  Aligned_cols=99  Identities=13%  Similarity=0.156  Sum_probs=63.9

Q ss_pred             CCCCeEEEEeccchHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeE
Q 025141          101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDv  178 (257)
                      .+.++||++|+|..+.. ..+++..+..+|+++|.+++-.+.+++.....       -+..-..+....++.+ ...+|+
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~-------~i~~~~~~~~~~~~~~~~~g~d~  103 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH-------VVDARRDPVKQVMELTRGRGVNV  103 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE-------EEETTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce-------eecCcccHHHHHHHhhCCCCceE
Confidence            34578999998766644 56666556678999999999999999863211       0000012233344433 356999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+-....            ...++. ..+.|+++|.+++-.
T Consensus       104 vid~~g~------------~~~~~~-a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         104 AMDFVGS------------QATVDY-TPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEESSCC------------HHHHHH-GGGGEEEEEEEEECC
T ss_pred             EEEecCc------------chHHHH-HHHHHhCCCEEEEEe
Confidence            8865431            234566 688999999998643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.44  E-value=0.0042  Score=48.12  Aligned_cols=99  Identities=14%  Similarity=0.040  Sum_probs=64.6

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc--hHHHHhc-CCCce
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND--ARAELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D--a~~~l~~-~~~~f  176 (257)
                      .+..+||++|+|+ |.++..+++..+..+|+++|.+++=.+.|+++-...       -++....|  .....+. ....+
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~-------~i~~~~~~~~~~~~~~~~~~~G~   99 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATD-------CLNPRELDKPVQDVITELTAGGV   99 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE-------EECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCc-------ccCCccchhhhhhhHhhhhcCCC
Confidence            4558999999988 667788888777779999999999999999862110       00000111  1222222 34679


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCC-cEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gil~~~~  219 (257)
                      |+++--.-            +.+.++. ..+.|+++ |.+++-.
T Consensus       100 d~vie~~G------------~~~~~~~-a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         100 DYSLDCAG------------TAQTLKA-AVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             SEEEESSC------------CHHHHHH-HHHTBCTTTCEEEECC
T ss_pred             cEEEEecc------------cchHHHH-HHHHhhcCCeEEEecC
Confidence            99975432            1244566 56789996 9988643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.41  E-value=0.003  Score=48.10  Aligned_cols=98  Identities=13%  Similarity=0.074  Sum_probs=61.9

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.++||++|+|.-+ ++..+++..+ .+|+++|.+++-.+.+++.-.       +.-+.....|..+.+......+|.+
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~Ga-------~~~i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKLGA-------SLTVNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhccCc-------cccccccchhHHHHHHHhhcCCccc
Confidence            456889999986543 4566777666 699999999999999998521       1111111234444444333446666


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +.+...            .+.++. ..+.|+|+|.+++-.
T Consensus        98 i~~~~~------------~~~~~~-~~~~l~~~G~iv~~G  124 (166)
T d1llua2          98 LVTAVS------------NSAFGQ-AIGMARRGGTIALVG  124 (166)
T ss_dssp             EECCSC------------HHHHHH-HHTTEEEEEEEEECC
T ss_pred             cccccc------------chHHHH-HHHHhcCCcEEEEEE
Confidence            555321            234566 578999999998643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0073  Score=46.23  Aligned_cols=95  Identities=17%  Similarity=0.119  Sum_probs=62.2

Q ss_pred             CCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025141          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD  177 (257)
                      +.++||+.|+  |.|..+.++++..+ .+|+++..+++-.+.++++-.       +.-+.....|..+.++.  ..+.+|
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~~~~~~~Ga-------~~vi~~~~~~~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQNGA-------HEVFNHREVNYIDKIKKYVGEKGID   99 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTC-------SEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred             CCCEEEEEeccccccccccccccccC-cccccccccccccccccccCc-------ccccccccccHHHHhhhhhccCCce
Confidence            4678999995  55667778888766 588888888988888887421       11111112455555543  346799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+-...             .+.++. ..+.|+|+|.++.-
T Consensus       100 ~v~d~~g-------------~~~~~~-~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         100 IIIEMLA-------------NVNLSK-DLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEEESCH-------------HHHHHH-HHHHEEEEEEEEEC
T ss_pred             EEeeccc-------------HHHHHH-HHhccCCCCEEEEE
Confidence            9885321             134555 56789999998864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.94  E-value=0.019  Score=44.22  Aligned_cols=100  Identities=8%  Similarity=0.024  Sum_probs=60.8

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-hHH-HHhc-CCCce
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARA-ELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D-a~~-~l~~-~~~~f  176 (257)
                      .+.+.||++|+|+.+ .+..++++.+..+|+++|.+++-++.|+++-...       -++....| ..+ ..+. ....+
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~-------~in~~~~~~~~~~~~~~~~g~G~  100 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE-------CISPKDSTKPISEVLSEMTGNNV  100 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSE-------EECGGGCSSCHHHHHHHHHTSCC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcE-------EECccccchHHHHHHHHhccccc
Confidence            346789999997655 4566667777789999999999999999974211       00001111 112 2222 34679


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+++.....     +      ..+... +...++.+|.+++-.
T Consensus       101 d~vi~~~g~-----~------~~~~~a-~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2         101 GYTFEVIGH-----L------ETMIDA-LASCHMNYGTSVVVG  131 (176)
T ss_dssp             CEEEECSCC-----H------HHHHHH-HTTSCTTTCEEEECS
T ss_pred             eEEEEeCCc-----h------HHHHHH-HHHhhcCCeEEEEEE
Confidence            998876532     1      122233 344556668887644

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.94  E-value=0.018  Score=43.51  Aligned_cols=86  Identities=17%  Similarity=0.154  Sum_probs=58.1

Q ss_pred             eEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025141          105 TIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (257)
Q Consensus       105 ~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D  182 (257)
                      ||.+||+|  ++.+++.+.+. + -+|+++|.+++.++.+++.-.          +.....+ .+.+    +..|+|++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~-g-~~V~~~d~~~~~~~~a~~~~~----------~~~~~~~-~~~~----~~~DiIila   64 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR-G-HYLIGVSRQQSTCEKAVERQL----------VDEAGQD-LSLL----QTAKIIFLC   64 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHTTS----------CSEEESC-GGGG----TTCSEEEEC
T ss_pred             EEEEEeecHHHHHHHHHHHHC-C-CEEEEEECCchHHHHHHHhhc----------cceeeee-cccc----ccccccccc
Confidence            79999998  66677777664 3 489999999999888876421          1111122 1222    568999987


Q ss_pred             CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      .+.         -...+.+++ +...|+++-+++-
T Consensus        65 vp~---------~~~~~vl~~-l~~~l~~~~iv~~   89 (165)
T d2f1ka2          65 TPI---------QLILPTLEK-LIPHLSPTAIVTD   89 (165)
T ss_dssp             SCH---------HHHHHHHHH-HGGGSCTTCEEEE
T ss_pred             CcH---------hhhhhhhhh-hhhhcccccceee
Confidence            542         125678888 7888998887753

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.91  E-value=0.028  Score=46.90  Aligned_cols=125  Identities=11%  Similarity=0.082  Sum_probs=82.1

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      .+-+||++-||.|++..-+.+. +...+.++|+|+..++..+.+++..           .++|..+.-...-...|+|+.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~~-----------~~~Di~~~~~~~~~~~Dll~g   77 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK-----------PEGDITQVNEKTIPDHDILCA   77 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC-----------CBSCGGGSCGGGSCCCSEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCCC-----------CcCchhcCchhhcceeeeeec
Confidence            4579999999999998877664 5667788999999999999988521           136766654443467999999


Q ss_pred             cCCC-CCC-C-------CcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          182 DLAD-PIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       182 D~~~-~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      .++- +.+ .       .+...|+ .++++.  -+.++|.=+++=|+...........+..+.+.|++.
T Consensus        78 gpPCq~fS~ag~~~g~~d~r~~l~-~~~~~~--i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~l  143 (327)
T d2c7pa1          78 GFPCQAFSISGKQKGFEDSRGTLF-FDIARI--VREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNEL  143 (327)
T ss_dssp             ECCCTTTCTTSCCCGGGSTTSCHH-HHHHHH--HHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHT
T ss_pred             ccccchhhhhhhhcCCcccchhHH-HHHHHH--HhccCCcEEecccchhhhhhccchhhHHhhhHHHhc
Confidence            8862 221 0       1112232 466664  457889876665652211112345677777888765

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.86  E-value=0.015  Score=44.62  Aligned_cols=100  Identities=9%  Similarity=-0.029  Sum_probs=59.9

Q ss_pred             CCCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc--hHHHHh-cCCCce
Q 025141          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND--ARAELE-SRKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D--a~~~l~-~~~~~f  176 (257)
                      .+.++||++|+|..++ +..+++..+..+|+++|.+++=++.++++=...       -++....|  ..+..+ ..+..+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~-------~i~~~~~d~~~~~~~~~~~~~G~   98 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE-------CLNPKDYDKPIYEVICEKTNGGV   98 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE-------EECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE-------EEcCCCchhHHHHHHHHhcCCCC
Confidence            4567899999987664 455666556679999999999999999862111       11111122  122222 345679


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+|+-....            .+.++..+...++++|.+++-.
T Consensus        99 d~vid~~g~------------~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          99 DYAVECAGR------------IETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             SEEEECSCC------------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             cEEEEcCCC------------chHHHHHHHHHHHhcCceEEEE
Confidence            999866431            1223331344455568877643

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=95.79  E-value=0.032  Score=46.12  Aligned_cols=119  Identities=11%  Similarity=0.085  Sum_probs=82.6

Q ss_pred             EEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCceeEEEEcCC
Q 025141          108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDLA  184 (257)
Q Consensus       108 ~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fDvIi~D~~  184 (257)
                      -.=.|+-.+++.+++.  ..+...+|+.|+-.+..+++|.      .+++++++..|+.+.+..   +.++--+|++|++
T Consensus        88 ~~YPGSP~ia~~llR~--~Drl~l~ELHp~e~~~L~~~~~------~~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPp  159 (271)
T d2oo3a1          88 SYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPH------FNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS  159 (271)
T ss_dssp             CEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCC------TTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred             CcCCCCHHHHHHhCCC--CCceEEeecCHHHHHHHHHHhc------cCCCceEEcCchHHHHHhhCCCCCCceEEEecCC
Confidence            3456777888888873  3699999999999999998875      368999999999999975   3456679999986


Q ss_pred             CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q 025141          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (257)
Q Consensus       185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~  243 (257)
                      -..   ......-.+.+.. +.++- |.|++++|.  |  ..+......+.+.|++.-+
T Consensus       160 YE~---k~ey~~v~~~l~~-a~kr~-~~g~~~iWY--P--i~~~~~~~~~~~~l~~~~~  209 (271)
T d2oo3a1         160 YER---KEEYKEIPYAIKN-AYSKF-STGLYCVWY--P--VVNKAWTEQFLRKMREISS  209 (271)
T ss_dssp             CCS---TTHHHHHHHHHHH-HHHHC-TTSEEEEEE--E--ESSHHHHHHHHHHHHHHCS
T ss_pred             cCC---HHHHHHHHHHHHH-HHHhC-CCceEEEEe--e--ccCcHHHHHHHHHHHhcCc
Confidence            311   1111111233343 22222 578898885  3  3466777888888887654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.74  E-value=0.11  Score=39.02  Aligned_cols=99  Identities=16%  Similarity=0.198  Sum_probs=64.4

Q ss_pred             CeEEEEeccchHHH--HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc--c-CCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          104 KTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--K-EAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       104 ~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~--~-~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      |+|-+||+|.-+.+  ..|.+. + -+|+++|.+++-++..++.-...  . ......+...+..|..+.+    +..|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~aD~   75 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK-G-QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDADV   75 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCSE
T ss_pred             CEEEEECccHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----cCCCE
Confidence            78999999987754  444443 3 48999999999988877642111  0 0001112233445655555    45899


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |++-.+.         ....+.+++ ++..|+++-+++..
T Consensus        76 iii~v~~---------~~~~~~~~~-i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          76 ILIVVPA---------IHHASIAAN-IASYISEGQLIILN  105 (184)
T ss_dssp             EEECSCG---------GGHHHHHHH-HGGGCCTTCEEEES
T ss_pred             EEEEEch---------hHHHHHHHH-hhhccCCCCEEEEe
Confidence            9986532         235678888 79999999887764

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.64  E-value=0.067  Score=43.95  Aligned_cols=124  Identities=10%  Similarity=0.075  Sum_probs=77.9

Q ss_pred             eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025141          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (257)
Q Consensus       105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~  184 (257)
                      +||++-+|.|++..-+.+. +...+.++|+|+...+..+.+++.          +++.+|..+.-...-.+.|+++.-++
T Consensus         2 k~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~~~----------~~~~~Di~~~~~~~~~~~dll~~g~P   70 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHSA----------KLIKGDISKISSDEFPKCDGIIGGPP   70 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHCCS----------EEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred             eEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCCC----------CCccCChhhCCHhHcccccEEeeccc
Confidence            7999999999987766553 556678999999999998887641          45668876653333357899998876


Q ss_pred             C-CCCC-CcccC------CchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025141          185 D-PIEG-GPCYK------LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (257)
Q Consensus       185 ~-~~~~-~p~~~------L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (257)
                      - +.+. +....      .+-.++++.  -+.++|.-+++=|+...........+..+++.+...
T Consensus        71 Cq~fS~ag~~~g~~d~r~~l~~~~~~~--i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~l  133 (324)
T d1dcta_          71 CQSWSEGGSLRGIDDPRGKLFYEYIRI--LKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNA  133 (324)
T ss_dssp             CTTTSSSSCCCCSSSHHHHHHHHHHHH--HHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchHHHHHHH--HHhhCCceeeccccccccccccchhhHHHHhHHhhC
Confidence            2 2211 11000      111355553  357899877776652211112345666777776653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.42  E-value=0.0084  Score=45.29  Aligned_cols=98  Identities=16%  Similarity=0.121  Sum_probs=60.6

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.++||+.|+|+-+ .+..+++..+ .+|++++.+++-.+.++++-...       -+.....|..+-++.....+|.+
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g-~~v~~~~~~~~r~~~~k~~Ga~~-------~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADL-------VVNPLKEDAAKFMKEKVGGVHAA   97 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTCSE-------EECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCC-CeEeccCCCHHHhhhhhhcCcce-------ecccccchhhhhcccccCCCceE
Confidence            456889999987655 4556666655 48999999999999998852110       00001124444444433445555


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +.|...            .+.+.. ..+.|+|+|.+++-.
T Consensus        98 v~~~~~------------~~~~~~-a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          98 VVTAVS------------KPAFQS-AYNSIRRGGACVLVG  124 (168)
T ss_dssp             EESSCC------------HHHHHH-HHHHEEEEEEEEECC
T ss_pred             EeecCC------------HHHHHH-HHHHhccCCceEecc
Confidence            566431            133455 567899999988754

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.19  E-value=0.03  Score=43.32  Aligned_cols=95  Identities=22%  Similarity=0.214  Sum_probs=59.8

Q ss_pred             CeEEEEe--ccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025141          104 KTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (257)
Q Consensus       104 ~~VL~IG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi  180 (257)
                      +.||+.|  +|-|..+.++++..+...|+++...++-.....+.+..      +.-++....|..+.++. .++.+|+|+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga------d~vi~~~~~~~~~~~~~~~~~GvDvv~  105 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF------DAAVNYKTGNVAEQLREACPGGVDVYF  105 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC------SEEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc------eEEeeccchhHHHHHHHHhccCceEEE
Confidence            6799987  56778899999987766777766665554433332221      11222233456666655 456799997


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                       |..     +       .+.+.. ..+.|+++|.++.-
T Consensus       106 -D~v-----G-------g~~~~~-~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         106 -DNV-----G-------GDISNT-VISQMNENSHIILC  129 (187)
T ss_dssp             -ESS-----C-------HHHHHH-HHTTEEEEEEEEEC
T ss_pred             -ecC-----C-------chhHHH-HhhhccccccEEEe
Confidence             322     1       234566 57899999999853

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.19  E-value=0.016  Score=46.46  Aligned_cols=60  Identities=12%  Similarity=0.104  Sum_probs=41.7

Q ss_pred             EEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCc-----cc---CCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          159 ELVINDARAELESR-KESYDVIIGDLADPIEGGP-----CY---KLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       159 ~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~p-----~~---~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +++++|+++.++.. ++..|+|+.|||-.....-     ..   .-+..+++++ ++++|+|+|.++++.
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e-~~rvLk~~g~~~~~~   74 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDK-VLDKLDKDGSLYIFN   74 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHH-hhhccccCccccccc
Confidence            68999999999875 4779999999873211000     00   0113457788 699999999887653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.04  E-value=0.018  Score=43.98  Aligned_cols=95  Identities=19%  Similarity=0.169  Sum_probs=60.7

Q ss_pred             CCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025141          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD  177 (257)
                      +.++||+.|+  |.|..+.+++++.+ .++.++.-+++-.+.++++-.       +.-+.....|..+.+++  .+..+|
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~~~~l~~~Ga-------~~vi~~~~~~~~~~v~~~t~~~g~d   96 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRLGV-------EYVGDSRSVDFADEILELTDGYGVD   96 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTTCC-------SEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEECCCCCcccccchhhcccc-ccceeeecccccccccccccc-------cccccCCccCHHHHHHHHhCCCCEE
Confidence            3578999874  55567778888765 577777778888888887521       11111123455565554  346799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      +|+.-..     +        +.++. +.+.|+++|.++.-
T Consensus        97 ~v~d~~g-----~--------~~~~~-~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          97 VVLNSLA-----G--------EAIQR-GVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEECCC-----T--------HHHHH-HHHTEEEEEEEEEC
T ss_pred             EEEeccc-----c--------hHHHH-HHHHhcCCCEEEEE
Confidence            9995432     1        33455 46789999999863

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.98  E-value=0.0062  Score=49.67  Aligned_cols=64  Identities=20%  Similarity=0.142  Sum_probs=44.7

Q ss_pred             CeEEEEcchHHHHhcCC-CceeEEEEcCCCCCCC----Cccc-CCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          157 RLELVINDARAELESRK-ESYDVIIGDLADPIEG----GPCY-KLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       157 rv~i~~~Da~~~l~~~~-~~fDvIi~D~~~~~~~----~p~~-~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      +-.++.+|+++.|+..+ +..|+|+.|||-....    .... .-+..+++.+ ++++|+|+|.++++.+.
T Consensus         4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e-~~rvLk~~G~~~~~~~~   73 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAE-AERVLSPTGSIAIFGGL   73 (279)
T ss_dssp             EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHH-HHHHEEEEEEEEEEECS
T ss_pred             cceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHH-HHHHhCCCccEEEecCc
Confidence            34678899999998854 7899999999732110    0000 1123567778 69999999999988653

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.019  Score=43.72  Aligned_cols=96  Identities=10%  Similarity=0.044  Sum_probs=61.7

Q ss_pred             CCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025141          102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD  177 (257)
                      +.++||+.|+|+  |.++.++++..+ .+|++++.+++-.+.+++.-.       +.-+.....|..+.+++  .+..+|
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~~~~~~lGa-------~~vi~~~~~d~~~~v~~~t~g~g~d   99 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKAGA-------WQVINYREEDLVERLKEITGGKKVR   99 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHHHHHHHhcCC-------eEEEECCCCCHHHHHHHHhCCCCeE
Confidence            457899987764  557778888765 689999999999999987521       11111123455555544  246799


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+--. .    +        +.+.. ..+.|+++|.++...
T Consensus       100 ~v~d~~-g----~--------~~~~~-~~~~l~~~G~~v~~g  127 (179)
T d1qora2         100 VVYDSV-G----R--------DTWER-SLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEEECS-C----G--------GGHHH-HHHTEEEEEEEEECC
T ss_pred             EEEeCc-c----H--------HHHHH-HHHHHhcCCeeeecc
Confidence            766432 1    1        12344 467899999887643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.71  E-value=0.063  Score=40.47  Aligned_cols=99  Identities=7%  Similarity=-0.011  Sum_probs=61.3

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE--EEcchHHHHhc-CCCce
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i--~~~Da~~~l~~-~~~~f  176 (257)
                      .+..+||+.|+|+.+ ++.++++..+...|++++.+++-.+.++++=...       -+..  ...+..+.++. ....+
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~-------~i~~~~~~~~~~~~~~~~~~~g~   99 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE-------CINPQDFSKPIQEVLIEMTDGGV   99 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE-------EECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcE-------EEeCCchhhHHHHHHHHHcCCCC
Confidence            456789999886433 4566666666679999999999999999852100       0000  01234444443 34679


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+|+-....            ...++. +...+++||.+++-.
T Consensus       100 D~vid~~G~------------~~~~~~-~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2         100 DYSFECIGN------------VKVMRA-ALEACHKGWGVSVVV  129 (176)
T ss_dssp             SEEEECSCC------------HHHHHH-HHHTBCTTTCEEEEC
T ss_pred             cEeeecCCC------------HHHHHH-HHHhhcCCceeEEEE
Confidence            999865321            234555 567888887665443

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.64  E-value=0.061  Score=40.74  Aligned_cols=46  Identities=13%  Similarity=0.101  Sum_probs=35.9

Q ss_pred             CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhh
Q 025141          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~  146 (257)
                      .+..+||++|+|+++ ++..+++..+..+|+++|.+++-.+.++++-
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G   73 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG   73 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence            345789999987655 4555556566689999999999999999863

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.59  E-value=0.021  Score=44.12  Aligned_cols=96  Identities=14%  Similarity=0.190  Sum_probs=57.4

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fD  177 (257)
                      ++..+||+-|+  |-|..+.++++..+ .+|+++--+++-.+.+++.-...       -+. +..+..+.++. .++.||
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~G-a~Viat~~s~~k~~~~~~lGa~~-------vi~-~~~~~~~~~~~~~~~gvD  100 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAAEHDYLRVLGAKE-------VLA-REDVMAERIRPLDKQRWA  100 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTTCHHHHHHTTCSE-------EEE-CC---------CCSCCEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcC-CceEEecCchHHHHHHHhcccce-------eee-cchhHHHHHHHhhccCcC
Confidence            34678999885  44557788888766 58888888888888888752110       000 11111122222 357899


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +|+-....     +        .+.. ..+.|+|+|.++.-.
T Consensus       101 ~vid~vgg-----~--------~~~~-~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         101 AAVDPVGG-----R--------TLAT-VLSRMRYGGAVAVSG  128 (176)
T ss_dssp             EEEECSTT-----T--------THHH-HHHTEEEEEEEEECS
T ss_pred             EEEEcCCc-----h--------hHHH-HHHHhCCCceEEEee
Confidence            87754331     1        1345 467999999998643

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.52  E-value=0.028  Score=46.31  Aligned_cols=64  Identities=27%  Similarity=0.343  Sum_probs=45.0

Q ss_pred             CeEEEEcchHHHHhcCC-CceeEEEEcCCCCCCCCc-ccCC-------chHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          157 RLELVINDARAELESRK-ESYDVIIGDLADPIEGGP-CYKL-------YTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       157 rv~i~~~Da~~~l~~~~-~~fDvIi~D~~~~~~~~p-~~~L-------~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      .-+++++|+++.|+..+ ++.|+|+.|||-.....- ....       +-.+.+.+ ++++|+|+|.++++...
T Consensus        12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~-~~rvLk~~G~i~i~~~~   84 (320)
T d1booa_          12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKV-VNKKLKPDGSFVVDFGG   84 (320)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEECC
T ss_pred             CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHH-HHHhCcccCcccccccc
Confidence            44899999999998854 789999999873211000 0001       12456787 69999999999988754

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.13  Score=42.57  Aligned_cols=138  Identities=16%  Similarity=0.191  Sum_probs=79.1

Q ss_pred             CCCeEEEEeccchHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025141          102 NPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD  177 (257)
                      +|-+|+++.+|.|++..-+.+. +.  .-+.++|+|+...+..+.+++         ...++.+|..+....  .....|
T Consensus         1 ~p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~~---------~~~~~~~di~~~~~~~~~~~~~D   70 (343)
T d1g55a_           1 EPLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP---------HTQLLAKTIEGITLEEFDRLSFD   70 (343)
T ss_dssp             CCEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECSCGGGCCHHHHHHHCCS
T ss_pred             CCCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHCC---------CCCcccCchhhCCHhHcCCCCcc
Confidence            3668999999999987665443 32  346799999999999988764         234555665543211  113689


Q ss_pred             EEEEcCCC-CCC-C-------CcccCCchHHHHHHHHcCcC--CCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceE
Q 025141          178 VIIGDLAD-PIE-G-------GPCYKLYTKSFYEFVVKPRL--NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGC  246 (257)
Q Consensus       178 vIi~D~~~-~~~-~-------~p~~~L~t~ef~~~~~~~~L--~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~  246 (257)
                      +++-.++- +.+ .       .+...|+ .++++. ++ .+  +|.-+++=|+  ++ +.....+..+.+.|++.-=.+.
T Consensus        71 ll~ggpPCq~fS~ag~~~~~~d~r~~l~-~~~~~~-i~-~~~~kPk~~i~ENV--~~-l~~~~~~~~i~~~l~~~GY~v~  144 (343)
T d1g55a_          71 MILMSPPCQPFTRIGRQGDMTDSRTNSF-LHILDI-LP-RLQKLPKYILLENV--KG-FEVSSTRDLLIQTIENCGFQYQ  144 (343)
T ss_dssp             EEEECCC------------------CHH-HHHHHH-GG-GCSSCCSEEEEEEE--TT-GGGSHHHHHHHHHHHHTTEEEE
T ss_pred             EEEeeccccccccccccccccccccccc-chhhhh-Hh-hhcCCCceeeeecc--CC-cccchhhHHHHhhhhccccccc
Confidence            99988772 111 0       1111232 566665 44 34  6876555454  22 2334556677777777632333


Q ss_pred             EEeecCccc
Q 025141          247 CALFSSYSF  255 (257)
Q Consensus       247 ~~~~~~~~~  255 (257)
                      ........|
T Consensus       145 ~~vlna~dy  153 (343)
T d1g55a_         145 EFLLSPTSL  153 (343)
T ss_dssp             EEEECGGGG
T ss_pred             eeeeecccc
Confidence            333333333

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.22  E-value=0.068  Score=38.12  Aligned_cols=45  Identities=22%  Similarity=0.189  Sum_probs=31.7

Q ss_pred             CCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEEC--------CHHHHHHHHhhhh
Q 025141          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDI--------DEEVVEFCKSYLV  147 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEi--------d~~vi~~a~~~~~  147 (257)
                      .+|++|++||+|-=+  ++..+.+ .+ .+||.+|.        |+++.+..++.+.
T Consensus        20 ~~p~~v~IiGgG~iG~E~A~~l~~-~g-~~Vtlv~~~~~il~~~d~~~~~~~~~~l~   74 (117)
T d1onfa2          20 KESKKIGIVGSGYIAVELINVIKR-LG-IDSYIFARGNRILRKFDESVINVLENDMK   74 (117)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHT-TT-CEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCchHHHHHHHHHHh-cc-ccceeeehhccccccccHHHHHHHHHHHH
Confidence            458999999998633  3333333 44 69999996        6777777777664

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.12  E-value=0.046  Score=44.86  Aligned_cols=47  Identities=15%  Similarity=0.123  Sum_probs=41.4

Q ss_pred             cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 025141           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (257)
                      ..++..-|||.-+|+|+++.++.+..  .+.+++|++++.+++|++++.
T Consensus       247 ~s~~gdiVlDpF~GSGTT~~AA~~lg--R~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         247 LTEPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             HCCTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGGS
T ss_pred             cccCCCEEEecCCCCcHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHHH
Confidence            34667899999999999999999863  689999999999999998874

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.07  E-value=0.12  Score=39.16  Aligned_cols=92  Identities=12%  Similarity=0.107  Sum_probs=58.3

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      .+.++||+.|+  |.|..+.++++..+ .+|++++.+++-.+.+++.-.         ..-+-..|..+.+. ..+.+|+
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~~~~~~~~~~lGa---------~~~i~~~~~~~~~~-~~~g~D~   94 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLALPLALGA---------EEAATYAEVPERAK-AWGGLDL   94 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSHHHHHTTC---------SEEEEGGGHHHHHH-HTTSEEE
T ss_pred             CCCCEEEEEeccccchhhhhhhhcccc-ccccccccccccccccccccc---------ceeeehhhhhhhhh-ccccccc
Confidence            45678999885  34567778888776 589999999888888886411         11122233333332 2467999


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+ |..     ++.        +.. ..+.|+|+|.++.-
T Consensus        95 v~-d~~-----G~~--------~~~-~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          95 VL-EVR-----GKE--------VEE-SLGLLAHGGRLVYI  119 (171)
T ss_dssp             EE-ECS-----CTT--------HHH-HHTTEEEEEEEEEC
T ss_pred             cc-ccc-----chh--------HHH-HHHHHhcCCcEEEE
Confidence            86 432     210        244 45789999998863

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.06  E-value=0.17  Score=36.26  Aligned_cols=95  Identities=17%  Similarity=0.179  Sum_probs=60.2

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhcC-CCceeEEE
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESYDVII  180 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~--~~l~~~-~~~fDvIi  180 (257)
                      |.++++|+|  ..++++++.-....|.+||.|++..+..++           ..+.++.+|+.  +.++.. -++.+.++
T Consensus         1 kHivI~G~g--~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWS--ESTLECLRELRGSEVFVLAEDENVRKKVLR-----------SGANFVHGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCC--HHHHHHHHTSCGGGEEEEESCTTHHHHHHH-----------TTCEEEESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHcCCCCEEEEcchHHHHHHHh-----------cCccccccccCCHHHHHHhhhhcCcEEE
Confidence            468888874  556666654333578999999998877653           24678889883  445443 37788888


Q ss_pred             EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025141          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (257)
Q Consensus       181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~  221 (257)
                      +...+..     ..+    +.-. ..+.+.|...+++....
T Consensus        68 ~~~~~d~-----~n~----~~~~-~~r~~~~~~~iia~~~~   98 (129)
T d2fy8a1          68 VNLESDS-----ETI----HCIL-GIRKIDESVRIIAEAER   98 (129)
T ss_dssp             ECCSSHH-----HHH----HHHH-HHHHHCSSSCEEEECSS
T ss_pred             Eeccchh-----hhH----HHHH-HHHHHCCCceEEEEEcC
Confidence            8665321     111    1222 34568888877776543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.88  E-value=0.16  Score=36.44  Aligned_cols=68  Identities=24%  Similarity=0.327  Sum_probs=45.4

Q ss_pred             eEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhcCC-CceeEE
Q 025141          105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESRK-ESYDVI  179 (257)
Q Consensus       105 ~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~--~~l~~~~-~~fDvI  179 (257)
                      +|+++|+|.=+  +++.|.+ .+ .+|++||.||+.++.+++.+          .+.++.+|+.  +.++..+ +..|.+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~-~g-~~v~vid~d~~~~~~~~~~~----------~~~vi~Gd~~~~~~l~~~~i~~a~~v   69 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSE-KG-HDIVLIDIDKDICKKASAEI----------DALVINGDCTKIKTLEDAGIEDADMY   69 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TT-CEEEEEESCHHHHHHHHHHC----------SSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHH-CC-CCcceecCChhhhhhhhhhh----------hhhhccCcccchhhhhhcChhhhhhh
Confidence            78999985432  2334433 33 58999999999988776532          3467888875  4555443 678988


Q ss_pred             EEcCC
Q 025141          180 IGDLA  184 (257)
Q Consensus       180 i~D~~  184 (257)
                      +.-..
T Consensus        70 v~~t~   74 (132)
T d1lssa_          70 IAVTG   74 (132)
T ss_dssp             EECCS
T ss_pred             cccCC
Confidence            87543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.82  E-value=0.01  Score=44.46  Aligned_cols=51  Identities=22%  Similarity=0.465  Sum_probs=37.3

Q ss_pred             HHHhhcCCCCCeEEEEeccchHHHH--HHHhcCCCcEEEEE--ECCHHHHHHHHhhh
Q 025141           94 HPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMC--DIDEEVVEFCKSYL  146 (257)
Q Consensus        94 ~~~l~~~~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~V--Eid~~vi~~a~~~~  146 (257)
                      .+|+....+.++||+||+|.-+..+  .+++. + ++|++|  |+++++.+.+.+..
T Consensus         4 ~lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~-G-A~VtVvap~~~~~l~~~~~~~~   58 (150)
T d1kyqa1           4 SLQLAHQLKDKRILLIGGGEVGLTRLYKLMPT-G-CKLTLVSPDLHKSIIPKFGKFI   58 (150)
T ss_dssp             CEEEEECCTTCEEEEEEESHHHHHHHHHHGGG-T-CEEEEEEEEECTTHHHHHCGGG
T ss_pred             cchhheeeCCCEEEEECCCHHHHHHHHHHHHC-C-CEEEEEeCCCCHHHHHHHHhcc
Confidence            4567777889999999998766533  33333 3 688888  88899988877653

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.75  E-value=0.066  Score=42.55  Aligned_cols=45  Identities=20%  Similarity=0.207  Sum_probs=39.9

Q ss_pred             CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhh
Q 025141          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~  146 (257)
                      ..+..-|||--+|+|+++.++.+..  .+.+++|+|++.+++|++.+
T Consensus       210 s~~gd~VlDpF~GSGTT~~aa~~~~--R~~ig~El~~~y~~~a~~Rl  254 (256)
T d1g60a_         210 SNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVL  254 (256)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCchHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHH
Confidence            4566789999999999999998863  68999999999999999875

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.65  E-value=0.098  Score=39.85  Aligned_cols=96  Identities=18%  Similarity=0.243  Sum_probs=62.2

Q ss_pred             CCCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hc-CCCce
Q 025141          101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ES-RKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-~~-~~~~f  176 (257)
                      .+.++||+.|+++  |..+.++++..+ .+|+++.-+++-.+.+++.-..       .-+.....|..+.+ +. ..+.+
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~Ga~-------~vi~~~~~~~~~~~~~~~~~~Gv   99 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQIGFD-------AAFNYKTVNSLEEALKKASPDGY   99 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCS-------EEEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHHHHHHHhhhhh-------hhcccccccHHHHHHHHhhcCCC
Confidence            3457899988855  446778888776 5999999999888888875211       01111122223332 22 34679


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      |+|+-..      +       .+.++. ..+.|+|+|.++.-
T Consensus       100 d~v~D~v------G-------~~~~~~-~~~~l~~~G~~v~~  127 (182)
T d1v3va2         100 DCYFDNV------G-------GEFLNT-VLSQMKDFGKIAIC  127 (182)
T ss_dssp             EEEEESS------C-------HHHHHH-HGGGEEEEEEEEEC
T ss_pred             ceeEEec------C-------chhhhh-hhhhccCCCeEEee
Confidence            9987432      1       245677 68899999999863

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.62  E-value=0.042  Score=38.87  Aligned_cols=100  Identities=15%  Similarity=0.230  Sum_probs=56.8

Q ss_pred             HHHhhcCCCCCeEEEEeccchHHH--HHHHhcCCCcEEEEEEC--CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 025141           94 HPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDI--DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL  169 (257)
Q Consensus        94 ~~~l~~~~~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEi--d~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l  169 (257)
                      +.|+.+..+.++||++|+|.=+..  +.+++. + ++|++++.  +++....++           ..+++++..+...  
T Consensus         3 ~~Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~-g-a~v~v~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~--   67 (113)
T d1pjqa1           3 HLPIFCQLRDRDCLIVGGGDVAERKARLLLEA-G-ARLTVNALTFIPQFTVWAN-----------EGMLTLVEGPFDE--   67 (113)
T ss_dssp             CEEEEECCBTCEEEEECCSHHHHHHHHHHHHT-T-BEEEEEESSCCHHHHHHHT-----------TTSCEEEESSCCG--
T ss_pred             ccceEEEeCCCEEEEECCCHHHHHHHHHHHHC-C-CeEEEEeccCChHHHHHHh-----------cCCceeeccCCCH--
Confidence            356667778999999999976653  344443 3 68887754  344433332           2466666544221  


Q ss_pred             hcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                       ..-..+|+|+....++        -.+.+.++     ..++.|+++-....|
T Consensus        68 -~dl~~~~lv~~at~d~--------~~n~~i~~-----~a~~~~ilVNv~D~p  106 (113)
T d1pjqa1          68 -TLLDSCWLAIAATDDD--------TVNQRVSD-----AAESRRIFCNVVDAP  106 (113)
T ss_dssp             -GGGTTCSEEEECCSCH--------HHHHHHHH-----HHHHTTCEEEETTCT
T ss_pred             -HHhCCCcEEeecCCCH--------HHHHHHHH-----HHHHcCCEEEeCCCh
Confidence             1125688888775432        12334444     445568887444433

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.40  E-value=0.06  Score=43.40  Aligned_cols=48  Identities=19%  Similarity=0.222  Sum_probs=42.0

Q ss_pred             cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh
Q 025141           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV  148 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~  148 (257)
                      ...+..-|||--+|+|+++.++.+..  .+.+++|+|+...++|++++..
T Consensus       204 ~s~~gdiVLDpF~GSGTT~~Aa~~lg--R~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         204 LSHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             HSCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHH
T ss_pred             hcCCCCEEEecCCCCcHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHH
Confidence            34567889999999999999999873  6999999999999999998763

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.10  E-value=0.47  Score=35.86  Aligned_cols=78  Identities=18%  Similarity=0.173  Sum_probs=43.7

Q ss_pred             CCeEEEEeccchHHH---HHHHh-cCC--CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025141          103 PKTIFIMGGGEGSTA---REILR-HKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~---~~l~~-~~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f  176 (257)
                      .-+|.+||+|+-+.+   ..+++ ...  ..++..+|+|++-++...+.+.........+.--....|-.+-++    ..
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~----~A   78 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFT----DV   78 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHS----SC
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccC----CC
Confidence            347999999875432   23333 221  258999999999876433332211000012222334557666553    46


Q ss_pred             eEEEEcCC
Q 025141          177 DVIIGDLA  184 (257)
Q Consensus       177 DvIi~D~~  184 (257)
                      |+|++-+-
T Consensus        79 D~Vvitag   86 (167)
T d1u8xx1          79 DFVMAHIR   86 (167)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99998764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.17  Score=38.33  Aligned_cols=120  Identities=9%  Similarity=0.043  Sum_probs=65.3

Q ss_pred             CCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      -..|+|+++|.|.=+  +++.+.. .+ .+|+++|+||.-  ..+....-         .++  ....+.    -..-|+
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg-~G-~~V~v~e~dp~~--al~A~~dG---------~~v--~~~~~a----~~~adi   82 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRG-FG-ARVIITEIDPIN--ALQAAMEG---------YEV--TTMDEA----CQEGNI   82 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH-TT-CEEEEECSCHHH--HHHHHHTT---------CEE--CCHHHH----TTTCSE
T ss_pred             ecCCEEEEeccccccHHHHHHHHh-CC-CeeEeeecccch--hHHhhcCc---------eEe--eehhhh----hhhccE
Confidence            467899999998644  3334333 34 699999999943  33332211         011  112222    245688


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecC
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSS  252 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~  252 (257)
                      |++-.-.       .+..+.+-|+     .||+ |.++.|.++-+..-+.+.+.+....-+++-|++..|..+.
T Consensus        83 vvtaTGn-------~~vI~~eh~~-----~MKd-gaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~l~d  143 (163)
T d1li4a1          83 FVTTTGC-------IDIILGRHFE-----QMKD-DAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKN  143 (163)
T ss_dssp             EEECSSC-------SCSBCHHHHT-----TCCT-TEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEECTT
T ss_pred             EEecCCC-------ccchhHHHHH-----hccC-CeEEEEeccccceecHHHHhhccceeeeecCCeeEEEeCC
Confidence            8876432       2345565544     4665 5555688764322233333332222335678888887753

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=0.52  Score=37.77  Aligned_cols=78  Identities=18%  Similarity=0.172  Sum_probs=52.4

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh--
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~--  170 (257)
                      +.|.||+.|+++|.   +++.+++. + .+|..++.+++-++.+.+.+...+   ...++..+..|..+      .+.  
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~-G-~~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~Dls~~~~v~~~v~~~   83 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQ-G-LKVVGCARTVGNIEELAAECKSAG---YPGTLIPYRCDLSNEEDILSMFSAI   83 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEEccCCCHHHHHHHHHHH
Confidence            56889999988775   45555554 4 589999999988777666554321   12467777777633      222  


Q ss_pred             -cCCCceeEEEEcCC
Q 025141          171 -SRKESYDVIIGDLA  184 (257)
Q Consensus       171 -~~~~~fDvIi~D~~  184 (257)
                       +.-++.|+++.++.
T Consensus        84 ~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          84 RSQHSGVDICINNAG   98 (257)
T ss_dssp             HHHHCCCSEEEECCC
T ss_pred             HHhcCCCCEEEeccc
Confidence             22367999999875

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=91.87  E-value=0.67  Score=34.30  Aligned_cols=81  Identities=17%  Similarity=0.113  Sum_probs=42.5

Q ss_pred             CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      .+.++|-+||+|. |.....++...+..++..+|+++..++....-+.................|-.+-+    ..-|+|
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~adiV   80 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL----TGADCV   80 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH----TTCSEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhh----cCCCeE
Confidence            4568999999876 33333333333456899999998765543322211000011122222333333333    346898


Q ss_pred             EEcCCC
Q 025141          180 IGDLAD  185 (257)
Q Consensus       180 i~D~~~  185 (257)
                      ++....
T Consensus        81 vitag~   86 (154)
T d1pzga1          81 IVTAGL   86 (154)
T ss_dssp             EECCSC
T ss_pred             EEeccc
Confidence            887753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.75  E-value=0.12  Score=38.77  Aligned_cols=45  Identities=16%  Similarity=0.185  Sum_probs=35.0

Q ss_pred             CCCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhh
Q 025141          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (257)
                      .+..+||++|+|+++. +..+++.....+|+++|.+++-.+.++++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            3457899999988554 44455556667999999999999999985

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=91.65  E-value=0.096  Score=40.59  Aligned_cols=132  Identities=12%  Similarity=0.200  Sum_probs=71.5

Q ss_pred             CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhh---h-hccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025141          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL---V-VNKEAFSDPRLELVINDARAELESRKESYDVI  179 (257)
Q Consensus       104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~---~-~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI  179 (257)
                      ++|.+||+|.-+.+...+-.....+|+.+..|++.++..++.-   . +++- ...++++ ...|..+.++    .-|+|
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~-~l~~~i~-~t~~l~~a~~----~ad~i   81 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGV-QLASNIT-FTSDVEKAYN----GAEII   81 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTC-BCCTTEE-EESCHHHHHT----TCSCE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccc-ccccccc-cchhhhhccC----CCCEE
Confidence            4799999999887654333222348999999999998765431   1 1111 1234555 3456555553    35999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCc-----CCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCcc
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPR-----LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYS  254 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~-----L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~  254 (257)
                      ++..+.         -..+++++. ++..     ++++-.++ .+ +.+ + .......+.+.+.+.++.-.....++|+
T Consensus        82 iiavPs---------~~~~~~~~~-~~~~~~~~~~~~~~~ii-~~-tKG-i-e~~t~~~~seii~e~~~~~~~~vlsGP~  147 (189)
T d1n1ea2          82 LFVIPT---------QFLRGFFEK-SGGNLIAYAKEKQVPVL-VC-TKG-I-ERSTLKFPAEIIGEFLPSPLLSVLAGPS  147 (189)
T ss_dssp             EECSCH---------HHHHHHHHH-HCHHHHHHHHHHTCCEE-EC-CCS-C-CTTTCCCHHHHHTTTSCGGGEEEEESSC
T ss_pred             EEcCcH---------HHHHHHHHH-HHhhhhhhhccCCcEEE-EE-ECC-C-ccCCccchhhHHHHHhcccceEEEecCC
Confidence            887542         123455655 4432     23333333 32 111 1 1111223344566777765555567776


Q ss_pred             c
Q 025141          255 F  255 (257)
Q Consensus       255 ~  255 (257)
                      |
T Consensus       148 ~  148 (189)
T d1n1ea2         148 F  148 (189)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=91.34  E-value=1  Score=33.42  Aligned_cols=102  Identities=18%  Similarity=0.261  Sum_probs=59.9

Q ss_pred             CCCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHH-HHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025141          100 HPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~v-i~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f  176 (257)
                      ..+.++||+||.|.=+  ++..+..+ +..+++++--+.+- .++++++ +..         ..-..+..+.+    .+|
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt~~ka~~l~~~~-~~~---------~~~~~~~~~~l----~~~   85 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDL-GGE---------AVRFDELVDHL----ARS   85 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHH-TCE---------ECCGGGHHHHH----HTC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCcHHHHHHHHHhh-hcc---------cccchhHHHHh----ccC
Confidence            4578899999986433  23444443 55689998887443 3455543 211         01123444444    469


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~  222 (257)
                      |+||.....+      ..+.+.+.++..++.+-.....+++-.+-|
T Consensus        86 Divi~atss~------~~ii~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          86 DVVVSATAAP------HPVIHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             SEEEECCSSS------SCCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             CEEEEecCCC------CccccHhhhHHHHHhcccCCCeEEEeecCC
Confidence            9999876533      246788888763343333456777776544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.00  E-value=0.2  Score=35.87  Aligned_cols=69  Identities=29%  Similarity=0.390  Sum_probs=44.8

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcC-CCceeE
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYDV  178 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~-~~~fDv  178 (257)
                      |+++++|+|.=+  +++.|.+. + .+|+++|.|++.++.+++.           ....+.+|+.+  .+... -.+.|.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~-g-~~vvvid~d~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~a~i~~a~~   67 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRM-G-HEVLAVDINEEKVNAYASY-----------ATHAVIANATEENELLSLGIRNFEY   67 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-T-CCCEEEESCHHHHHHTTTT-----------CSEEEECCTTCTTHHHHHTGGGCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-CeEEEecCcHHHHHHHHHh-----------CCcceeeecccchhhhccCCccccE
Confidence            578999887533  34444443 3 4799999999998887643           22456677643  23222 257898


Q ss_pred             EEEcCCC
Q 025141          179 IIGDLAD  185 (257)
Q Consensus       179 Ii~D~~~  185 (257)
                      +++..++
T Consensus        68 vi~~~~~   74 (134)
T d2hmva1          68 VIVAIGA   74 (134)
T ss_dssp             EEECCCS
T ss_pred             EEEEcCc
Confidence            8887654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.83  E-value=0.22  Score=38.18  Aligned_cols=79  Identities=10%  Similarity=0.044  Sum_probs=49.7

Q ss_pred             CCCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025141          100 HPNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f  176 (257)
                      .-+.|+||+.|+++|.   +++.++++ + .+|+.++.+++-.+...+.+....   ...-..+-..|.. -+++.-++.
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~-G-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~-~~~~~~~~i   93 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGE-G-AEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDA-SRAEAVKGA   93 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHH-HHHHHTTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhh-c-cchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHH-HHHHHhcCc
Confidence            3468999999987654   45566664 4 589999999988877777664321   1112233333322 233334678


Q ss_pred             eEEEEcCC
Q 025141          177 DVIIGDLA  184 (257)
Q Consensus       177 DvIi~D~~  184 (257)
                      |++|..+.
T Consensus        94 Dilin~Ag  101 (191)
T d1luaa1          94 HFVFTAGA  101 (191)
T ss_dssp             SEEEECCC
T ss_pred             CeeeecCc
Confidence            99998764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=90.63  E-value=0.055  Score=40.17  Aligned_cols=93  Identities=11%  Similarity=0.020  Sum_probs=52.5

Q ss_pred             CeEEEEeccc-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          104 KTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       104 ~~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      .||++||+|. |+ ++..|++. + -+|+.++.++...+..    ...... ..........+..+.+    +.+|+|++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~-G-~~V~~~~r~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~----~~~D~iii   69 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ-G-HEVQGWLRVPQPYCSV----NLVETD-GSIFNESLTANDPDFL----ATSDLLLV   69 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSSCCSEEEE----EEECTT-SCEEEEEEEESCHHHH----HTCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-C-CceEEEEcCHHHhhhh----ccccCC-ccccccccccchhhhh----cccceEEE
Confidence            3799999987 33 34455553 3 4899999887532211    101100 0111122223323333    46899998


Q ss_pred             cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      -...         ..+.+.++. ++..++++..++.
T Consensus        70 ~vka---------~~~~~~~~~-l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          70 TLKA---------WQVSDAVKS-LASTLPVTTPILL   95 (167)
T ss_dssp             CSCG---------GGHHHHHHH-HHTTSCTTSCEEE
T ss_pred             eecc---------cchHHHHHh-hccccCcccEEee
Confidence            7532         235678888 7889998886654

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=90.60  E-value=0.06  Score=43.90  Aligned_cols=113  Identities=11%  Similarity=-0.014  Sum_probs=72.0

Q ss_pred             CCCCeEEEEeccchHHHHHHHhcC-----C-----------------------------------CcEEEEEECCHHHHH
Q 025141          101 PNPKTIFIMGGGEGSTAREILRHK-----T-----------------------------------VEKVVMCDIDEEVVE  140 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l~~~~-----~-----------------------------------~~~v~~VEid~~vi~  140 (257)
                      ..+..++|--||+|+++.+++-..     +                                   ..++.+.|+|+.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            345679999999999988766410     0                                   023567888888888


Q ss_pred             HHHh---hhhhccCCCCCCCeEEEEcchHHHHh----cCCCceeEEEEcCCCCCCCCc----ccCCchHHHHHHHHcCcC
Q 025141          141 FCKS---YLVVNKEAFSDPRLELVINDARAELE----SRKESYDVIIGDLADPIEGGP----CYKLYTKSFYEFVVKPRL  209 (257)
Q Consensus       141 ~a~~---~~~~~~~~~~~~rv~i~~~Da~~~l~----~~~~~fDvIi~D~~~~~~~~p----~~~L~t~ef~~~~~~~~L  209 (257)
                      .|++   +....+   .+..+++...|.++...    ..+..+++|++|+|-....+.    ...++ .+|+.. +++.|
T Consensus       129 ~A~~~r~n~~~Ag---l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~-~~~~~~-l~~~~  203 (249)
T d1o9ga_         129 AARRLRERLTAEG---GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV-AGLLRS-LASAL  203 (249)
T ss_dssp             HHHHHHHHHHHTT---SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH-HHHHHH-HHHHS
T ss_pred             HHHHHHHHHHHcC---CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHH-HHHHHH-HHccC
Confidence            8853   443322   34678899898765332    134678999999984322111    11222 466776 68888


Q ss_pred             CCCcEEEEe
Q 025141          210 NPEGIFVTQ  218 (257)
Q Consensus       210 ~pgGil~~~  218 (257)
                      ....++++-
T Consensus       204 p~~s~~~it  212 (249)
T d1o9ga_         204 PAHAVIAVT  212 (249)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCcEEEEe
Confidence            776666663

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=90.45  E-value=0.098  Score=42.10  Aligned_cols=48  Identities=25%  Similarity=0.362  Sum_probs=32.8

Q ss_pred             HHHHHHH--HHhhcCCCCCeEEEEeccchHHH--HHHHhcCCCcEEEEEECCHH
Q 025141           88 YHESLVH--PALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEE  137 (257)
Q Consensus        88 y~e~l~~--~~l~~~~~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~  137 (257)
                      |.+++..  ..+....+|++|++||+|.++++  .+|.+. + .+|+++|-++.
T Consensus        13 ~~~~~~~~~~~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~-G-~~V~vlE~~~~   64 (370)
T d2iida1          13 YEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGA-G-HQVTVLEASER   64 (370)
T ss_dssp             HHHHHHHHHHCSCCCSSCCEEEEECCBHHHHHHHHHHHHH-T-CEEEEECSSSS
T ss_pred             HHHHHHHHhcCCCCCCCCCeEEEECCCHHHHHHHHHHHHC-C-CCEEEEeCCCC
Confidence            6666542  23334456899999999998874  445554 4 48999998654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=90.24  E-value=0.38  Score=36.34  Aligned_cols=119  Identities=10%  Similarity=0.045  Sum_probs=64.7

Q ss_pred             CCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      -..|+|+++|.|.=+  .+..+... + .+|+++|+||  +...+....         -.++  ....+-+    +.-|+
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~-G-a~V~V~E~DP--i~alqA~md---------Gf~v--~~~~~a~----~~aDi   81 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGL-G-ARVYITEIDP--ICAIQAVME---------GFNV--VTLDEIV----DKGDF   81 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHH-T-CEEEEECSCH--HHHHHHHTT---------TCEE--CCHHHHT----TTCSE
T ss_pred             ecCCEEEEecccccchhHHHHHHhC-C-CEEEEEecCc--hhhHHHHhc---------CCcc--CchhHcc----ccCcE
Confidence            467999999998765  34444443 3 6999999999  444444432         1122  2222332    56799


Q ss_pred             EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHH-HHHHhhhCCceEEEeec
Q 025141          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI-YNTLRQVFKCGCCALFS  251 (257)
Q Consensus       179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~-~~~l~~~F~~v~~~~~~  251 (257)
                      |+.-.-..       ...+.+-|     +.||+|.++ .|.++-+..-+...+... ....+++=|+|.-|..+
T Consensus        82 ~vTaTGn~-------~vI~~~h~-----~~MKdgaIl-~N~GHfd~EIdv~~L~~~~~~~~~~vrp~V~~y~lp  142 (163)
T d1v8ba1          82 FITCTGNV-------DVIKLEHL-----LKMKNNAVV-GNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLP  142 (163)
T ss_dssp             EEECCSSS-------SSBCHHHH-----TTCCTTCEE-EECSSTTTSBCHHHHHTSTTCEEEEEETTEEEEECT
T ss_pred             EEEcCCCC-------ccccHHHH-----HHhhCCeEE-EeccccchhhhhHHHHhCcCcceeeecCCceEEEeC
Confidence            99865432       23344443     457766655 588764322222222111 01112456777777764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=89.86  E-value=1.6  Score=34.75  Aligned_cols=75  Identities=23%  Similarity=0.388  Sum_probs=51.2

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~--  170 (257)
                      +.|.+|+.|++.|.   +++.+++. + .+|..++.+++-++.+.+.+..      ..++.++..|..+.      ++  
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~~~~~~~~l~~------~~~~~~~~~Dv~~~~~v~~~~~~~   76 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRY-G-AKVVIADIADDHGQKVCNNIGS------PDVISFVHCDVTKDEDVRNLVDTT   76 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHhcC------CCceEEEEccCCCHHHHHHHHHHH
Confidence            57889999987665   34555553 4 5899999999988777665532      24677777776432      21  


Q ss_pred             -cCCCceeEEEEcCC
Q 025141          171 -SRKESYDVIIGDLA  184 (257)
Q Consensus       171 -~~~~~fDvIi~D~~  184 (257)
                       +.-++.|+++.++.
T Consensus        77 ~~~~g~iD~lVnnAG   91 (268)
T d2bgka1          77 IAKHGKLDIMFGNVG   91 (268)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCcceeccccc
Confidence             12367899998875

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=89.69  E-value=1.6  Score=34.63  Aligned_cols=76  Identities=17%  Similarity=0.271  Sum_probs=53.5

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~-  171 (257)
                      +.|.+|+.|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...     ..++..+..|..+.      ++. 
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~-G-a~V~~~~r~~~~l~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~   76 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEE-G-TAIALLDMNREALEKAEASVREK-----GVEARSYVCDVTSEEAVIGTVDSV   76 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTT-----TSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            57889999987764   45666664 4 58999999999988877766432     34678888776432      222 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++.
T Consensus        77 ~~~~g~iDilVnnaG   91 (260)
T d1zema1          77 VRDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCeehhhhc
Confidence              2367999998864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.41  E-value=1.1  Score=35.98  Aligned_cols=79  Identities=15%  Similarity=0.316  Sum_probs=53.7

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~-  171 (257)
                      +.|.+|+-|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...+  ....++..+..|..+.      ++. 
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~-G-a~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~   78 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKE-G-AQVTITGRNEDRLEETKQQILKAG--VPAEKINAVVADVTEASGQDDIINTT   78 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEEeeCCCHHHHHHHHHHH
Confidence            56889999987764   45666664 4 589999999988887776654321  1235788888875332      222 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++.
T Consensus        79 ~~~~G~iDilVnnAG   93 (274)
T d1xhla_          79 LAKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCceEEEeecc
Confidence              2257899999864

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=89.19  E-value=0.12  Score=39.12  Aligned_cols=95  Identities=16%  Similarity=0.269  Sum_probs=58.5

Q ss_pred             CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-Hh-cCCCce
Q 025141          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LE-SRKESY  176 (257)
Q Consensus       101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-l~-~~~~~f  176 (257)
                      ++..+||+-|+  |-|..+.++++..+ .+|+++--+++-.+.+++.-.       +  .-+...|.... ++ ..++.+
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~G-a~Viat~~s~~k~~~~~~lGa-------d--~vi~~~~~~~~~~~~~~~~gv   91 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNREAADYLKQLGA-------S--EVISREDVYDGTLKALSKQQW   91 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSSTHHHHHHHTC-------S--EEEEHHHHCSSCCCSSCCCCE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcC-CceEEEecCHHHHHHHHhhcc-------c--ceEeccchhchhhhcccCCCc
Confidence            34557999885  44557788888766 588888888877777776421       1  11211221111 11 124679


Q ss_pred             eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025141          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |+|+-...     +        +.+.. ..+.|+|+|.+++-.
T Consensus        92 d~vid~vg-----g--------~~~~~-~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2          92 QGAVDPVG-----G--------KQLAS-LLSKIQYGGSVAVSG  120 (167)
T ss_dssp             EEEEESCC-----T--------HHHHH-HHTTEEEEEEEEECC
T ss_pred             eEEEecCc-----H--------HHHHH-HHHHhccCceEEEee
Confidence            99875432     1        23556 578999999998643

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=89.14  E-value=3.6  Score=32.51  Aligned_cols=77  Identities=14%  Similarity=0.274  Sum_probs=51.7

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------H--
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------L--  169 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l--  169 (257)
                      -+.|.||+.|+..|.   ++..+++. + .+|..++.+++-++.+.+.+...     ..++.++..|..+.      +  
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~-G-~~V~i~~r~~~~l~~~~~~~~~~-----~~~~~~~~~D~s~~~~~~~~~~~   76 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGL-G-ARVYTCSRNEKELDECLEIWREK-----GLNVEGSVCDLLSRTERDKLMQT   76 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEeecCCHHHHHHHHHH
Confidence            367899999997663   45555554 4 58999999998887776655432     24667777776332      1  


Q ss_pred             --hcCCCceeEEEEcCC
Q 025141          170 --ESRKESYDVIIGDLA  184 (257)
Q Consensus       170 --~~~~~~fDvIi~D~~  184 (257)
                        +......|+++..+.
T Consensus        77 ~~~~~~g~idilinnag   93 (258)
T d1ae1a_          77 VAHVFDGKLNILVNNAG   93 (258)
T ss_dssp             HHHHTTSCCCEEEECCC
T ss_pred             HHHHhCCCcEEEecccc
Confidence              122357888888765

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.08  E-value=2.9  Score=32.93  Aligned_cols=77  Identities=10%  Similarity=0.205  Sum_probs=52.2

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh-
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~-  170 (257)
                      .+.|-+|+.|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...     ..++..+..|..+.      ++ 
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~-G-a~V~~~~r~~~~l~~~~~~l~~~-----g~~~~~~~~Dvt~~~~v~~~~~~   80 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKS-V-SHVICISRTQKSCDSVVDEIKSF-----GYESSGYAGDVSKKEEISEVINK   80 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTT-S-SEEEEEESSHHHHHHHHHHHHTT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHH
Confidence            467888888987663   34444443 3 58999999999887777665432     24678888877432      22 


Q ss_pred             --cCCCceeEEEEcCC
Q 025141          171 --SRKESYDVIIGDLA  184 (257)
Q Consensus       171 --~~~~~fDvIi~D~~  184 (257)
                        +.-++.|+++.++.
T Consensus        81 ~~~~~g~iDilvnnag   96 (251)
T d2c07a1          81 ILTEHKNVDILVNNAG   96 (251)
T ss_dssp             HHHHCSCCCEEEECCC
T ss_pred             HHHhcCCceeeeeccc
Confidence              23478999998875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.96  E-value=0.96  Score=33.88  Aligned_cols=73  Identities=14%  Similarity=0.240  Sum_probs=46.1

Q ss_pred             CCCCCeEEEEeccchHHH--HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025141          100 HPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      ..+.++||++|+|+-+-+  ..+.+  ...+|+.+.-+++-.+...+.+...      .++.....|     ......+|
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~--~~~~i~I~nR~~~~a~~l~~~~~~~------~~~~~~~~~-----~~~~~~~d   81 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQ--AQQNIVLANRTFSKTKELAERFQPY------GNIQAVSMD-----SIPLQTYD   81 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHH--TTCEEEEEESSHHHHHHHHHHHGGG------SCEEEEEGG-----GCCCSCCS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcc--cCceeeeccchHHHHHHHHHHHhhc------cccchhhhc-----cccccccc
Confidence            456789999999755532  23333  3468999999987766665555422      234444333     22346799


Q ss_pred             EEEEcCCC
Q 025141          178 VIIGDLAD  185 (257)
Q Consensus       178 vIi~D~~~  185 (257)
                      +||...+.
T Consensus        82 iiIN~tp~   89 (171)
T d1p77a1          82 LVINATSA   89 (171)
T ss_dssp             EEEECCCC
T ss_pred             eeeecccc
Confidence            99988764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=88.80  E-value=1.3  Score=32.42  Aligned_cols=110  Identities=25%  Similarity=0.317  Sum_probs=56.7

Q ss_pred             CeEEEEeccc-h-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          104 KTIFIMGGGE-G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       104 ~~VL~IG~G~-G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      |+|-+||+|. | .++..++...-..++..+|++++..+.-..-+.... .....+..+..+|-.+ +    ..-|+|++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~-~~~~~~~~~~~~d~~~-l----~~adiVVi   75 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM-ANLEAHGNIVINDWAA-L----ADADVVIS   75 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG-GGSSSCCEEEESCGGG-G----TTCSEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc-cccCCccceeccCHHH-h----ccccEEEE
Confidence            7899999864 2 334444444434689999999987543222121100 0122345666676332 2    44699988


Q ss_pred             cCCCCC--CCCc--c-cCCc--hHHHHHHH---HcCcCCCCcEEEEecC
Q 025141          182 DLADPI--EGGP--C-YKLY--TKSFYEFV---VKPRLNPEGIFVTQAG  220 (257)
Q Consensus       182 D~~~~~--~~~p--~-~~L~--t~ef~~~~---~~~~L~pgGil~~~~~  220 (257)
                      -+..+.  ...|  . ..|+  +...++++   ++ ...|++++++-++
T Consensus        76 taG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~-~~~p~aivivvtN  123 (146)
T d1hyha1          76 TLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLK-ESGFHGVLVVISN  123 (146)
T ss_dssp             CCSCGGGTC-------CTTHHHHHHHHHHHHHHHH-HTTCCSEEEECSS
T ss_pred             eccccccccccCCccHHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEecC
Confidence            754211  0011  0 1222  23334441   23 4679999876543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.47  E-value=2.5  Score=34.28  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=52.2

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~~-  171 (257)
                      +.|.+|+.|++.|.   +++.+++. + .+|.+++.+++-++.+.+-+..........++..+..|..+      +++. 
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~-G-a~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLEL-G-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            67899999987665   34555553 4 58999999988776665544321111124578888877643      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++.
T Consensus        89 ~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          89 LDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCeEEEEeecc
Confidence              2367999999875

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=88.29  E-value=0.3  Score=37.10  Aligned_cols=81  Identities=17%  Similarity=0.243  Sum_probs=44.3

Q ss_pred             CCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCCCCCeEEE-EcchHHHHhcCCCc
Q 025141          100 HPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELV-INDARAELESRKES  175 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~~~rv~i~-~~Da~~~l~~~~~~  175 (257)
                      ..+.++||+||+|+-+-  +..+.+ .+..+++.+..+++-.+.+...+. +.. .+ ...+.+. ..|-..+. .....
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~-~g~~~i~i~nR~~~~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~-~~~~~   90 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAI-EGLKEIKLFNRRDEFFDKALAFAQRVNE-NT-DCVVTVTDLADQQAFA-EALAS   90 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEECSSTTHHHHHHHHHHHHH-HS-SCEEEEEETTCHHHHH-HHHHT
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhh-cCCceEeeeccchHHHHHHHHHHHHHHh-hc-CcceEeeecccccchh-hhhcc
Confidence            35678999999974432  233444 456899999998776665544322 110 00 1112222 22322222 22256


Q ss_pred             eeEEEEcCC
Q 025141          176 YDVIIGDLA  184 (257)
Q Consensus       176 fDvIi~D~~  184 (257)
                      +|+||...+
T Consensus        91 ~diiIN~Tp   99 (182)
T d1vi2a1          91 ADILTNGTK   99 (182)
T ss_dssp             CSEEEECSS
T ss_pred             cceeccccC
Confidence            899998765

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=87.33  E-value=0.91  Score=32.90  Aligned_cols=76  Identities=20%  Similarity=0.231  Sum_probs=41.0

Q ss_pred             eEEEEeccc-h-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhcCCCceeEEEE
Q 025141          105 TIFIMGGGE-G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIG  181 (257)
Q Consensus       105 ~VL~IG~G~-G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~~~~~fDvIi~  181 (257)
                      +|.+||.|. | .++..++...-..++..+|+++...+........... ....+.++.. +| .+-+    ...|+|++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~-~~~~~~~i~~~~~-~~~~----~dadvvvi   75 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP-VGLFDTKVTGSND-YADT----ANSDIVII   75 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH-HHTCCCEEEEESC-GGGG----TTCSEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc-hhcccceEEecCC-HHHh----cCCeEEEE
Confidence            688999763 2 2344444444346899999999876543322211000 0122444443 44 3322    45799988


Q ss_pred             cCCCC
Q 025141          182 DLADP  186 (257)
Q Consensus       182 D~~~~  186 (257)
                      .+-.|
T Consensus        76 tag~~   80 (142)
T d1guza1          76 TAGLP   80 (142)
T ss_dssp             CCSCC
T ss_pred             EEecC
Confidence            87543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=87.21  E-value=4  Score=29.52  Aligned_cols=110  Identities=17%  Similarity=0.251  Sum_probs=56.8

Q ss_pred             CCCCeEEEEeccc-hHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGE-GSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ++.++|.+||+|. |... ..++...-..++..+|++++..+--..  .+...........+..+|-.+ +    ..-|+
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~--Dl~~a~~~~~~~~~~~~d~~~-~----~~adi   75 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDAL--DLEDAQAFTAPKKIYSGEYSD-C----KDADL   75 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHH--HHHGGGGGSCCCEEEECCGGG-G----TTCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHH--HHhccccccCCceEeeccHHH-h----ccccE
Confidence            4567999999865 4433 334443434689999999976542111  111100112345666777322 1    45699


Q ss_pred             EEEcCCCCCCCCcc-cCCch------HHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPC-YKLYT------KSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~-~~L~t------~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |++-+..+...+.. ..+..      ++..+. ++ .-.|++++++-+
T Consensus        76 vvitag~~~~~g~~r~~l~~~N~~i~~~~~~~-i~-~~~p~aivivvt  121 (146)
T d1ez4a1          76 VVITAGAPQKPGESRLDLVNKNLNILSSIVKP-VV-DSGFDGIFLVAA  121 (146)
T ss_dssp             EEECCCC----------CHHHHHHHHHHHHHH-HH-HTTCCSEEEECS
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHHHHHH-Hh-hcCCCcEEEEeC
Confidence            99976543321111 12221      244444 23 457899887644

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.11  E-value=3.9  Score=30.25  Aligned_cols=72  Identities=19%  Similarity=0.315  Sum_probs=39.2

Q ss_pred             CeEEEEeccchHH---HHHHHhcCC---CcEEEEEECCHHHHHH--HH----hhhhhccCCCCCCCeEE-EEcchHHHHh
Q 025141          104 KTIFIMGGGEGST---AREILRHKT---VEKVVMCDIDEEVVEF--CK----SYLVVNKEAFSDPRLEL-VINDARAELE  170 (257)
Q Consensus       104 ~~VL~IG~G~G~~---~~~l~~~~~---~~~v~~VEid~~vi~~--a~----~~~~~~~~~~~~~rv~i-~~~Da~~~l~  170 (257)
                      .+|-+||+|+.++   ...+++..+   ..++..+|+|++..+.  ..    +.+...     ...+++ ...|-.+-++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~-----~~~~~~~~~td~~~al~   76 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKA-----GVPIEIHLTLDRRRALD   76 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-----TCCCEEEEESCHHHHHT
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhc-----CCCceeeecCCchhhcC
Confidence            3789999986443   233333221   3589999998865322  22    222211     122232 3455555443


Q ss_pred             cCCCceeEEEEcCC
Q 025141          171 SRKESYDVIIGDLA  184 (257)
Q Consensus       171 ~~~~~fDvIi~D~~  184 (257)
                          ..|+|++.+.
T Consensus        77 ----gaDvVv~ta~   86 (169)
T d1s6ya1          77 ----GADFVTTQFR   86 (169)
T ss_dssp             ----TCSEEEECCC
T ss_pred             ----CCCEEEEccc
Confidence                4699998875

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.01  E-value=4.1  Score=31.96  Aligned_cols=77  Identities=17%  Similarity=0.277  Sum_probs=53.1

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---------H
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---------L  169 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---------l  169 (257)
                      .+|.||+-|++.|.   +++++++. + .+|..++.+++-++...+.+...     .+++..+..|..+.         +
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~-G-~~V~l~~r~~~~l~~~~~~~~~~-----~~~~~~~~~Dvs~~~~v~~~~~~i   78 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKL-K-SKLVLWDINKHGLEETAAKCKGL-----GAKVHTFVVDCSNREDIYSSAKKV   78 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEeeCCCHHHHHHHHHHH
Confidence            46778888887665   45566654 4 58999999999887766665432     35788888876443         1


Q ss_pred             hcCCCceeEEEEcCCC
Q 025141          170 ESRKESYDVIIGDLAD  185 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~~  185 (257)
                      .+..+.-|+++.++..
T Consensus        79 ~~~~g~idilinnag~   94 (244)
T d1yb1a_          79 KAEIGDVSILVNNAGV   94 (244)
T ss_dssp             HHHTCCCSEEEECCCC
T ss_pred             HHHcCCCceeEeeccc
Confidence            1234679999988864

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.70  E-value=4.3  Score=29.34  Aligned_cols=111  Identities=14%  Similarity=0.201  Sum_probs=59.8

Q ss_pred             CCCCeEEEEeccc-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025141          101 PNPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv  178 (257)
                      ..+++|-+||+|. |. ++..++...-..++..+|++++..+.-..-+.. ...+....+.+..+|-.+ +    ..-|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~-~~~~~~~~~~~~~~d~~~-l----~daDv   77 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH-GKVFAPKPVDIWHGDYDD-C----RDADL   77 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH-HTTSSSSCCEEEECCGGG-T----TTCSE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhh-CccccCCCeEEEECCHHH-h----cccee
Confidence            4567999999864 33 344444444456899999999875432221211 111233456666666322 2    34699


Q ss_pred             EEEcCCCCCCCCcc-cCCch------HHHHHHHHcCcCCCCcEEEEec
Q 025141          179 IIGDLADPIEGGPC-YKLYT------KSFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       179 Ii~D~~~~~~~~p~-~~L~t------~ef~~~~~~~~L~pgGil~~~~  219 (257)
                      |++-+..+...+.. ..++.      +++.+. ++ .-.|++++++-+
T Consensus        78 vvitag~~~~~~~~R~dl~~~N~~i~~~i~~~-i~-~~~p~a~~ivvt  123 (148)
T d1ldna1          78 VVICAGANQKPGETRLDLVDKNIAIFRSIVES-VM-ASGFQGLFLVAT  123 (148)
T ss_dssp             EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHH-HH-HHTCCSEEEECS
T ss_pred             EEEecccccccCcchhHHHHHHHHHHHHHHHH-HH-hhCCCceEEEec
Confidence            99876543321111 12221      233444 23 346899877643

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=86.63  E-value=0.33  Score=35.47  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=26.3

Q ss_pred             CCeEEEEeccchHH--HHHHHhcCCCcEEEEEECCH
Q 025141          103 PKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       103 ~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~  136 (257)
                      .|||++||+|..++  +.++.+..+..+||.+|-++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            58999999998885  45665655456899999776

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=86.32  E-value=3.7  Score=32.46  Aligned_cols=78  Identities=21%  Similarity=0.333  Sum_probs=52.6

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~~-  171 (257)
                      +.|.+|+-|++.|.   +++.+++. + .+|..++.+++-++.+.+.+....   ...++..+..|..+      ++.. 
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~l~~~~~~~~~~~---~~~~~~~~~~Dvt~~~~v~~~~~~~   77 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAE-G-AKLSLVDVSSEGLEASKAAVLETA---PDAEVLTTVADVSDEAQVEAYVTAT   77 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHHC---TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhhC---CCCeEEEEeccCCCHHHHHHHHHHH
Confidence            56889999987765   45666664 4 689999999998887766553221   23467777777533      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++-
T Consensus        78 ~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          78 TERFGRIDGFFNNAG   92 (258)
T ss_dssp             HHHHSCCSEEEECCC
T ss_pred             HHHhCCCCEEEECCc
Confidence              2367999999874

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.15  E-value=2.2  Score=31.81  Aligned_cols=97  Identities=14%  Similarity=0.168  Sum_probs=55.1

Q ss_pred             eEEEEeccchHHH--HHHHhcCCCcEEEEE--ECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhcCCCceeEE
Q 025141          105 TIFIMGGGEGSTA--REILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDVI  179 (257)
Q Consensus       105 ~VL~IG~G~G~~~--~~l~~~~~~~~v~~V--Eid~~vi~~a~~~~~~~~~~~~~~rv~i~-~~Da~~~l~~~~~~fDvI  179 (257)
                      +|.+||+|.-+.+  ..+++. + .+|+.+  +.|++.++..++....+.-........+. ..|..+.+    +..|+|
T Consensus         2 kI~ViGaG~~GtalA~~la~~-g-~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~ad~I   75 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDN-G-NEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL----ENAEVV   75 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-C-CEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH----TTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHC-C-CEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHH----hccchh
Confidence            6899999987654  344433 2 377777  45777777665432211000011222333 34433334    457999


Q ss_pred             EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025141          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (257)
Q Consensus       180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~  217 (257)
                      ++-.+.         ...++.+++ ++..|+++-+++.
T Consensus        76 i~avps---------~~~~~~~~~-l~~~l~~~~ii~~  103 (180)
T d1txga2          76 LLGVST---------DGVLPVMSR-ILPYLKDQYIVLI  103 (180)
T ss_dssp             EECSCG---------GGHHHHHHH-HTTTCCSCEEEEC
T ss_pred             hcccch---------hhhHHHHHh-hccccccceeccc
Confidence            987542         234688888 7889987655543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.77  E-value=5.6  Score=29.94  Aligned_cols=109  Identities=14%  Similarity=0.100  Sum_probs=56.3

Q ss_pred             eEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccCC--------CCCCCeEEEEcchHHHHhcCC
Q 025141          105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEA--------FSDPRLELVINDARAELESRK  173 (257)
Q Consensus       105 ~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~--------~~~~rv~i~~~Da~~~l~~~~  173 (257)
                      +|.+||+|-=++  +..+++. + -+|+++|+|++.++..++.- +.....        ....+ -....|..+.++   
T Consensus         2 kI~ViGlG~vGl~~a~~la~~-g-~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~---   75 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSAR-G-HEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGR-LSGTTDFKKAVL---   75 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTC-EEEESCHHHHHH---
T ss_pred             EEEEECCCHhHHHHHHHHHhC-C-CcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccc-cccCCCHHHHHh---
Confidence            688999986553  3444443 3 48999999999998876531 111000        00111 123334334332   


Q ss_pred             CceeEEEEcCCCCCCCCcccCC-chHHHHHHH--HcCcCCCCcEEEEecC
Q 025141          174 ESYDVIIGDLADPIEGGPCYKL-YTKSFYEFV--VKPRLNPEGIFVTQAG  220 (257)
Q Consensus       174 ~~fDvIi~D~~~~~~~~p~~~L-~t~ef~~~~--~~~~L~pgGil~~~~~  220 (257)
                       ..|+|++..+-|........+ +.....+.+  +.+.++++.++++...
T Consensus        76 -~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~ST  124 (202)
T d1mv8a2          76 -DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST  124 (202)
T ss_dssp             -TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC
T ss_pred             -hCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccc
Confidence             468988887654321110011 111222220  2456678888887653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.73  E-value=1.2  Score=35.53  Aligned_cols=76  Identities=17%  Similarity=0.173  Sum_probs=49.8

Q ss_pred             CCeEE-EEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---------H
Q 025141          103 PKTIF-IMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---------L  169 (257)
Q Consensus       103 ~~~VL-~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---------l  169 (257)
                      .++|- +-|++.|.   +++.+++.. ..+|..+..+++-.+.+.+.+...     .+++.++..|..+.         +
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~-g~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dvs~~~sv~~~~~~~   75 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQQLQAE-----GLSPRFHQLDIDDLQSIRALRDFL   75 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHHHHHHT-----TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEEecCCHHHHHHHHHHH
Confidence            57884 45555443   344455432 368999999999888877766532     35678888886332         2


Q ss_pred             hcCCCceeEEEEcCC
Q 025141          170 ESRKESYDVIIGDLA  184 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~  184 (257)
                      .+..++.|++|.++-
T Consensus        76 ~~~~g~iDiLVnNAG   90 (275)
T d1wmaa1          76 RKEYGGLDVLVNNAG   90 (275)
T ss_dssp             HHHHSSEEEEEECCC
T ss_pred             HHhcCCcEEEEEcCC
Confidence            223368999999975

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.69  E-value=3.4  Score=33.00  Aligned_cols=78  Identities=18%  Similarity=0.289  Sum_probs=50.9

Q ss_pred             CCCeEEEEeccch---HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---------H
Q 025141          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---------L  169 (257)
Q Consensus       102 ~~~~VL~IG~G~G---~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---------l  169 (257)
                      +.|.+|+.|+++|   .+++.+++. + .+|+.++.++.-++.+.+.+...    ...++..+..|..+.         +
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~-G-a~Vii~~r~~~~l~~~~~~l~~~----~g~~~~~~~~D~~~~~~v~~~~~~~   97 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSL-G-AQCVIASRKMDVLKATAEQISSQ----TGNKVHAIQCDVRDPDMVQNTVSEL   97 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHH----HSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHh----cCCceEEEEecccChHHHHHHhhhh
Confidence            4688999998776   355666664 4 69999999998776655443211    124566777665332         2


Q ss_pred             hcCCCceeEEEEcCCC
Q 025141          170 ESRKESYDVIIGDLAD  185 (257)
Q Consensus       170 ~~~~~~fDvIi~D~~~  185 (257)
                      .....+.|+++..+..
T Consensus        98 ~~~~g~iDilvnnAg~  113 (294)
T d1w6ua_          98 IKVAGHPNIVINNAAG  113 (294)
T ss_dssp             HHHTCSCSEEEECCCC
T ss_pred             hhhccccchhhhhhhh
Confidence            2235789999988753

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.59  E-value=1.1  Score=31.41  Aligned_cols=46  Identities=28%  Similarity=0.420  Sum_probs=31.4

Q ss_pred             CCCCeEEEEeccc-hH-HHHHHHhcCCCcEEEEEECCH--------HHHHHHHhhhhh
Q 025141          101 PNPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE--------EVVEFCKSYLVV  148 (257)
Q Consensus       101 ~~~~~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~--------~vi~~a~~~~~~  148 (257)
                      ..|+++++||+|- |. ++..+.+ .+ .+||.+|..+        ++.+.+++++..
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~-lG-~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~   76 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSR-LG-SKVTVVEFQPQIGASMDGEVAKATQKFLKK   76 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH-TT-CEEEEECSSSSSSSSSCHHHHHHHHHHHHH
T ss_pred             cCCCeEEEECCCchHHHHHHHHHh-hC-cceeEEEeccccchhhhhhhHHHHHHHHHh
Confidence            4578999999983 33 2333333 44 6999998755        777777777653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=85.57  E-value=3  Score=32.83  Aligned_cols=75  Identities=16%  Similarity=0.259  Sum_probs=51.8

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~--  170 (257)
                      +.|.+|+.|++.|.   +++.+++. + .+|..++.+++-.+.+.+.+..      ..++..+..|..+.      ++  
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~-G-a~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~   76 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEE-G-AKVMITGRHSDVGEKAAKSVGT------PDQIQFFQHDSSDEDGWTKLFDAT   76 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHhCC------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            56788888877664   34555553 4 5899999999988877765532      34788888887432      22  


Q ss_pred             -cCCCceeEEEEcCC
Q 025141          171 -SRKESYDVIIGDLA  184 (257)
Q Consensus       171 -~~~~~fDvIi~D~~  184 (257)
                       +.-++.|+++.++.
T Consensus        77 ~~~~G~iDiLVnnAg   91 (251)
T d1zk4a1          77 EKAFGPVSTLVNNAG   91 (251)
T ss_dssp             HHHHSSCCEEEECCC
T ss_pred             HHHhCCceEEEeccc
Confidence             12367999998875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=85.51  E-value=1.9  Score=31.95  Aligned_cols=72  Identities=17%  Similarity=0.206  Sum_probs=42.7

Q ss_pred             CCCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025141          100 HPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (257)
Q Consensus       100 ~~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fD  177 (257)
                      ..+.++||+||+|+-+  ++..+.+ .+. +|+.+.-+++-.+...+.|...      ..++...-|     ......+|
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~-~g~-~i~I~nRt~~ka~~l~~~~~~~------~~~~~~~~~-----~~~~~~~d   81 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLS-LDC-AVTITNRTVSRAEELAKLFAHT------GSIQALSMD-----ELEGHEFD   81 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH-TTC-EEEEECSSHHHHHHHHHHTGGG------SSEEECCSG-----GGTTCCCS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcc-cce-EEEeccchHHHHHHHHHHHhhc------ccccccccc-----cccccccc
Confidence            4567899999997554  2334444 343 7999998877666555544322      123322222     12235789


Q ss_pred             EEEEcCC
Q 025141          178 VIIGDLA  184 (257)
Q Consensus       178 vIi~D~~  184 (257)
                      +||.-.+
T Consensus        82 liIN~Tp   88 (170)
T d1nyta1          82 LIINATS   88 (170)
T ss_dssp             EEEECCS
T ss_pred             eeecccc
Confidence            9987765

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=85.48  E-value=6.6  Score=30.82  Aligned_cols=77  Identities=13%  Similarity=0.263  Sum_probs=52.9

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES  171 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~~  171 (257)
                      -+.|.+|+.|++.|.   +++.+++. + .+|.+++.+++-++.+.+.+...     ..++..+..|..+      .++.
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~-G-a~V~~~~r~~~~l~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~   78 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASL-G-ASVYTCSRNQKELNDCLTQWRSK-----GFKVEASVCDLSSRSERQELMNT   78 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEeeCCCHHHHHHHHHH
Confidence            367899999988664   45566664 4 58999999998887776655432     3567777777632      2221


Q ss_pred             ----CCCceeEEEEcCC
Q 025141          172 ----RKESYDVIIGDLA  184 (257)
Q Consensus       172 ----~~~~fDvIi~D~~  184 (257)
                          ...+.|+++.++-
T Consensus        79 ~~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          79 VANHFHGKLNILVNNAG   95 (259)
T ss_dssp             HHHHTTTCCCEEEECCC
T ss_pred             HHHHhCCCceEEEECCc
Confidence                2347999999875

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.17  E-value=5.1  Score=28.77  Aligned_cols=110  Identities=19%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             eEEEEeccc-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhcCCCceeEEEE
Q 025141          105 TIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIG  181 (257)
Q Consensus       105 ~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~~~~~fDvIi~  181 (257)
                      +|-+||+|. |. ++..++...-..++..+|++++..+.-..-+..... +.+.+.++.. +|- +-+    ..-|+|++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~-~~~~~~~i~~~~d~-~~~----~~adiVvi   75 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA-GIDKYPKIVGGADY-SLL----KGSEIIVV   75 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH-TTTCCCEEEEESCG-GGG----TTCSEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhcc-ccCCCCccccCCCH-HHh----ccccEEEE
Confidence            688999753 22 233333334456899999999886532111110000 0112334443 452 222    45799998


Q ss_pred             cCCCCCCCCcc-cCCc--hHHHHHHHHc--CcCCCCcEEEEecC
Q 025141          182 DLADPIEGGPC-YKLY--TKSFYEFVVK--PRLNPEGIFVTQAG  220 (257)
Q Consensus       182 D~~~~~~~~p~-~~L~--t~ef~~~~~~--~~L~pgGil~~~~~  220 (257)
                      .+..+...++. ..++  +...++.++.  ....|++++++-++
T Consensus        76 tag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             eccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            87644322221 1121  1222333111  23478998876543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=85.01  E-value=2.1  Score=30.86  Aligned_cols=97  Identities=9%  Similarity=0.022  Sum_probs=56.5

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHH-HHHhhhhhccCCCCCCCeEEEEcchHHH--Hhc-CCCcee
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAE--LES-RKESYD  177 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~-~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~-~~~~fD  177 (257)
                      .+++++|+|.-+  ++..+.+. + .++++||.||+-.. ..++..        ...+.++.+|+.+.  ++. .-++.|
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~-~-~~v~vId~d~~~~~~~~~~~~--------~~~~~vi~Gd~~d~~~L~~a~i~~a~   73 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQR-G-QNVTVISNLPEDDIKQLEQRL--------GDNADVIPGDSNDSSVLKKAGIDRCR   73 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHH--------CTTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-C-CCEEEEeccchhHHHHHHHhh--------cCCcEEEEccCcchHHHHHhccccCC
Confidence            469999997443  34444443 3 57999999987543 333221        24678899988553  433 336789


Q ss_pred             EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      .|+....+..     .   +.....  ..+.+.|+-.+++...
T Consensus        74 ~vi~~~~~d~-----~---n~~~~~--~~r~~~~~~~iia~~~  106 (153)
T d1id1a_          74 AILALSDNDA-----D---NAFVVL--SAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             EEEECSSCHH-----H---HHHHHH--HHHHHTSSSCEEEECS
T ss_pred             EEEEccccHH-----H---HHHHHH--HHHHhCCCCceEEEEc
Confidence            9888754311     1   111222  2345677766666543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.97  E-value=2  Score=31.97  Aligned_cols=70  Identities=14%  Similarity=0.045  Sum_probs=42.5

Q ss_pred             eEEEEeccchH--HHHHHHhcCCCcEEEE-EECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          105 TIFIMGGGEGS--TAREILRHKTVEKVVM-CDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       105 ~VL~IG~G~G~--~~~~l~~~~~~~~v~~-VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      ||.+||||.-+  ....+...+ ..++++ +|.+++-.+...+.+..+      +. .-+..|..+.+..  ...|+|++
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~~~~~~~~~~~------~~-~~~~~~~~~ll~~--~~iD~v~I   72 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAKAFATANNYP------ES-TKIHGSYESLLED--PEIDALYV   72 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHHTTCC------TT-CEEESSHHHHHHC--TTCCEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCccccccchhccccc------cc-eeecCcHHHhhhc--cccceeee
Confidence            78999998533  233344444 356774 599988765544433322      12 2245777777764  46899988


Q ss_pred             cCC
Q 025141          182 DLA  184 (257)
Q Consensus       182 D~~  184 (257)
                      ..+
T Consensus        73 ~tp   75 (184)
T d1ydwa1          73 PLP   75 (184)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=84.68  E-value=0.39  Score=37.34  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=22.7

Q ss_pred             CCeEEEEeccchHHH--HHHHhcCCCcEEEEEECCH
Q 025141          103 PKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDE  136 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~  136 (257)
                      .|||++||+|-++++  .+|.+ .+ .+|+++|-++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~-~G-~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKI-HG-LNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TS-CEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHh-CC-CCEEEEeCCC
Confidence            479999999977653  34434 34 4899999653

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=84.67  E-value=4  Score=28.16  Aligned_cols=74  Identities=18%  Similarity=0.244  Sum_probs=50.2

Q ss_pred             cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHc
Q 025141          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK  206 (257)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~  206 (257)
                      .+|..||=|+.+.+..++.+...      ..+ ....++.+.+.. .++||+|++|..-|.       .-..++.+. ++
T Consensus         3 ~kILiVDDd~~~~~~l~~~L~~~------g~v-~~~~~~~~al~~-~~~~dlillD~~mP~-------~~G~~~~~~-lr   66 (120)
T d1p2fa2           3 WKIAVVDDDKNILKKVSEKLQQL------GRV-KTFLTGEDFLND-EEAFHVVVLDVMLPD-------YSGYEICRM-IK   66 (120)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTT------EEE-EEESSHHHHHHC-CSCCSEEEEESBCSS-------SBHHHHHHH-HH
T ss_pred             CEEEEEECCHHHHHHHHHHHHhC------CEE-EEECCHHHHHhc-CCCCCEEEEeCcccc-------cchhHHHHH-Hh
Confidence            37899999999999999887632      133 356788898864 467999999986543       223566776 55


Q ss_pred             CcCCCCc-EEEE
Q 025141          207 PRLNPEG-IFVT  217 (257)
Q Consensus       207 ~~L~pgG-il~~  217 (257)
                      +. .|.- ++++
T Consensus        67 ~~-~~~~~ii~i   77 (120)
T d1p2fa2          67 ET-RPETWVILL   77 (120)
T ss_dssp             HH-CTTSEEEEE
T ss_pred             hc-CCCCcEEEE
Confidence            33 3443 4443

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.64  E-value=2  Score=29.91  Aligned_cols=71  Identities=20%  Similarity=0.365  Sum_probs=48.1

Q ss_pred             EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCchHHHHHHH
Q 025141          128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFV  204 (257)
Q Consensus       128 ~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~--~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~  204 (257)
                      +|..||=|+.+.+..++++...      +....+  ..|+.+.+... ..+||+|++|..-|.       .-..++.+. 
T Consensus         3 rILivDD~~~~~~~l~~~L~~~------~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP~-------~dG~e~~~~-   68 (123)
T d1dz3a_           3 KVCIADDNRELVSLLDEYISSQ------PDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPH-------LDGLAVLER-   68 (123)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS------TTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSS-------SCHHHHHHH-
T ss_pred             EEEEEeCCHHHHHHHHHHHHhC------CCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCC-------CCHHHHHHH-
Confidence            7889999999999999988632      234433  45766665432 257999999986543       234577887 


Q ss_pred             HcCcCCCC
Q 025141          205 VKPRLNPE  212 (257)
Q Consensus       205 ~~~~L~pg  212 (257)
                      +++.....
T Consensus        69 ir~~~~~~   76 (123)
T d1dz3a_          69 IRAGFEHQ   76 (123)
T ss_dssp             HHHHCSSC
T ss_pred             HHhcCCCC
Confidence            66555433

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=84.45  E-value=0.32  Score=38.04  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=25.2

Q ss_pred             CCCCeEEEEeccchHHHHHH-HhcCCCcEEEEEECCH
Q 025141          101 PNPKTIFIMGGGEGSTAREI-LRHKTVEKVVMCDIDE  136 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~~~l-~~~~~~~~v~~VEid~  136 (257)
                      |.++||++||+|-.+++..+ ++..+ -+|+++|-++
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G-~~v~v~Er~~   37 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAG-VDVDVYERSP   37 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCC-CCEEEEeCCC
Confidence            67789999999988864332 33345 4899999654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.38  E-value=4.2  Score=31.94  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=50.8

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~~-  171 (257)
                      +.|.+|+.|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...    ...++..+..|..+      .++. 
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~~~~~~~~l~~~----~g~~~~~~~~Dv~~~~~v~~~~~~~   77 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEA-G-CSVVVASRNLEEASEAAQKLTEK----YGVETMAFRCDVSNYEEVKKLLEAV   77 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHH----HCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHH----hCCcEEEEEccCCCHHHHHHHHHHH
Confidence            57889999987664   45566664 4 58999999988776655443211    12467777777633      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++.
T Consensus        78 ~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          78 KEKFGKLDTVVNAAG   92 (251)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              2367999999875

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=84.22  E-value=2.8  Score=29.02  Aligned_cols=77  Identities=14%  Similarity=0.109  Sum_probs=51.6

Q ss_pred             cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CCceeEEEEcCCCCCCCCcccCCchHHHHHHH
Q 025141          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFV  204 (257)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~  204 (257)
                      .+|.+||=|+.+.+..++++...+     =++. ...++.+.++..  ..+||+|++|..-|.       .-..++.+. 
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~~g-----~~v~-~~~~~~~al~~l~~~~~~dliilD~~lp~-------~~G~el~~~-   68 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQLG-----AEVT-VHPSGSAFFQHRSQLSTCDLLIVSDQLVD-------LSIFSLLDI-   68 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTT-----CEEE-EESSHHHHHHTGGGGGSCSEEEEETTCTT-------SCHHHHHHH-
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcC-----CCeE-EECCHHHHHHHHHhcCCCCEEEEeCCCCC-------CCHHHHHHH-
Confidence            489999999999999999886432     1233 445667766532  246999999986543       224577887 


Q ss_pred             HcCcCCCCcEEEE
Q 025141          205 VKPRLNPEGIFVT  217 (257)
Q Consensus       205 ~~~~L~pgGil~~  217 (257)
                      +++.-+.-.++++
T Consensus        69 ir~~~~~~pii~l   81 (118)
T d2b4aa1          69 VKEQTKQPSVLIL   81 (118)
T ss_dssp             HTTSSSCCEEEEE
T ss_pred             HHhcCCCCcEEEE
Confidence            6765433345554

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.03  E-value=4.2  Score=32.08  Aligned_cols=73  Identities=22%  Similarity=0.234  Sum_probs=49.5

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~~-  171 (257)
                      +.|.+|+.|++.|.   +++.+++. + .+|..++.+++-++...+.+.        .++..+..|..+      .++. 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~-G-a~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~   73 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAA-G-ARVVLADVLDEEGAATARELG--------DAARYQHLDVTIEEDWQRVVAYA   73 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHTTG--------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHhC--------CceEEEEcccCCHHHHHHHHHHH
Confidence            57899999998774   56666664 4 589999999887765554332        356777777643      2221 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++.
T Consensus        74 ~~~~g~iDilVnnAg   88 (254)
T d1hdca_          74 REEFGSVDGLVNNAG   88 (254)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCccEEEecCc
Confidence              2367999998875

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.70  E-value=1.4  Score=35.24  Aligned_cols=79  Identities=20%  Similarity=0.307  Sum_probs=53.6

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~~-  171 (257)
                      +.|.+|+.|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...+  ....++..+..|..+      .++. 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~-G-a~V~l~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~~Dvs~~~~v~~~~~~~   79 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQE-G-ANVTITGRSSERLEETRQIILKSG--VSEKQVNSVVADVTTEDGQDQIINST   79 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTTT--CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC--CCCCceEEEEccCCCHHHHHHHHHHH
Confidence            56889999987664   45566664 4 589999999998887776654221  134578888887643      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++.
T Consensus        80 ~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          80 LKQFGKIDVLVNNAG   94 (272)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCceEEEeCCc
Confidence              2367899999864

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.49  E-value=5.3  Score=31.34  Aligned_cols=72  Identities=24%  Similarity=0.427  Sum_probs=49.4

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~~-  171 (257)
                      +.|.+|+-|++.|.   +++.+++. + .+|..++.+++.++...+..         ++...+..|..+      .++. 
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~~~~~~~~~---------~~~~~~~~Dvs~~~~v~~~~~~~   73 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNS-G-ARVVICDKDESGGRALEQEL---------PGAVFILCDVTQEDDVKTLVSET   73 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHC---------TTEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHhc---------CCCeEEEccCCCHHHHHHHHHHH
Confidence            57899999987764   45555553 4 58999999998887766532         345667777533      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++.
T Consensus        74 ~~~~g~iDilVnnAG   88 (250)
T d1ydea1          74 IRRFGRLDCVVNNAG   88 (250)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHhcCCCCEEEeccc
Confidence              2267899999875

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.41  E-value=2.1  Score=33.81  Aligned_cols=79  Identities=20%  Similarity=0.311  Sum_probs=52.0

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~-  171 (257)
                      +.|.+|+.|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...   ....++..+..|..+.      ++. 
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~   76 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLK-G-AKVALVDWNLEAGVQCKAALHEQ---FEPQKTLFIQCDVADQQQLRDTFRKV   76 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHTTT---SCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHh---cCCCcEEEEEeecCCHHHHHHHHHHH
Confidence            46889999987665   34455553 4 68999999998877766554311   1235778888886442      221 


Q ss_pred             --CCCceeEEEEcCCC
Q 025141          172 --RKESYDVIIGDLAD  185 (257)
Q Consensus       172 --~~~~fDvIi~D~~~  185 (257)
                        .-++.|+++.++..
T Consensus        77 ~~~~G~iDilVnnAg~   92 (254)
T d2gdza1          77 VDHFGRLDILVNNAGV   92 (254)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCcCeecccccc
Confidence              23679999998753

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.37  E-value=5.6  Score=27.88  Aligned_cols=55  Identities=18%  Similarity=0.112  Sum_probs=42.4

Q ss_pred             cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCC
Q 025141          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI  187 (257)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~  187 (257)
                      .+|.+||=|+...+..++.+...+     -++ ....|+.+.++.....||+|++|..-|.
T Consensus         8 ~rILvVDD~~~~~~~l~~~L~~~G-----~~v-~~a~~g~eal~~l~~~~dlillD~~mP~   62 (134)
T d1dcfa_           8 LKVLVMDENGVSRMVTKGLLVHLG-----CEV-TTVSSNEECLRVVSHEHKVVFMDVCMPG   62 (134)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTT-----CEE-EEESSHHHHHHHCCTTCSEEEEECCSST
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCC-----CEE-EEECCHHHHHHHhhcCCCeEEEEeccCC
Confidence            689999999999999888876432     133 3567888888766678999999987554

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=83.25  E-value=3.2  Score=29.35  Aligned_cols=76  Identities=14%  Similarity=0.195  Sum_probs=51.6

Q ss_pred             cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE--EEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCchHHHHHH
Q 025141          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEF  203 (257)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i--~~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~  203 (257)
                      .+|..||=++.+.+..++.+...      +....  ...|+.+.++.. ..+||+|++|..-|.       .-..+.++.
T Consensus         3 i~VLiVDD~~~~r~~l~~~L~~~------~~~~~v~~a~~~~~al~~~~~~~~DlvllD~~mP~-------~~G~el~~~   69 (138)
T d1a04a2           3 ATILLIDDHPMLRTGVKQLISMA------PDITVVGEASNGEQGIELAESLDPDLILLDLNMPG-------MNGLETLDK   69 (138)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTC------TTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTT-------SCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhC------CCcEEEEEECCHHHHHHHHHhcCCCEEEEecCCCC-------CCHHHHHHH
Confidence            48999999999999999887532      34443  367887777542 357999999986543       224577787


Q ss_pred             HHcCcCCCCcEEEE
Q 025141          204 VVKPRLNPEGIFVT  217 (257)
Q Consensus       204 ~~~~~L~pgGil~~  217 (257)
                       +++. .|...+++
T Consensus        70 -ir~~-~~~~~viv   81 (138)
T d1a04a2          70 -LREK-SLSGRIVV   81 (138)
T ss_dssp             -HHHS-CCCSEEEE
T ss_pred             -HHhh-CCCCCEEE
Confidence             5643 45554444

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=83.22  E-value=3.4  Score=28.52  Aligned_cols=76  Identities=13%  Similarity=0.125  Sum_probs=50.3

Q ss_pred             cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCchHHHHHHHH
Q 025141          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV  205 (257)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~  205 (257)
                      ++|.+||=|+.+.+..++.+...+  +   ++ ....|+.+.++.. ..+||+|++|..-|..       -..++.+. +
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~g--~---~v-~~a~~g~eal~~~~~~~~dlillD~~mP~~-------~G~el~~~-l   67 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKEG--Y---QT-FQAANGLQALDIVTKERPDLVLLDMKIPGM-------DGIEILKR-M   67 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTT--C---EE-EEESSHHHHHHHHHHHCCSEEEEESCCTTC-------CHHHHHHH-H
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcC--C---EE-EEeCCHHHHHHHHHhCCCCEEEEeccCCCC-------CHHHHHHH-H
Confidence            589999999999999999886432  1   22 3456777766432 3579999999875532       24577777 5


Q ss_pred             cCcCCCCcEEEE
Q 025141          206 KPRLNPEGIFVT  217 (257)
Q Consensus       206 ~~~L~pgGil~~  217 (257)
                      ++. .|+--+++
T Consensus        68 r~~-~~~~pvi~   78 (119)
T d1peya_          68 KVI-DENIRVII   78 (119)
T ss_dssp             HHH-CTTCEEEE
T ss_pred             HHh-CCCCcEEE
Confidence            643 45443333

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.95  E-value=1.8  Score=31.36  Aligned_cols=43  Identities=16%  Similarity=0.128  Sum_probs=30.4

Q ss_pred             CCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 025141          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (257)
Q Consensus       103 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (257)
                      .|+||+||+|-=+  +++.|.+. + -+|+++|.+++-.+...+.+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~-g-~~V~v~dr~~~~a~~l~~~~~   46 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDS-G-IKVTVACRTLESAKKLSAGVQ   46 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTT-T-CEEEEEESCHHHHHHHHTTCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-CEEEEEECChHHHHHHHhccc
Confidence            5899999986433  34555543 4 389999999998877666543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.78  E-value=5.5  Score=31.14  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=49.6

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~~-  171 (257)
                      +.|.+|+-|++.|.   +++.+++. + .+|..++.+++-++...+.+.        .+...+..|..+      .++. 
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~   74 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAE-G-AKVVFGDILDEEGKAMAAELA--------DAARYVHLDVTQPAQWKAAVDTA   74 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHTG--------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHhh--------CcceEEEeecCCHHHHHHHHHHH
Confidence            56889999988774   55666664 4 589999999988876665442        245666666532      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++.
T Consensus        75 ~~~~g~idilinnAG   89 (244)
T d1nffa_          75 VTAFGGLHVLVNNAG   89 (244)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCeEEEECCc
Confidence              2367899999875

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=82.45  E-value=0.68  Score=35.27  Aligned_cols=38  Identities=18%  Similarity=0.315  Sum_probs=27.7

Q ss_pred             cCCCCCeEEEEeccchHHHH--HHHhcCCCcEEEEEECCHHH
Q 025141           99 HHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDIDEEV  138 (257)
Q Consensus        99 ~~~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~VEid~~v  138 (257)
                      ....+++|++||+|-.++..  .+.+ .+ -+|+.+|-++..
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~-~G-~~Vtl~E~~~~~   78 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAA-RG-HQVTLFDAHSEI   78 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHT-TT-CEEEEEESSSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHh-hc-cceEEEeccCcc
Confidence            34568999999999888643  3333 33 589999988643

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=82.33  E-value=2.9  Score=31.14  Aligned_cols=72  Identities=18%  Similarity=0.216  Sum_probs=42.2

Q ss_pred             CCeEEEEeccchHHHHH----HHhcC--CCcEEEEEECCHHHHHHHHhh----hhhccCCCCCCCeEEE-EcchHHHHhc
Q 025141          103 PKTIFIMGGGEGSTARE----ILRHK--TVEKVVMCDIDEEVVEFCKSY----LVVNKEAFSDPRLELV-INDARAELES  171 (257)
Q Consensus       103 ~~~VL~IG~G~G~~~~~----l~~~~--~~~~v~~VEid~~vi~~a~~~----~~~~~~~~~~~rv~i~-~~Da~~~l~~  171 (257)
                      .-+|-+||+|+-+.+..    +++..  ...++..+|+|++-++.....    ....     ....++. ..|-.+-+  
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~-----~~~~~i~~~td~~eaL--   74 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEV-----GADLKFEKTMNLDDVI--   74 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHT-----TCCCEEEEESCHHHHH--
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhc-----CCCeEEEEeCChhhcc--
Confidence            35899999987554322    33322  235899999999877653332    2222     2334443 35655555  


Q ss_pred             CCCceeEEEEcC
Q 025141          172 RKESYDVIIGDL  183 (257)
Q Consensus       172 ~~~~fDvIi~D~  183 (257)
                        ...|+|+...
T Consensus        75 --~dad~Vv~~~   84 (171)
T d1obba1          75 --IDADFVINTA   84 (171)
T ss_dssp             --TTCSEEEECC
T ss_pred             --cCCCeEeeec
Confidence              3468888764

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=82.23  E-value=3.2  Score=29.56  Aligned_cols=75  Identities=13%  Similarity=0.197  Sum_probs=51.4

Q ss_pred             EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHc
Q 025141          128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK  206 (257)
Q Consensus       128 ~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~  206 (257)
                      +|..||=|+.+.+..++.+...+     -.+ ....|+.+.+... ..+||+|++|..-|.       .-..++++. ++
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g-----~~v-~~~~~~~~al~~l~~~~~dlil~D~~mP~-------~~G~el~~~-lr   67 (140)
T d1qkka_           2 SVFLIDDDRDLRKAMQQTLELAG-----FTV-SSFASATEALAGLSADFAGIVISDIRMPG-------MDGLALFRK-IL   67 (140)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTT-----CEE-EEESCHHHHHHTCCTTCCSEEEEESCCSS-------SCHHHHHHH-HH
T ss_pred             EEEEEECCHHHHHHHHHHHHHCC-----CEE-EEeCChHHHHHHHhccCcchHHHhhccCC-------CCHHHHHHH-HH
Confidence            68899999999999999886432     133 3457888877654 367999999986543       224577777 56


Q ss_pred             CcCCCCc-EEEE
Q 025141          207 PRLNPEG-IFVT  217 (257)
Q Consensus       207 ~~L~pgG-il~~  217 (257)
                      +. .|+- ++++
T Consensus        68 ~~-~~~~pvI~l   78 (140)
T d1qkka_          68 AL-DPDLPMILV   78 (140)
T ss_dssp             HH-CTTSCEEEE
T ss_pred             Hh-CCCCcEEEE
Confidence            54 4554 4443

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.91  E-value=6.2  Score=28.59  Aligned_cols=77  Identities=19%  Similarity=0.207  Sum_probs=40.9

Q ss_pred             CeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025141          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (257)
Q Consensus       104 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~  181 (257)
                      .+|-+||+|.  +.++..+.. .+..++..+|++++..+.-..-+.... .+...+..+...+-.+-+    ..-|+|++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~-~~l~el~L~Di~~~~~~g~a~Dl~~~~-~~~~~~~~v~~~~~~~~~----~~advvvi   77 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQ-KNLGDVVLFDIVKNMPHGKALDTSHTN-VMAYSNCKVSGSNTYDDL----AGADVVIV   77 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSSSSHHHHHHHHHHTHH-HHHTCCCCEEEECCGGGG----TTCSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCCeEEEEeccCCcceeeecchhhhc-cccCCCcEEEeccccccc----CCCcEEEE
Confidence            5899999874  334443333 456789999999877653322221100 001123344433322222    44788888


Q ss_pred             cCCCC
Q 025141          182 DLADP  186 (257)
Q Consensus       182 D~~~~  186 (257)
                      -.-.+
T Consensus        78 tag~~   82 (150)
T d1t2da1          78 TAGFT   82 (150)
T ss_dssp             CCSCS
T ss_pred             ecccc
Confidence            76543

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.64  E-value=3.5  Score=28.88  Aligned_cols=73  Identities=16%  Similarity=0.246  Sum_probs=47.2

Q ss_pred             EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh---c---CCCceeEEEEcCCCCCCCCcccCCchHHHH
Q 025141          128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE---S---RKESYDVIIGDLADPIEGGPCYKLYTKSFY  201 (257)
Q Consensus       128 ~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~---~---~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~  201 (257)
                      +|-+||=|+...+..++.+...+    -..++ ...|+.+.++   .   ..++||+|++|..-|.       .-..+..
T Consensus         3 rVLvVDD~~~~~~~l~~~L~~~g----~~~v~-~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~-------~dG~el~   70 (128)
T d2r25b1           3 KILVVEDNHVNQEVIKRMLNLEG----IENIE-LACDGQEAFDKVKELTSKGENYNMIFMDVQMPK-------VDGLLST   70 (128)
T ss_dssp             CEEEECSCHHHHHHHHHHHHHTT----CCCEE-EESSHHHHHHHHHHHHHHTCCCSEEEECSCCSS-------SCHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcC----CeEEE-EEcChHHHHHHHHhhhhccCCCCEEEEEeCCCC-------CCHHHHH
Confidence            68899999999999998886432    12344 3456655443   2   3578999999986543       2245666


Q ss_pred             HHHHcCcCCCCc
Q 025141          202 EFVVKPRLNPEG  213 (257)
Q Consensus       202 ~~~~~~~L~pgG  213 (257)
                      +. +++...+.-
T Consensus        71 ~~-ir~~~~~~~   81 (128)
T d2r25b1          71 KM-IRRDLGYTS   81 (128)
T ss_dssp             HH-HHHHSCCCS
T ss_pred             HH-HHHccCCCC
Confidence            76 565444444

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.62  E-value=2.1  Score=33.60  Aligned_cols=74  Identities=16%  Similarity=0.197  Sum_probs=48.7

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-----HhcC
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LESR  172 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-----l~~~  172 (257)
                      -+.|.+|+.|++.|.   +++.+++. + .+|..++.+++-++...+..         +.+..+..|..+.     +-..
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~-G-~~V~~~~r~~~~l~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~~   73 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHAT-G-ARVVAVSRTQADLDSLVREC---------PGIEPVCVDLGDWEATERALGS   73 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHS---------TTCEEEECCTTCHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHHHHhc---------CCCeEEEEeCCCHHHHHHHHHH
Confidence            367899999998773   55666664 4 58999999998877655433         2344455554221     1123


Q ss_pred             CCceeEEEEcCCC
Q 025141          173 KESYDVIIGDLAD  185 (257)
Q Consensus       173 ~~~fDvIi~D~~~  185 (257)
                      -++.|+++.++..
T Consensus        74 ~g~iDilVnnAg~   86 (244)
T d1pr9a_          74 VGPVDLLVNNAAV   86 (244)
T ss_dssp             CCCCCEEEECCCC
T ss_pred             hCCceEEEecccc
Confidence            3689999988753

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=81.47  E-value=10  Score=29.49  Aligned_cols=75  Identities=19%  Similarity=0.247  Sum_probs=49.9

Q ss_pred             CCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh---
Q 025141          103 PKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE---  170 (257)
Q Consensus       103 ~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~---  170 (257)
                      .|-+|+-|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...     ..++..+..|..+.      ++   
T Consensus         2 gKValITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~l~~~~~~l~~~-----g~~~~~~~~Dvs~~~~v~~~~~~~~   74 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKE-G-LRVFVCARGEEGLRTTLKELREA-----GVEADGRTCDVRSVPEIEALVAAVV   74 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEeecCCHHHHHHHHHHHH
Confidence            4556888876554   34555553 4 58999999998888777665432     24678888776332      22   


Q ss_pred             cCCCceeEEEEcCC
Q 025141          171 SRKESYDVIIGDLA  184 (257)
Q Consensus       171 ~~~~~fDvIi~D~~  184 (257)
                      +.-++.|+++.++-
T Consensus        75 ~~~g~iDilVnnAG   88 (257)
T d2rhca1          75 ERYGPVDVLVNNAG   88 (257)
T ss_dssp             HHTCSCSEEEECCC
T ss_pred             HHhCCCCEEEeccc
Confidence            22367999998875

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.27  E-value=2.4  Score=33.61  Aligned_cols=77  Identities=18%  Similarity=0.228  Sum_probs=51.8

Q ss_pred             CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh-
Q 025141          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-  170 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~-  170 (257)
                      -+.|.+|+-|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...     ..++..+..|..+.      ++ 
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~-G-a~V~~~~r~~~~~~~~~~~l~~~-----g~~~~~~~~Dvs~~~~~~~~~~~   81 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATA-G-ASVVVSDINADAANHVVDEIQQL-----GGQAFACRCDITSEQELSALADF   81 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHc-----CCcEEEEEccCCCHHHHHHHHHH
Confidence            367889988887655   33444443 3 68999999998887777655432     24677788886442      21 


Q ss_pred             --cCCCceeEEEEcCC
Q 025141          171 --SRKESYDVIIGDLA  184 (257)
Q Consensus       171 --~~~~~fDvIi~D~~  184 (257)
                        +.-++.|+++.++.
T Consensus        82 ~~~~~g~iDilvnnAG   97 (255)
T d1fmca_          82 AISKLGKVDILVNNAG   97 (255)
T ss_dssp             HHHHHSSCCEEEECCC
T ss_pred             HHHHcCCCCEeeeCCc
Confidence              12367999998875

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.04  E-value=0.99  Score=34.49  Aligned_cols=102  Identities=18%  Similarity=0.317  Sum_probs=63.6

Q ss_pred             CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-----cCCCC-C------------CCeEEEEc
Q 025141          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAFS-D------------PRLELVIN  163 (257)
Q Consensus       104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~~~~~-~------------~rv~i~~~  163 (257)
                      ++|-+||+|.=+  ++..+++. + -+|+.+|.|++.++.+++.....     ...+. .            .+++.. .
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~-G-~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~   81 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAAT-G-HTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-T   81 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-S
T ss_pred             EEEEEECcCHHHHHHHHHHHhC-C-CcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-c
Confidence            689999998644  34444443 4 58999999999999888765311     00010 0            122222 2


Q ss_pred             chHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025141          164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (257)
Q Consensus       164 Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~  220 (257)
                      |..+.+    ...|+|+=..++..       -.-++.|++ +.+.++++-+++.|+.
T Consensus        82 d~~~a~----~~ad~ViEav~E~l-------~~K~~v~~~-l~~~~~~~~ilasnTS  126 (192)
T d1f0ya2          82 DAASVV----HSTDLVVEAIVENL-------KVKNELFKR-LDKFAAEHTIFASNTS  126 (192)
T ss_dssp             CHHHHT----TSCSEEEECCCSCH-------HHHHHHHHH-HTTTSCTTCEEEECCS
T ss_pred             hhHhhh----cccceehhhcccch-------hHHHHHHHH-HhhhcccCceeeccCc
Confidence            222222    34688887665321       124688898 7999999999998864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.97  E-value=6.1  Score=30.92  Aligned_cols=73  Identities=23%  Similarity=0.333  Sum_probs=49.3

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~~-  171 (257)
                      +.|.+|+.|++.|.   +++.+++. + .+|.+++.+++-++.+.+.+        .+++..+..|..+      .++. 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~-G-a~V~~~~r~~~~l~~~~~~~--------~~~~~~~~~Dvt~~~~v~~~~~~~   73 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVRE-G-ARVAIADINLEAARATAAEI--------GPAACAIALDVTDQASIDRCVAEL   73 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHT-T-EEEEEEESCHHHHHHHHHHH--------CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHh--------CCceEEEEeeCCCHHHHHHHHHHH
Confidence            56889999987764   45566664 4 68999999988776655433        1456677777633      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025141          172 --RKESYDVIIGDLA  184 (257)
Q Consensus       172 --~~~~fDvIi~D~~  184 (257)
                        .-++.|+++.++.
T Consensus        74 ~~~~g~iDilVnnAg   88 (256)
T d1k2wa_          74 LDRWGSIDILVNNAA   88 (256)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCccEEEeecc
Confidence              2367999999875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=80.94  E-value=2  Score=31.72  Aligned_cols=46  Identities=11%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             CCCCeEEEEeccchHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhh
Q 025141          101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (257)
Q Consensus       101 ~~~~~VL~IG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~  146 (257)
                      ++.++||+||+|+-+-+ ...++..+..+|+++.-+++-.+...+.+
T Consensus        15 ~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~   61 (167)
T d1npya1          15 NKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY   61 (167)
T ss_dssp             CTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence            45689999999865533 23333345678999999888665544444

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.75  E-value=0.61  Score=34.73  Aligned_cols=38  Identities=21%  Similarity=0.256  Sum_probs=27.7

Q ss_pred             CCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHH
Q 025141          102 NPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVE  140 (257)
Q Consensus       102 ~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~  140 (257)
                      .++||++||+|-.++  +.++.++ +...|+++|-.+.+-.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~-G~~~V~v~E~~~~~gg   42 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARL-GYSDITIFEKQEYVGG   42 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSCST
T ss_pred             CCCEEEEECChHHHHHHHHHHHHC-CCCeEEEEEecCcccc
Confidence            468999999998886  4555554 4446999998876643

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=80.63  E-value=2.4  Score=30.45  Aligned_cols=69  Identities=16%  Similarity=0.186  Sum_probs=45.4

Q ss_pred             CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE-EEcchHH---HHhcC-----CCceeEEEEcCCCCCCCCcccCCc
Q 025141          126 VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARA---ELESR-----KESYDVIIGDLADPIEGGPCYKLY  196 (257)
Q Consensus       126 ~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i-~~~Da~~---~l~~~-----~~~fDvIi~D~~~~~~~~p~~~L~  196 (257)
                      .++|..||=|+...+..++.+...+     -..++ ...|+.+   +++..     ..+||+|++|..-|.       .-
T Consensus         3 pk~ILiVdD~~~~~~~l~~~L~~~g-----~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~mP~-------~~   70 (144)
T d1i3ca_           3 PKVILLVEDSKADSRLVQEVLKTST-----IDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPK-------KD   70 (144)
T ss_dssp             CEEEEEECCCHHHHHHHHHHHHSCC-----SCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSS-------SC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECcccc-------cc
Confidence            3689999999999999998886431     22333 4556555   44432     346999999986543       22


Q ss_pred             hHHHHHHHHcC
Q 025141          197 TKSFYEFVVKP  207 (257)
Q Consensus       197 t~ef~~~~~~~  207 (257)
                      ..++.+. +++
T Consensus        71 G~el~~~-ir~   80 (144)
T d1i3ca_          71 GREVLAE-IKQ   80 (144)
T ss_dssp             HHHHHHH-HHH
T ss_pred             chHHHHH-HHh
Confidence            4567776 554

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=80.62  E-value=7.9  Score=27.73  Aligned_cols=109  Identities=17%  Similarity=0.257  Sum_probs=54.4

Q ss_pred             CCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025141          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (257)
Q Consensus       103 ~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi  180 (257)
                      |.+|-+||+|.  ..++..++...-..++..+|++++..+.-..-+.... .+ .+..++...+-.+-+    ..-|+|+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~-~~-~~~~~i~~~~~~~~~----~daDvVV   74 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS-SF-YPTVSIDGSDDPEIC----RDADMVV   74 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG-GG-STTCEEEEESCGGGG----TTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhcc-cc-CCCceeecCCCHHHh----hCCcEEE
Confidence            57899999862  2233444444444689999999987543211121110 01 123344433322222    2359999


Q ss_pred             EcCCCCCCCCcc-cCCc--hH----HHHHHHHcCcCCCCcEEEEec
Q 025141          181 GDLADPIEGGPC-YKLY--TK----SFYEFVVKPRLNPEGIFVTQA  219 (257)
Q Consensus       181 ~D~~~~~~~~p~-~~L~--t~----ef~~~~~~~~L~pgGil~~~~  219 (257)
                      +.+-.+...+.. ..|+  +.    ++... ++ .-.|+|++++-+
T Consensus        75 itaG~~~~~g~~R~dl~~~N~~i~~~i~~~-i~-~~~p~ai~ivvt  118 (143)
T d1llda1          75 ITAGPRQKPGQSRLELVGATVNILKAIMPN-LV-KVAPNAIYMLIT  118 (143)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHH-HH-HHCTTSEEEECC
T ss_pred             EecccccCCCCchhhhhhhhHHHHHHHHHH-HH-hhCCCeEEEEeC
Confidence            987644321110 1122  12    33333 23 347889887643

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=80.49  E-value=7.2  Score=30.22  Aligned_cols=74  Identities=16%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 025141          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (257)
Q Consensus       102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~-  171 (257)
                      +.|.+|+.|++.|.   +++.+++. + .+|..++.+.+-++...+.+        ..++..+..|..+.      ++. 
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dls~~~~i~~~~~~i   73 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFARE-G-ASLVAVDREERLLAEAVAAL--------EAEAIAVVADVSDPKAVEAVFAEA   73 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHTC--------CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHc--------CCceEEEEecCCCHHHHHHHHHHH
Confidence            57889999998665   34555553 3 69999999998776555432        24666777776432      221 


Q ss_pred             --CCCceeEEEEcCCC
Q 025141          172 --RKESYDVIIGDLAD  185 (257)
Q Consensus       172 --~~~~fDvIi~D~~~  185 (257)
                        .-++.|+++.++..
T Consensus        74 ~~~~g~iDiLinnAg~   89 (241)
T d2a4ka1          74 LEEFGRLHGVAHFAGV   89 (241)
T ss_dssp             HHHHSCCCEEEEGGGG
T ss_pred             HHHhCCccEecccccc
Confidence              22679999998753

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=80.07  E-value=1.5  Score=33.01  Aligned_cols=91  Identities=19%  Similarity=0.249  Sum_probs=47.6

Q ss_pred             CCeEEEEecc---chHHHHHHHhcCCCcEEEE-EECC---HHHHHHHHhhhhhccCCCCCCCeEEEEc---c-------h
Q 025141          103 PKTIFIMGGG---EGSTAREILRHKTVEKVVM-CDID---EEVVEFCKSYLVVNKEAFSDPRLELVIN---D-------A  165 (257)
Q Consensus       103 ~~~VL~IG~G---~G~~~~~l~~~~~~~~v~~-VEid---~~vi~~a~~~~~~~~~~~~~~rv~i~~~---D-------a  165 (257)
                      ..+||++.+|   .|..+.++++..+. +|++ +.-.   ++..+.+++. +.      +   .++..   |       .
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~l-Ga------d---~vi~~~~~~~~~~~~~v   97 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKEL-GA------T---QVITEDQNNSREFGPTI   97 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHH-TC------S---EEEEHHHHHCGGGHHHH
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhc-cc------c---EEEeccccchhHHHHHH
Confidence            4689998433   34567778887665 5554 4332   2333344432 10      1   12221   1       1


Q ss_pred             HHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025141          166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (257)
Q Consensus       166 ~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~  218 (257)
                      .+..+.....+|+|+ |..     +       .+.+.. ..+.|+|+|.++.-
T Consensus        98 ~~~~~~~g~~vdvv~-D~v-----g-------~~~~~~-~~~~l~~~G~~v~~  136 (189)
T d1gu7a2          98 KEWIKQSGGEAKLAL-NCV-----G-------GKSSTG-IARKLNNNGLMLTY  136 (189)
T ss_dssp             HHHHHHHTCCEEEEE-ESS-----C-------HHHHHH-HHHTSCTTCEEEEC
T ss_pred             HHHHhhccCCceEEE-ECC-----C-------cchhhh-hhhhhcCCcEEEEE
Confidence            122222356799988 332     1       123445 46789999999864