Citrus Sinensis ID: 025173

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MPSSELVMDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYSQL
Secondary Structure (PSIPRED)
ccccHHHHccccccccccccEEEHHHHHcccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHccccccccccEEccccccEEEEEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEccEEEEcccccccccEEEEccccccccHHHEEEcccccccEEEEEcccHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHcccccccccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEccHHHHHHHcccccccccccEccccEEEEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccHHHHHccccccccccEEEccEEEEcccccccccEcEEEEEHHHEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEEccHcHHHHccc
Coil and Loop (DISEMBL)
mpsselvmdnknasstagKIIRCRAaisripgkplvmeeievdppkagEVRIKILCTSLchsdvtfwrstqppmavfprilgHEAVGVVEsvgggveevregdlvlpvfqgdcgecrdckspksnicskfvnkdnqsmprdgtnrfRDLKGEVIHNvlnvssfteytVVDVTHvvkitpdiplDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKftrhtphilptLILMSEVQEMYSQL
Flexible Loop (DISEMBL)
mpsselvmdnknasstagkiircraaisripgkplvmeeIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKspksnicskfvnkdnqsmprdGTNRFRDLKGEVIHNVlnvssfteyTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYSQL
Low Complexity Region (SEG)
MPSSELVMDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILgheavgvvesvgggveevregDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYSQL
Disordered region (IsUnstruct)
******************KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSP*SNICSKF***************FRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSE********
Disordered Region (DISOPRED)
********************IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYSQL
Disordered Region (DISEMBL)
**************STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYSQL
Disordered Region (DISPRO)
*****************GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY**L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSSELVMDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYSQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q9SK87	386	Alcohol dehydrogenase-lik	yes	no	0.859	0.569	0.651	3e-78
Q9SK86	388	Alcohol dehydrogenase-lik	no	no	0.847	0.559	0.628	9e-75
Q9FH04	390	Alcohol dehydrogenase-lik	no	no	0.843	0.553	0.647	5e-74
Q0V7W6	389	Alcohol dehydrogenase-lik	no	no	0.808	0.532	0.653	2e-73
P48977	380	Alcohol dehydrogenase OS=	N/A	no	0.808	0.544	0.580	1e-62
P13603	380	Alcohol dehydrogenase 1 O	N/A	no	0.808	0.544	0.570	5e-62
P12886	380	Alcohol dehydrogenase 1 O	N/A	no	0.808	0.544	0.570	2e-61
P06525	379	Alcohol dehydrogenase cla	no	no	0.808	0.546	0.561	7e-61
P14674	380	Alcohol dehydrogenase 2 O	N/A	no	0.808	0.544	0.575	9e-61
P14675	380	Alcohol dehydrogenase 3 O	N/A	no	0.808	0.544	0.575	1e-60

>sp|Q9SK87|ADHL2_ARATH Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1

 Score =  291 bits (746), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/221 (65%), Positives = 177/221 (80%), Gaps = 1/221 (0%)

Query: 12  NASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ 71
            AS T GK IRC+AAI R  G+PLV+EEI+VDPP+A EVRIKILCTSLCH+DVTFW+   
Sbjct: 3   KASITEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDS 62

Query: 72  PPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFV 131
            P+A FPRILGHEAVGVVES+G  V+  ++GD+VLPVF   C EC++C SPKSN C+K+ 
Sbjct: 63  GPLARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYT 122

Query: 132 NKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           N    +  R G T+RF+D +GE IH+ + VSSFTEYTVVD+ H+VKI+P+IP+DIA LLS
Sbjct: 123 NDYLSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLS 182

Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLK 231
           C V+TGLGAAWKVA+VEEGSTV IFGLGAVGL+V   + L+
Sbjct: 183 CSVATGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLR 223

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q9SK86|ADHL1_ARATH Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1

 Score =  280 bits (715), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 137/218 (62%), Positives = 170/218 (77%), Gaps = 1/218 (0%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           MD    SS  GK I C+AAI R  G+ LV+E+I VDPP+A EVRIKILCTSLCH+D+TFW
Sbjct: 1   MDKTFFSSNEGKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFW 60

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           + +  P++ FPRILGHEAVGVVES+G  V+  ++GD+VLPVF   C EC+DCKS K+N C
Sbjct: 61  KLSFGPISRFPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWC 120

Query: 128 SKFVNKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
            ++      +  R G  +RF+D  GEVIH+ L VSSF+EYTVVD+ H+VKI+P+IP+D A
Sbjct: 121 DRYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKA 180

Query: 187 CLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
            LLSCGVSTG+GAAWKVA VEEGST+AIFGLGAVGL+V
Sbjct: 181 ALLSCGVSTGIGAAWKVANVEEGSTIAIFGLGAVGLAV 218

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1

 Score =  277 bits (709), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/221 (64%), Positives = 174/221 (78%), Gaps = 5/221 (2%)

Query: 8   MDNKNASS---TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDV 64
           M+N N+SS   ++ K IRC+AA+SR  G+PLVMEEI V PP+  EVRI+I+CT+LCHSDV
Sbjct: 1   MENGNSSSDNKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDV 60

Query: 65  TFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKS 124
           TFW+   PP A FPRILGHEA+GVVESVG  V+EV EGD VLP F  DCG+C DCKS KS
Sbjct: 61  TFWKLQVPP-ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKS 119

Query: 125 NICSKFVNKDNQSMPR-DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL 183
           N+CSKF  K +  MPR D ++RF DL GE + + LNVSSF+EYTV+DV +VVKI   IP 
Sbjct: 120 NLCSKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPP 179

Query: 184 DIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
             ACLLSCGVSTG+GAAW+ A+VE+GSTV IFGLG++GL+V
Sbjct: 180 SRACLLSCGVSTGVGAAWETAKVEKGSTVVIFGLGSIGLAV 220

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0V7W6|ADHL5_ARATH Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1

 Score =  275 bits (704), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/208 (65%), Positives = 168/208 (80%), Gaps = 1/208 (0%)

Query: 18  GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF 77
           GK IRC+AA+SR PG+ LV+EEI VDPP+A EVRIKI+CTSLCH+DV+F +    P+A F
Sbjct: 12  GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARF 71

Query: 78  PRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS 137
           PRILGHEAVGV+ES+G  V   ++GD+VLPVF   C ECRDCKS KSN C++F +    +
Sbjct: 72  PRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSN 131

Query: 138 MPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
             R G T+RF+D  GE I++ L VSSF+EYTVVD+ H+VKI+PDIP+D A LLSCGVSTG
Sbjct: 132 TRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTG 191

Query: 197 LGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
           +GAAWKVA VE+GSTVA+FGLGAVGL+V
Sbjct: 192 IGAAWKVANVEKGSTVAVFGLGAVGLAV 219

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P48977|ADH_MALDO Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 158/212 (74%), Gaps = 5/212 (2%)

Query: 14  SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QP 72
           S+TAG++IRCRAA++   GKPLV+EE+EV PP+A EVRIKIL TSLCH+DV FW +  Q 
Sbjct: 2   SNTAGQVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQN 61

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-V 131
           P+  FPRI GHEA G+VESVG GV +++ GD VLPVF G+C +C  CKS +SN+C    +
Sbjct: 62  PL--FPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKDCAHCKSEESNMCDLLRI 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
           N D   M  DG +RF  +KG+ I++ +  S+F+EYTVV V  + KI P  PLD  CLLSC
Sbjct: 120 NTDRGVMLSDGKSRF-SIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSC 178

Query: 192 GVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLS 223
           G+STGLGA   VA+ ++GSTVA+FGLGAVGL+
Sbjct: 179 GISTGLGATLNVAKPKKGSTVAVFGLGAVGLA 210

Malus domestica (taxid: 3750)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P13603|ADH1_TRIRP Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1

 Score =  237 bits (605), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 121/212 (57%), Positives = 156/212 (73%), Gaps = 5/212 (2%)

Query: 14  SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QP 72
           S+TAG++I+CRAA++   GKPLV+EE+EV PP+AGEVR+KIL TSLCH+DV FW +  Q 
Sbjct: 2   SNTAGQVIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQT 61

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-V 131
           P+  FPRI GHEA G+VESVG GV  ++ GD  LPVF G+CGEC  CKS +SN+C+   +
Sbjct: 62  PL--FPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCNLLRI 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
           N D   M  D  +RF  +KG+ +H+ +  S+F+EYTVV    V KI PD PLD  C+LSC
Sbjct: 120 NTDRGVMINDNKSRF-SIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSC 178

Query: 192 GVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLS 223
           G+ TGLGA   VA+ + GS+VAIFGLGAVGL+
Sbjct: 179 GICTGLGATVNVAKPKPGSSVAIFGLGAVGLA 210

Trifolium repens (taxid: 3899)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P12886|ADH1_PEA Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/212 (57%), Positives = 154/212 (72%), Gaps = 5/212 (2%)

Query: 14  SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QP 72
           S+T G+II+CRAA++   GKPLV+EE+EV PP+AGEVR+KIL TSLCH+DV FW +  Q 
Sbjct: 2   SNTVGQIIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQT 61

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-V 131
           P+  FPRI GHEA G+VESVG GV  ++ GD  LPVF G+CGEC  CKS +SN+C    +
Sbjct: 62  PL--FPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRI 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
           N D   M  D  +RF  +KG+ +H+ +  S+F+EYTVV    V KI PD PLD  C+LSC
Sbjct: 120 NTDRGVMLNDNKSRF-SIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSC 178

Query: 192 GVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLS 223
           G+ TGLGA   VA+ + GS+VAIFGLGAVGL+
Sbjct: 179 GICTGLGATINVAKPKPGSSVAIFGLGAVGLA 210

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P06525|ADH1_ARATH Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2

 Score =  233 bits (595), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 119/212 (56%), Positives = 153/212 (72%), Gaps = 5/212 (2%)

Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QPP 73
           ST G+IIRC+AA++   GKPLV+EE+EV PP+  EVRIKIL TSLCH+DV FW +  Q P
Sbjct: 2   STTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTP 61

Query: 74  MAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-VN 132
           +  FPRI GHEA G+VESVG GV +++ GD VLP+F G+CGECR C S +SN+C    +N
Sbjct: 62  L--FPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRIN 119

Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            +   M  DG +RF  + G+ I++ L  S+F+EYTVV    V KI PD PLD  C++SCG
Sbjct: 120 TERGGMIHDGESRF-SINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCG 178

Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
           +STGLGA   VA+ ++G +VAIFGLGAVGL  
Sbjct: 179 LSTGLGATLNVAKPKKGQSVAIFGLGAVGLGA 210

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P14674|ADH2_SOLTU Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1

 Score =  233 bits (594), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 122/212 (57%), Positives = 155/212 (73%), Gaps = 5/212 (2%)

Query: 14  SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QP 72
           S+T G++IRC+AA++   GKPLVMEE++V PP+  EVR+KIL TSLCH+DV FW +  Q 
Sbjct: 2   STTTGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQN 61

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-V 131
           P  VFPRILGHEA G+VESVG GV E+  GD VLPVF G+C +C  CKS +SN+CS   +
Sbjct: 62  P--VFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRI 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
           N D   M  DG +RF  + G+ I++ +  S+F+EYTVV V  V KI P  PLD  C+LSC
Sbjct: 120 NTDRGVMINDGQSRF-SINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSC 178

Query: 192 GVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLS 223
           G+STGLGA   VA+  +GS+VAIFGLGAVGL+
Sbjct: 179 GISTGLGATLNVAKPTKGSSVAIFGLGAVGLA 210

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P14675|ADH3_SOLTU Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 122/212 (57%), Positives = 155/212 (73%), Gaps = 5/212 (2%)

Query: 14  SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QP 72
           S+T G++IRC+AA++   GKPLVMEE++V PP+  EVR+KIL TSLCH+DV FW +  Q 
Sbjct: 2   STTVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQN 61

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-V 131
           P  VFPRILGHEA G+VESVG GV E+  GD VLPVF G+C +C  CKS +SN+CS   +
Sbjct: 62  P--VFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRI 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
           N D   M  DG +RF  + G+ I++ +  S+F+EYTVV V  V KI P  PLD  C+LSC
Sbjct: 120 NTDRGVMINDGQSRF-SINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSC 178

Query: 192 GVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLS 223
           G+STGLGA   VA+  +GS+VAIFGLGAVGL+
Sbjct: 179 GISTGLGATLNVAKPTKGSSVAIFGLGAVGLA 210

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
359492460	408	PREDICTED: alcohol dehydrogenase-like 1	0.847	0.531	0.705	2e-84
302141994	387	unnamed protein product [Vitis vinifera]	0.847	0.560	0.705	2e-84
357465103	391	Alcohol dehydrogenase-like protein [Medi	0.773	0.506	0.743	3e-80
297845266	388	hypothetical protein ARALYDRAFT_472484 [	0.875	0.577	0.657	5e-80
359492331	395	PREDICTED: alcohol dehydrogenase-like 7-	0.820	0.531	0.672	1e-76
15219884	386	alcohol dehydrogenase-like 2 [Arabidopsi	0.859	0.569	0.651	1e-76
225459818	384	PREDICTED: alcohol dehydrogenase-like 7	0.824	0.549	0.665	1e-74
449453073	676	PREDICTED: alcohol dehydrogenase-like 7-	0.843	0.319	0.631	2e-74
297845264	388	hypothetical protein ARALYDRAFT_472482 [	0.847	0.559	0.633	4e-73
15219882	388	alcohol dehydrogenase-like 1 [Arabidopsi	0.847	0.559	0.628	5e-73

>gi|359492460|ref|XP_002285748.2| PREDICTED: alcohol dehydrogenase-like 1 [Vitis vinifera]

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 153/217 (70%), Positives = 181/217 (83%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           M+ KN+S TAGK I C+AAI + PG+ LV+EEIEV PP+A E+RIKILCTSLCH+DVTFW
Sbjct: 22  MEKKNSSETAGKAITCKAAICKEPGEALVIEEIEVAPPEAWEIRIKILCTSLCHTDVTFW 81

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           +    P   FP+ILGHEAVGVVESVG  VEEV+EGDLV+PVF   C ECRDC S KSN+C
Sbjct: 82  KMNDGPERSFPKILGHEAVGVVESVGEHVEEVKEGDLVVPVFLPSCKECRDCTSTKSNLC 141

Query: 128 SKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIAC 187
           +KF +K  Q MPRDG++RFR++KGEV+H+ L VSSF EYTVVD+ HVV++  +IP D AC
Sbjct: 142 TKFGSKFYQGMPRDGSSRFRNMKGEVVHHFLFVSSFVEYTVVDIAHVVRLNHEIPADKAC 201

Query: 188 LLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
           LLSCGVSTG+GAAWKVAEVEEGSTVAIFGLGAVGL+V
Sbjct: 202 LLSCGVSTGIGAAWKVAEVEEGSTVAIFGLGAVGLAV 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141994|emb|CBI19197.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 153/217 (70%), Positives = 181/217 (83%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           M+ KN+S TAGK I C+AAI + PG+ LV+EEIEV PP+A E+RIKILCTSLCH+DVTFW
Sbjct: 1   MEKKNSSETAGKAITCKAAICKEPGEALVIEEIEVAPPEAWEIRIKILCTSLCHTDVTFW 60

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           +    P   FP+ILGHEAVGVVESVG  VEEV+EGDLV+PVF   C ECRDC S KSN+C
Sbjct: 61  KMNDGPERSFPKILGHEAVGVVESVGEHVEEVKEGDLVVPVFLPSCKECRDCTSTKSNLC 120

Query: 128 SKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIAC 187
           +KF +K  Q MPRDG++RFR++KGEV+H+ L VSSF EYTVVD+ HVV++  +IP D AC
Sbjct: 121 TKFGSKFYQGMPRDGSSRFRNMKGEVVHHFLFVSSFVEYTVVDIAHVVRLNHEIPADKAC 180

Query: 188 LLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
           LLSCGVSTG+GAAWKVAEVEEGSTVAIFGLGAVGL+V
Sbjct: 181 LLSCGVSTGIGAAWKVAEVEEGSTVAIFGLGAVGLAV 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465103|ref|XP_003602833.1| Alcohol dehydrogenase-like protein [Medicago truncatula] gi|355491881|gb|AES73084.1| Alcohol dehydrogenase-like protein [Medicago truncatula]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/199 (74%), Positives = 174/199 (87%), Gaps = 1/199 (0%)

Query: 18  GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR-STQPPMAV 76
           GK IRC+AAI +  G+PLV+EE+E+DPPK+ EVRIKILCTSLCHSDVTFW+ ++  P A 
Sbjct: 13  GKPIRCKAAICKKSGEPLVIEEVELDPPKSWEVRIKILCTSLCHSDVTFWKMNSSAPTAR 72

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           FPRILGHEAVG+VESVG  VEEV+EGDLV+PVF  +CGEC DC S KSN C+KF NK  +
Sbjct: 73  FPRILGHEAVGLVESVGENVEEVKEGDLVVPVFLPNCGECIDCGSTKSNNCTKFGNKPIR 132

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            MPRDGT+RFRD+KGEV+H++L VSSF+EYTVVDVTHVVKIT DIPLD ACLLSCGVSTG
Sbjct: 133 DMPRDGTSRFRDMKGEVVHHLLGVSSFSEYTVVDVTHVVKITHDIPLDKACLLSCGVSTG 192

Query: 197 LGAAWKVAEVEEGSTVAIF 215
           +GAAWKVA+VE+G+TVAIF
Sbjct: 193 IGAAWKVADVEKGTTVAIF 211

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845266|ref|XP_002890514.1| hypothetical protein ARALYDRAFT_472484 [Arabidopsis lyrata subsp. lyrata] gi|297336356|gb|EFH66773.1| hypothetical protein ARALYDRAFT_472484 [Arabidopsis lyrata subsp. lyrata]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 148/225 (65%), Positives = 183/225 (81%), Gaps = 1/225 (0%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           MD  + SST GK IRC+AAI R  G+ LV+EEI+VDPP+A EVRIKILCTSLCH+DVTFW
Sbjct: 1   MDKASLSSTEGKPIRCKAAILRKAGEALVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFW 60

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           +    P+A FPRILGHEAVGVVES+G  V+  ++GD+VLPVFQ  C EC++CKSPKSN C
Sbjct: 61  KLESGPLARFPRILGHEAVGVVESIGANVDGFKQGDVVLPVFQPQCEECKECKSPKSNWC 120

Query: 128 SKFVNKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
           +++ N    +  R G T+RF+D  GEVIH+ + VSSFTEYTVVD+ H+VKI+P+IP+DIA
Sbjct: 121 TRYTNDFLSNTRRYGMTSRFKDSFGEVIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIA 180

Query: 187 CLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLK 231
            LLSCGV+TG+GAAWKVA+VEEGSTVAIFGLGAVGL+V   + L+
Sbjct: 181 ALLSCGVATGIGAAWKVADVEEGSTVAIFGLGAVGLAVAEGVRLR 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492331|ref|XP_002285917.2| PREDICTED: alcohol dehydrogenase-like 7-like [Vitis vinifera] gi|302141684|emb|CBI18887.3| unnamed protein product [Vitis vinifera]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 142/211 (67%), Positives = 173/211 (81%), Gaps = 1/211 (0%)

Query: 14  SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP 73
           S T GK IRCRAA+SR  G+PLVMEE+ V PP AGEVRI+I+CTSLCHSD+TFW+  +PP
Sbjct: 15  SQTRGKPIRCRAAVSRKAGEPLVMEEVMVAPPMAGEVRIRIICTSLCHSDLTFWKLKEPP 74

Query: 74  MAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNK 133
            A FPRILGHEAVGVVESVG  V EV EGD VLP+F  DCGEC DC+S KSN+CSKF  +
Sbjct: 75  -ACFPRILGHEAVGVVESVGENVTEVAEGDTVLPIFIPDCGECMDCRSEKSNLCSKFPFE 133

Query: 134 DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV 193
            +  +PR  ++RF DLKGEV+++ LNVSSF+EYTVVD+ ++ KI+P IP + ACL SCGV
Sbjct: 134 ISPWLPRHKSSRFTDLKGEVLYHFLNVSSFSEYTVVDIDNITKISPAIPPNKACLFSCGV 193

Query: 194 STGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
           STG+GAAW+ A+VE+GSTV IFGLGA+GL+V
Sbjct: 194 STGVGAAWRTAKVEKGSTVVIFGLGAIGLAV 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219884|ref|NP_173660.1| alcohol dehydrogenase-like 2 [Arabidopsis thaliana] gi|75337342|sp|Q9SK87.1|ADHL2_ARATH RecName: Full=Alcohol dehydrogenase-like 2 gi|6587844|gb|AAF18533.1|AC006551_19 Very similar to alcohol dehydrogenase [Arabidopsis thaliana] gi|50253432|gb|AAT71918.1| At1g22440 [Arabidopsis thaliana] gi|51972064|gb|AAU15136.1| At1g22440 [Arabidopsis thaliana] gi|332192121|gb|AEE30242.1| alcohol dehydrogenase-like 2 [Arabidopsis thaliana]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 144/221 (65%), Positives = 177/221 (80%), Gaps = 1/221 (0%)

Query: 12  NASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ 71
            AS T GK IRC+AAI R  G+PLV+EEI+VDPP+A EVRIKILCTSLCH+DVTFW+   
Sbjct: 3   KASITEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDS 62

Query: 72  PPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFV 131
            P+A FPRILGHEAVGVVES+G  V+  ++GD+VLPVF   C EC++C SPKSN C+K+ 
Sbjct: 63  GPLARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYT 122

Query: 132 NKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           N    +  R G T+RF+D +GE IH+ + VSSFTEYTVVD+ H+VKI+P+IP+DIA LLS
Sbjct: 123 NDYLSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLS 182

Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLK 231
           C V+TGLGAAWKVA+VEEGSTV IFGLGAVGL+V   + L+
Sbjct: 183 CSVATGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLR 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459818|ref|XP_002285916.1| PREDICTED: alcohol dehydrogenase-like 7 [Vitis vinifera] gi|302141683|emb|CBI18886.3| unnamed protein product [Vitis vinifera]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/212 (66%), Positives = 169/212 (79%), Gaps = 1/212 (0%)

Query: 13  ASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP 72
           A  T GK IRCRAA+    G+PLVMEE+ V PP AGEVRI+I+CTSLC+SD+TFW+   P
Sbjct: 3   AGETRGKPIRCRAAVCWKAGEPLVMEEVMVAPPLAGEVRIRIICTSLCYSDITFWKLKDP 62

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
           P   FPRILGHEAVGVVESVG  V EV EGD+VLP+F  DCGEC DC+S KSN+CSKF  
Sbjct: 63  P-GCFPRILGHEAVGVVESVGENVSEVTEGDIVLPIFLPDCGECTDCRSEKSNLCSKFPF 121

Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
           K +  MPR  ++RF DLKGEV+++ L VSSF+EYTVVD+ ++ KI P+IP + ACL SCG
Sbjct: 122 KVSPWMPRYESSRFTDLKGEVLYHFLFVSSFSEYTVVDIANITKIDPNIPPNRACLFSCG 181

Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
           VSTG+GAAWK A VE+GSTVAIFGLGA+GL+V
Sbjct: 182 VSTGVGAAWKTANVEKGSTVAIFGLGAIGLAV 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453073|ref|XP_004144283.1| PREDICTED: alcohol dehydrogenase-like 7-like [Cucumis sativus]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 137/217 (63%), Positives = 171/217 (78%), Gaps = 1/217 (0%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           M+N ++ +T  + IRCRAA+ R PG+PLV+EEI V PP   EVRI+I+CTSLCHSD+TFW
Sbjct: 1   MENNSSPATGLQPIRCRAAVCRKPGEPLVIEEIIVAPPMPREVRIRIICTSLCHSDLTFW 60

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           +   PP  +FPRILGHEA+GVVESVG  V EV+EGD V+P F  DCGEC+DC S KSN+C
Sbjct: 61  KLKDPP-GIFPRILGHEAIGVVESVGKDVHEVKEGDTVIPTFMADCGECKDCLSNKSNLC 119

Query: 128 SKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIAC 187
           +KF    +   PR GT+RF DL GEVIH++L VSSFTEYTVVD+ +V K+ P IP + AC
Sbjct: 120 TKFPFSVSPGTPRYGTSRFTDLNGEVIHHLLFVSSFTEYTVVDIVNVTKVDPAIPPNRAC 179

Query: 188 LLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
           LLSCGV+TG+GA W+ A VE+GSTVAIFGLG++GL+V
Sbjct: 180 LLSCGVTTGVGATWRTANVEKGSTVAIFGLGSIGLAV 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845264|ref|XP_002890513.1| hypothetical protein ARALYDRAFT_472482 [Arabidopsis lyrata subsp. lyrata] gi|297336355|gb|EFH66772.1| hypothetical protein ARALYDRAFT_472482 [Arabidopsis lyrata subsp. lyrata]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/218 (63%), Positives = 170/218 (77%), Gaps = 1/218 (0%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           MDN + SS  GK IRC+AAI R  G+ LV+E+I VDPP+  EVRIKILCTSLCH+D+TFW
Sbjct: 1   MDNTSFSSNEGKPIRCKAAICRKAGEALVIEDIHVDPPQPYEVRIKILCTSLCHTDLTFW 60

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           +    P++ FPRILGHEAVGVVES+G  V   ++GD+VLPVF   C EC+DCKS K+N C
Sbjct: 61  KLDFGPISRFPRILGHEAVGVVESIGENVVGFKQGDVVLPVFHPYCEECKDCKSSKTNWC 120

Query: 128 SKFVNKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
            ++      +  R G  +RF+D  GEVIH+ L VSSF+EYTVVD+ H+VKI+P+IP+D A
Sbjct: 121 ERYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKA 180

Query: 187 CLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
            LLSCGVSTG+GAAWKVA VEEGSTVA+FGLGAVGL+V
Sbjct: 181 ALLSCGVSTGIGAAWKVANVEEGSTVAVFGLGAVGLAV 218

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219882|ref|NP_173659.1| alcohol dehydrogenase-like 1 [Arabidopsis thaliana] gi|79318344|ref|NP_001031079.1| alcohol dehydrogenase-like 1 [Arabidopsis thaliana] gi|75337341|sp|Q9SK86.1|ADHL1_ARATH RecName: Full=Alcohol dehydrogenase-like 1 gi|6587845|gb|AAF18534.1|AC006551_20 Very similar to alcohol dehydrogenase [Arabidopsis thaliana] gi|20260430|gb|AAM13113.1| putative alcohol dehydrogenase [Arabidopsis thaliana] gi|22136286|gb|AAM91221.1| putative alcohol dehydrogenase [Arabidopsis thaliana] gi|332192119|gb|AEE30240.1| alcohol dehydrogenase-like 1 [Arabidopsis thaliana] gi|332192120|gb|AEE30241.1| alcohol dehydrogenase-like 1 [Arabidopsis thaliana]

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 137/218 (62%), Positives = 170/218 (77%), Gaps = 1/218 (0%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           MD    SS  GK I C+AAI R  G+ LV+E+I VDPP+A EVRIKILCTSLCH+D+TFW
Sbjct: 1   MDKTFFSSNEGKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFW 60

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           + +  P++ FPRILGHEAVGVVES+G  V+  ++GD+VLPVF   C EC+DCKS K+N C
Sbjct: 61  KLSFGPISRFPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWC 120

Query: 128 SKFVNKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
            ++      +  R G  +RF+D  GEVIH+ L VSSF+EYTVVD+ H+VKI+P+IP+D A
Sbjct: 121 DRYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKA 180

Query: 187 CLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
            LLSCGVSTG+GAAWKVA VEEGST+AIFGLGAVGL+V
Sbjct: 181 ALLSCGVSTGIGAAWKVANVEEGSTIAIFGLGAVGLAV 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2009512	386	AT1G22440 [Arabidopsis thalian	0.855	0.567	0.595	3.7e-64
TAIR|locus:2157627	390	AT5G42250 [Arabidopsis thalian	0.843	0.553	0.574	2.4e-60
TAIR|locus:2009522	388	AT1G22430 [Arabidopsis thalian	0.847	0.559	0.568	6.4e-60
TAIR|locus:2120663	389	AT4G22110 [Arabidopsis thalian	0.808	0.532	0.596	8.1e-60
TAIR|locus:2025237	379	ADH1 "alcohol dehydrogenase 1"	0.800	0.540	0.504	4.1e-49
TAIR|locus:2035619	394	AT1G32780 [Arabidopsis thalian	0.824	0.535	0.45	4.4e-45
ZFIN|ZDB-GENE-040426-1165	380	zgc:63568 "zgc:63568" [Danio r	0.832	0.560	0.441	4.4e-45
ZFIN|ZDB-GENE-040426-1910	378	zgc:77938 "zgc:77938" [Danio r	0.820	0.555	0.450	4.4e-45
MGI|MGI:87929	374	Adh5 "alcohol dehydrogenase 5	0.808	0.553	0.469	2.4e-44
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.816	0.555	0.440	6.4e-44

TAIR|locus:2009512 AT1G22440 [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 131/220 (59%), Positives = 160/220 (72%)

Query:    13 ASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP 72
             AS T GK IRC+AAI R  G+PLV+EEI+VDPP+A EVRIKILCTSLCH+DVTFW+    
Sbjct:     4 ASITEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSG 63

Query:    73 PMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
             P+A FPRIL                     D+VLPVF   C EC++C SPKSN C+K+ N
Sbjct:    64 PLARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTN 123

Query:   133 KDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
                 +  R G T+RF+D +GE IH+ + VSSFTEYTVVD+ H+VKI+P+IP+DIA LLSC
Sbjct:   124 DYLSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSC 183

Query:   192 GVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLK 231
              V+TGLGAAWKVA+VEEGSTV IFGLGAVGL+V   + L+
Sbjct:   184 SVATGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLR 223

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2157627 AT5G42250 [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 127/221 (57%), Positives = 156/221 (70%)

Query:     8 MDNKNASS---TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDV 64
             M+N N+SS   ++ K IRC+AA+SR  G+PLVMEEI V PP+  EVRI+I+CT+LCHSDV
Sbjct:     1 MENGNSSSDNKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDV 60

Query:    65 TFWRSTQPPMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKS 124
             TFW+   PP A FPRIL                     D VLP F  DCG+C DCKS KS
Sbjct:    61 TFWKLQVPP-ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKS 119

Query:   125 NICSKFVNKDNQSMPR-DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL 183
             N+CSKF  K +  MPR D ++RF DL GE + + LNVSSF+EYTV+DV +VVKI   IP 
Sbjct:   120 NLCSKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPP 179

Query:   184 DIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
               ACLLSCGVSTG+GAAW+ A+VE+GSTV IFGLG++GL+V
Sbjct:   180 SRACLLSCGVSTGVGAAWETAKVEKGSTVVIFGLGSIGLAV 220

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2009522 AT1G22430 [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 124/218 (56%), Positives = 153/218 (70%)

Query:     8 MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
             MD    SS  GK I C+AAI R  G+ LV+E+I VDPP+A EVRIKILCTSLCH+D+TFW
Sbjct:     1 MDKTFFSSNEGKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFW 60

Query:    68 RSTQPPMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNIC 127
             + +  P++ FPRIL                     D+VLPVF   C EC+DCKS K+N C
Sbjct:    61 KLSFGPISRFPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWC 120

Query:   128 SKFVNKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
              ++      +  R G  +RF+D  GEVIH+ L VSSF+EYTVVD+ H+VKI+P+IP+D A
Sbjct:   121 DRYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKA 180

Query:   187 CLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
              LLSCGVSTG+GAAWKVA VEEGST+AIFGLGAVGL+V
Sbjct:   181 ALLSCGVSTGIGAAWKVANVEEGSTIAIFGLGAVGLAV 218

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2120663 AT4G22110 [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 124/208 (59%), Positives = 152/208 (73%)

Query:    18 GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF 77
             GK IRC+AA+SR PG+ LV+EEI VDPP+A EVRIKI+CTSLCH+DV+F +    P+A F
Sbjct:    12 GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARF 71

Query:    78 PRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS 137
             PRIL                     D+VLPVF   C ECRDCKS KSN C++F +    +
Sbjct:    72 PRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSN 131

Query:   138 MPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
               R G T+RF+D  GE I++ L VSSF+EYTVVD+ H+VKI+PDIP+D A LLSCGVSTG
Sbjct:   132 TRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTG 191

Query:   197 LGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
             +GAAWKVA VE+GSTVA+FGLGAVGL+V
Sbjct:   192 IGAAWKVANVEKGSTVAVFGLGAVGLAV 219

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 106/210 (50%), Positives = 136/210 (64%)

Query:    15 STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QPP 73
             ST G+IIRC+AA++   GKPLV+EE+EV PP+  EVRIKIL TSLCH+DV FW +  Q P
Sbjct:     2 STTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTP 61

Query:    74 MAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKF-VN 132
             +  FPRI                      D VLP+F G+CGECR C S +SN+C    +N
Sbjct:    62 L--FPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRIN 119

Query:   133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
              +   M  DG +RF  + G+ I++ L  S+F+EYTVV    V KI PD PLD  C++SCG
Sbjct:   120 TERGGMIHDGESRF-SINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCG 178

Query:   193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGL 222
             +STGLGA   VA+ ++G +VAIFGLGAVGL
Sbjct:   179 LSTGLGATLNVAKPKKGQSVAIFGLGAVGL 208

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045333 "cellular respiration" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0001666 "response to hypoxia" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS;IMP

TAIR|locus:2035619 AT1G32780 [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 99/220 (45%), Positives = 135/220 (61%)

Query:    14 SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP 73
             + T GK+I C+AA+   P  PLV++EI VDPP+  EVR+KIL +S+CH+D+  W  T   
Sbjct:     2 AETQGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEA 61

Query:    74 MAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKF-VN 132
                FPRIL                     D V+P F G+CGEC+ CK  +SN+C ++ V+
Sbjct:    62 ERAFPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVD 121

Query:   133 KDNQSMPRDGTNRF-----RD---LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLD 184
                + M  DG  RF     +D    + + I++ LN S+FTEYTV+D   VVKI P+ PL 
Sbjct:   122 PMKRVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLK 181

Query:   185 IACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
                LLSCGVSTG+GAAW +A V+EG + A+FGLG+VGL+V
Sbjct:   182 QMSLLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAV 221

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-040426-1165 zgc:63568 "zgc:63568" [Danio rerio (taxid:7955)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 95/215 (44%), Positives = 130/215 (60%)

Query:    13 ASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTF-WRSTQ 71
             A  T GK+I+C+ A++  PGKPL +E++EV PPKA EVRIKI  + +CHSD  + +   +
Sbjct:     3 AMETEGKVIKCKVAVAWEPGKPLSIEKVEVAPPKAHEVRIKIAASGVCHSDWAYLYDIAK 62

Query:    72 PPMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFV 131
                  FP +L                     D V+P+F   CG+C  C+SPK+N+C+K  
Sbjct:    63 MKPRPFPLVLGHEGAGVVESVGPGVTKVSIGDKVIPLFLPQCGQCERCQSPKTNLCTKNW 122

Query:   132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
              K  Q +  DGT+R    K + +H  + +S+F+EYTVV   +V KI PD PLD  CLL C
Sbjct:   123 EKTQQGVLADGTSRIT-CKNQQVHQFIGISTFSEYTVVPEDNVTKIHPDAPLDRVCLLGC 181

Query:   192 GVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
             GVSTG GAA    +VE GST A+FGLGAVGL+ ++
Sbjct:   182 GVSTGYGAAVNTGKVESGSTCAVFGLGAVGLAAVM 216

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1910 zgc:77938 "zgc:77938" [Danio rerio (taxid:7955)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 96/213 (45%), Positives = 129/213 (60%)

Query:    16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM- 74
             T GK+I+C+AA++  PGKPL +E++EV PPKA EVRIK++ + +CH+D TF       M 
Sbjct:     3 TEGKVIKCKAAVAWEPGKPLSIEDVEVAPPKAHEVRIKMVASGICHTDWTFLHEVGKTMN 62

Query:    75 -AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNK 133
                FP +L                     D V+P+    CG+C  C SPK+N+CSK   K
Sbjct:    63 PQPFPVVLGHEGAGVVESVGPGVTKMAKGDKVIPLVVPQCGQCERCLSPKTNLCSKNWEK 122

Query:   134 DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV 193
               Q +  DGT+R    K + +H  + +S+F+EYTVV   +V KI PD PLD  CLL CGV
Sbjct:   123 TQQCLLADGTSRIT-CKNQQVHQFIAISTFSEYTVVPEDNVTKIHPDAPLDRVCLLGCGV 181

Query:   194 STGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
             STG GAA    +VE GST A+FGLGAVGL+ ++
Sbjct:   182 STGYGAAVNTGKVESGSTCAVFGLGAVGLAAVM 214

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:87929 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Mus musculus (taxid:10090)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 99/211 (46%), Positives = 130/211 (61%)

Query:    17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
             A ++IRC+AA++   GKPL +EEIEV PPKA EVRIKIL T++CH+D  +  S   P   
Sbjct:     2 ANQVIRCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKILATAVCHTDA-YTLSGADPEGC 60

Query:    77 FPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKF-VNKDN 135
             FP IL                     D V+P++   CGEC+ C +PK+N+C K  V +  
Sbjct:    61 FPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 120

Query:   136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
               MP DGT+RF   KG+ + + +  S+F+EYTVV    V KI P  PLD  CLL CG+ST
Sbjct:   121 GLMP-DGTSRFT-CKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGIST 178

Query:   196 GLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
             G GAA   A+VE GST A+FGLG VGL+V++
Sbjct:   179 GYGAAVNTAKVEPGSTCAVFGLGGVGLAVIM 209

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IMP

GO:0003016 "respiratory system process" evidence=IMP

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISO;IDA

GO:0005504 "fatty acid binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006068 "ethanol catabolic process" evidence=ISO

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IMP

GO:0018467 "formaldehyde dehydrogenase activity" evidence=ISO

GO:0032496 "response to lipopolysaccharide" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045777 "positive regulation of blood pressure" evidence=IMP

GO:0046294 "formaldehyde catabolic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IMP

GO:0051775 "response to redox state" evidence=ISO

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=ISO;IMP;IDA

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 93/211 (44%), Positives = 128/211 (60%)

Query:    16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
             T GK+I+C+AA++   GKPL +EE+EV PPKA EVR+KI  T +CH+D  +  S   P  
Sbjct:     3 TTGKVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDA-YTLSGSDPEG 61

Query:    76 VFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
             +FP IL                     D V+P++   CGEC+ CK+PK+N+C K      
Sbjct:    62 LFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQG 121

Query:   136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
             Q +  D T+RF   KG+ + + +  S+F+EYTVV    + K+    PLD  CLL CG+ST
Sbjct:   122 QGLMPDNTSRFT-CKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGIST 180

Query:   196 GLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
             G GAA   A+VE GST A+FGLGAVGL+V++
Sbjct:   181 GYGAAINTAKVEAGSTCAVFGLGAVGLAVVM 211

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015186001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (387 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036847001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (485 aa)						•			0.899
	GSVIVG00035907001	SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (215 aa)						•			0.899
	GSVIVG00034061001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (450 aa)						•			0.899
	GSVIVG00028844001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (538 aa)						•			0.899
	GSVIVG00024617001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (485 aa)						•			0.899
	GSVIVG00024065001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (607 aa)						•			0.899
	GSVIVG00020768001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (531 aa)						•			0.899
	GSVIVG00019283001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (549 aa)						•			0.899
	GSVIVG00016425001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (362 aa)						•			0.899
	GSVIVG00016121001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (511 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	1e-117
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-96
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	3e-94
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	2e-88
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	7e-87
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	8e-79
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	4e-76
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	5e-73
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	4e-70
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	1e-67
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	7e-60
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	3e-56
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	1e-53
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-39
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	2e-39
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	7e-37
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	2e-35
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	4e-34
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	6e-33
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	6e-32
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	2e-31
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	2e-31
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	1e-30
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	4e-28
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	5e-28
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	1e-26
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	5e-26
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	9e-26
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	2e-25
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	3e-25
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	5e-25
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	6e-25
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	2e-24
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-23
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	1e-23
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-23
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	2e-23
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	2e-22
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	2e-22
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	2e-21
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	4e-20
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	4e-20
cd05281	341	cd05281, TDH, Threonine dehydrogenase	5e-20
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	1e-19
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	3e-19
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	4e-19
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	5e-19
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	5e-19
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	1e-17
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	2e-17
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	2e-17
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	2e-17
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	6e-17
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	1e-15
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	5e-15
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-14
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	7e-14
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	8e-14
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	2e-13
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	3e-13
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	4e-13
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	1e-12
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	3e-12
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	3e-12
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	6e-12
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	6e-12
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	1e-11
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	1e-10
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	1e-10
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	2e-10
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	2e-10
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	4e-10
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	4e-10
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	4e-10
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	1e-09
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	2e-09
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	2e-09
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	5e-09
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	8e-09
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	6e-08
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	1e-07
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	2e-07
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	2e-07
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	4e-07
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	4e-07
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	8e-07
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	1e-06
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	2e-06
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	2e-06
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	2e-06
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	5e-06
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	7e-06
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	3e-05
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	2e-04
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	3e-04
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	3e-04
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	7e-04
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	0.001
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	0.001
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	0.002
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	0.002
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	0.003

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  339 bits (871), Expect = e-117
 Identities = 125/205 (60%), Positives = 153/205 (74%), Gaps = 3/205 (1%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           I C+AA++   GKPLV+EE+EV PP+A EVRIKIL TSLCH+DV FW +      +FPRI
Sbjct: 1   ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQT-PLFPRI 59

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-VNKDNQSMP 139
           LGHEA G+VESVG GV +++ GD VLPVF G+C ECR CKS KSN+C    +N D   M 
Sbjct: 60  LGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMI 119

Query: 140 RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGA 199
            DG +RF    G+ I++ +  S+F+EYTVV V  V KI P+ PLD  CLLSCGVSTGLGA
Sbjct: 120 NDGKSRFSI-NGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGA 178

Query: 200 AWKVAEVEEGSTVAIFGLGAVGLSV 224
           AW VA+V++GSTVAIFGLGAVGL+V
Sbjct: 179 AWNVAKVKKGSTVAIFGLGAVGLAV 203

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  287 bits (736), Expect = 1e-96
 Identities = 113/206 (54%), Positives = 149/206 (72%), Gaps = 4/206 (1%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           I+C+AA++   GKPLV+EEIEV PPKA EVRIK+L TS+CH+D+      +    +FP I
Sbjct: 1   IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKAT--LFPVI 58

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           LGHE  G+VESVG GV  ++ GD V+P+F G CGEC +C+S K+N+C K+   ++  MP 
Sbjct: 59  LGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMP- 117

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAA 200
           DGT+RF   KG+ I++ L  S+F++YTVVD  +V KI P  PL+  CLL CG STG GAA
Sbjct: 118 DGTSRF-TCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAA 176

Query: 201 WKVAEVEEGSTVAIFGLGAVGLSVLI 226
           W  A+VE GSTVA+FGLGAVGLS ++
Sbjct: 177 WNTAKVEPGSTVAVFGLGAVGLSAIM 202

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  281 bits (720), Expect = 3e-94
 Identities = 121/214 (56%), Positives = 155/214 (72%), Gaps = 2/214 (0%)

Query: 13  ASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP 72
           AS T GK+I C+AA++  PG+PLVMEEI VDPP+  EVRIKIL TS+CH+D++ W+    
Sbjct: 1   ASETQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENE 60

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-V 131
               +PRILGHEA G+VESVG GVE+++ GD V+P+F G+CG+CR CK  K+N+C  + V
Sbjct: 61  AQRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRV 120

Query: 132 NKDNQSMPRDGTNRFRDLK-GEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           +     M  DG  RF     G+ I++ LN S+FTEYTV+D   VVKI P+ PL    LLS
Sbjct: 121 DPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLS 180

Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
           CGVSTG+GAAW  A V+ GS+VAIFGLGAVGL+V
Sbjct: 181 CGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAV 214

Length = 381

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  266 bits (682), Expect = 2e-88
 Identities = 110/205 (53%), Positives = 143/205 (69%), Gaps = 2/205 (0%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           I C+AA++   GKPL +EE+EV PPKAGEVRIKIL T +CH+D  +  S   P  +FP I
Sbjct: 1   ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDA-YTLSGADPEGLFPVI 59

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           LGHE  G+VESVG GV  V+ GD V+P++  +CGEC+ CKS K+N+C K      + +  
Sbjct: 60  LGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMP 119

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAA 200
           DGT+RF   KG+ I++ +  S+F+EYTVV    V KI P+ PLD  CLL CGV+TG GA 
Sbjct: 120 DGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAV 178

Query: 201 WKVAEVEEGSTVAIFGLGAVGLSVL 225
              A+VE GSTVA+FGLGAVGL+V+
Sbjct: 179 LNTAKVEPGSTVAVFGLGAVGLAVI 203

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  262 bits (672), Expect = 7e-87
 Identities = 110/211 (52%), Positives = 138/211 (65%), Gaps = 3/211 (1%)

Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           TAGK+I+C+AA+   P KP  +EEIEV PPKA EVRIKI+ T +C SD            
Sbjct: 1   TAGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV--T 58

Query: 76  VFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
            FP ILGHEA G+VESVG GV  V+ GD V+P+F   CG+CR C +P+SN+C K      
Sbjct: 59  PFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKP 118

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
           Q + +DGT+RF   KG+ IH+ L  S+F+EYTVVD   V KI    PL+  CL+ CG ST
Sbjct: 119 QGLMQDGTSRF-TCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFST 177

Query: 196 GLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           G GAA   A+V  GST A+FGLG VGLS ++
Sbjct: 178 GYGAAVNTAKVTPGSTCAVFGLGGVGLSAIM 208

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  242 bits (618), Expect = 8e-79
 Identities = 111/212 (52%), Positives = 142/212 (66%), Gaps = 5/212 (2%)

Query: 13  ASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP 72
           +S +   +I CRAA++   G+ LVMEE+EV PP+  E+RIK++ TSLC SD++ W S   
Sbjct: 3   SSISQPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ-- 60

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
             A+FPRI GHEA G+VES+G GV E  +GD VL VF G+CG CR C S KSN+C     
Sbjct: 61  --ALFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGL 118

Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
           +    M  D   RF  +KG+ +++   VSSF+EYTVV     VK+ P  PL   CLLSCG
Sbjct: 119 ERKGVMHSDQKTRF-SIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCG 177

Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
           V+ GLGAAW VA+V +GS+V IFGLG VGLSV
Sbjct: 178 VAAGLGAAWNVADVSKGSSVVIFGLGTVGLSV 209

Length = 378

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  235 bits (600), Expect = 4e-76
 Identities = 102/204 (50%), Positives = 135/204 (66%), Gaps = 3/204 (1%)

Query: 23  CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILG 82
           C+AA+    GKPL +EEIEV PPKAGEVRIK++ T +CH+D+       P     P ILG
Sbjct: 1   CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP--TPLPVILG 58

Query: 83  HEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           HE  G+VES+G GV  ++ GD V+P+F   CG+C+ C +P+ N+CSK    + + +  DG
Sbjct: 59  HEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDG 118

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWK 202
           T+RF   KG+ IH+ L  S+F EYTVV    + KI PD PL+  CL+ CG STG GAA  
Sbjct: 119 TSRFT-CKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVN 177

Query: 203 VAEVEEGSTVAIFGLGAVGLSVLI 226
            A+V  GST A+FGLG VGLSV++
Sbjct: 178 TAKVTPGSTCAVFGLGGVGLSVIM 201

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  226 bits (579), Expect = 5e-73
 Identities = 95/205 (46%), Positives = 131/205 (63%), Gaps = 3/205 (1%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           ++ RAA++R  GKPL +EE+++DPP+AGEV ++I  T +CH+D     S   P   FP +
Sbjct: 1   MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHT-LSGDDPEG-FPAV 58

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           LGHE  G+VE+VG GV  V+ GD V+ +F  +CG+C+ C S K N+C        +    
Sbjct: 59  LGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMP 118

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAA 200
           DGT R     G  +++ L  S+F EYTVV    +VKI PD PL+ ACLL CGV+TG+GA 
Sbjct: 119 DGTTRLSG-NGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAV 177

Query: 201 WKVAEVEEGSTVAIFGLGAVGLSVL 225
              A+VE G TVA+FGLG VGL+ +
Sbjct: 178 VNTAKVEPGDTVAVFGLGGVGLAAI 202

Length = 366

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  219 bits (560), Expect = 4e-70
 Identities = 86/202 (42%), Positives = 109/202 (53%), Gaps = 4/202 (1%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           RAA+    GKPL +EE+E+D P  GEV ++I    LCHSD+       P     P +LGH
Sbjct: 2   RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPAP--LPAVLGH 59

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E  GVVE VG GV  V+ GD V+  +   CG CR C   + N+C          +P    
Sbjct: 60  EGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLP--DG 117

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKV 203
            R     GE +  +  + +F EYTVV    VVKI  DIPLD A LL CGV+TG+GA    
Sbjct: 118 TRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNT 177

Query: 204 AEVEEGSTVAIFGLGAVGLSVL 225
           A V  G TVA+ G G VGL+ +
Sbjct: 178 ARVRPGDTVAVIGCGGVGLNAI 199

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  213 bits (543), Expect = 1e-67
 Identities = 95/205 (46%), Positives = 136/205 (66%), Gaps = 2/205 (0%)

Query: 22  RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           + RAA++   G+PL +EE++V+ P+ GEV ++I+ T +CH+D  F  S   P  VFP IL
Sbjct: 1   KSRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDA-FTLSGADPEGVFPVIL 59

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           GHE  G+VE+VG GV  V+ GD V+P++  +CGEC+ C S K+N+C        + +  D
Sbjct: 60  GHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPD 119

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAW 201
           GT+RF    G+ I++ +  S+F+EYTVV    + KI P  PL+  CLL CGV+TG+GA  
Sbjct: 120 GTSRF-SKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVL 178

Query: 202 KVAEVEEGSTVAIFGLGAVGLSVLI 226
             A+VEEG TVA+FGLG +GLSV+ 
Sbjct: 179 NTAKVEEGDTVAVFGLGGIGLSVIQ 203

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  193 bits (492), Expect = 7e-60
 Identities = 88/202 (43%), Positives = 119/202 (58%), Gaps = 2/202 (0%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+   PG+P  +EEIE+D PKAGEV +K++ + LCHSD     +   PM  +P + GH
Sbjct: 3   KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSDEHL-VTGDLPMPRYPILGGH 61

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E  GVV  VG GV  V+ GD V+  F   CG CR C +   N+C         S   DGT
Sbjct: 62  EGAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISDGT 121

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKV 203
            RF    G+ +  +  + +F+EYTVV    VVKI  DIPLD ACL+ CGV TG G+A  +
Sbjct: 122 YRFH-ADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNI 180

Query: 204 AEVEEGSTVAIFGLGAVGLSVL 225
           A+V  G TV + G+G VG++ +
Sbjct: 181 ADVRPGDTVVVMGIGGVGINAV 202

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  183 bits (468), Expect = 3e-56
 Identities = 81/207 (39%), Positives = 116/207 (56%), Gaps = 6/207 (2%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           ++  AA+ R PG P V+E++E+D P+  EV ++I+ T +CH+D+   R    P    P +
Sbjct: 1   MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVV-RDGGLP-TPLPAV 58

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           LGHE  GVVE+VG  V  ++ GD V+  F   CGEC +C S     C  F    N S  R
Sbjct: 59  LGHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENF-FPLNFSGRR 116

Query: 141 -DGTNRFRDLKGEVIH-NVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLG 198
            DG+       G  +H +    SSF  Y VV   +VVK+  D+PL++   L CG+ TG G
Sbjct: 117 PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAG 176

Query: 199 AAWKVAEVEEGSTVAIFGLGAVGLSVL 225
           A   V +   GS++A+FG GAVGL+ +
Sbjct: 177 AVLNVLKPRPGSSIAVFGAGAVGLAAV 203

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  176 bits (449), Expect = 1e-53
 Identities = 94/214 (43%), Positives = 116/214 (54%), Gaps = 17/214 (7%)

Query: 24  RAAISRIPG--------KPLVMEEIEVDPPKAGEVRIKILCTSLCHSD---VTFWRSTQP 72
           RAA+ R  G        +PLV+EE+E+DPP  GEV +KI    LCHSD   +   R    
Sbjct: 2   RAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPRPL 61

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
           PMA     LGHEA GVV  VG GV ++  GD V+ VF   CG CR C   +  +C     
Sbjct: 62  PMA-----LGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAA 116

Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            +       G  R R   GE+ H+ L VS+F EY VV    VVKI  D+PL+IA L  C 
Sbjct: 117 ANGAGTLLSGGRRLRLRGGEINHH-LGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCA 175

Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           V TG+GA    A V  G +VA+ GLG VGLS L+
Sbjct: 176 VLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALL 209

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  138 bits (351), Expect = 2e-39
 Identities = 67/200 (33%), Positives = 90/200 (45%), Gaps = 25/200 (12%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+ +  G+PL +EE+ V  P  GEV IK+    +CH+D+   +   P     P I GH
Sbjct: 5   KAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPK-LPLIPGH 63

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E VG V  VG GV  ++ GD V +      CGEC  C+S   N+C    N+       DG
Sbjct: 64  EIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLC---PNQKITGYTTDG 120

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWK 202
                               + EY VV   +VVKI   + L  A  L C   T   A  K
Sbjct: 121 -------------------GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-K 160

Query: 203 VAEVEEGSTVAIFGLGAVGL 222
            A V+ G  VA+ G G +G 
Sbjct: 161 KANVKPGKWVAVVGAGGLGH 180

Length = 339

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  139 bits (353), Expect = 2e-39
 Identities = 71/208 (34%), Positives = 98/208 (47%), Gaps = 11/208 (5%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPR--IL 81
           +AA+ + P  PL +EEI V  PK GE+ I++    +CHSD+   +   P    FP   +L
Sbjct: 2   KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP----FPPPFVL 57

Query: 82  GHEAVGVVESVGGGVE---EVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-VNKDNQS 137
           GHE  G V  VG  VE    +  GD V+  F   CG+CR C   K N+C  F      + 
Sbjct: 58  GHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKG 117

Query: 138 MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGL 197
              DGT R   L G  ++         EY VV  T +  +   +    + +L C   T  
Sbjct: 118 TLYDGTTRLFRLDGGPVYMYSM-GGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAY 176

Query: 198 GAAWKVAEVEEGSTVAIFGLGAVGLSVL 225
           GA    A+V  G TVA+ G+G VG S +
Sbjct: 177 GALKHAADVRPGETVAVIGVGGVGSSAI 204

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  133 bits (335), Expect = 7e-37
 Identities = 72/202 (35%), Positives = 99/202 (49%), Gaps = 11/202 (5%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           R  I+R  G P+ +E I V  P  GEV + I    +CH+D+ +          FP +LGH
Sbjct: 3   RGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGINDE--FPFLLGH 60

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           EA GVVE+VG GV +V  GD V+  ++  CG+CR CK  +   C    N   +    DGT
Sbjct: 61  EAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGT 120

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKV 203
                     +   L + +F E T+V      K+ P      A LL CGV  GLGAA   
Sbjct: 121 E---------LSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNT 171

Query: 204 AEVEEGSTVAIFGLGAVGLSVL 225
             V+ G +VA+ G G VG + +
Sbjct: 172 GGVKRGDSVAVIGCGGVGDAAI 193

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  127 bits (320), Expect = 2e-35
 Identities = 51/178 (28%), Positives = 71/178 (39%), Gaps = 26/178 (14%)

Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPV 108
           EV +++    LC +D+   R   PP    P ILGHE  GVV  VG GV  V+ GD V+ +
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 109 FQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV 168
               CG C  C+                    DG                    F EY V
Sbjct: 61  PNLGCGTCELCRELCPGGGI-------LGEGLDGG-------------------FAEYVV 94

Query: 169 VDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           V   ++V +   + L+ A LL   ++T   A  +   ++ G TV + G G VGL    
Sbjct: 95  VPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQ 152

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  125 bits (316), Expect = 4e-34
 Identities = 61/205 (29%), Positives = 88/205 (42%), Gaps = 26/205 (12%)

Query: 23  CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
            +AA+    G KP  ++++ V  P  GEV +K+  + +CH+D+       P     P I 
Sbjct: 1   MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIG 60

Query: 82  GHEAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           GHE  GVV +VG GV  ++ GD V +      CG+C  C++    +C    N+ N     
Sbjct: 61  GHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLC---PNQKNSGYTV 117

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAA 200
           DGT                   F EY + D  +V  I   +  + A  L C   T   A 
Sbjct: 118 DGT-------------------FAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKAL 158

Query: 201 WKVAEVEEGSTVAIFGLGAVGLSVL 225
            K A ++ G  V I G G  GL  L
Sbjct: 159 -KKAGLKPGDWVVISGAGG-GLGHL 181

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  121 bits (307), Expect = 6e-33
 Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 44/214 (20%)

Query: 19  KIIRCRAAISRIPGKPLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           K + C         KP  +E +++  P   AGEV +++    +C SD+  +    P  A 
Sbjct: 2   KALVCE--------KPGRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNP-FAS 52

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLV--LPVFQGDCGECRDCKSPKSNICSKFVNKD 134
           +PRILGHE  G V  VG GV  ++ GD V   P     CGEC  C+  + N C       
Sbjct: 53  YPRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCCEN----- 105

Query: 135 NQSM--PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            Q +   RDG                    F EY VV    ++ +   + LD A L+   
Sbjct: 106 LQVLGVHRDGG-------------------FAEYIVVPADALL-VPEGLSLDQAALVEP- 144

Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           ++ G  A  + A V  G TV + G G +GL V+ 
Sbjct: 145 LAIGAHAVRR-AGVTAGDTVLVVGAGPIGLGVIQ 177

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  119 bits (300), Expect = 6e-32
 Identities = 69/199 (34%), Positives = 95/199 (47%), Gaps = 25/199 (12%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AAI   P KPL +EE+    P  GEV IK+    +C+ D+ FW+   P    +P ILGH
Sbjct: 2   KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRG-KYPLILGH 60

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E VG VE VG GVE  + GD V+  +   CG+C  C S + N+C    N+       DG 
Sbjct: 61  EIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLC---RNRAEYGEEVDGG 117

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKV 203
                              F EY  V    +VK+  ++  + A L +C V T + A  K 
Sbjct: 118 -------------------FAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KR 157

Query: 204 AEVEEGSTVAI-FGLGAVG 221
           A V++G TV +    G VG
Sbjct: 158 AGVKKGDTVLVTGAGGGVG 176

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  118 bits (297), Expect = 2e-31
 Identities = 61/192 (31%), Positives = 83/192 (43%), Gaps = 22/192 (11%)

Query: 32  GKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVES 91
              LV+EE+ V  P  GEV +K+    +CHSD+       P +   P  LGHE  G V  
Sbjct: 11  KGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVE 70

Query: 92  VGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKG 151
           VG GV   + GD V       CG C  C+  + N+C       NQ MP  G +       
Sbjct: 71  VGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC------LNQGMPGLGIDGG----- 119

Query: 152 EVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGST 211
                      F EY VV    +V +   +P   A + +  V T   A  +  EV+ G T
Sbjct: 120 -----------FAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGET 168

Query: 212 VAIFGLGAVGLS 223
           V + GLG +GL+
Sbjct: 169 VLVIGLGGLGLN 180

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  117 bits (296), Expect = 2e-31
 Identities = 63/199 (31%), Positives = 85/199 (42%), Gaps = 25/199 (12%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+    G PL  EE+ V  P  GEV IKI    +CH+D+            +P + GH
Sbjct: 1   KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGS-KYPLVPGH 59

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E VG V  VG GVE  + GD V +    G CG C  C+    N+C K VN    +    G
Sbjct: 60  EIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTT---QG 116

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWK 202
                               + EY V D  + V +   +PL  A  L C   T   +A +
Sbjct: 117 -------------------GYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVY-SALR 156

Query: 203 VAEVEEGSTVAIFGLGAVG 221
            A    G  VA+ G+G +G
Sbjct: 157 DAGPRPGERVAVLGIGGLG 175

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  116 bits (292), Expect = 1e-30
 Identities = 64/206 (31%), Positives = 88/206 (42%), Gaps = 26/206 (12%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           RAA+    G+PL + E+    P    V +++    +C SD   W+    P    P + GH
Sbjct: 2   RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQG-HDPDVTLPHVPGH 60

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E  GVV  VG  V   R GD V   F   CG C  C++  SN+C      ++Q  P    
Sbjct: 61  EFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVC------EHQVQP---- 110

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVD--VTHVVKITPDIPLDIACLLSCGVSTGLGAAW 201
                  G          SF EY  V     ++V++  D+    A  L C  +T   A  
Sbjct: 111 -------GFTHP-----GSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALV 158

Query: 202 KVAEVEEGSTVAIFGLGAVGLS-VLI 226
             A V+ G  VA+ G G VGLS V+I
Sbjct: 159 HQARVKPGEWVAVHGCGGVGLSAVMI 184

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score =  103 bits (258), Expect = 4e-28
 Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 23/131 (17%)

Query: 47  AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVL 106
            GEV +++    +C SD+  +R   PP+   P ILGHE  G+VE VG GV  ++ GD V+
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRGEPPPVK-LPLILGHEGAGIVEEVGPGVTGLKVGDRVV 59

Query: 107 PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEY 166
                 CG+C  C+  + N+C    N     +  DG                    F EY
Sbjct: 60  VYPLIPCGKCAACREGRENLCP---NGKFLGVHLDGG-------------------FAEY 97

Query: 167 TVVDVTHVVKI 177
            VV   ++V +
Sbjct: 98  VVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  109 bits (273), Expect = 5e-28
 Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 18/203 (8%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+  + G  + +EE     P  G+V I++  T +C SD+  +R  +P +     ILGH
Sbjct: 2   KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E VG V  V G V   + GD V+      CG CR C++ + N+C                
Sbjct: 62  EFVGEVVEV-GVVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCEN-------------- 106

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKV 203
                  G           F EY  V     +   PD   + A  L+  ++T      + 
Sbjct: 107 ---PGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAER 163

Query: 204 AEVEEGSTVAIFGLGAVGLSVLI 226
           A V  G TV + G G +GL  + 
Sbjct: 164 AAVRPGGTVVVVGAGPIGLLAIA 186

Length = 350

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  104 bits (263), Expect = 1e-26
 Identities = 64/206 (31%), Positives = 88/206 (42%), Gaps = 35/206 (16%)

Query: 24  RAAISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPR 79
           +A +   PG     PL + E+ V  P  GEV IK+    +C +D+       PP    P 
Sbjct: 2   KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPL 60

Query: 80  ILGHEAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNIC--SKFVNKDNQ 136
           I GHE VG VE+VG GV     GD V +P     CGECR C+S + N+C  ++F      
Sbjct: 61  IPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYT-- 118

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD-IPLDIACLLSCGVST 195
               DG                    + EY V D      I  D    + A LL  G+  
Sbjct: 119 ---VDG-------------------GYAEYMVADERFAYPIPEDYDDEEAAPLLCAGI-I 155

Query: 196 GLGAAWKVAEVEEGSTVAIFGLGAVG 221
           G   A K+A ++ G  + ++G GA  
Sbjct: 156 GYR-ALKLAGLKPGQRLGLYGFGASA 180

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  103 bits (259), Expect = 5e-26
 Identities = 54/191 (28%), Positives = 78/191 (40%), Gaps = 22/191 (11%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94
           + + E  V  P  GEV +++  + LC SD+ ++       A    I GHE  GVV +VG 
Sbjct: 12  VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGP 71

Query: 95  GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVI 154
           GV   R GD V+      CG CR+C+     +C+    +      RDG            
Sbjct: 72  GVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSK--RAAYGWNRDG------------ 117

Query: 155 HNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAI 214
                     EY +V    ++ +  D+      LL CG+ T    A +   V    TV +
Sbjct: 118 -------GHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTA-YHALRRVGVSGRDTVLV 169

Query: 215 FGLGAVGLSVL 225
            G G VGL  L
Sbjct: 170 VGAGPVGLGAL 180

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  102 bits (257), Expect = 9e-26
 Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 25/200 (12%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +A I     +   +EE+    P   EV IK+    LC+ D+   +   P M  +P ILGH
Sbjct: 2   KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMK-YPVILGH 60

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E VG VE VG  V+  + GD V  +     G C  C+S +   C                
Sbjct: 61  EVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC---------------- 104

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKV 203
            + R   GE +        F EY  V VT +VK+ P++  + A ++ C     +    + 
Sbjct: 105 -KNRLGYGEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGM-VYRGLRR 157

Query: 204 AEVEEGSTVAIFGL-GAVGL 222
           A V++G TV + G  G VG+
Sbjct: 158 AGVKKGETVLVTGAGGGVGI 177

Length = 334

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  101 bits (255), Expect = 2e-25
 Identities = 59/214 (27%), Positives = 91/214 (42%), Gaps = 29/214 (13%)

Query: 23  CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILG 82
            RAA+   PGKPL + E+ +   + G V +++    +C SDV      +P +   P ILG
Sbjct: 1   ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVP-LPIILG 59

Query: 83  HEAVGVVESVGGGV------EEVREGDLVL-PVFQGDCGECRDCKSPKSNIC--SKFVNK 133
           HE VG V ++GGGV      E ++ GD V   V    CG C  C       C   K    
Sbjct: 60  HEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAP-CGRCYRCLVGDPTKCENRKKY-- 116

Query: 134 DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-THVVKITPDIPLDIACLLSCG 192
                   G     D              + E+  +   T +V++  ++P ++A   +C 
Sbjct: 117 --------GHEASCDDPH-------LSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCA 161

Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           ++T L A  +   V  G TV + G G +GL  + 
Sbjct: 162 LATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVA 195

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  101 bits (253), Expect = 3e-25
 Identities = 61/205 (29%), Positives = 91/205 (44%), Gaps = 37/205 (18%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +A     PG PL + E +V  P  GEV IK+    +CHSD  F +    P   +PR+ GH
Sbjct: 2   KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDA-FVKEGAMPGLSYPRVPGH 60

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP--- 139
           E VG +++VG GV   + GD V +    G CG C  C+         FV+ +N  +    
Sbjct: 61  EVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRR------GDFVHCENGKVTGVT 114

Query: 140 RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI-PLDIACLLSCGVST--G 196
           RDG                    + EY +     + +I  D+   + A LL  GV+T   
Sbjct: 115 RDG-------------------GYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNA 155

Query: 197 LGAAWKVAEVEEGSTVAIFGLGAVG 221
           L    + +  + G  VA+ G+G +G
Sbjct: 156 L----RNSGAKPGDLVAVQGIGGLG 176

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  101 bits (253), Expect = 5e-25
 Identities = 58/193 (30%), Positives = 84/193 (43%), Gaps = 36/193 (18%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94
           L  E+I    P  GEV +K+    +C SD+  +  T       P +LGHE  G VE VG 
Sbjct: 12  LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA--YHPPLVLGHEFSGTVEEVGS 69

Query: 95  GVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDL 149
           GV+++  GD V     LP     CG+C  CK  + ++CS   N D     RDG       
Sbjct: 70  GVDDLAVGDRVAVNPLLP-----CGKCEYCKKGEYSLCS---NYDYIGSRRDG------- 114

Query: 150 KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEG 209
                       +F EY  V   +++KI   +  + A ++    +  L A    A +  G
Sbjct: 115 ------------AFAEYVSVPARNLIKIPDHVDYEEAAMIE-PAAVALHAVRL-AGITLG 160

Query: 210 STVAIFGLGAVGL 222
            TV + G G +GL
Sbjct: 161 DTVVVIGAGTIGL 173

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  100 bits (252), Expect = 6e-25
 Identities = 58/206 (28%), Positives = 82/206 (39%), Gaps = 33/206 (16%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW-----------RSTQPPMAVFPR 79
           PGKPL   EI+   P   EV +K+    +CHSD+  W            S        P 
Sbjct: 9   PGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPL 68

Query: 80  ILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP 139
           +LGHE VG V +VG    +V+ GD VL      CGEC  C +   N+C+K        + 
Sbjct: 69  VLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAK---GRALGIF 125

Query: 140 RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGA 199
           +DG                    + EY +V  +  +     +   +A  L+C   T   A
Sbjct: 126 QDG-------------------GYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSA 166

Query: 200 AWKVAEVEEGSTVAIFGLGAVGLSVL 225
             K+  +     V I G G +GL  L
Sbjct: 167 VKKLMPLVADEPVVIIGAGGLGLMAL 192

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 99.1 bits (248), Expect = 2e-24
 Identities = 60/210 (28%), Positives = 86/210 (40%), Gaps = 49/210 (23%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +A +   PG+ L +EE+ V  P   EV IK+    +C +D+  +       A  P + GH
Sbjct: 2   KALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEG--EFGAAPPLVPGH 58

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGD----CGECRDCKSPKSNICSKF----VNKDN 135
           E  GVV +VG  V   + GD V      D    CGEC  C+  + N+C       V    
Sbjct: 59  EFAGVVVAVGSKVTGFKVGDRVA----VDPNIYCGECFYCRRGRPNLCENLTAVGVT--- 111

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCG 192
               R+G                    F EY VV    V KI  ++  + A L   LSC 
Sbjct: 112 ----RNG-------------------GFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCA 148

Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGL 222
           V         +  ++ G +V +FG G +GL
Sbjct: 149 VH-----GLDLLGIKPGDSVLVFGAGPIGL 173

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 97.2 bits (243), Expect = 1e-23
 Identities = 54/194 (27%), Positives = 74/194 (38%), Gaps = 22/194 (11%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
               L     E  P    +V IKI    +CHSD+      +     +P + GHE VG+V 
Sbjct: 8   ASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDL-HTLRNEWGPTKYPLVPGHEIVGIVV 66

Query: 91  SVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDL 149
           +VG  V + + GD V +      CG C  CKS +   C K V   N   P DGT      
Sbjct: 67  AVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYP-DGT------ 119

Query: 150 KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGA--AWKVAEVE 207
                   +    + ++ VVD   V KI   +    A  L C   T            V 
Sbjct: 120 --------ITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNG---VG 168

Query: 208 EGSTVAIFGLGAVG 221
            G  V + G+G +G
Sbjct: 169 PGKRVGVVGIGGLG 182

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 97.3 bits (243), Expect = 1e-23
 Identities = 58/189 (30%), Positives = 81/189 (42%), Gaps = 28/189 (14%)

Query: 40  IEVDPPK---AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV 96
            EV  PK     +  +++  TS+C SD+  +R    P A    ILGHE VG V  VG  V
Sbjct: 15  EEVPDPKIQGPHDAIVRVTATSICGSDLHIYRG-GVPGAKHGMILGHEFVGEVVEVGSDV 73

Query: 97  EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHN 156
           + ++ GD V       CG CR C+      C   +         DG              
Sbjct: 74  KRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGG------------- 120

Query: 157 VLNVSSFTEYTVV---DVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVA 213
                   EY  V   D  ++ KI   +P + A +LS  + TG   A ++A ++ GSTVA
Sbjct: 121 ------QAEYVRVPYAD-MNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVA 172

Query: 214 IFGLGAVGL 222
           + G G VGL
Sbjct: 173 VIGAGPVGL 181

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 97.2 bits (243), Expect = 1e-23
 Identities = 59/204 (28%), Positives = 81/204 (39%), Gaps = 43/204 (21%)

Query: 38  EEIEVDPPKAGEVRIKILCTSLCHSDV-------TFWRSTQPPM---AVFPRILGHEAVG 87
           EE+   P K GEV+IK+    +C SD+        F  +   P       P  LGHE  G
Sbjct: 15  EEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSG 74

Query: 88  VVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFR 147
           VV  VG GV   + GD V+      CG C  CK    N+C         S+   G     
Sbjct: 75  VVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLC--------DSLGFIG----- 121

Query: 148 DLKGEVIHNVLNVSS--FTEYTVVDVTHVVKITPDIPLDIACL---LSCGVSTGLGAAWK 202
                     L      F EY VV   HV K+  ++PL+ A L   L+         A +
Sbjct: 122 ----------LGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWH-----AVR 166

Query: 203 VAEVEEGSTVAIFGLGAVGLSVLI 226
            +  + G T  + G G +GL  ++
Sbjct: 167 RSGFKPGDTALVLGAGPIGLLTIL 190

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 96.5 bits (241), Expect = 2e-23
 Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 31/204 (15%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF--PRIL 81
           +AA     GKPL +E++ V  P  G+V +++    +CHSD+         +  +  P  L
Sbjct: 2   KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLVL--PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP 139
           GHE  G VE VG GV+ ++EGD V+  P   G CG CR C+  + N C      +N   P
Sbjct: 62  GHENAGWVEEVGSGVDGLKEGDPVVVHPP-WG-CGTCRYCRRGEENYC------ENARFP 113

Query: 140 RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI-PLDIACLLSCGVSTGLG 198
             GT+                  F EY +V    +VK+   + P++ A L   G+ T   
Sbjct: 114 GIGTD----------------GGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGL-TAYH 156

Query: 199 AAWKVAEV-EEGSTVAIFGLGAVG 221
           A  K     + GSTV + G+G +G
Sbjct: 157 AVKKALPYLDPGSTVVVIGVGGLG 180

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 94.1 bits (235), Expect = 2e-22
 Identities = 66/203 (32%), Positives = 90/203 (44%), Gaps = 33/203 (16%)

Query: 37  MEEIEVDPPK---AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG 93
           +   EV  PK     +  +++  T++C SD+  +    P M     ILGHE +GVVE VG
Sbjct: 12  VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKK-GDILGHEFMGVVEEVG 70

Query: 94  GGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEV 153
             V  ++ GD V+  F   CGEC  CK    + C             D TN   ++    
Sbjct: 71  PEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQC-------------DNTNPSAEMAKLY 117

Query: 154 IHNV---LNVSSFT--------EYTVV---DVTHVVKITPDIPLDIACLLSCGVSTGLGA 199
            H        S  T        EY  V   DV    KI  D+  + A  LS  + TG  A
Sbjct: 118 GHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGP-FKIPDDLSDEKALFLSDILPTGYHA 176

Query: 200 AWKVAEVEEGSTVAIFGLGAVGL 222
           A ++AEV+ G TVA++G G VGL
Sbjct: 177 A-ELAEVKPGDTVAVWGCGPVGL 198

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 93.1 bits (232), Expect = 2e-22
 Identities = 53/192 (27%), Positives = 80/192 (41%), Gaps = 33/192 (17%)

Query: 37  MEEIEVDPPKAG--EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94
           +E  EV  P+ G  EV IK+    +C SD+  ++    P+   P +LGHE  G +  VG 
Sbjct: 14  VELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVE-TPVVLGHEFSGTIVEVGP 72

Query: 95  GVEEVREGDLVLPVFQGD-CGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEV 153
            VE  + GD V+       CG C  C+    N+C        Q    DG           
Sbjct: 73  DVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQ---ADG----------- 118

Query: 154 IHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGVSTGLGAAWKVAEVEEGS 210
                    F EY +V    + ++  ++ L+ A L   L+  V     A  + + +  G 
Sbjct: 119 --------GFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVH----AVAERSGIRPGD 166

Query: 211 TVAIFGLGAVGL 222
           TV +FG G +GL
Sbjct: 167 TVVVFGPGPIGL 178

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 91.1 bits (227), Expect = 2e-21
 Identities = 62/221 (28%), Positives = 90/221 (40%), Gaps = 44/221 (19%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+   P   + +EE+ V  P  GEV +K+    +C +DV   R     +   PRILGH
Sbjct: 2   KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLK-PPRILGH 59

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQG-DCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E  G +  VG GV   + GD V  V     CGEC  C     N+C  +    N     DG
Sbjct: 60  EIAGEIVEVGDGVTGFKVGDRVF-VAPHVPCGECHYCLRGNENMCPNYKKFGNLY---DG 115

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVV---DVTH--VVKITPDIPLDIACL---LSCGVS 194
                               F EY  V    V    V+K+  ++  + A L   L+C + 
Sbjct: 116 -------------------GFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCI- 155

Query: 195 TGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235
                A + A ++ G TV + G G +GL     +H    + 
Sbjct: 156 ----NAQRKAGIKPGDTVLVIGAGPIGL-----LHAMLAKA 187

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 87.6 bits (218), Expect = 4e-20
 Identities = 57/209 (27%), Positives = 87/209 (41%), Gaps = 57/209 (27%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW------RSTQPPMAVFPRILGHE 84
               L + ++ V  P   +V IK+  T++C +DV  +      + T P     P ++GHE
Sbjct: 9   AEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPV----PMVVGHE 64

Query: 85  AVGVVESVGGGVEEVREGDLVLPVFQGD----CGECRDCKSPKSNICSKF----VNKDNQ 136
            VG V  VG  V   + GD V     G+    CG CR+C++ + ++C       VN    
Sbjct: 65  FVGEVVEVGSEVTGFKVGDRV----SGEGHIVCGHCRNCRAGRRHLCRNTKGVGVN---- 116

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGV 193
              R G                   +F EY V+   +V KI  DIP D+A +       V
Sbjct: 117 ---RPG-------------------AFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFGNAV 154

Query: 194 STGLGAAWKVAEVEEGSTVAIFGLGAVGL 222
            T L  ++ +     G  V I G G +G+
Sbjct: 155 HTAL--SFDLV----GEDVLITGAGPIGI 177

Length = 341

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 87.5 bits (217), Expect = 4e-20
 Identities = 61/195 (31%), Positives = 86/195 (44%), Gaps = 33/195 (16%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94
           L +EE  +  P AGEVR+K+    +C SD   +R    P A +PR++GHE  GV+++VG 
Sbjct: 12  LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRG-HNPFAKYPRVIGHEFFGVIDAVGE 70

Query: 95  GVEEVREGDLVL--PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGE 152
           GV+  R G+ V   PV    CG C  C   K N+C+  V      + RDG          
Sbjct: 71  GVDAARIGERVAVDPVIS--CGHCYPCSIGKPNVCTSLV---VLGVHRDG---------- 115

Query: 153 VIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVE--EGS 210
                     F+EY VV   +  +I   I    A +    V     AA         E  
Sbjct: 116 ---------GFSEYAVVPAKNAHRIPDAIADQYAVM----VEPFTIAANVTGRTGPTEQD 162

Query: 211 TVAIFGLGAVGLSVL 225
              I+G G VGL+++
Sbjct: 163 VALIYGAGPVGLTIV 177

Length = 339

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 87.3 bits (217), Expect = 5e-20
 Identities = 60/203 (29%), Positives = 83/203 (40%), Gaps = 45/203 (22%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ-------PPMAVFPRILGH 83
            G    + E+ V  P  GEV IK+L  S+C +DV  +   +       PP+     I GH
Sbjct: 9   AGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPL-----IFGH 63

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC--SKFVNKDNQSMPRD 141
           E  G V  VG GV  V+ GD V       CG+C  C++   ++C  +K +  D      D
Sbjct: 64  EFAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVD-----TD 118

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAW 201
           G                    F EY VV   ++ K   DIP +IA      +   LG A 
Sbjct: 119 GC-------------------FAEYVVVPEENLWKNDKDIPPEIA-----SIQEPLGNAV 154

Query: 202 KVAEVEE--GSTVAIFGLGAVGL 222
                 +  G +V I G G +GL
Sbjct: 155 HTVLAGDVSGKSVLITGCGPIGL 177

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 86.2 bits (214), Expect = 1e-19
 Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 25/182 (13%)

Query: 44  PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGD 103
                +  +K+   ++C SD+  +R   P    F  +LGHE VG V  VG  V  ++ GD
Sbjct: 22  IQDPTDAIVKVTAAAICGSDLHIYRGHIPSTPGF--VLGHEFVGEVVEVGPEVRTLKVGD 79

Query: 104 LVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSF 163
            V+  F   CGEC  C+  +S  C+K        +   G     +L G          + 
Sbjct: 80  RVVSPFTIACGECFYCRRGQSGRCAK------GGLF--GYAGSPNLDG----------AQ 121

Query: 164 TEYTVV---DVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAV 220
            EY  V   D T ++K+   +  + A LL   + TG   A K A+V  G TVA+ G G V
Sbjct: 122 AEYVRVPFADGT-LLKLPDGLSDEAALLLGDILPTGYFGA-KRAQVRPGDTVAVIGCGPV 179

Query: 221 GL 222
           GL
Sbjct: 180 GL 181

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 85.1 bits (211), Expect = 3e-19
 Identities = 50/208 (24%), Positives = 74/208 (35%), Gaps = 50/208 (24%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A +    G P  L + E+    P  GEV +++    +   DV   +   PP+   P I 
Sbjct: 2   KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           G EA GVV +VG GV   + GD V                                + RD
Sbjct: 62  GSEAAGVVVAVGSGVTGFKVGDRVAA---------------------------LGGVGRD 94

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAW 201
           G                    + EY VV    +V +   +  + A  L     T   A +
Sbjct: 95  G-------------------GYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALF 135

Query: 202 KVAEVEEGSTVAIFG-LGAVGLSVLIRI 228
             A ++ G TV + G  G VG S  I++
Sbjct: 136 DRAGLKPGETVLVHGAAGGVG-SAAIQL 162

Length = 326

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 84.7 bits (210), Expect = 4e-19
 Identities = 68/211 (32%), Positives = 93/211 (44%), Gaps = 34/211 (16%)

Query: 24  RAAISRIPGKPLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           RA +   PG   V EE+  DP   +  +  I+++ T +C SD+  +R   P     P  +
Sbjct: 2   RATVIHGPGDIRV-EEVP-DPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPI 57

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           GHE VGVVE VG  V  V+ GD V+  F    G C  C++  +  C   V+        D
Sbjct: 58  GHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSC---VHGGFWGAFVD 114

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL------LSCGVST 195
           G       +GE          +    + D T +VK  P  P D   L      LS  + T
Sbjct: 115 GG------QGE----------YVRVPLADGT-LVK-VPGSPSDDEDLLPSLLALSDVMGT 156

Query: 196 GLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           G  AA   A V  GSTV + G GAVGL  ++
Sbjct: 157 GHHAA-VSAGVRPGSTVVVVGDGAVGLCAVL 186

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 84.5 bits (210), Expect = 5e-19
 Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 45/202 (22%)

Query: 33  KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILGHEAVGVVE 90
             L +EE  +  P  GEV +++    +C SDV +++  +    +   P +LGHE+ G V 
Sbjct: 8   GDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVV 67

Query: 91  SVGGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICS--KFVNKDNQSMPRDGT 143
           +VG GV  ++ GD V     +P     C  C  CKS + N+C   +F      + P DGT
Sbjct: 68  AVGSGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNLCPDMRFA----ATPPVDGT 118

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGVSTGLGAA 200
                                 Y         K+  ++ L+   L   LS GV      A
Sbjct: 119 -------------------LCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGV-----HA 154

Query: 201 WKVAEVEEGSTVAIFGLGAVGL 222
            + A V  G TV +FG G +GL
Sbjct: 155 CRRAGVRPGDTVLVFGAGPIGL 176

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 84.2 bits (209), Expect = 5e-19
 Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 36/213 (16%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A + R  G P  L   ++    P   EV +++   +L H D+   R         P IL
Sbjct: 2   KAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHIL 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGD-CGECRDCKSPKSNICSKFVNKDNQSMPR 140
           G +  GVVE+VG GV  V+ G  V+ ++ G  CG C  C + + N+C+++          
Sbjct: 62  GSDGAGVVEAVGPGVTNVKPGQRVV-IYPGISCGRCEYCLAGRENLCAQY---GILGEHV 117

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAA 200
           DG                    + EY  V   +++ I  ++  + A        T    A
Sbjct: 118 DGG-------------------YAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLT----A 154

Query: 201 WKV----AEVEEGSTVAIFGLGA-VGLSVLIRI 228
           W +    A +  G TV + G G+ VG +  I+I
Sbjct: 155 WHMLVTRARLRPGETVLVHGAGSGVGSAA-IQI 186

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 30/180 (16%)

Query: 52  IKILCTSLCHSDVTFWRSTQPPMAVFP-RILGHEAVGVVESVGGGVEEVREGDLVLPVFQ 110
           +K+L T++C +D+   +   P   V P RILGHE VGVVE VG  V   + GD VL    
Sbjct: 30  VKMLKTTICGTDLHILKGDVP--TVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCI 87

Query: 111 GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD 170
             CG C  C+            K   S    G        G ++ N+++ +   EY  V 
Sbjct: 88  SSCGTCGYCR------------KGLYSHCESG--------GWILGNLIDGTQ-AEY--VR 124

Query: 171 VTH----VVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           + H    + K+   +  + A +LS  + TG        +V+ G TVAI G G VGL+ L+
Sbjct: 125 IPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALL 184

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 80.3 bits (198), Expect = 2e-17
 Identities = 59/201 (29%), Positives = 85/201 (42%), Gaps = 41/201 (20%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW------RSTQPPMAVFPRILGHE 84
           PG    + E+ V  P  GEV IK+L TS+C +DV  +      +S   P    P+++GHE
Sbjct: 7   PGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKP----PQVVGHE 62

Query: 85  AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTN 144
             G V  +G GVE ++ GD V       CG+C  C+  + ++C    N     +  DG  
Sbjct: 63  VAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQ---NTKIFGVDTDGC- 118

Query: 145 RFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGVSTGLGAAW 201
                             F EY VV   ++ K    IP + A +   L   V T L    
Sbjct: 119 ------------------FAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL---- 156

Query: 202 KVAEVEEGSTVAIFGLGAVGL 222
             A    G +V + G G +GL
Sbjct: 157 --AGPISGKSVLVTGAGPIGL 175

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 54/206 (26%), Positives = 79/206 (38%), Gaps = 43/206 (20%)

Query: 33  KPLVMEEI------EVDPPKAG--EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHE 84
           K   M  I      E   P  G  +  ++    + C SDV       P       ILGHE
Sbjct: 2   KAFAMLGIGKVGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERH-GMILGHE 60

Query: 85  AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICS------KFVNKDNQSM 138
           AVGVVE VG  V++ + GD V+             +    +         KF      S 
Sbjct: 61  AVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKF------SN 114

Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITPDIPLDIACLLSCGVSTG 196
            +DG                    F EY  V+    ++  +   +  + A +L   +STG
Sbjct: 115 FKDGV-------------------FAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTG 155

Query: 197 LGAAWKVAEVEEGSTVAIFGLGAVGL 222
              A ++A ++ G TVA+FG+G VGL
Sbjct: 156 FHGA-ELANIKLGDTVAVFGIGPVGL 180

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 58/204 (28%), Positives = 82/204 (40%), Gaps = 33/204 (16%)

Query: 32  GKPLVMEEIEVDPPK---AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
           G P  +   +V  PK     +  ++I  T++C SD+  +R           +LGHEA+G 
Sbjct: 7   GGPGNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGAEP--GLVLGHEAMGE 64

Query: 89  VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD 148
           VE VG  VE ++ GD V+  F   CG CR+CK   + +C   VN           +    
Sbjct: 65  VEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCL-TVNPGRAGGAYGYVDMGPY 123

Query: 149 LKGEVIHNVLNVSSFTEYTVV---DVTHVVKITPDIP----LDIACLLSCGVSTGLGAAW 201
             G+            EY  V   D   ++K+          D   L     S      W
Sbjct: 124 GGGQ-----------AEYLRVPYADFN-LLKLPDRDGAKEKDDYLML-----SDIFPTGW 166

Query: 202 KVAE---VEEGSTVAIFGLGAVGL 222
              E   V+ G TVA+FG G VGL
Sbjct: 167 HGLELAGVQPGDTVAVFGAGPVGL 190

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 78.8 bits (195), Expect = 6e-17
 Identities = 62/211 (29%), Positives = 89/211 (42%), Gaps = 41/211 (19%)

Query: 26  AISRIPGKP-LVMEEIEVDPPKAGEVRIKILCTSLCHSD---VTFWRSTQPPMAVFPRIL 81
           AI+  PGKP + + +I    P  GEV ++ L   +C +D   V     T PP   F  +L
Sbjct: 3   AIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDF-LVL 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           GHEA+GVVE VG G   +  GDLV+P  +   G+C +C+                     
Sbjct: 62  GHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRI------------GRPDFCET 108

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGVSTGLG 198
           G    R +KG  +H  +      EY V D  ++VK+ P +  D+  L   LS        
Sbjct: 109 GEYTERGIKG--LHGFM-----REYFVDDPEYLVKVPPSL-ADVGVLLEPLSVVEK---- 156

Query: 199 AAWKVAE-------VEEGSTVAIFGLGAVGL 222
            A + AE               + G G +GL
Sbjct: 157 -AIEQAEAVQKRLPTWNPRRALVLGAGPIGL 186

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 31/195 (15%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR--STQPPMAVFPRILGHEAVGVVESV 92
           L +EE     P  GEVR+++    +C SD+ +++           P +LGHE  GVVE+V
Sbjct: 9   LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAV 68

Query: 93  GGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFR 147
           G GV  +  G  V      P     CG C  C++ + N+C         +M      RF 
Sbjct: 69  GPGVTGLAPGQRVAVNPSRP-----CGTCDYCRAGRPNLCL--------NM------RF- 108

Query: 148 DLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVE 207
              G  +        F EY VVD +  V +   + L  A  L+  ++  L A  +  ++ 
Sbjct: 109 --LGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAA-LAEPLAVALHAVNRAGDL- 164

Query: 208 EGSTVAIFGLGAVGL 222
            G  V + G G +G 
Sbjct: 165 AGKRVLVTGAGPIGA 179

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 73.4 bits (180), Expect = 5e-15
 Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 18/191 (9%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
           PGKP+V   +E+    AG+V +K+    +CH+D++++          P  LGHE  G V 
Sbjct: 7   PGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVI 66

Query: 91  SVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLK 150
             G G        +++P     CGEC  CK+ +  IC        Q MP +      D++
Sbjct: 67  QAGAGAASWIGKAVIVPAVI-PCGECELCKTGRGTICR------AQKMPGN------DMQ 113

Query: 151 GEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGS 210
           G    +++  +      VVD   +      +PL+   +++  V+T   AA + A +++G 
Sbjct: 114 GGFASHIVVPAKG--LCVVDEARLAA--AGLPLEHVSVVADAVTTPYQAAVQ-AGLKKGD 168

Query: 211 TVAIFGLGAVG 221
            V + G G VG
Sbjct: 169 LVIVIGAGGVG 179

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 47/211 (22%), Positives = 69/211 (32%), Gaps = 65/211 (30%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKA--GEVRIKILCTSLCHSDVTFWRSTQPPMAV---FP 78
           +A      G P V+E  +V  P+   GEV +K+    +   D+   R      A     P
Sbjct: 2   KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLK-IREGLLKAAFPLTLP 60

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
            I GH+  GVV +VG GV   + GD V               +P                
Sbjct: 61  LIPGHDVAGVVVAVGPGVTGFKVGDEVF------------GMTP---------------F 93

Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLG 198
            R G                    + EY VV    +     ++  + A       +  L 
Sbjct: 94  TRGGA-------------------YAEYVVVPADELALKPANLSFEEA------AALPLA 128

Query: 199 A--AW----KVAEVEEGSTVAIFG-LGAVGL 222
              AW    ++  ++ G TV I G  G VG 
Sbjct: 129 GLTAWQALFELGGLKAGQTVLIHGAAGGVGS 159

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 70.2 bits (172), Expect = 7e-14
 Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 39/221 (17%)

Query: 17  AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ----- 71
            GK+    + + R P   L +E++ V   K  E+ I++    +C SD+  + + +     
Sbjct: 23  EGKLTNLGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYIL 80

Query: 72  -PPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF 130
            P +  FP ++GHE  GVVE  G  V+   +GD V       CG CR C+S   N C   
Sbjct: 81  YPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHC--- 137

Query: 131 VNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP-------DIPL 183
            N        DG                   +F EY  V+  +  +I         D   
Sbjct: 138 KNLKELGFSADG-------------------AFAEYIAVNARYAWEINELREIYSEDKAF 178

Query: 184 DIACLLSCGVSTGLGAAWKVA-EVEEGSTVAIFGLGAVGLS 223
           +   L+    S      +        G+ V ++G G +GL+
Sbjct: 179 EAGALVE-PTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLA 218

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 69.9 bits (171), Expect = 8e-14
 Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 17/174 (9%)

Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV-LP 107
           +V +KIL   +CHSD+   ++ +     +P + GHE VG+V  +G  V++ +EGD V + 
Sbjct: 39  DVTVKILYCGVCHSDLHTIKN-EWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVG 97

Query: 108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT 167
           V  G C  C  C     N C K +   N S+  DGT               N   +++  
Sbjct: 98  VIVGSCKSCESCDQDLENYCPKMIFTYN-SIGHDGTK--------------NYGGYSDMI 142

Query: 168 VVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVG 221
           VVD   V++   ++PLD    L C   T           E G  + + GLG +G
Sbjct: 143 VVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLG 196

Length = 360

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 60/199 (30%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF--PRILGHEAVGV 88
           PG+   +EE     P  G+V +++    +C SD+  +   +P       P   GHE  G 
Sbjct: 4   PGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGR 62

Query: 89  VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD 148
           V ++G GV  +  GD V                                           
Sbjct: 63  VVALGPGVRGLAVGDRVA------------------------------------------ 80

Query: 149 LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP--LDIACLLSCGVSTGLGAAWKVAEV 206
                    L+  +F EY + D  H V +   +         L C ++      ++   +
Sbjct: 81  --------GLSGGAFAEYDLADADHAVPLPSLLDGQAFPGEPLGCALN-----VFRRGWI 127

Query: 207 EEGSTVAIFGLGAVGLSVL 225
             G TVA+ G G +GL  L
Sbjct: 128 RAGKTVAVIGAGFIGLLFL 146

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 40/206 (19%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDV-----TFWRSTQPPMAVFP 78
           +AA+        V+ E  + P K GE  +K+    +CH+D+      F   T        
Sbjct: 2   KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTG------- 54

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVLPV--FQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           RILGHE +G+V+ VG GV  ++ GD V     F+G CG C  C + +  +C    +  N 
Sbjct: 55  RILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEG-CGHCEYCTTGRETLCR---SVKNA 110

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVST 195
               DG                      E  +V   + VK+   +    A  ++C GV+T
Sbjct: 111 GYTVDG-------------------GMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTT 151

Query: 196 GLGAAWKVAEVEEGSTVAIFGLGAVG 221
               A KV+ ++ G  +AI+G G +G
Sbjct: 152 --YKAIKVSGIKPGQWIAIYGAGGLG 175

Length = 338

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 60/182 (32%), Positives = 82/182 (45%), Gaps = 22/182 (12%)

Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV-LP 107
           +V IK++   +CH+D+   ++    M+ +P + GHE VG V  VG  V +   GD+V + 
Sbjct: 36  DVVIKVIYCGICHTDLHQIKNDLG-MSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVG 94

Query: 108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT 167
           V  G CGEC  CKS     C+K +   N  +  DG    +  +G           F    
Sbjct: 95  VIVGCCGECSPCKSDLEQYCNKRIWSYN-DVYTDG----KPTQG----------GFASAM 139

Query: 168 VVDVTHVVKITPD--IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVG-LSV 224
           VVD   VVKI P+   P   A LL  GV T           + G    I GLG VG + V
Sbjct: 140 VVDQKFVVKI-PEGMAPEQAAPLLCAGV-TVYSPLSHFGLKQSGLRGGILGLGGVGHMGV 197

Query: 225 LI 226
            I
Sbjct: 198 KI 199

Length = 357

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           RA      G P  L +EE+ V  P AGEV I++    L  +D  F R         P  L
Sbjct: 2   RAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARL 61

Query: 82  GHEAVGVVESVGGGVEEVREGD--LVLPVF 109
           G+EA GVVE+VG GV     GD   V+P  
Sbjct: 62  GYEAAGVVEAVGAGVTGFAVGDRVSVIPAA 91

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 60/217 (27%), Positives = 85/217 (39%), Gaps = 49/217 (22%)

Query: 37  MEEIEVDPPKAGEVRIKILCTSLCHSDV-------TFWRST-QPPMAVFPRILGHEAVGV 88
           +EE+ V  P  GE+ +K+    +C  D+       +FW    QPP    P I GHE VG 
Sbjct: 14  LEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGR 73

Query: 89  VESVGGGVEE--VREGDLVLPVFQGDCGECRDCKSPKSNICSK-----FVNKDNQSMPRD 141
           V  +G G EE  V+ GD V+      C  CR C   +  +C K     F N  N  M   
Sbjct: 74  VVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGM--- 130

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV-KITPDIPLDIACL---LSCGVSTGL 197
                                  EY       +V K+  DIP + A L   L+C +    
Sbjct: 131 ----------------------AEYMRFPKEAIVHKVPDDIPPEDAILIEPLACALH--- 165

Query: 198 GAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234
             A   A ++    V + G G +GL ++    LK  +
Sbjct: 166 --AVDRANIKFDDVVVLAGAGPLGLGMIGAARLKNPK 200

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 26/174 (14%)

Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPV 108
           +V +K+  + LC SD+   R  +     +P  LGHE  G VE+VG GV+++  GD V  V
Sbjct: 27  DVLVKVASSGLCGSDIP--RIFKNGAHYYPITLGHEFSGYVEAVGSGVDDLHPGDAVACV 84

Query: 109 FQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV 168
               C  C +C     ++C+K+   D     RDG N                    EY V
Sbjct: 85  PLLPCFTCPECLRGFYSLCAKY---DFIGSRRDGGN-------------------AEYIV 122

Query: 169 VDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGL 222
           V   ++  +  D+P++    +   ++ GL  A+ +A+  EG  V I G G +GL
Sbjct: 123 VKRKNLFALPTDMPIEDGAFIE-PITVGL-HAFHLAQGCEGKNVIIIGAGTIGL 174

Length = 347

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 64.3 bits (156), Expect = 6e-12
 Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 18/175 (10%)

Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV-LP 107
           +V +KIL   +CHSD+   ++     + +P I GHE VG+   VG  V + +EGD V + 
Sbjct: 33  DVTVKILFCGVCHSDLHTIKN-HWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVG 91

Query: 108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT 167
           V  G C  C  C     N C K V   N S   DGT               N   +++  
Sbjct: 92  VIIGSCQSCESCNQDLENYCPKVVFTYN-SRSSDGTR--------------NQGGYSDVI 136

Query: 168 VVDVTHVVKITPDIPLDI-ACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVG 221
           VVD   V+ I   +P D  A LL  G++      +     E G  + + GLG +G
Sbjct: 137 VVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLG 191

Length = 375

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 31  PGKPLVMEEIEVD--PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
              PLV+E + +   PP  GEV +++L   +  SD+             P + G+E VGV
Sbjct: 8   EPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGV 67

Query: 89  VESVGGGVEEVREGDLVLPVF 109
           V  VG GV  +  G  VLP+ 
Sbjct: 68  VVEVGSGVSGLLVGQRVLPLG 88

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 24  RAAISRIPGKPL-VMEEIEVDP--PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           RAA+    G P  V+E  EV    P AGEV ++   + + + D+   R T       P I
Sbjct: 2   RAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAI 61

Query: 81  LGHEAVGVVESVGGGVEEVREGDLV 105
            G EAVGVV++VG GV+ ++ G  V
Sbjct: 62  GGSEAVGVVDAVGEGVKGLQVGQRV 86

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 54/188 (28%), Positives = 78/188 (41%), Gaps = 37/188 (19%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSD---VTFWRSTQPPMAVFPRILGHEAVGVVES 91
           L +E+++   P  GEV I++    +   D   +   +    PM   P I G E  GVVE 
Sbjct: 14  LKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVK--PM---PHIPGAEFAGVVEE 68

Query: 92  VGGGVEEVREGDLVL---PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD 148
           VG  V+ V++GD V+    VF    G C  C S    +C            R+G      
Sbjct: 69  VGDHVKGVKKGDRVVVYNRVF---DGTCDMCLSGNEMLC------------RNGG----- 108

Query: 149 LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEE 208
                I  V++   + EY VV   ++ KI   I  ++A  L     T   A  K A +  
Sbjct: 109 -----IIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL-KTAGLGP 162

Query: 209 GSTVAIFG 216
           G TV +FG
Sbjct: 163 GETVVVFG 170

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 54/213 (25%), Positives = 78/213 (36%), Gaps = 59/213 (27%)

Query: 24  RAAI-SRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS-TQPPMAVFPRIL 81
           +AA+ +   G  LV+ ++ V  P   EV +K+   +L   D   W+      +  +P IL
Sbjct: 2   KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVD---WKHQDYGFIPSYPAIL 58

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           G +  G V  VG GV   + GD V        G               FV+  N + PR+
Sbjct: 59  GCDFAGTVVEVGSGVTRFKVGDRV-------AG---------------FVHGGNPNDPRN 96

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST------ 195
           G                   +F EY V D     KI  +I  + A  L  G+ T      
Sbjct: 97  G-------------------AFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALF 137

Query: 196 ---GLGAAWKVAE-VEEGSTVAIFGLG--AVGL 222
              GL           +G  V I+G G  +VG 
Sbjct: 138 QKLGLPLPPPKPSPASKGKPVLIWG-GSSSVGT 169

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 31  PGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
            G P V+  E++ V  P  GEV ++     +   D  F RS   P+   P +LG E  GV
Sbjct: 8   TGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYF-RSGLYPLP-LPFVLGVEGAGV 65

Query: 89  VESVGGGVEEVREGDLV 105
           VE+VG GV   + GD V
Sbjct: 66  VEAVGPGVTGFKVGDRV 82

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A +   PG P  L + EI +  PK G V I++    L  S++ F R    P   FPR+L
Sbjct: 2   KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEI-FTRQGHSPSVKFPRVL 60

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G EAVG VE   GG      G  V
Sbjct: 61  GIEAVGEVEEAPGG--TFTPGQRV 82

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 47/199 (23%), Positives = 65/199 (32%), Gaps = 55/199 (27%)

Query: 31  PGKPLVMEEIEVD----PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA--VFPRILGHE 84
            G P V+  +EV+     PK GEV +K+   S+   D    R     +    FP I G +
Sbjct: 6   YGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMD 65

Query: 85  AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTN 144
             G V +VG GV   + GD V     G                                 
Sbjct: 66  FAGEVVAVGSGVTRFKVGDEVF----GRLPPKG--------------------------- 94

Query: 145 RFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI-PLDIACLLSCGVSTGLGAAWKV 203
                 G          +  EY V   + + K    +   + A L   G+ T L A    
Sbjct: 95  -----GG----------ALAEYVVAPESGLAKKPEGVSFEEAAALPVAGL-TALQALRDA 138

Query: 204 AEVEEGSTVAIFGL-GAVG 221
            +V+ G  V I G  G VG
Sbjct: 139 GKVKPGQRVLINGASGGVG 157

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 60/191 (31%), Positives = 82/191 (42%), Gaps = 29/191 (15%)

Query: 50  VRIKILCTSLCHSD--VTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLP 107
           V +K++ T++C SD  +   R+T P   V    LGHE  G V   G  VE ++ GD+V  
Sbjct: 36  VILKVVTTNICGSDQHMVRGRTTAPTGLV----LGHEITGEVIEKGRDVEFIKIGDIVSV 91

Query: 108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT 167
            F   CG CR+CK   + +C   VN             + D+ G        V   +EY 
Sbjct: 92  PFNIACGRCRNCKEGHTGVCLN-VNPARAG----AAYGYVDMGGW-------VGGQSEYV 139

Query: 168 VVDVT--HVVKITPDIP------LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGA 219
           +V     +++K  PD         D+   LS    TG   A   A V  GSTV I G G 
Sbjct: 140 MVPYADFNLLKF-PDRDQALEKIRDLTM-LSDIFPTGYHGAV-TAGVGPGSTVYIAGAGP 196

Query: 220 VGLSVLIRIHL 230
           VGL+      L
Sbjct: 197 VGLAAAASAQL 207

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 50/192 (26%), Positives = 70/192 (36%), Gaps = 30/192 (15%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94
           L + E  V  P  GEV +++   SL + D+       PP    P I   +  G V +VG 
Sbjct: 15  LKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGE 74

Query: 95  GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVI 154
           GV   + GD V+P F                        +    P    +    L G  I
Sbjct: 75  GVTRFKVGDRVVPTF----------------------FPNWLDGPPTAEDEASAL-GGPI 111

Query: 155 HNVLNVSSFTEYTVVDVTHVVKITPDIPLDI-ACLLSCGVSTGLGAAWKVAEVEEGSTVA 213
             VL      EY V+    +V+  PD      A  L C   T   A + +  ++ G TV 
Sbjct: 112 DGVL-----AEYVVLPEEGLVRA-PDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVL 165

Query: 214 IFGLGAVGLSVL 225
           + G G V L  L
Sbjct: 166 VQGTGGVSLFAL 177

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 24  RAAISRIPGKPLVMEEIEVD--PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A +    G P V E  EV    P  G+V +++  + +   D    R         P IL
Sbjct: 2   KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAIL 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G +  GVVE+VG GV   R GD V
Sbjct: 62  GCDVAGVVEAVGEGVTRFRVGDEV 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 53/209 (25%), Positives = 74/209 (35%), Gaps = 55/209 (26%)

Query: 23  CRAAISRIPGKPLVMEEIEVD--PPKAGEVRIKILCTSLCHSD--VTFWRSTQPPMAVFP 78
            +A +   PG  L +   E++   P AGEV +K+    L   D  V  W          P
Sbjct: 1   MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSY---P 57

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
            + G +  GVV +VG  V   + GD V                             + S+
Sbjct: 58  HVPGVDGAGVVVAVGAKVTGWKVGDRVAY---------------------------HASL 90

Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLG 198
            R G                   SF EYTVVD   V+ +   +  + A  L C   T   
Sbjct: 91  ARGG-------------------SFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQ 131

Query: 199 AAWKVAEVEEGSTVAIFGL-GAVGLSVLI 226
           A +K   +E G T+ I G  G VG S  +
Sbjct: 132 ALFKKLRIEAGRTILITGGAGGVG-SFAV 159

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 32  GKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVES 91
           G  L +E++    P  GE  +++L   +C++D+  ++   P    FP + GHE VG+VE 
Sbjct: 9   GLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEE 64

Query: 92  VGGG--VEEVREGDLVLPVFQGDCGECRDCKS 121
                 V +   G++ +      CG C  C+ 
Sbjct: 65  GPEAELVGKRVVGEINIA-----CGRCEYCRR 91

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR---STQPPMAVFP 78
           +A + +  G P  LV+EE+  +P   GEVRI++    +   D+   +     +PP+   P
Sbjct: 2   KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPL---P 58

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVL 106
            + G E  GVVE+VG GV   + GD V+
Sbjct: 59  FVPGSEVAGVVEAVGEGVTGFKVGDRVV 86

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 54/199 (27%)

Query: 31  PGKPLVMEEIEVD--PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
            G P V++ +E D   P AGEV +K+  + +  +DV   R   P     P   G++ VG 
Sbjct: 9   RGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGR 68

Query: 89  VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD 148
           V+++G GV     GD V                               ++ R G N    
Sbjct: 69  VDALGSGVTGFEVGDRVA------------------------------ALTRVGGN---- 94

Query: 149 LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL-DIACLLSCGVSTGLGAAWKVAEVE 207
                           EY  +D  ++V +   +   +  CL+   V T      + A+V 
Sbjct: 95  ---------------AEYINLDAKYLVPVPEGVDAAEAVCLVLNYV-TAYQMLHRAAKVL 138

Query: 208 EGSTVAIFGL-GAVGLSVL 225
            G  V I G  G VG ++L
Sbjct: 139 TGQRVLIHGASGGVGQALL 157

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 32/145 (22%), Positives = 43/145 (29%), Gaps = 54/145 (37%)

Query: 78  PRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS 137
           P   G+ +VG V  VG GV   + GD V                        F    +  
Sbjct: 21  PLPPGYSSVGRVVEVGSGVTGFKPGDRV------------------------FCFGPHAE 56

Query: 138 MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGL 197
                                         VV    +V +   +P + A L +   +T L
Sbjct: 57  ----------------------------RVVVPANLLVPLPDGLPPERAALTALA-ATAL 87

Query: 198 GAAWKVAEVEEGSTVAIFGLGAVGL 222
                 AE   G  VA+ GLG VGL
Sbjct: 88  NGVRD-AEPRLGERVAVVGLGLVGL 111

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 23/151 (15%)

Query: 80  ILGHEAVGVVESVGGGV------EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNK 133
           +LGHE VG V ++ GG         +R G  V+      CG C  C+      C      
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY 60

Query: 134 DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV-VDVTHVVKITPDIPLDIACLLSCG 192
            ++++          L G           + E+      T +V +  D+P  +A    C 
Sbjct: 61  GHEALDSGW-----PLSG----------GYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCA 105

Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLS 223
            +T + A     ++ +G  V + G G +GL+
Sbjct: 106 TATVMAALEAAGDL-KGRRVLVVGAGMLGLT 135

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 31  PGKP---LVMEEIEVDPPKA-GEVRIKILCTSLCHSDVTFWRST---QPPMAV-FPRILG 82
            G+P   L +E  E+ PP    EV +K+L   +  +D+   +     +PP     P + G
Sbjct: 9   HGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGG 68

Query: 83  HEAVGVVESVGGGVEEVREGDLVLP 107
           +E VG V  VG GV+ ++ GD V+P
Sbjct: 69  NEGVGEVVKVGSGVKSLKPGDWVIP 93

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 32  GKPLVMEEIEVDP--PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVV 89
           G P V++ +E  P  P   EV+++     + + D T+ RS   P    P  LG EA GVV
Sbjct: 11  GGPEVLQAVEFTPADPAENEVQVENKAIGINYID-TYIRSGLYPPPSLPSGLGTEAAGVV 69

Query: 90  ESVGGGVEEVREGDLV 105
             VG GV+ ++ GD V
Sbjct: 70  SKVGSGVKHIKVGDRV 85

Length = 327

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 53/215 (24%)

Query: 24  RAAISRIPGKPLVMEEIEVDP-PKAGEVRIKILCTSLCHSDVTFWR--------STQPPM 74
           RAA+ R    PLV+ ++  DP P  G+V +K+L   +C SD+            +  P +
Sbjct: 2   RAAVFR--DGPLVVRDVP-DPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSL 58

Query: 75  AVFPR--ILGHEAVGVVESVGGGVE-EVREGDLV--LPVFQGDCGECRDCKSPKSNICSK 129
                  +LGHE  G V   G G E +++ G  V  LP+    CG+   C    S     
Sbjct: 59  MDLGADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLL--CGQGASCGIGLSP---- 112

Query: 130 FVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLL 189
                             +  G           + EY ++    ++++   + ++ A L 
Sbjct: 113 ------------------EAPG----------GYAEYMLLSEALLLRVPDGLSMEDAALT 144

Query: 190 SCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
              ++ GL A  + A +  G    + G G +GL+V
Sbjct: 145 E-PLAVGLHAV-RRARLTPGEVALVIGCGPIGLAV 177

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVF----PRILGHEAVGVVESVGGGVEEVREGDL 104
           +VR+++    +C SDV + ++ +   A F    P ++GHE  G++E VG  V+ +  GD 
Sbjct: 43  DVRVRMKAVGICGSDVHYLKTMR--CADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDR 100

Query: 105 VLPVFQGDCGECRDCKSPKSNIC 127
           V       C  C  CK  + N+C
Sbjct: 101 VALEPGISCWRCNLCKEGRYNLC 123

Length = 364

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 48.7 bits (117), Expect = 8e-07
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS-TQPPMAVFPRI 80
           RA      G P  L + ++ V  P  GEV +++  + +   D T+ R+   P +   P +
Sbjct: 2   RAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVD-TYIRAGAYPGLPPLPYV 60

Query: 81  LGHEAVGVVESVGGGVEEVREGDLV 105
            G +  GVVE+VG GV+ ++ GD V
Sbjct: 61  PGSDGAGVVEAVGEGVDGLKVGDRV 85

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 24  RAAISRIPGKPLVMEEIEV-DP-PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A + + PG P V+E  EV  P P  GEV I++    +  +D+   +   PP      IL
Sbjct: 2   KAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDIL 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G E  GVV +VG GV   + GD V
Sbjct: 62  GLEVAGVVVAVGPGVTGWKVGDRV 85

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 34  PLVMEEIEVDPPKAG--EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVES 91
           P  + +IE+  P  G  ++ +++   S+   D T  R+   P+   P+ILG +A GVVE+
Sbjct: 15  PDSLIDIELPKPVPGGRDLLVRVEAVSVNPVD-TKVRAGGAPVPGQPKILGWDASGVVEA 73

Query: 92  VGGGVEEVREGDLV 105
           VG  V   + GD V
Sbjct: 74  VGSEVTLFKVGDEV 87

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 35/66 (53%)

Query: 41  EVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100
           EV PP  GEVRI++   SL   D+   R   P M  +P   G EA GVV +VG  V  + 
Sbjct: 1   EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLA 60

Query: 101 EGDLVL 106
            GD V+
Sbjct: 61  VGDEVI 66

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 22/69 (31%), Positives = 29/69 (42%)

Query: 29 RIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
           +  K L + E EV  P  GEV IK+    +  SD+ F +         P   G E  G 
Sbjct: 12 PLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGT 71

Query: 89 VESVGGGVE 97
          V + GGG  
Sbjct: 72 VVAAGGGPL 80

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 35/191 (18%)

Query: 34  PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF-PRIL-GHEAVGVVES 91
           PL   E  V  P  GE+ +++    +C +D+     ++  + V  PR+  GHE VG V  
Sbjct: 14  PLRFVERPVPRPGPGELLVRVRACGVCRTDL---HVSEGDLPVHRPRVTPGHEVVGEVAG 70

Query: 92  VGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNIC--SKFVNKDNQSMPRDGTNRFRD 148
            G        GD V +   +  CG CR C+    N+C  S++   D      DG      
Sbjct: 71  RGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDT-----DG------ 119

Query: 149 LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP-LDIACLLSCGVSTGLGAAWKVAEVE 207
                         + EYT V      ++      +++A LL  G+  G  A  + A + 
Sbjct: 120 -------------GYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGI-IGYRALLR-ASLP 164

Query: 208 EGSTVAIFGLG 218
            G  + ++G G
Sbjct: 165 PGGRLGLYGFG 175

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 46/209 (22%), Positives = 70/209 (33%), Gaps = 53/209 (25%)

Query: 38  EEIEVDPPKAGEVRIKILCTSLCHSDV--------------------TFWRSTQPPMAVF 77
           +++ V  P  GEV I++    + ++D+                             +  F
Sbjct: 19  DDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTL-SF 77

Query: 78  PRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS 137
           PRI G + VG V +VG GV+  R G+ VL          RD             ++    
Sbjct: 78  PRIQGADIVGRVVAVGEGVDTARIGERVLVDPS-----IRDPPEDDPADIDYIGSE---- 128

Query: 138 MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGL 197
             RDG                    F EYTVV   +   +   +         C  ST  
Sbjct: 129 --RDG-------------------GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAE 167

Query: 198 GAAWKVAEVEEGSTVAIFGL-GAVGLSVL 225
               + A V  G TV + G  G VG +++
Sbjct: 168 NMLER-AGVGAGETVLVTGASGGVGSALV 195

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 24  RAAISRIPGKPLVME--EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           RA   +  G   V++  E     PK  +V IK+    +  +D    +   PP      IL
Sbjct: 3   RAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEIL 62

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQG 111
           G E  G VE VG  V+  +EGD V+ +  G
Sbjct: 63  GLEVAGYVEDVGSDVKRFKEGDRVMALLPG 92

Length = 334

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 21/123 (17%)

Query: 50  VRIKILCTSLCHSDVTFWRSTQPPMAVF--PRILGHEAVGVVESVGGGVEEVREGDLVLP 107
             ++I    +C SD+ +++  +    V   P +LGHE +G +         ++EG  V  
Sbjct: 30  TLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHSDS--SGLKEGQTVAI 87

Query: 108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT 167
                CG C+ C S   N C               T RF    G  ++       FT Y 
Sbjct: 88  NPSKPCGHCKYCLSHNENQC--------------TTMRFF---GSAMYFPHVDGGFTRYK 130

Query: 168 VVD 170
           VVD
Sbjct: 131 VVD 133

Length = 343

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 32  GKPLVMEEIEVDPPKAGE--VRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVV 89
             P  + +I++  PK G   + +++   S+   D        P  A  P+ILG +A GVV
Sbjct: 12  TDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVV 70

Query: 90  ESVGGGVEEVREGDLV 105
            +VG  V   + GD V
Sbjct: 71  VAVGDEVTLFKPGDEV 86

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 31  PGKPLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
           PG P V+  +EV  P  KAGEV I++    +   D+       PP      ILG E  G 
Sbjct: 9   PGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGE 68

Query: 89  VESVGGGVEEVREGDLV 105
           V +VG GV   + GD V
Sbjct: 69  VVAVGEGVSRWKVGDRV 85

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 48  GEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLP 107
            EV +++    L   DV       P        LG E  G+V  VG GV  ++ GD V+ 
Sbjct: 1   DEVEVEVKAAGLNFRDVLVALGLLPGD---ETPLGLECSGIVTRVGSGVTGLKVGDRVMG 57

Query: 108 VFQG 111
           +  G
Sbjct: 58  LAPG 61

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 38  EEIEVDPPKAGEVRIKILCTSLCHSDVTF-----WRSTQPPMAVFPRILGHEAVGVVESV 92
            ++ V  P  GEV +K     +  SD+ F         +PP        G E VG V +V
Sbjct: 21  VDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFD-----CGFEGVGEVVAV 75

Query: 93  GGGVEEVREGDLV 105
           G GV + + GD V
Sbjct: 76  GEGVTDFKVGDAV 88

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVT----FWRSTQPPMAVFPRILGHEAVGVVE 90
           L +E+  +  P +GEVR+++    L  +D+      + S   P    P + G E  G VE
Sbjct: 14  LKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKP----PFVPGFECAGTVE 69

Query: 91  SVGGGVEEVREGDLVL 106
           +VG GV++ + GD V+
Sbjct: 70  AVGEGVKDFKVGDRVM 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 13/86 (15%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPR----------- 79
           P + + +E++ V     GEV + ++   + +++V  W +   P++ F             
Sbjct: 26  PAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNV--WAALGEPVSTFAARQRRGRDEPYH 83

Query: 80  ILGHEAVGVVESVGGGVEEVREGDLV 105
           I G +A G+V +VG GV+  + GD V
Sbjct: 84  IGGSDASGIVWAVGEGVKNWKVGDEV 109

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 35 LVMEEIEVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILGHEAVGVVES 91
          LV E++  DP P  G+VRI +    +   D          P     P + G E  GVV++
Sbjct: 15 LVPEDVP-DPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDA 73

Query: 92 VGGGVEEV 99
          VG GV+  
Sbjct: 74 VGPGVDPA 81

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 21/90 (23%)

Query: 38  EEIEVDPPKAGEVRIKILCTSLCHSD---------VTFWRSTQPPMAVFPRILGHEAVGV 88
             + +D    G+V I++  +SL + D         VT  R+       +P   G +A G 
Sbjct: 18  RTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVT--RN-------YPHTPGIDAAGT 68

Query: 89  VESVGGGVEEVREGDLVLPVFQGDCGECRD 118
           V S        REGD VL V   D G   D
Sbjct: 69  VVSS--DDPRFREGDEVL-VTGYDLGMNTD 95

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.98
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.98
PRK10083	339	putative oxidoreductase; Provisional	99.98
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.98
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.98
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.97
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.97
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.97
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.97
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.97
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.97
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.97
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.97
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.97
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.97
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.97
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.97
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.97
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.97
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.97
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.97
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.97
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.97
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.96
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.96
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.96
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.96
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.96
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.96
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.96
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.96
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.96
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.96
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.96
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.96
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.96
PLN02702	364	L-idonate 5-dehydrogenase	99.96
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.96
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.96
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.96
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.96
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.96
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.95
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.95
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.95
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.95
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.95
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.95
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.95
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.94
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.94
PTZ00354	334	alcohol dehydrogenase; Provisional	99.94
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.94
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.94
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.94
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.94
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.93
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.93
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.93
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.93
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.93
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.93
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.93
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.93
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.93
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.93
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.92
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.92
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.92
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.92
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.92
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.92
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.91
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.91
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.9
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.9
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.89
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.89
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.89
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.89
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.89
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.88
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.88
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.88
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.87
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.87
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.85
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.82
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.79
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.71
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.6
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.5
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.9
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.46
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.52
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	95.01
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	94.89
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.76
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.85
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.69
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.41
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	93.37
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.3
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.67
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.63
PLN02494	477	adenosylhomocysteinase	91.31
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	91.15
PRK08324	681	short chain dehydrogenase; Validated	90.97
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	90.86
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	90.05
PTZ00075	476	Adenosylhomocysteinase; Provisional	89.98
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	88.9
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	88.12
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	87.58
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	87.07
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	86.68
PLN03209	576	translocon at the inner envelope of chloroplast su	86.14
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	86.09
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	85.92
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	85.86
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	85.8
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	85.78
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	85.61
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	85.6
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	85.0
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	84.91
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	84.67
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	84.52
PRK08328	231	hypothetical protein; Provisional	84.47
PRK05866	293	short chain dehydrogenase; Provisional	84.38
PLN02780	320	ketoreductase/ oxidoreductase	84.25
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	83.12
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	83.05
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	82.8
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	82.73
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	82.7
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	82.64
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	82.63
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	82.55
PRK08223	287	hypothetical protein; Validated	82.4
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	82.16
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	82.12
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	81.68
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	81.65
PRK12548	289	shikimate 5-dehydrogenase; Provisional	81.59
PRK06196	315	oxidoreductase; Provisional	81.38
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	81.11
PRK15116	268	sulfur acceptor protein CsdL; Provisional	81.09
PRK06153	393	hypothetical protein; Provisional	80.87
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	80.82
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	80.35
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	80.19

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=3.6e-48  Score=344.44  Aligned_cols=202  Identities=34%  Similarity=0.519  Sum_probs=188.6

Q ss_pred             cccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~   99 (256)
                      +++|||+++.++++++++++++.|+|+++||||+|+|+|||++|+|.++|.++. ..+|.++|||.+|+|+++|++|+.|
T Consensus         1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~-~~~P~ipGHEivG~V~~vG~~V~~~   79 (339)
T COG1064           1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPV-PKLPLIPGHEIVGTVVEVGEGVTGL   79 (339)
T ss_pred             CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCC-CCCCccCCcceEEEEEEecCCCccC
Confidence            478999999999999999999999999999999999999999999999999998 5599999999999999999999999


Q ss_pred             CCCCEEee-ecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173          100 REGDLVLP-VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus       100 ~vGd~V~~-~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      ++||+|.+ ....+|+.|++|++|++++|++...   .|++.+|                   +|+||+++++++++++|
T Consensus        80 k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G-------------------Gyaeyv~v~~~~~~~iP  137 (339)
T COG1064          80 KVGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG-------------------GYAEYVVVPARYVVKIP  137 (339)
T ss_pred             CCCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC-------------------cceeEEEEchHHeEECC
Confidence            99999988 7788999999999999999999777   7878888                   99999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY  253 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~  253 (256)
                      +++++++||.+.|+..|.|+++ +.++++||++|+|+|+|++|.+++|+||++|++        ++.++..++++
T Consensus       138 ~~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~--------Via~~~~~~K~  203 (339)
T COG1064         138 EGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAE--------VIAITRSEEKL  203 (339)
T ss_pred             CCCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCe--------EEEEeCChHHH
Confidence            9999999999999999999987 569999999999999999999999999999988        56666555543

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=1.2e-43  Score=311.00  Aligned_cols=223  Identities=43%  Similarity=0.774  Sum_probs=210.7

Q ss_pred             ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      +++|++++.++++||+++++++++|+++|||||+.|+|+|++|.+.++|..|.  .||.++|||++|+|+++|+.|+.++
T Consensus         1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~--~~P~vLGHEgAGiVe~VG~gVt~vk   78 (366)
T COG1062           1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPE--GFPAVLGHEGAGIVEAVGEGVTSVK   78 (366)
T ss_pred             CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCceecccccccEEEEecCCccccC
Confidence            46899999999999999999999999999999999999999999999999998  4999999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|+..+.+.|++|+.|.+|..++|...+.+...|...||+.|++ -.+...++.+|.++|+||.++++..+++++++
T Consensus        79 pGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~  157 (366)
T COG1062          79 PGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-GNGVPVYHYLGCSTFAEYTVVHEISLVKIDPD  157 (366)
T ss_pred             CCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-cCCcceeeeeccccchhheeecccceEECCCC
Confidence            99999999999999999999999999999888888999999999999 88888999999999999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY  253 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~  253 (256)
                      .+++.++++.|...|.+.+....+++++|++|.|+|.|++|++++|-|+..|+.+       ++.++-+++++
T Consensus       158 ~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~-------IiAvD~~~~Kl  223 (366)
T COG1062         158 APLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGR-------IIAVDINPEKL  223 (366)
T ss_pred             CCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCce-------EEEEeCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999986       45555555544

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-42  Score=300.84  Aligned_cols=228  Identities=53%  Similarity=0.928  Sum_probs=212.6

Q ss_pred             cccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173           18 GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        18 ~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      .++.++||++..++++||.++|+.+++|+.+||+||++++++|++|.+.++|..+. ..||.++|||++|+|+++|..|+
T Consensus         3 gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~-~~fP~IlGHEaaGIVESvGegV~   81 (375)
T KOG0022|consen    3 GKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPE-GLFPVILGHEAAGIVESVGEGVT   81 (375)
T ss_pred             CCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCcc-ccCceEecccceeEEEEecCCcc
Confidence            56889999999999999999999999999999999999999999999999999754 68999999999999999999999


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~  176 (256)
                      ++++||+|+..+.+.|++|.+|+++..|+|...+...+.+.. .||..||+ -+|.++++-++..+|+||.++++..+.+
T Consensus        82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~v~k  160 (375)
T KOG0022|consen   82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDISVAK  160 (375)
T ss_pred             ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-eCCCceEEecccccceeEEEeecceeEe
Confidence            999999999999999999999999999999998887655554 59999999 8899999999999999999999999999


Q ss_pred             cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhhh
Q 025173          177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYS  254 (256)
Q Consensus       177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~~  254 (256)
                      ++++.+++.++.+.|.+.|+|.|.+..+++++|+++.|+|.|++|+++++-||+.||.+       ++.++-++++++
T Consensus       161 Id~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsr-------IIgvDiN~~Kf~  231 (375)
T KOG0022|consen  161 IDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASR-------IIGVDINPDKFE  231 (375)
T ss_pred             cCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCccc-------EEEEecCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999986       556665555543

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.6e-42  Score=298.78  Aligned_cols=203  Identities=30%  Similarity=0.429  Sum_probs=183.4

Q ss_pred             CcccccccceeEEEecCCC--CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEc
Q 025173           15 STAGKIIRCRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESV   92 (256)
Q Consensus        15 ~~~~~~~t~ka~~~~~~g~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~v   92 (256)
                      ++...|.++++|.+..+++  ++++.+++.|+|+++||+|+|+|+|||++|+|.+.|.++. .++|.++|||++|+|+++
T Consensus         2 ~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~Vvkv   80 (360)
T KOG0023|consen    2 SSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKV   80 (360)
T ss_pred             CcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEE
Confidence            3456689999999999988  4667999999999999999999999999999999999998 889999999999999999


Q ss_pred             cCCCcccCCCCEEee-ecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC
Q 025173           93 GGGVEEVREGDLVLP-VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (256)
Q Consensus        93 G~~v~~~~vGd~V~~-~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~  171 (256)
                      |++|+.|++||+|-+ ....+|..|++|+++.|++|++...+ +.|...||+..+              |+||+|+++++
T Consensus        81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t-~~g~~~DGt~~~--------------ggf~~~~~v~~  145 (360)
T KOG0023|consen   81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFT-YNGVYHDGTITQ--------------GGFQEYAVVDE  145 (360)
T ss_pred             CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEe-ccccccCCCCcc--------------CccceeEEEee
Confidence            999999999999965 44667999999999999999964442 356677774333              49999999999


Q ss_pred             CcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          172 THVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .+++++|++++.+.||.+.|+..|.|..| ...++.||++|.|.|+|++|.+++|+||++|.+
T Consensus       146 ~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~r  207 (360)
T KOG0023|consen  146 VFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMR  207 (360)
T ss_pred             eeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCcE
Confidence            99999999999999999999999999976 678889999999999977999999999999999

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.4e-40  Score=289.42  Aligned_cols=190  Identities=27%  Similarity=0.453  Sum_probs=175.4

Q ss_pred             ccceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCc
Q 025173           21 IRCRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        21 ~t~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      .+|+|+++.++++ +++++.|.|++ .++||+|++.++|||+||+|.+......  ..+.|+++|||.+|+|+++|+.|+
T Consensus         3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            4699999999999 99999999987 8999999999999999999999877654  245799999999999999999999


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-CCCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~  176 (256)
                      ++++||||++.+..+|+.|+.|++|++|+|++..+   .+. ..+|                   ++++|++.+++++++
T Consensus        82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f---~atpp~~G-------------------~la~y~~~~~dfc~K  139 (354)
T KOG0024|consen   82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVF---CATPPVDG-------------------TLAEYYVHPADFCYK  139 (354)
T ss_pred             ccccCCeEEecCCCccccchhhhCcccccCCcccc---ccCCCcCC-------------------ceEEEEEechHheee
Confidence            99999999999999999999999999999999887   332 3445                   999999999999999


Q ss_pred             cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +||++|++++|++. +++++||| .+++++++|++|||+|||++|+.+...||++|+.+
T Consensus       140 LPd~vs~eeGAl~e-PLsV~~HA-cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~  196 (354)
T KOG0024|consen  140 LPDNVSFEEGALIE-PLSVGVHA-CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASD  196 (354)
T ss_pred             CCCCCchhhccccc-chhhhhhh-hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCc
Confidence            99999999999987 79999997 58999999999999999999999999999999985

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=5.4e-38  Score=287.98  Aligned_cols=222  Identities=54%  Similarity=0.949  Sum_probs=180.9

Q ss_pred             cccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173           16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        16 ~~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      +.++|++||++++.++++++.++++|.|.|+++||+|||.++|||++|++.+.|.++....+|.++|||++|+|+++|++
T Consensus         4 ~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~   83 (381)
T PLN02740          4 TQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEG   83 (381)
T ss_pred             ccccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCC
Confidence            34578899999999998778899999999999999999999999999999999876433467999999999999999999


Q ss_pred             CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCC-CCCCCCcccccCC--CceeeccccccceeeeEEecCC
Q 025173           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS-MPRDGTNRFRDLK--GEVIHNVLNVSSFTEYTVVDVT  172 (256)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g-~~~~G~~~~~~~~--~~~~~~~~~~g~~aey~~v~~~  172 (256)
                      ++.|++||+|++.+...|+.|++|+.+.++.|++.......+ ...+|..+++ ..  +....+....|+|+||++++.+
T Consensus        84 v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~G~~aey~~v~~~  162 (381)
T PLN02740         84 VEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFS-TKGDGQPIYHFLNTSTFTEYTVLDSA  162 (381)
T ss_pred             CCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccc-cccCCCcccccccCccceeEEEEehH
Confidence            999999999999998999999999999999998865311000 0000100000 00  0000000012599999999999


Q ss_pred             cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173          173 HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH  238 (256)
Q Consensus       173 ~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~  238 (256)
                      .++++|+++++++++.+++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.+++.
T Consensus       163 ~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~  228 (381)
T PLN02740        163 CVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIG  228 (381)
T ss_pred             HeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEE
Confidence            999999999999999999999999998888899999999999999999999999999999964433

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=1.4e-36  Score=277.35  Aligned_cols=213  Identities=44%  Similarity=0.821  Sum_probs=176.7

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      ||++++...+..++++++|.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~~G   80 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSVKVG   80 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEECCCCccCCCC
Confidence            899999988877999999999999999999999999999999999987654 4679999999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|++.+...|+.|.+|+.+..++|.+.......|...+|..++. ..|...++..+.|+|+||++++.+.++++|++++
T Consensus        81 drV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~  159 (368)
T TIGR02818        81 DHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAP  159 (368)
T ss_pred             CEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccc-cCCCcccccccCccceeeEEechhheEECCCCCC
Confidence            999998888999999999999999987542211222222211110 0000000111235999999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP  237 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~  237 (256)
                      +++++.+++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.+++
T Consensus       160 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi  214 (368)
T TIGR02818       160 LEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRII  214 (368)
T ss_pred             HHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence            9999999999999999988889999999999999999999999999999995433

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=4e-36  Score=274.24  Aligned_cols=213  Identities=51%  Similarity=0.899  Sum_probs=177.1

Q ss_pred             ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      .+||++++...+.+++++++|.|+|+++||+||+++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~   79 (368)
T cd08300           1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESVGEGVTSVK   79 (368)
T ss_pred             CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEeCCCCccCC
Confidence            36899999888777999999999999999999999999999999999987654 46799999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++.+...|+.|.+|+.++++.|++.....+.|...+|..++. -.|...++..+.|+|+||+.++++.++++|++
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~  158 (368)
T cd08300          80 PGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEISVAKINPE  158 (368)
T ss_pred             CCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccc-cCCcccccccccccceeEEEEchhceEeCCCC
Confidence            99999988888999999999999999987543211222222210100 00000011112359999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++++++.+++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.+
T Consensus       159 l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~  213 (368)
T cd08300         159 APLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASR  213 (368)
T ss_pred             CChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence            9999999999999999998888899999999999999999999999999999953

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=2.8e-36  Score=275.15  Aligned_cols=215  Identities=56%  Similarity=0.967  Sum_probs=176.8

Q ss_pred             ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ++|||+++..+++++++++++.|+|+++|||||+.+++||++|++.+.|..+. ..+|.++|||++|+|+++|+++++|+
T Consensus         1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   79 (369)
T cd08301           1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGIVESVGEGVTDLK   79 (369)
T ss_pred             CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCC-CCCCcccccccceEEEEeCCCCCccc
Confidence            47999999988877999999999999999999999999999999999987653 46789999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCC-CcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G-~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~  179 (256)
                      +||+|+..+...|+.|.+|+.+.++.|.+.......|....+ ..++. ..|...+.....|+|+||++++.+.++++|+
T Consensus        80 ~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~  158 (369)
T cd08301          80 PGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKINP  158 (369)
T ss_pred             cCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccc-cCCcceeeeeccccceeEEEEecccEEECCC
Confidence            999999988889999999999999999885432111111100 00000 0000000001125899999999999999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP  237 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~  237 (256)
                      ++++++++.+++.+.|||+++.+.+++++|++|||+|+|++|++++|+|+..|+.+++
T Consensus       159 ~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi  216 (369)
T cd08301         159 EAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRII  216 (369)
T ss_pred             CCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence            9999999999999999999888889999999999999999999999999999985333

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=2.6e-36  Score=275.06  Aligned_cols=201  Identities=24%  Similarity=0.373  Sum_probs=174.4

Q ss_pred             CCcccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEcc
Q 025173           14 SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG   93 (256)
Q Consensus        14 ~~~~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG   93 (256)
                      ++-.+.|+.++++.+.+....+++.+++.|.|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG   82 (360)
T PLN02586          4 SPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKLG   82 (360)
T ss_pred             ChhhhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEEC
Confidence            455567888999988887666888999999999999999999999999999999887653 4578999999999999999


Q ss_pred             CCCcccCCCCEEeeec-ccCCCCCcccCCCCCCCCCcCccCC----CCCCCCCCCcccccCCCceeeccccccceeeeEE
Q 025173           94 GGVEEVREGDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKD----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV  168 (256)
Q Consensus        94 ~~v~~~~vGd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~  168 (256)
                      ++|++|++||+|+..+ ...|+.|.+|+.|.+++|++.....    ..|...+|                   +|+||++
T Consensus        83 ~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~  143 (360)
T PLN02586         83 KNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYG-------------------GYSDMIV  143 (360)
T ss_pred             CCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCC-------------------ccceEEE
Confidence            9999999999998544 3579999999999999998754310    01222234                   9999999


Q ss_pred             ecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          169 VDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       169 v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++.++++|+++++++|+.+.+.+.|+|+++.+...+++|++|||.|+|++|++++|+||.+|++
T Consensus       144 v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~  209 (360)
T PLN02586        144 VDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK  209 (360)
T ss_pred             EchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            999999999999999999999999999999876667778999999999999999999999999997

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=6.9e-36  Score=272.95  Aligned_cols=210  Identities=44%  Similarity=0.731  Sum_probs=173.2

Q ss_pred             ceeEEEecCCC--------CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccC
Q 025173           23 CRAAISRIPGK--------PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (256)
Q Consensus        23 ~ka~~~~~~g~--------~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~   94 (256)
                      |||+++.++|.        .++++++|.|+|+++||||||.+++||++|++.+.|.++.  .+|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~   78 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR--PLPMALGHEAAGVVVEVGE   78 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC--CCCccCCccceeEEEEeCC
Confidence            79999998763        3899999999999999999999999999999999987653  5789999999999999999


Q ss_pred             CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcE
Q 025173           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (256)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~  174 (256)
                      ++.++++||+|++.+...|+.|.+|+.|.+++|.+.......|...+|..++....+. ..+..+.|+|+||+.++++++
T Consensus        79 ~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~-~~~~~g~G~~aey~~v~~~~~  157 (371)
T cd08281          79 GVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGE-INHHLGVSAFAEYAVVSRRSV  157 (371)
T ss_pred             CCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcc-cccccCcccceeeEEecccce
Confidence            9999999999998777789999999999999998764321122221211111000000 000112359999999999999


Q ss_pred             EEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          175 VKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       175 ~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++|+++++++|+.+.+++.|||+++.+.+++++|++|||.|+|++|++++|+||.+|+.+
T Consensus       158 ~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~  218 (371)
T cd08281         158 VKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQ  218 (371)
T ss_pred             EECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999998888889999999999999999999999999999963

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=8.6e-36  Score=268.39  Aligned_cols=190  Identities=29%  Similarity=0.485  Sum_probs=170.5

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      |||+++.+++. ++++++|.|+|+++||+||+.+++||++|++.+.+.+.....+|.++|||++|+|+++|++|++|++|
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (339)
T cd08239           1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG   79 (339)
T ss_pred             CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence            79999998776 99999999999999999999999999999999877643223468999999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|+..+...|+.|++|+.+++++|.+...  ..|...+|                   +|+||+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------------~~ae~~~v~~~~~~~~P~~~~  138 (339)
T cd08239          80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------------GHAEYMLVPEKTLIPLPDDLS  138 (339)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------------cceeEEEechHHeEECCCCCC
Confidence            999999888999999999999999987543  23333445                   999999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++|+.+++++.|||+++ +.+.+++|++|||+|+|++|++++|+||.+|+++
T Consensus       139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~  190 (339)
T cd08239         139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAED  190 (339)
T ss_pred             HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence            999999999999999986 5678999999999999999999999999999984

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=3.2e-35  Score=269.54  Aligned_cols=213  Identities=51%  Similarity=0.896  Sum_probs=172.2

Q ss_pred             ccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173           17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (256)
Q Consensus        17 ~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v   96 (256)
                      .+....||++++.++++.++++++|.|+|+++||+|||.+++||++|++.+.+..    .+|.++|||++|+|+++|+++
T Consensus         7 ~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~vG~~v   82 (378)
T PLN02827          7 QPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESIGEGV   82 (378)
T ss_pred             CcccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC----CCCeeecccceEEEEEcCCCC
Confidence            3444679999999887669999999999999999999999999999999987752    468899999999999999999


Q ss_pred             cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCC-CCCcccccCCCceeeccccccceeeeEEecCCcEE
Q 025173           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR-DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (256)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~-~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~  175 (256)
                      ++|++||+|++.+...|+.|.+|+.+.+++|++.... ..|... ++..+|. ..|.........|+|+||+.++++.++
T Consensus        83 ~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~~G~~aeyv~v~~~~~~  160 (378)
T PLN02827         83 TEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAV  160 (378)
T ss_pred             cccCCCCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCccccc-ccCcccccccccccceeeEEechhheE
Confidence            9999999999988889999999999999999874210 001000 0000000 000000000012599999999999999


Q ss_pred             EcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          176 KITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++|+++++++++.+.+++.++|+++.+.+++++|++|||+|+|++|++++|+||.+|+..
T Consensus       161 ~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~  220 (378)
T PLN02827        161 KVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQ  220 (378)
T ss_pred             ECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence            999999999999999899999998777889999999999999999999999999999874

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=2.3e-35  Score=268.17  Aligned_cols=204  Identities=36%  Similarity=0.616  Sum_probs=173.8

Q ss_pred             cceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        22 t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      |||++++.+++.+++++++|.|+|+++||+|||.+++||++|++.+.|.++.  .+|.++|||++|+|+++|+++++|++
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~~   78 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND--EFPFLLGHEAAGVVEAVGEGVTDVAP   78 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc--cCCcccccceEEEEEEeCCCCcccCC
Confidence            6999999999988999999999999999999999999999999999887643  57899999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      ||+|++.+...|+.|.+|..++.++|....... .... .+|         .......+.|+|+||+.++++.++++|++
T Consensus        79 GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~-~~~~~~~g---------~~~~~~~~~G~~aey~~v~~~~~~~ip~~  148 (358)
T TIGR03451        79 GDYVVLNWRAVCGQCRACKRGRPWYCFDTHNAT-QKMTLTDG---------TELSPALGIGAFAEKTLVHAGQCTKVDPA  148 (358)
T ss_pred             CCEEEEccCCCCCCChHHhCcCcccCcCccccc-cccccccC---------cccccccccccccceEEEehhheEECCCC
Confidence            999999888899999999999999997532210 0000 001         00000011359999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP  237 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~  237 (256)
                      +++++|+.+++.+.|+|+++.+.+.+++|++|||+|+|++|++++|+||.+|+.+++
T Consensus       149 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi  205 (358)
T TIGR03451       149 ADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKII  205 (358)
T ss_pred             CChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence            999999999999999999888888999999999999999999999999999987433

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=3.8e-35  Score=270.38  Aligned_cols=195  Identities=29%  Similarity=0.393  Sum_probs=163.4

Q ss_pred             cceeEEEecCCCCcEEEEeecCCCC-------CCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccC
Q 025173           22 RCRAAISRIPGKPLVMEEIEVDPPK-------AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (256)
Q Consensus        22 t~ka~~~~~~g~~l~~~~~~~p~~~-------~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~   94 (256)
                      -||++++.++++ ++++++|.|+|+       +|||||||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|+
T Consensus         2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~   78 (393)
T TIGR02819         2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA--PTGLVLGHEITGEVIEKGR   78 (393)
T ss_pred             CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC--CCCccccceeEEEEEEEcC
Confidence            489999999887 999999999874       689999999999999999999887543  5789999999999999999


Q ss_pred             CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCC---CCCCCCCCCcccccCCCceeeccccccceeeeEEecC
Q 025173           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD---NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (256)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~---~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~  171 (256)
                      +|++|++||||++.+...|+.|.+|+.|++++|.+.....   ..|....|     .|          .|+|+||++++.
T Consensus        79 ~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~-----~~----------~G~~aey~~v~~  143 (393)
T TIGR02819        79 DVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG-----GW----------VGGQSEYVMVPY  143 (393)
T ss_pred             ccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC-----CC----------CCceEEEEEech
Confidence            9999999999999888899999999999999998743210   01110000     01          139999999996


Q ss_pred             C--cEEEcCCCCCh----hhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          172 T--HVVKITPDIPL----DIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       172 ~--~~~~~p~~l~~----~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      .  +++++|++++.    ++++.+.+++.++|+++ +++++++|++|||.|+|++|++++|+|+.+|++.
T Consensus       144 ~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~  212 (393)
T TIGR02819       144 ADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAV  212 (393)
T ss_pred             hhCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCce
Confidence            3  79999998754    34667778999999976 5688999999999999999999999999999984

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=1e-34  Score=264.62  Aligned_cols=213  Identities=52%  Similarity=0.936  Sum_probs=176.9

Q ss_pred             ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      +.||++++...+++++++++|.|.++++||+|||.++++|++|++.+.|.++  ..+|.++|||++|+|+++|+++++++
T Consensus         1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~   78 (365)
T cd08277           1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVTNLK   78 (365)
T ss_pred             CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC--CCCCeecccceeEEEEeeCCCCccCC
Confidence            4689999988777799999999999999999999999999999999998765  36789999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++.+...|+.|.+|+.+.+++|++.... ..|...+++.++. ..|.-.....+.|+|+||+.++.+.++++|++
T Consensus        79 ~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~  156 (365)
T cd08277          79 PGDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPA  156 (365)
T ss_pred             CCCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCccccc-cCCcccccccccccceeeEEEchhheEECCCC
Confidence            999999988889999999999999999885431 1222222211110 00000000112358999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP  237 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~  237 (256)
                      +++++++.+.+++.|||+++.+.+++++|++|+|+|+|++|++++|+|+++|+.+++
T Consensus       157 l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi  213 (365)
T cd08277         157 APLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRII  213 (365)
T ss_pred             CCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence            999999999999999999887888999999999999999999999999999986433

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=2.1e-34  Score=259.14  Aligned_cols=166  Identities=30%  Similarity=0.427  Sum_probs=151.6

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++++.+.+  ++++++|.|+|+++||||||.|++||+.|.+.++|..+...++|+++|.|++|+|+++|+.|+.|+
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            789999998877  888999999999999999999999999999999998444356999999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|+... .                        .+  .+|                   +|+||+.+|++.++++|++
T Consensus        81 ~GdrV~~~~-~------------------------~~--~~G-------------------~~AEy~~v~a~~~~~~P~~  114 (326)
T COG0604          81 VGDRVAALG-G------------------------VG--RDG-------------------GYAEYVVVPADWLVPLPDG  114 (326)
T ss_pred             CCCEEEEcc-C------------------------CC--CCC-------------------cceeEEEecHHHceeCCCC
Confidence            999998653 1                        00  233                   9999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++||++++++.|||+++.+..++++|++|||+|+ |++|++++||||+.|+.
T Consensus       115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~  169 (326)
T COG0604         115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGAT  169 (326)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCc
Confidence            9999999999999999999999899999999999987 99999999999999985

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=2e-34  Score=260.52  Aligned_cols=188  Identities=20%  Similarity=0.364  Sum_probs=160.5

Q ss_pred             cccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHc-CCCCC-CCCCCeeeeeeeeEEEEEccCCCc
Q 025173           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR-STQPP-MAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~-g~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      ...+|++++.+++. +++++++.| ++++||||||.++|||++|++.+. |.++. ...+|.++|||++|+|+++  +++
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~   77 (343)
T PRK09880          2 QVKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS   77 (343)
T ss_pred             cccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence            35689999998888 999999987 689999999999999999999875 43321 2357999999999999999  688


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-----CCCCCcccccCCCceeeccccccceeeeEEecCC
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-----PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT  172 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-----~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~  172 (256)
                      +|++||+|+..+..+|+.|.+|+.+.+++|++...   .|.     ..+|                   +|+||++++++
T Consensus        78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~~~~~~G-------------------~~aey~~v~~~  135 (343)
T PRK09880         78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMYFPHVDG-------------------GFTRYKVVDTA  135 (343)
T ss_pred             cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccccCCCCC-------------------ceeeeEEechH
Confidence            99999999998888999999999999999988654   221     1234                   99999999999


Q ss_pred             cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          173 HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       173 ~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      .++++|+++++++++. ..++++||+++ +.....+|++|+|+|+|++|++++|+|+.+|+++
T Consensus       136 ~~~~~P~~l~~~~aa~-~~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~  196 (343)
T PRK09880        136 QCIPYPEKADEKVMAF-AEPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAE  196 (343)
T ss_pred             HeEECCCCCCHHHHHh-hcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence            9999999999987664 45778999986 4556678999999999999999999999999964

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=3.2e-34  Score=258.24  Aligned_cols=186  Identities=24%  Similarity=0.355  Sum_probs=164.6

Q ss_pred             eEEEecCCC----CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           25 AAISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        25 a~~~~~~g~----~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ++++..+|.    .++++++|.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         1 ~~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   79 (329)
T TIGR02822         1 AWEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV-HRPRVTPGHEVVGEVAGRGADAGGFA   79 (329)
T ss_pred             CeeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC-CCCCccCCcceEEEEEEECCCCcccC
Confidence            355666653    3889999999999999999999999999999999997654 34578999999999999999999999


Q ss_pred             CCCEEeeecc-cCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173          101 EGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (256)
Q Consensus       101 vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~  179 (256)
                      +||+|+..+. ..|+.|.+|+.+.+++|++...   .|...+|                   +|+||+.++.+.++++|+
T Consensus        80 ~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~  137 (329)
T TIGR02822        80 VGDRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------------------GYAEYTTVPAAFAYRLPT  137 (329)
T ss_pred             CCCEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------------------cceeEEEeccccEEECCC
Confidence            9999987553 4699999999999999988654   3444455                   999999999999999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++++++.+++.+.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|++
T Consensus       138 ~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~  191 (329)
T TIGR02822       138 GYDDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGAT  191 (329)
T ss_pred             CCCHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCe
Confidence            999999999999999999987 568899999999999999999999999999987

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=3.7e-34  Score=260.07  Aligned_cols=191  Identities=29%  Similarity=0.413  Sum_probs=154.1

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCe-eeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPR-ILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~-~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      |+++++..++....+++.+.|.+.++||+|||.++|||+||++.+.+..+. ...+. ++|||++|+|+++| .++.+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~-~~~~~~i~GHE~~G~V~evG-~~~~~~~   78 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPF-VPPGDIILGHEFVGEVVEVG-VVRGFKV   78 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCC-CCCCCcccCccceEEEEEec-cccCCCC
Confidence            566777766653447777777778999999999999999999999998765 33444 99999999999999 7788999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccC--CCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEE-cC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNK--DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK-IT  178 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~--~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~-~p  178 (256)
                      ||+|++.+..+|+.|.+|+.|.+++|++..+.  ...+...+|                   +|+||+.+|.++++. +|
T Consensus        79 GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G-------------------~~aEyv~vp~~~~~~~~p  139 (350)
T COG1063          79 GDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDG-------------------GFAEYVRVPADFNLAKLP  139 (350)
T ss_pred             CCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCC-------------------ceEEEEEeccccCeecCC
Confidence            99999999999999999999999999965431  111112344                   999999999755555 57


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++ ..+++++..+++++|++........++++|+|+|+|++|++++++|+..|+..
T Consensus       140 d~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~  195 (350)
T COG1063         140 DGI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASV  195 (350)
T ss_pred             CCC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCce
Confidence            888 55556666699999886455566667779999999999999999999999984

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.6e-33  Score=258.08  Aligned_cols=190  Identities=25%  Similarity=0.341  Sum_probs=160.2

Q ss_pred             eEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCE
Q 025173           25 AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDL  104 (256)
Q Consensus        25 a~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~  104 (256)
                      ++++.+.++.+.+.+++.|.|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++||+
T Consensus         9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdr   87 (375)
T PLN02178          9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKVGKNVTKFKEGDR   87 (375)
T ss_pred             EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEECCCCCccCCCCE
Confidence            3444444445888889999999999999999999999999999887643 357899999999999999999999999999


Q ss_pred             Eeeeccc-CCCCCcccCCCCCCCCCcCccCC----CCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173          105 VLPVFQG-DCGECRDCKSPKSNICSKFVNKD----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (256)
Q Consensus       105 V~~~~~~-~c~~c~~~~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~  179 (256)
                      |+..+.. .|+.|.+|+.|.+++|++.....    ..|...+|                   +|+||+.++++.++++|+
T Consensus        88 V~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~~~lP~  148 (375)
T PLN02178         88 VGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQG-------------------GYSDVIVVDHRFVLSIPD  148 (375)
T ss_pred             EEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCC-------------------ccccEEEEchHHeEECCC
Confidence            9865543 69999999999999999864310    01222234                   999999999999999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++++++.+.+...|+|+++.+... .++|++|+|.|+|++|++++|+||++|++
T Consensus       149 ~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~  204 (375)
T PLN02178        149 GLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLR  204 (375)
T ss_pred             CCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCCe
Confidence            99999999999999999998754433 36899999999999999999999999997

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.5e-33  Score=254.97  Aligned_cols=194  Identities=27%  Similarity=0.378  Sum_probs=169.3

Q ss_pred             ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ..++++++..+++++.+++++.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~vG~~v~~~~   86 (357)
T PLN02514          8 KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKFT   86 (357)
T ss_pred             ceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEECCCccccc
Confidence            34899999999988999999999999999999999999999999999887643 35789999999999999999999999


Q ss_pred             CCCEEeeec-ccCCCCCcccCCCCCCCCCcCccCCC----CCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEE
Q 025173          101 EGDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDN----QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (256)
Q Consensus       101 vGd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~----~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~  175 (256)
                      +||+|+..+ ...|+.|.+|+.+.+++|.+.....+    .|...+                   |+|+||++++.+.++
T Consensus        87 ~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~  147 (357)
T PLN02514         87 VGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQ-------------------GGFASAMVVDQKFVV  147 (357)
T ss_pred             CCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCC-------------------CccccEEEEchHHeE
Confidence            999998544 34699999999999999987532100    111123                   399999999999999


Q ss_pred             EcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          176 KITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++|+++++++++.+++++.|||+++.+....++|++|+|+|+|++|++++|+||.+|++
T Consensus       148 ~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~  206 (357)
T PLN02514        148 KIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHH  206 (357)
T ss_pred             ECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCe
Confidence            99999999999999999999999886666678999999999999999999999999987

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=2.6e-33  Score=254.32  Aligned_cols=189  Identities=25%  Similarity=0.379  Sum_probs=154.8

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCC--CCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM--AVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~--~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||+++++..+..++++++|.|+|+++||||||+|++||++|++.+.|.++..  ..+|.++|||++|+|+++|++ ++|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            6899998654339999999999999999999999999999999999875431  246899999999999999999 9999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-CCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~  179 (256)
                      +||+|+..+...|+.|.+|+.+++++|++.... ..|. ..+|                   +|+||++++++.++++|+
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~G-------------------~~aey~~~~~~~~~~~P~  139 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLHG-------------------FMREYFVDDPEYLVKVPP  139 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCCc-------------------cceeEEEeccccEEECCC
Confidence            999999888888999999999999999875421 1121 1233                   999999999999999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHH------HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAW------KVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~------~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++ +. +.+..++.+++.++.      +...+++|++|+|+|+|++|++++|+||.+|++
T Consensus       140 ~~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~  198 (355)
T cd08230         140 SLA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFE  198 (355)
T ss_pred             CCC-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence            999 44 344445555444332      223367899999999999999999999999996

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=6.9e-33  Score=253.54  Aligned_cols=215  Identities=50%  Similarity=0.839  Sum_probs=176.0

Q ss_pred             cccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173           18 GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        18 ~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      .+-.+||++++..++.+++++++|.|++.++||+||+.++++|++|++.+.|.++.  .+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~   80 (373)
T cd08299           3 GKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLVT--PFPVILGHEAAGIVESVGEGVT   80 (373)
T ss_pred             cccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCCC--CCCccccccceEEEEEeCCCCc
Confidence            34567999999888777999999999999999999999999999999999987643  5788999999999999999999


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      .+++||+|++.+..+|+.|.+|+.++++.|++.......|...++..++. -.|...+.....|+|+||+.++.+.++++
T Consensus        81 ~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~e~~~v~~~~~~~l  159 (373)
T cd08299          81 TVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKI  159 (373)
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCcccccccCCCcccceEEecccceeeC
Confidence            99999999998888999999999999999987542100111111100000 00000111111359999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      |+++++++++.+.+++.|||+++.+.+++++|++|+|+|+|++|++++++|+++|+.+
T Consensus       160 P~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~  217 (373)
T cd08299         160 DAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASR  217 (373)
T ss_pred             CCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence            9999999999999999999998888899999999999999999999999999999853

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=4.9e-33  Score=252.09  Aligned_cols=185  Identities=26%  Similarity=0.434  Sum_probs=163.3

Q ss_pred             EEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEE
Q 025173           26 AISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV  105 (256)
Q Consensus        26 ~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V  105 (256)
                      +++++++.+++++++|.|.|+++||+|||.++++|++|++.+.+.+.....+|.++|||++|+|+++|+++..+ +||+|
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV   80 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV   80 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence            56777887789999999999999999999999999999998754432224678999999999999999999887 99999


Q ss_pred             eeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC------
Q 025173          106 LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP------  179 (256)
Q Consensus       106 ~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~------  179 (256)
                      +..+...|+.|.+|+.+++++|.+...   .|...+|                   +|+||+.++.+.++++|+      
T Consensus        81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~ae~~~v~~~~~~~ip~~~~~~~  138 (349)
T TIGR03201        81 IVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQG-------------------GFASHIVVPAKGLCVVDEARLAAA  138 (349)
T ss_pred             EECCCCCCCCChhhhCcCcccCCCCCc---cCcCCCC-------------------cccceEEechHHeEECCccccccc
Confidence            998888999999999999999987544   3333345                   999999999999999999      


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++++++.+.+++.|+|+++ +...+++|++|+|+|+|++|++++|+|+.+|++
T Consensus       139 ~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~  192 (349)
T TIGR03201       139 GLPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA  192 (349)
T ss_pred             CCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence            899999999999999999986 458899999999999999999999999999986

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=1e-32  Score=249.59  Aligned_cols=184  Identities=19%  Similarity=0.241  Sum_probs=151.7

Q ss_pred             cceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC---CCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP---MAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        22 t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~---~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      ..|+++++++++ ++++++|.|. +++||||||.++|||++|++.+.|.++.   ...+|.++|||++|+|+++|..  .
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~   77 (341)
T cd08237           2 INQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--T   77 (341)
T ss_pred             cccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--c
Confidence            457899999987 9999999995 9999999999999999999999987532   1357999999999999998764  7


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      |++||+|+..+...|+ |..|  +..++|.+...   .|...+|                   +|+||+++++++++++|
T Consensus        78 ~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~vP  132 (341)
T cd08237          78 YKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSGYDG-------------------FMQDYVFLPPDRLVKLP  132 (341)
T ss_pred             cCCCCEEEECCCCCch-hccc--chhccCCCcce---eEecCCC-------------------ceEEEEEEchHHeEECC
Confidence            9999999988776676 4455  45678876543   2323345                   99999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHH--hcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCc
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWK--VAEVEEGSTVAIFGLGAVGLSVLIRIHL-KFTRH  235 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~GaG~vG~~aiqla~~-~G~~~  235 (256)
                      +++++++||++. +++++|+++..  .+.+++||+|||+|+|++|++++|+|+. .|+.+
T Consensus       133 ~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~  191 (341)
T cd08237         133 DNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESK  191 (341)
T ss_pred             CCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCc
Confidence            999999887554 88889998754  3457899999999999999999999996 56553

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-32  Score=245.90  Aligned_cols=186  Identities=27%  Similarity=0.462  Sum_probs=161.1

Q ss_pred             ceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||++++++++. +++++.|.|+| +++||+|||.++++|++|++.+.....  ..+|.++|||++|+|+++|+++++|++
T Consensus         1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~v   77 (347)
T PRK10309          1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAVGSGVDDLHP   77 (347)
T ss_pred             CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEeCCCCCCCCC
Confidence            79999998876 99999999997 589999999999999999976432211  236789999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      ||+|++.+...|+.|.+|+.|.+++|.+...   .|...+|                   +|+||+.++++.++++|+++
T Consensus        78 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~  135 (347)
T PRK10309         78 GDAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRDG-------------------GNAEYIVVKRKNLFALPTDM  135 (347)
T ss_pred             CCEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCCC-------------------ccceeEEeehHHeEECcCCC
Confidence            9999999888999999999999999987543   3333445                   99999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++++|+.+. .+.++|++ .+...+++|++|+|+|+|++|++++|+|+.+|++.
T Consensus       136 s~~~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~  187 (347)
T PRK10309        136 PIEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKS  187 (347)
T ss_pred             CHHHhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence            999998774 45667886 46788899999999999999999999999999973

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.8e-31  Score=243.30  Aligned_cols=210  Identities=49%  Similarity=0.883  Sum_probs=179.9

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      +||+++.+++.++++++++.|.++++||+||+.++++|++|++.+.+.++.  .+|.++|||++|+|+++|++++++++|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~--~~~~i~g~e~~G~V~~vG~~v~~~~~G   78 (365)
T cd05279           1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPT--PLPVILGHEGAGIVESIGPGVTTLKPG   78 (365)
T ss_pred             CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCCCC
Confidence            478899888777999999999999999999999999999999999887653  567899999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|++.+...|+.|.+|+.+++++|.........|...+|..+|.. .|.+.++..+.|+|++|+.++.+.++++|++++
T Consensus        79 d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~  157 (365)
T cd05279          79 DKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTC-KGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAP  157 (365)
T ss_pred             CEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeec-cCCccccccccccccceEEecCCceEECCCCCC
Confidence            9999988889999999999999999886654344444444333321 222223333446999999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++++.+.+++.+||+++.+.+++++|++|||+|+|++|++++|+|+.+|+..
T Consensus       158 ~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~  210 (365)
T cd05279         158 LEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASR  210 (365)
T ss_pred             HHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence            99999999999999998888899999999999988999999999999999873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=1.1e-31  Score=243.70  Aligned_cols=194  Identities=28%  Similarity=0.475  Sum_probs=168.6

Q ss_pred             eeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc-----
Q 025173           24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE-----   98 (256)
Q Consensus        24 ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~-----   98 (256)
                      |++++.++++.+++++++.|.|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++..     
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~~~   80 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVALGGGVTTDVAGE   80 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEeCCCccccccCC
Confidence            78999998866999999999999999999999999999999999988763 357899999999999999999986     


Q ss_pred             -cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCC-CCcccccCCCceeeccccccceeeeEEecCC-cEE
Q 025173           99 -VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD-GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT-HVV  175 (256)
Q Consensus        99 -~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~-G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~-~~~  175 (256)
                       |++||+|++.+..+|+.|.+|+.+.++.|.+...   .|...+ |..             ...|+|+||+.++++ .++
T Consensus        81 ~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~~~~-------------~~~g~~a~~~~v~~~~~~~  144 (361)
T cd08231          81 PLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASCDDP-------------HLSGGYAEHIYLPPGTAIV  144 (361)
T ss_pred             ccCCCCEEEEcccCCCCCChhHhCcCccccccchh---ccccccccCC-------------CCCcccceEEEecCCCceE
Confidence             9999999999888999999999999999988654   222110 000             001499999999986 799


Q ss_pred             EcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          176 KITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++|++++.++++.+++++.|||+++.+....++|++|||+|+|++|++++|+|+.+|+.
T Consensus       145 ~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~  203 (361)
T cd08231         145 RVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGAR  203 (361)
T ss_pred             ECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            99999999999998899999999987766677999999999999999999999999994

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.98  E-value=4.4e-31  Score=238.94  Aligned_cols=187  Identities=30%  Similarity=0.469  Sum_probs=163.4

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCC-CC---------CCCCCeeeeeeeeEEEEEc
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ-PP---------MAVFPRILGHEAVGVVESV   92 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~~---------~~~~p~~~G~e~vG~Vv~v   92 (256)
                      ||++++.++++ +++++++.|+|+++||+||+.++++|++|++.+.+.. ..         ...+|.++|||++|+|+++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   79 (351)
T cd08233           1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV   79 (351)
T ss_pred             CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence            79999998876 9999999999999999999999999999998775431 11         0236899999999999999


Q ss_pred             cCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccceeeeEEecC
Q 025173           93 GGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (256)
Q Consensus        93 G~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~  171 (256)
                      |+++++|++||+|+..+...|+.|.+|+.+.+++|.+...   .|.. .+|                   +|+||+.++.
T Consensus        80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~a~~~~~~~  137 (351)
T cd08233          80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGGG-------------------GFAEYVVVPA  137 (351)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCCC-------------------ceeeEEEech
Confidence            9999999999999998888999999999999999986542   2221 134                   9999999999


Q ss_pred             CcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          172 THVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +.++++|+++++++++.+ .++.|||+++ +.+++++|++|+|+|+|++|++++|+|+.+|++
T Consensus       138 ~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~  198 (351)
T cd08233         138 YHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGAS  198 (351)
T ss_pred             HHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            999999999999998876 5778999987 788999999999999999999999999999995

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.98  E-value=6.5e-31  Score=236.40  Aligned_cols=188  Identities=30%  Similarity=0.493  Sum_probs=167.9

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      ||++++++++..++++++|.|+++++||+||+.++++|++|++.+.|..+. ..+|.++|||++|+|+++|+++.++++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~vG~~v~~~~~G   79 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAVGEGVSRWKVG   79 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEECCCCccCCCC
Confidence            799999998656999999999999999999999999999999999887643 3568899999999999999999999999


Q ss_pred             CEEeeec-ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          103 DLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       103 d~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      |+|++.+ ...|+.|.+|+.|+.+.|.+...   .|...+|                   +|++|+.++.+.++++|+++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~g-------------------~~a~~~~v~~~~~~~lp~~~  137 (333)
T cd08296          80 DRVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRDG-------------------GYAEYMLAPAEALARIPDDL  137 (333)
T ss_pred             CEEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccCC-------------------cceeEEEEchhheEeCCCCC
Confidence            9998754 46799999999999999987654   3333334                   89999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++++.+++++.|||+++. ..++.++++|||+|+|++|++++|+|+.+|+.
T Consensus       138 ~~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~  189 (333)
T cd08296         138 DAAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFR  189 (333)
T ss_pred             CHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCCe
Confidence            99999999999999999874 45899999999999999999999999999987

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK10083 putative oxidoreductase; Provisional

Probab=99.98  E-value=5.6e-31  Score=236.72  Aligned_cols=187  Identities=30%  Similarity=0.540  Sum_probs=165.2

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      ||++++.+++. +++++++.|.|+++||+||+.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++..+++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G   78 (339)
T PRK10083          1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF-AKYPRVIGHEFFGVIDAVGEGVDAARIG   78 (339)
T ss_pred             CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc-CCCCcccccceEEEEEEECCCCccCCCC
Confidence            78999998886 999999999999999999999999999999999887654 3578999999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|+..+...|+.|.+|..+++++|.+...   .+...+|                   +|+||+.++.+.++++|++++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~ip~~~~  136 (339)
T PRK10083         79 ERVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHRDG-------------------GFSEYAVVPAKNAHRIPDAIA  136 (339)
T ss_pred             CEEEEccccCCCCCccccCcCcccCCCCce---EEEccCC-------------------cceeeEEechHHeEECcCCCC
Confidence            999998888899999999999999976543   2222234                   899999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCc
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHL-KFTRH  235 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~-~G~~~  235 (256)
                      +++++ +...+.++|. +.+.+++++|++|+|+|+|++|++++|+|+. +|+..
T Consensus       137 ~~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~  188 (339)
T PRK10083        137 DQYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKA  188 (339)
T ss_pred             HHHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCE
Confidence            98876 4457788886 5678899999999999999999999999996 59874

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.98  E-value=6.9e-31  Score=236.07  Aligned_cols=190  Identities=31%  Similarity=0.460  Sum_probs=172.0

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++.+++.++++.+.+.|+++++||+||+.++++|++|++.+.|.++.  ...+|.++|+|++|+|+++|+++.+|+
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            789999988777999999999999999999999999999999999887652  345688999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++.....|+.|..|..|..++|++...   .|...+|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~P~~  138 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-------------------GFAEYLLVPSRRLVKLPRG  138 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-------------------cceeeEEecHHHeEECCCC
Confidence            99999999888899999999999999999887   4554455                   9999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKV-AEVEEGSTVAIFGLGAVGLSVLIRIHLKF-TR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~GaG~vG~~aiqla~~~G-~~  234 (256)
                      +++++++.+++.+.|||+++.+. ..+.++++|||+|+|.+|++++|+|+.+| ..
T Consensus       139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~  194 (340)
T cd05284         139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPAT  194 (340)
T ss_pred             CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCc
Confidence            99999999999999999987665 46889999999999889999999999999 45

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.98  E-value=6.9e-31  Score=239.47  Aligned_cols=212  Identities=36%  Similarity=0.707  Sum_probs=174.0

Q ss_pred             ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ++|||+++.+++.++++++.+.|++.++||+||+.++++|++|++.+.|.++.  .+|.++|||++|+|+++|+++.+|+
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~~~~   78 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPT--PLPAVLGHEGAGVVEAVGSAVTGLK   78 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCC
Confidence            57999999987777999999999999999999999999999999999887653  4688999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceee-ccccccceeeeEEecCCcEEEcCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIH-NVLNVSSFTEYTVVDVTHVVKITP  179 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~-~~~~~g~~aey~~v~~~~~~~~p~  179 (256)
                      +||+|++.+. .|+.|.+|+.++.++|.+.......+...+|...+...+|-+++ .....|+|++|+.++.+.++++|+
T Consensus        79 ~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~  157 (365)
T cd08278          79 PGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK  157 (365)
T ss_pred             CCCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence            9999998764 79999999999999998654322222222220000000000000 011235999999999999999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++++++++.+++++.||+.++.+.+.+++|++|+|+|+|++|++++|+|+..|+.+
T Consensus       158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~  213 (365)
T cd08278         158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTT  213 (365)
T ss_pred             CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence            99999999999999999998888889999999999988999999999999999974

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.97  E-value=3.1e-31  Score=227.34  Aligned_cols=195  Identities=23%  Similarity=0.354  Sum_probs=174.6

Q ss_pred             cCCCcccccccceeEEEecCCCC---cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEE
Q 025173           12 NASSTAGKIIRCRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV   88 (256)
Q Consensus        12 ~~~~~~~~~~t~ka~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~   88 (256)
                      .++++..++...|++++.++|+|   ++++++++|....++|+||.+|+.||++|+..++|.||..+.+|.+-|.|++|+
T Consensus         9 ~~ssa~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~e   88 (354)
T KOG0025|consen    9 SSSSASQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGE   88 (354)
T ss_pred             ecccccccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEE
Confidence            44555567888999999999998   778889999888888999999999999999999999999899999999999999


Q ss_pred             EEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEE
Q 025173           89 VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV  168 (256)
Q Consensus        89 Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~  168 (256)
                      |+.+|++++.|++||.|+.....                                                .|+|++|.+
T Consensus        89 Vv~vGs~vkgfk~Gd~VIp~~a~------------------------------------------------lGtW~t~~v  120 (354)
T KOG0025|consen   89 VVAVGSNVKGFKPGDWVIPLSAN------------------------------------------------LGTWRTEAV  120 (354)
T ss_pred             EEEecCCcCccCCCCeEeecCCC------------------------------------------------CccceeeEe
Confidence            99999999999999999865431                                                359999999


Q ss_pred             ecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173          169 VDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHILPTLILMS  247 (256)
Q Consensus       169 v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~~~~v~~~  247 (256)
                      .+++.++++++.++.+.||++..+.+|||+.|.+.-++.+||+|+..|| +++|++.+|+||+.|++ ++.+.|+.-...
T Consensus       121 ~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gik-tinvVRdR~~ie  199 (354)
T KOG0025|consen  121 FSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIK-TINVVRDRPNIE  199 (354)
T ss_pred             ecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcc-eEEEeecCccHH
Confidence            9999999999999999999999999999999999999999999999999 99999999999999998 777777775556


Q ss_pred             chhhhhhc
Q 025173          248 EVQEMYSQ  255 (256)
Q Consensus       248 ~~~~~~~~  255 (256)
                      |..+.++.
T Consensus       200 el~~~Lk~  207 (354)
T KOG0025|consen  200 ELKKQLKS  207 (354)
T ss_pred             HHHHHHHH
Confidence            66555543

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.97  E-value=1.4e-30  Score=235.65  Aligned_cols=191  Identities=26%  Similarity=0.305  Sum_probs=167.0

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      ||++++.+++. +++++.+.|.+.++||+||+.++++|++|++.+.+.++. ..+|.++|||++|+|+++|++++++++|
T Consensus         1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~vG~~v~~~~~G   78 (351)
T cd08285           1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEVGSEVKDFKPG   78 (351)
T ss_pred             CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEecCCcCccCCC
Confidence            79999999886 888999999999999999999999999999998887644 4568999999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITPD  180 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~~  180 (256)
                      |+|++.+..+|+.|..|..++.+.|.+.......+...+|                   +|+||+.++.+  .++++|++
T Consensus        79 d~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g-------------------~~~~y~~v~~~~~~~~~lP~~  139 (351)
T cd08285          79 DRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDG-------------------VFAEYFHVNDADANLAPLPDG  139 (351)
T ss_pred             CEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCc-------------------ceeEEEEcchhhCceEECCCC
Confidence            9999887778999999999999999874321111112233                   99999999864  89999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++++++.++..+.|||++ .+.+.+++|++|||+|+|++|++++|+|+.+|+..
T Consensus       140 ~~~~~aa~~~~~~~ta~~~-~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~  193 (351)
T cd08285         140 LTDEQAVMLPDMMSTGFHG-AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGR  193 (351)
T ss_pred             CCHHHhhhhccchhhHHHH-HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence            9999999998899999998 47789999999999988999999999999999963

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.97  E-value=3.7e-30  Score=236.46  Aligned_cols=206  Identities=29%  Similarity=0.369  Sum_probs=169.3

Q ss_pred             ceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      |||+++.+++. +++++++.|.| +++||+||+.+++||++|++.+.|.++. .++|.++|||++|+|+++|+++..+++
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~   78 (386)
T cd08283           1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEVGPEVRNLKV   78 (386)
T ss_pred             CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEeCCCCCCCCC
Confidence            78999998866 99999999998 4999999999999999999999998765 457899999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCC-CCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD-NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKIT  178 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~-~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p  178 (256)
                      ||+|++.+...|+.|.+|+.+.+++|++..... ..+  .+| ++..++.|...-.....|+|+||+.++.+  .++++|
T Consensus        79 Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp  155 (386)
T cd08283          79 GDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAK--LYG-HAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIP  155 (386)
T ss_pred             CCEEEEcCcCCCCCChhhcCCCcccCCCccccccccc--ccc-cccccccccccccCCCCCeeEEEEEcccccCeEEECC
Confidence            999999888889999999999999998754321 000  000 00000000000000113599999999987  899999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++++|+.++..+.|||+++ +.+++.+|++|+|+|+|++|++++++|++.|+.
T Consensus       156 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~  210 (386)
T cd08283         156 DDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAE  210 (386)
T ss_pred             CCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            9999999999999999999987 888999999999999899999999999999985

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.97  E-value=3.7e-30  Score=230.75  Aligned_cols=188  Identities=29%  Similarity=0.454  Sum_probs=170.8

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      ||++++..+++++++++.|.|.++++||+||+.++++|++|++...|.++. ..+|.++|||++|+|+++|+++..+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~~~G   79 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEVGENVKGFKPG   79 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEeCCCCccCCCC
Confidence            789999999888999999999999999999999999999999999887654 4568899999999999999999889999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|++.....|+.|.+|..+.++.|+....   .|...+|                   +|++|+.++.+.++++|++++
T Consensus        80 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~  137 (334)
T PRK13771         80 DRVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELDG-------------------FFAEYAKVKVTSLVKVPPNVS  137 (334)
T ss_pred             CEEEECCCCCCcCChhhcCCCcccCccccc---cccccCc-------------------eeeeeeecchhceEECCCCCC
Confidence            999998878999999999999999988654   3333344                   999999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++.+++.+.+||+++.+. .++++++|+|+|+ |.+|++++|+|+.+|++
T Consensus       138 ~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~  189 (334)
T PRK13771        138 DEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGAK  189 (334)
T ss_pred             HHHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCCE
Confidence            999999999999999987555 8999999999998 99999999999999987

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=7.8e-30  Score=227.45  Aligned_cols=188  Identities=37%  Similarity=0.618  Sum_probs=169.4

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      ||++++..++..+.++++|.|.+.++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|++++.+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~G   79 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEVGEGVERFKPG   79 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEECCCCccCCCC
Confidence            689999875555999999999999999999999999999999999887664 4568899999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|++.....|+.|.+|+.+++++|.+...   .|....|                   +|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~  137 (332)
T cd08259          80 DRVILYYYIPCGKCEYCLSGEENLCRNRAE---YGEEVDG-------------------GFAEYVKVPERSLVKLPDNVS  137 (332)
T ss_pred             CEEEECCCCCCcCChhhhCCCcccCCCccc---cccccCC-------------------eeeeEEEechhheEECCCCCC
Confidence            999999888999999999999999987522   3333344                   999999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++.+++++.|||+++.. +.+.++++++|+|+ |++|++++++++..|++
T Consensus       138 ~~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~  189 (332)
T cd08259         138 DESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGAR  189 (332)
T ss_pred             HHHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCe
Confidence            99999999999999998766 88999999999998 99999999999999988

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.97  E-value=4.8e-30  Score=231.00  Aligned_cols=190  Identities=32%  Similarity=0.440  Sum_probs=168.9

Q ss_pred             ceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||++++.+++. +++.+.|.|.| .++||+||+.++++|++|++.+.|.++. ..+|.++|+|++|+|+++|+++.++++
T Consensus         1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~   78 (347)
T cd05278           1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEVGSDVKRLKP   78 (347)
T ss_pred             CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEECCCccccCC
Confidence            68999998877 88999999999 8999999999999999999999888765 566899999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP  179 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~  179 (256)
                      ||+|++.+...|+.|.+|..+.+++|.+.......+...+|                   +|++|++++.+  .++++|+
T Consensus        79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~  139 (347)
T cd05278          79 GDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDG-------------------GQAEYVRVPYADMNLAKIPD  139 (347)
T ss_pred             CCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCC-------------------eeeEEEEecchhCeEEECCC
Confidence            99999988889999999999999999875432111222233                   99999999987  8999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++++++.+++++.|||+++ +..++++|++|||.|+|++|++++|+|+.+|..
T Consensus       140 ~~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~  193 (347)
T cd05278         140 GLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAA  193 (347)
T ss_pred             CCCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            999999999999999999987 778899999999988899999999999999974

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=2.1e-30  Score=218.92  Aligned_cols=178  Identities=27%  Similarity=0.300  Sum_probs=161.6

Q ss_pred             ccccceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173           19 KIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v   96 (256)
                      .|+..|.+++++.|..  +++++.|.|+|.++|.+||..|+|+|+.|++.++|.+.. ...|++||.|++|+|+++|+.|
T Consensus         5 ~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~-~plPytpGmEaaGvVvAvG~gv   83 (336)
T KOG1197|consen    5 SPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDP-APLPYTPGMEAAGVVVAVGEGV   83 (336)
T ss_pred             CCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCC-CCCCcCCCcccceEEEEecCCc
Confidence            4778999999998877  889999999999999999999999999999999999964 6899999999999999999999


Q ss_pred             cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (256)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~  176 (256)
                      +++++||+|.-...                                                 +|.|+|+..+|...+++
T Consensus        84 tdrkvGDrVayl~~-------------------------------------------------~g~yaee~~vP~~kv~~  114 (336)
T KOG1197|consen   84 TDRKVGDRVAYLNP-------------------------------------------------FGAYAEEVTVPSVKVFK  114 (336)
T ss_pred             cccccccEEEEecc-------------------------------------------------chhhheeccccceeecc
Confidence            99999999975432                                                 23999999999999999


Q ss_pred             cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCccceecceeeEeechhhhhh
Q 025173          177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYS  254 (256)
Q Consensus       177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~~  254 (256)
                      +|+.+++++||++...+.|||.-+.+..++++|++|||+.| |++|++++|++|+.|+.        +|......|+++
T Consensus       115 vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~--------tI~~asTaeK~~  185 (336)
T KOG1197|consen  115 VPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAH--------TIATASTAEKHE  185 (336)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcE--------EEEEeccHHHHH
Confidence            99999999999999999999998888889999999999976 99999999999999998        566666666554

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.5e-29  Score=228.10  Aligned_cols=189  Identities=33%  Similarity=0.542  Sum_probs=170.6

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      |||+++.+++.++++++.+.|.+.++||+||+.++++|++|+..+.|.++. ..+|.++|+|++|+|+++|+++..|++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~~~~~~~G   79 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSRWRVG   79 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEECCCCccCCCC
Confidence            799999988877999999999999999999999999999999999888664 4568899999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITPD  180 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~~  180 (256)
                      |+|++.+...|+.|.+|..|+.++|.+...   .+...+|                   +|++|+.++..  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~iP~~  137 (345)
T cd08260          80 DRVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHPG-------------------SFAEYVAVPRADVNLVRLPDD  137 (345)
T ss_pred             CEEEECCCCCCCCCccccCcCcccCCCCcc---cccCCCC-------------------cceeEEEcccccCceEECCCC
Confidence            999986667899999999999999998653   2332244                   89999999874  89999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++++.++..+.|||+++.+.+++.++++|+|+|+|++|++++|+|+..|..
T Consensus       138 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~  191 (345)
T cd08260         138 VDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGAR  191 (345)
T ss_pred             CCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence            999999999999999999987888999999999999999999999999999987

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.97  E-value=9.9e-30  Score=228.35  Aligned_cols=187  Identities=28%  Similarity=0.455  Sum_probs=166.4

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      ||++++++++....+++.|.|.+.++||+||+.++++|++|++.+.|.++.  ..|.++|||++|+|+++|+++..|++|
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~~G   78 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEVGPGVTSLKVG   78 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEECCCCccCCCC
Confidence            799999998875448999999999999999999999999999999887643  346789999999999999999999999


Q ss_pred             CEEeeec-ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          103 DLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       103 d~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      |+|++.+ ...|+.|..|..+..++|.+...   .|...+|                   +|+||+.++.+.++++|+++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~  136 (338)
T PRK09422         79 DRVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------------GMAEQCIVTADYAVKVPEGL  136 (338)
T ss_pred             CEEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------------cceeEEEEchHHeEeCCCCC
Confidence            9998754 45799999999999999987653   3444455                   99999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCC
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLK-FTR  234 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~-G~~  234 (256)
                      ++++++.++..+.|||+++ +.+++++|++|||+|+|++|++++++|+.. |++
T Consensus       137 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~  189 (338)
T PRK09422        137 DPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAK  189 (338)
T ss_pred             CHHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCe
Confidence            9999999999999999986 788999999999999999999999999984 887

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.3e-29  Score=229.29  Aligned_cols=188  Identities=29%  Similarity=0.458  Sum_probs=164.4

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCC--------CCCCCCeeeeeeeeEEEEEccC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP--------PMAVFPRILGHEAVGVVESVGG   94 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~--------~~~~~p~~~G~e~vG~Vv~vG~   94 (256)
                      ||++++.+++. +++++++.|++.++||+||+.++++|++|++.+.|...        ....+|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~   79 (350)
T cd08256           1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE   79 (350)
T ss_pred             CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence            78999998877 99999999999999999999999999999999887631        1114677899999999999999


Q ss_pred             CCc--ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC--CCCCCcccccCCCceeeccccccceeeeEEec
Q 025173           95 GVE--EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM--PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD  170 (256)
Q Consensus        95 ~v~--~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~--~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~  170 (256)
                      .++  +|++||+|+..+...|+.|+.|+.+..++|.....   .|.  ..+|                   +|++|+.++
T Consensus        80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~g-------------------~~~~~~~~~  137 (350)
T cd08256          80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQNNVNG-------------------GMAEYMRFP  137 (350)
T ss_pred             CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeeccCCCC-------------------cceeeEEcc
Confidence            998  89999999999999999999999999999975321   222  1234                   999999999


Q ss_pred             CC-cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          171 VT-HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       171 ~~-~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++ .++++|+++++++++.+ .++.|+|+++ +.+++++|++|+|.|+|++|++++|+|+++|+..
T Consensus       138 ~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~  201 (350)
T cd08256         138 KEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKK  201 (350)
T ss_pred             cccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence            87 57899999999999988 7889999986 8889999999999878999999999999999874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.97  E-value=3e-29  Score=228.31  Aligned_cols=209  Identities=43%  Similarity=0.702  Sum_probs=172.3

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      |||+++..++.++++++++.|+++++||+||+.++++|+.|.+.+.|.++.  .+|.++|+|++|+|+++|+++..+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA--PLPAVLGHEGAGVVEEVGPGVTGVKPG   78 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCC--CCCccccccceEEEEEeCCCccccCCC
Confidence            799999998777999999999999999999999999999999999887763  567899999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|++.+...|+.|.+|.++..+.|.+..... .|...+|..++. ..|-+.......|+|++|+.++.+.++++|++++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  156 (363)
T cd08279          79 DHVVLSWIPACGTCRYCSRGQPNLCDLGAGIL-GGQLPDGTRRFT-ADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIP  156 (363)
T ss_pred             CEEEECCCCCCCCChhhcCCCcccCccccccc-ccccCCCccccc-ccCccccccccCccceeeEEeccccEEECCCCCC
Confidence            99999999999999999999999997642100 000000000000 0000000011235999999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++++.+++++.|||.++.+.+++.++++|+|+|+|++|++++++|+.+|+.+
T Consensus       157 ~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~  209 (363)
T cd08279         157 LDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASR  209 (363)
T ss_pred             hHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence            99999999999999999888899999999999988999999999999999863

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=3.2e-29  Score=223.92  Aligned_cols=187  Identities=27%  Similarity=0.378  Sum_probs=164.8

Q ss_pred             ceeEEEecCC-CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||++++..++ ..+++++.+.|+++++||+||+.++++|++|++.+.+.. . ..+|.++|||++|+|+++|+++.+|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~-~-~~~~~~~g~e~~G~v~~vG~~v~~~~~   78 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK-V-KPMPHIPGAEFAGVVEEVGDHVKGVKK   78 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCC-C-CCCCeecccceeEEEEEECCCCCCCCC
Confidence            6899987766 348888888888999999999999999999999887532 1 245789999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      ||+|++.+...|+.|.+|+.|++++|.+..+   .+...+|                   +|++|+.++.+.++++|+++
T Consensus        79 Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~  136 (325)
T cd08264          79 GDRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSNG-------------------GYAEYIVVPEKNLFKIPDSI  136 (325)
T ss_pred             CCEEEECCCcCCCCChhhcCCCccccCccce---eeccCCC-------------------ceeeEEEcCHHHceeCCCCC
Confidence            9999998888999999999999999987544   3333344                   89999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++++.+++++.+||+++. .+++++|++|+|+|+ |++|++++++|+++|++
T Consensus       137 ~~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~  189 (325)
T cd08264         137 SDELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGAE  189 (325)
T ss_pred             CHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCe
Confidence            99999999999999999875 489999999999998 99999999999999987

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.97  E-value=2.4e-29  Score=231.27  Aligned_cols=195  Identities=19%  Similarity=0.174  Sum_probs=166.9

Q ss_pred             cccccceeEEEec--CCCC---cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC---------CCCCCeeeee
Q 025173           18 GKIIRCRAAISRI--PGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP---------MAVFPRILGH   83 (256)
Q Consensus        18 ~~~~t~ka~~~~~--~g~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~---------~~~~p~~~G~   83 (256)
                      ..|.+||++++..  .+.+   ++++++|.|.++++||+||+.+++||++|++.+.+....         ....+.++||
T Consensus         8 ~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~   87 (393)
T cd08246           8 VVPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGS   87 (393)
T ss_pred             cCchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCcccccc
Confidence            4688999999863  3322   788999999999999999999999999999988775110         0112358999


Q ss_pred             eeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccc
Q 025173           84 EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSS  162 (256)
Q Consensus        84 e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~  162 (256)
                      |++|+|+++|++++.+++||+|++.+...|+.|..|..+..++|.....   .|.. .+|                   +
T Consensus        88 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~g-------------------~  145 (393)
T cd08246          88 DASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNYG-------------------S  145 (393)
T ss_pred             ceEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCCC-------------------c
Confidence            9999999999999999999999999888899999999999999986543   3321 233                   9


Q ss_pred             eeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHh--cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          163 FTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKV--AEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       163 ~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      |++|+.++...++++|+++++++++.+.+++.|||+++...  +++++|++|+|+|+ |++|++++++|+.+|+.
T Consensus       146 ~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~  220 (393)
T cd08246         146 FAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGAN  220 (393)
T ss_pred             ceeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCe
Confidence            99999999999999999999999999999999999987654  78899999999998 99999999999999998

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=4.8e-29  Score=223.10  Aligned_cols=188  Identities=33%  Similarity=0.552  Sum_probs=168.5

Q ss_pred             ceeEEEecCCC----CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           23 CRAAISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        23 ~ka~~~~~~g~----~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      ||++++.+++.    .+++++.+.|.++++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~   79 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVTR   79 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEECCCCCC
Confidence            78999998883    4888888888899999999999999999999999887764 456889999999999999999999


Q ss_pred             cCCCCEEeeec-ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           99 VREGDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        99 ~~vGd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      +++||+|++.+ ...|+.|.+|+.+.+++|+...+   .|...+|                   +|++|+.++.+.++++
T Consensus        80 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~l  137 (329)
T cd08298          80 FSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------------------GYAEYMVADERFAYPI  137 (329)
T ss_pred             CcCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------------------ceEEEEEecchhEEEC
Confidence            99999998754 35689999999999999987765   3443445                   8999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      |+++++.+++.+.+++.|||+++ +.++++++++|+|+|+|++|++++++|+..|++
T Consensus       138 p~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~  193 (329)
T cd08298         138 PEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGAE  193 (329)
T ss_pred             CCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCe
Confidence            99999999999999999999987 889999999999999999999999999999987

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.97  E-value=2.4e-29  Score=227.34  Aligned_cols=192  Identities=31%  Similarity=0.477  Sum_probs=169.5

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC-----------CCCCCeeeeeeeeEEEEE
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-----------MAVFPRILGHEAVGVVES   91 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-----------~~~~p~~~G~e~vG~Vv~   91 (256)
                      ||++++..++.+++++++|.|+++++||+||+.++++|++|++.+.|.++.           ...+|.++|||++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            799999988887999999999999999999999999999999999886541           124567899999999999


Q ss_pred             ccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC
Q 025173           92 VGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (256)
Q Consensus        92 vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~  171 (256)
                      +|++++++++||+|++.+...|+.|.+|.++.+++|.+...   .|....|                   +|++|+.++.
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~  138 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIFQDG-------------------GYAEYVIVPH  138 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeeeccC-------------------cceeeEEecH
Confidence            99999999999999999888999999999999999977543   2222333                   8999999999


Q ss_pred             CcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173          172 THVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHT  236 (256)
Q Consensus       172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~  236 (256)
                      +.++++|+++++++++.+.+.+.|||+++.+...+.++++|+|+|+|++|++++|+|+..|++++
T Consensus       139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v  203 (350)
T cd08240         139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANI  203 (350)
T ss_pred             HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeE
Confidence            99999999999999999999999999988766667789999999889999999999999999643

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.97  E-value=3.5e-29  Score=231.81  Aligned_cols=178  Identities=21%  Similarity=0.261  Sum_probs=144.9

Q ss_pred             ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhH-cCCCCC-----CCCCCeeeeeeeeEEEEEccC
Q 025173           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW-RSTQPP-----MAVFPRILGHEAVGVVESVGG   94 (256)
Q Consensus        21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~-~g~~~~-----~~~~p~~~G~e~vG~Vv~vG~   94 (256)
                      |+||++++.+++. ++++++|.|+|+++||+|||.++|||++|++.+ .|....     ...+|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            5699999999987 999999999999999999999999999999976 454211     024788999999999999999


Q ss_pred             CCc-ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC-
Q 025173           95 GVE-EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT-  172 (256)
Q Consensus        95 ~v~-~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~-  172 (256)
                      +|+ +|++||+|+..+...|+.|..|. +             .|...+|                   +|+||++++.+ 
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~-------------~g~~~~G-------------------~~aey~~v~~~~  126 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCP-G-------------YSYTYPG-------------------GLATYHIIPNEV  126 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCC-C-------------ccccCCC-------------------cceEEEEecHHh
Confidence            998 69999999998887888887662 1             2222345                   99999999986 


Q ss_pred             ---cEEEcCCCCChhhhhhc-h--hhHHHHHHHH--------HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCC
Q 025173          173 ---HVVKITPDIPLDIACLL-S--CGVSTGLGAA--------WKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFT  233 (256)
Q Consensus       173 ---~~~~~p~~l~~~~aa~l-~--~~~~ta~~~l--------~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~  233 (256)
                         .++++|+++++++|+.+ +  +. .+++.++        .+++++++|++|+|+|+ |++|++++|+|+.+|+
T Consensus       127 ~~~~~~~lP~~l~~~~aal~epl~~~-~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~  201 (410)
T cd08238         127 MEQDCLLIYEGDGYAEASLVEPLSCV-IGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPI  201 (410)
T ss_pred             ccCCeEECCCCCCHHHHhhcchHHHH-HHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhccc
Confidence               68999999999998865 2  22 2234332        35678999999999985 9999999999999864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.97  E-value=9.4e-29  Score=226.19  Aligned_cols=197  Identities=28%  Similarity=0.415  Sum_probs=164.2

Q ss_pred             ceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||++++.+++. ++++++|.|++ +++||+||+.++++|++|++.+.|.++.  .+|.++|||++|+|+++|+.+..+++
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~--~~p~~~g~e~~G~V~~vG~~v~~~~~   77 (375)
T cd08282           1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGA--EPGLVLGHEAMGEVEEVGSAVESLKV   77 (375)
T ss_pred             CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCC--CCCceeccccEEEEEEeCCCCCcCCC
Confidence            68999988875 99999999996 7999999999999999999999887763  56899999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP  179 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~  179 (256)
                      ||+|++.+...|+.|.+|..++.+.|.+....  .+...+|....          ....|+|+||+.++.+  .++++|+
T Consensus        78 Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~g~~a~y~~v~~~~~~~~~lP~  145 (375)
T cd08282          78 GDRVVVPFNVACGRCRNCKRGLTGVCLTVNPG--RAGGAYGYVDM----------GPYGGGQAEYLRVPYADFNLLKLPD  145 (375)
T ss_pred             CCEEEEeCCCCCCCCHHHHCcCcccCCCCCcc--ccccccccccc----------CCCCCeeeeEEEeecccCcEEECCC
Confidence            99999988889999999999999999763211  00000000000          0001399999999975  8999999


Q ss_pred             CCChh---hhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          180 DIPLD---IACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       180 ~l~~~---~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++++   +++.+.+.+.|||+++ +.+++.+|++|+|.|+|++|++++|+|++.|+.+
T Consensus       146 ~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~  203 (375)
T cd08282         146 RDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASR  203 (375)
T ss_pred             CCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence            99998   5677888999999987 8889999999999988999999999999999853

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.97  E-value=1.1e-28  Score=222.59  Aligned_cols=189  Identities=30%  Similarity=0.446  Sum_probs=167.3

Q ss_pred             ceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||++++.+++. +++++.+.|+| .++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++..+++
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~v~~~~~   78 (345)
T cd08286           1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT-VTPGRILGHEGVGVVEEVGSAVTNFKV   78 (345)
T ss_pred             CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC-CCCCceecccceEEEEEeccCccccCC
Confidence            78999998887 99999999986 8999999999999999999999998764 345889999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP  179 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~  179 (256)
                      ||+|++.+...|+.|.+|..+.++.|......  .|...+|                   +|++|+.++.+  .++++|+
T Consensus        79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-------------------~~~~~~~v~~~~~~~~~lp~  137 (345)
T cd08286          79 GDRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLIDG-------------------TQAEYVRIPHADNSLYKLPE  137 (345)
T ss_pred             CCEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccCC-------------------eeeeEEEcccccCceEECCC
Confidence            99999988888999999999999999765331  1222233                   99999999987  8999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++.++++.+.+.+.|||+++.+.+++.+|++|||.|+|++|.+++|+|+.+|..
T Consensus       138 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~  192 (345)
T cd08286         138 GVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPS  192 (345)
T ss_pred             CCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            9999999999999999999877888999999999999999999999999999954

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.1e-28  Score=219.89  Aligned_cols=190  Identities=26%  Similarity=0.409  Sum_probs=167.9

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++...+.+  +.+++.+.|.+.+++|+||+.++++|++|++.+.|.++....+|.++|||++|+|+++|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            688998844432  777788888889999999999999999999999887653345688999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++.+...|+.|.+|..+.+++|++...   .|....|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~~~~~~~~~~~~p~~  138 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVDG-------------------GYAEYVAVPARNLLPIPDN  138 (342)
T ss_pred             CCCEEEEccccccccchhhccccccccccccc---cccccCc-------------------ceeEEEEechHHceeCCCC
Confidence            99999999999999999999999999987533   3333344                   8999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++.+++++.+||+++.+..++.++++|+|+|+ +.+|++++++++..|++
T Consensus       139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~  193 (342)
T cd08266         139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGAT  193 (342)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCE
Confidence            9999999999999999999888899999999999998 79999999999999988

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.96  E-value=8.4e-29  Score=228.29  Aligned_cols=194  Identities=21%  Similarity=0.184  Sum_probs=165.9

Q ss_pred             ccccceeEEEec--CCCC---cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC---------CCCCC-eeeee
Q 025173           19 KIIRCRAAISRI--PGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP---------MAVFP-RILGH   83 (256)
Q Consensus        19 ~~~t~ka~~~~~--~g~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~---------~~~~p-~~~G~   83 (256)
                      .|.+|||+++..  ++++   ++++++|.|.|+++||+||+.++++|++|.+...+....         ....| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            467899999965  5544   888999999999999999999999999999877654210         01233 37999


Q ss_pred             eeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-CCCCCcccccCCCceeeccccccc
Q 025173           84 EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSS  162 (256)
Q Consensus        84 e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~  162 (256)
                      |++|+|+++|+.+..+++||+|++.+...|+.|++|+.+++++|+....   .|. ..+                   |+
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~-------------------g~  141 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETNF-------------------GS  141 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCCC-------------------cc
Confidence            9999999999999999999999999999999999999999999976432   221 122                   39


Q ss_pred             eeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHH--hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          163 FTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWK--VAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       163 ~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      |+||+.++.+.++++|+++++++++.+.+.+.|||+++..  .+++.+|++|+|+|+ |++|++++|+|+.+|++
T Consensus       142 ~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~  216 (398)
T TIGR01751       142 FAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGN  216 (398)
T ss_pred             ceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCe
Confidence            9999999999999999999999999999999999998754  477899999999998 99999999999999998

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=1e-28  Score=222.43  Aligned_cols=194  Identities=28%  Similarity=0.405  Sum_probs=165.3

Q ss_pred             eeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCC
Q 025173           24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGD  103 (256)
Q Consensus        24 ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd  103 (256)
                      |+++++..+..|++++++.|+|+++||+||+.++++|++|++.+.|.+.. ..+|.++|||++|+|+++|+++++|++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (337)
T cd05283           1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGP-TKYPLVPGHEIVGIVVAVGSKVTKFKVGD   79 (337)
T ss_pred             CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCC-CCCCcccCcceeeEEEEECCCCcccCCCC
Confidence            57888888777999999999999999999999999999999999887643 45688999999999999999999999999


Q ss_pred             EEe-eecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          104 LVL-PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       104 ~V~-~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      +|+ ......|+.|.+|..+..++|+...... .|....|              ....|+|+||+.++.+.++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~g~~~~~~~v~~~~~~~lp~~~~  144 (337)
T cd05283          80 RVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGKYPDG--------------TITQGGYADHIVVDERFVFKIPEGLD  144 (337)
T ss_pred             EEEEecCCCCCCCCccccCCchhcCcchhhcc-cccccCC--------------CcCCCcceeEEEechhheEECCCCCC
Confidence            997 4445689999999999999998765421 0110000              01123899999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++.+.+.+.|||+++ +...+++|++|+|.|+|++|++++++|+.+|++
T Consensus       145 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~  195 (337)
T cd05283         145 SAAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAE  195 (337)
T ss_pred             HHHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCe
Confidence            999999999999999986 445689999999998899999999999999986

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.96  E-value=8.2e-29  Score=221.07  Aligned_cols=168  Identities=21%  Similarity=0.327  Sum_probs=138.3

Q ss_pred             cceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecC-hhhHHhHcCCCCCC--CCCCeeeeeeeeEEEEEccCCCcc
Q 025173           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLC-HSDVTFWRSTQPPM--AVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        22 t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~-~~D~~~~~g~~~~~--~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      +||++++.+++. +++++.|.|+|+++||||||.+++|| ++|++.+.|.++..  ..+|.++|||++|+|+++|+++ +
T Consensus         1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~   78 (308)
T TIGR01202         1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G   78 (308)
T ss_pred             CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence            478999998876 99999999999999999999999996 79999998876532  3579999999999999999998 6


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      |++||+|+..    |..|..|..               +  .+|                   +|+||++++++.++++|
T Consensus        79 ~~vGdrV~~~----~~~c~~~~~---------------~--~~G-------------------~~aey~~v~~~~~~~ip  118 (308)
T TIGR01202        79 FRPGDRVFVP----GSNCYEDVR---------------G--LFG-------------------GASKRLVTPASRVCRLD  118 (308)
T ss_pred             CCCCCEEEEe----Ccccccccc---------------c--cCC-------------------cccceEEcCHHHceeCC
Confidence            9999999863    222322210               0  123                   99999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++++++. +.+. ...|||+++.+ . ..++++|+|+|+|++|++++|+||++|++.
T Consensus       119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~  171 (308)
T TIGR01202       119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSP  171 (308)
T ss_pred             CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCce
Confidence            9999864 4444 57899998744 3 346899999999999999999999999984

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=1.5e-28  Score=219.17  Aligned_cols=180  Identities=24%  Similarity=0.435  Sum_probs=158.0

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      |||+++.+++. +++++++.|+++++||+||+.++++|++|.+.+.|.++    +|.++|||++|+|+++|++   +++|
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~G~~---~~~G   72 (319)
T cd08242           1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEGPEA---ELVG   72 (319)
T ss_pred             CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC----CCCccCceEEEEEEEeCCC---CCCC
Confidence            68999988765 99999999999999999999999999999999988753    5788999999999999987   6799


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-CCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      |+|...+..+|+.|.+|..+..+.|.+...   .+. ..+|                   +|++|+.++.+.++++|+++
T Consensus        73 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~  130 (319)
T cd08242          73 KRVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG-------------------AFAEYLTLPLENLHVVPDLV  130 (319)
T ss_pred             CeEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC-------------------ceEEEEEechHHeEECcCCC
Confidence            999998888899999999999999987553   232 1244                   89999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +.++++.+ ....++|. +.+..++++|++|+|+|+|.+|++++|+|+.+|++
T Consensus       131 ~~~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~  181 (319)
T cd08242         131 PDEQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPD  181 (319)
T ss_pred             CHHHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence            99888864 35556666 45788999999999999899999999999999998

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.96  E-value=1.7e-28  Score=219.57  Aligned_cols=190  Identities=32%  Similarity=0.501  Sum_probs=171.0

Q ss_pred             ceeEEEecCCCC-cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPGKP-LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g~~-l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||++++..++++ +.+.+.+.|.++++||+||+.++++|+.|.+.+.|.++....+|.++|+|++|+|+.+|+++.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~   80 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV   80 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence            799999999987 6778888888999999999999999999999999887643456889999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      ||+|++.+..+|+.|.+|..++.+.|.....   .|...+|                   +|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~  138 (338)
T cd08254          81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGIDG-------------------GFAEYIVVPARALVPVPDGV  138 (338)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccCC-------------------cceeeEEechHHeEECCCCC
Confidence            9999998888999999999999999965433   2333344                   99999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++++.++..+.|||+++.+...++++++|||.|+|.+|++++++|+..|++
T Consensus       139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~  191 (338)
T cd08254         139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAA  191 (338)
T ss_pred             CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCE
Confidence            99999999999999999988888899999999998899999999999999987

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=2.4e-28  Score=222.55  Aligned_cols=210  Identities=33%  Similarity=0.547  Sum_probs=170.8

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc---c
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE---V   99 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~---~   99 (256)
                      ||++++.+++.++++++.|.|.++++||+||+.++++|++|++.+.+.++.  .+|.++|||++|+|+++|+++.+   |
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~vG~~~~~~~~~   78 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEVGPNVENPYGL   78 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEeCCCCCCCCcC
Confidence            789999988766899999999999999999999999999999999887754  67889999999999999999988   9


Q ss_pred             CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      ++||+|++.+..+|+.|.+|..+++++|++.......+.. .+|.-.+..-.+...+ ....|+|++|+.++.+.++++|
T Consensus        79 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~P  157 (367)
T cd08263          79 SVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVY-MYSMGGLAEYAVVPATALAPLP  157 (367)
T ss_pred             CCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccc-cccCCcceeEEEechhhEEECC
Confidence            9999999988889999999999999999976421000100 0000000000000000 0012499999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++++++++.+++++.|||+++.+...+.++++|+|+|+|++|++++++|+..|+.+
T Consensus       158 ~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~  214 (367)
T cd08263         158 ESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASP  214 (367)
T ss_pred             CCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCe
Confidence            999999999999999999999888888899999999988999999999999999873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.96  E-value=2.3e-28  Score=220.00  Aligned_cols=190  Identities=28%  Similarity=0.422  Sum_probs=164.4

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCC-CCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPK-AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~-~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||++++..++. +++++++.|+|. ++||+||+.++++|+.|++.+.|.++.  .+|.++|+|++|+|+++|++++.+++
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~   77 (344)
T cd08284           1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS--TPGFVLGHEFVGEVVEVGPEVRTLKV   77 (344)
T ss_pred             CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCCcccccceEEEEEeeCCCccccCC
Confidence            68999988765 999999999985 999999999999999999999887653  45788999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP  179 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~  179 (256)
                      ||+|++.+...|+.|.+|..++++.|++...   .|....               ....|+|++|+.++.+  .++++|+
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------~~~~g~~~~~~~v~~~~~~~~~~p~  139 (344)
T cd08284          78 GDRVVSPFTIACGECFYCRRGQSGRCAKGGL---FGYAGS---------------PNLDGAQAEYVRVPFADGTLLKLPD  139 (344)
T ss_pred             CCEEEEcccCCCCCChHHhCcCcccCCCCcc---cccccc---------------CCCCCceeEEEEcccccCceEECCC
Confidence            9999998888899999999999999977533   211000               0012499999999864  9999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++++++.+++++.|||+++. .+++.+|++|+|+|+|++|++++|+|+.+|+.
T Consensus       140 ~l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~  193 (344)
T cd08284         140 GLSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAA  193 (344)
T ss_pred             CCCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCc
Confidence            9999999999999999999874 58899999999998899999999999999974

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=2.9e-28  Score=219.08  Aligned_cols=185  Identities=34%  Similarity=0.590  Sum_probs=163.3

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      ||+++++.++. +++++++.|++.++||+|||.++++|+.|+..+.+.++. ..+|.++|+|++|+|+++|++++.|++|
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~~~~~~g~e~~G~V~~~G~~v~~~~~G   78 (337)
T cd08261           1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF-ASYPRILGHELSGEVVEVGEGVAGLKVG   78 (337)
T ss_pred             CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc-CCCCcccccccEEEEEEeCCCCCCCCCC
Confidence            68999998876 899999999999999999999999999999999887665 3557899999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|++.+...|+.|..|+.++++.|.+.+.   .+....|                   +|++|+.++++ ++++|++++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~-~~~~p~~~~  135 (337)
T cd08261          79 DRVVVDPYISCGECYACRKGRPNCCENLQV---LGVHRDG-------------------GFAEYIVVPAD-ALLVPEGLS  135 (337)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCCCCCe---eeecCCC-------------------cceeEEEechh-eEECCCCCC
Confidence            999998888999999999999999954322   2222233                   89999999999 999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++.+ ..+.++++++ +..++.+|++|||+|+|.+|.+++|+|+.+|.+
T Consensus       136 ~~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~  185 (337)
T cd08261         136 LDQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGAR  185 (337)
T ss_pred             HHHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence            9999877 4678888876 788999999999998899999999999999988

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.96  E-value=5e-28  Score=218.07  Aligned_cols=187  Identities=32%  Similarity=0.423  Sum_probs=160.3

Q ss_pred             ceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||++++.+++. +++++.|.|+| +++||+||+.++++|++|++.+.|.++.  ..|.++|||++|+|+++|+++..+++
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~   77 (345)
T cd08287           1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEVGSEVTSVKP   77 (345)
T ss_pred             CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC--CCCcccccceEEEEEEeCCCCCccCC
Confidence            78999998876 99999999996 8999999999999999999999887653  45789999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP  179 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~  179 (256)
                      ||+|++.....|+.|..|..+..++|.+...   .+...+|                   +|++|+.++.+  .++++|+
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~  135 (345)
T cd08287          78 GDFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------------GQGEYVRVPLADGTLVKVPG  135 (345)
T ss_pred             CCEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------------ceEEEEEcchhhCceEECCC
Confidence            9999886666799999999999999987543   3333444                   99999999864  9999999


Q ss_pred             CCChhhhh-----hchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          180 DIPLDIAC-----LLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       180 ~l~~~~aa-----~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++++.+.     .+...+.|||+++ ..+++++|++|+|.|+|++|++++|+|+++|+..
T Consensus       136 ~l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~  195 (345)
T cd08287         136 SPSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAER  195 (345)
T ss_pred             CCChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence            99872221     2235788999986 5788999999999988999999999999999874

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.96  E-value=6.2e-28  Score=216.00  Aligned_cols=187  Identities=34%  Similarity=0.525  Sum_probs=165.8

Q ss_pred             eeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCC
Q 025173           24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGD  103 (256)
Q Consensus        24 ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd  103 (256)
                      |++++.++|..+++++.|.|.+.++||+||+.++++|++|++.+.+.++. ..+|.++|||++|+|+++|+++.+|++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd   79 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEVGAGVEGRKVGD   79 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEECCCCcccccCC
Confidence            68899988656999999999999999999999999999999999887643 45688999999999999999999999999


Q ss_pred             EEeeecc-cCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          104 LVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       104 ~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      +|+..+. ..|+.|.+|+++..++|++..+   .+...+|                   +|++|+.++.+.++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~  137 (330)
T cd08245          80 RVGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQG-------------------GYAEYMVADAEYTVLLPDGLP  137 (330)
T ss_pred             EEEEccccCCCCCChhhhCcCcccCcCccc---cCcccCC-------------------ccccEEEEcHHHeEECCCCCC
Confidence            9987543 5699999999999999998654   3332344                   899999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++.+.+.+.|||+++.. .+++++++|+|+|+|.+|++++++|+..|..
T Consensus       138 ~~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~  188 (330)
T cd08245         138 LAQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGFE  188 (330)
T ss_pred             HHHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            99999999999999998754 7899999999999888999999999999987

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.96  E-value=6.8e-28  Score=216.86  Aligned_cols=186  Identities=31%  Similarity=0.509  Sum_probs=165.6

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      ||++++++++. +.+++.+.|++.+++|+||+.++++|+.|+..+.+.++. ..+|.++|+|++|+|+++|++++.+++|
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~-~~~~~~~g~~~~G~V~~~G~~v~~~~~G   78 (343)
T cd08235           1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTD-LKPPRILGHEIAGEIVEVGDGVTGFKVG   78 (343)
T ss_pred             CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCcc-CCCCcccccceEEEEEeeCCCCCCCCCC
Confidence            68999998875 899999999999999999999999999999999887642 3457899999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCc-----EEEc
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH-----VVKI  177 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~-----~~~~  177 (256)
                      |+|++.+...|+.|..|..+++++|.....   .|...+|                   +|++|+.++.+.     ++++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~~~~~~~~~~l  136 (343)
T cd08235          79 DRVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYDG-------------------GFAEYVRVPAWAVKRGGVLKL  136 (343)
T ss_pred             CEEEEccCCCCCCChHHHCcCcccCCCcce---eccCCCC-------------------cceeeEEecccccccccEEEC
Confidence            999999888899999999999999988654   3433445                   999999999988     9999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      |+++++++++.+ ..+.+||+++. ..++++|++|+|+|+|.+|++++|+|+..|++
T Consensus       137 P~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~  191 (343)
T cd08235         137 PDNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGAR  191 (343)
T ss_pred             CCCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence            999999999876 68899999874 45899999999998899999999999999988

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.96  E-value=5.4e-28  Score=217.79  Aligned_cols=188  Identities=28%  Similarity=0.447  Sum_probs=159.8

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCC-C-CCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ-P-PMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~-~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++.+++..+++++.|.|.|+++||+||+.++++|++|++++.+.. . ....+|.++|||++|+|+++|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            6899999888779999999999999999999999999999999876642 1 1134678899999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++.+...|..|.+|+.+.+++|++.++   .+...+|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~iP~~  138 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRPG-------------------AFAEYLVIPAFNVWKIPDD  138 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCCC-------------------cceeeEEechHHeEECcCC
Confidence            99999998888999999999999999987543   3333344                   9999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++++++.+ ..+.++++++..  ...+|++|+|.|+|++|++++|+|++.|+++
T Consensus       139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~  190 (341)
T PRK05396        139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARH  190 (341)
T ss_pred             CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCE
Confidence            999888754 455666665432  3468999999988999999999999999863

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=6.5e-28  Score=221.39  Aligned_cols=190  Identities=26%  Similarity=0.478  Sum_probs=160.1

Q ss_pred             ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCC------CCCCCCCeeeeeeeeEEEEEccC
Q 025173           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ------PPMAVFPRILGHEAVGVVESVGG   94 (256)
Q Consensus        21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~------~~~~~~p~~~G~e~vG~Vv~vG~   94 (256)
                      ..+.+.++..+ . ++++++|.|+++++||+||+.++++|++|++.+.+..      +....+|.++|||++|+|+++|+
T Consensus        27 ~~~~~~~~~~~-~-~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~  104 (384)
T cd08265          27 TNLGSKVWRYP-E-LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGK  104 (384)
T ss_pred             ccceeEEEeCC-C-EEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECC
Confidence            33555666643 3 9999999999999999999999999999999887421      21235688999999999999999


Q ss_pred             CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcE
Q 025173           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (256)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~  174 (256)
                      ++.+|++||+|++.+..+|+.|..|..++.++|.....   .|...+|                   +|++|+.++.+.+
T Consensus       105 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~v~v~~~~~  162 (384)
T cd08265         105 NVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSADG-------------------AFAEYIAVNARYA  162 (384)
T ss_pred             CCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCCC-------------------cceeeEEechHHe
Confidence            99999999999999989999999999999999987653   4443345                   9999999999999


Q ss_pred             EEcCCCC-------ChhhhhhchhhHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          175 VKITPDI-------PLDIACLLSCGVSTGLGAAWKV-AEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       175 ~~~p~~l-------~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++|+++       +.+ ++.+..++.+||+++... +++++|++|+|+|+|++|++++|+|+.+|+.+
T Consensus       163 ~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~  230 (384)
T cd08265         163 WEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASK  230 (384)
T ss_pred             EECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence            9999864       444 555666889999988666 78999999999988999999999999999854

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.96  E-value=8.8e-28  Score=218.66  Aligned_cols=192  Identities=22%  Similarity=0.380  Sum_probs=158.4

Q ss_pred             ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      ..++++++..++. +++++.+.|+|+++||+||+.++++|++|++.+.+....  ...+|.++|||++|+|+++|+++.+
T Consensus        16 ~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   94 (364)
T PLN02702         16 EENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKH   94 (364)
T ss_pred             cccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCC
Confidence            3344455555655 888899999899999999999999999999998764211  1235788999999999999999999


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-CCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      |++||+|++.+...|+.|..|+.|.+++|++...   .+. ..+|                   +|++|+.++.+.++++
T Consensus        95 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~g-------------------~~~~y~~v~~~~~~~~  152 (364)
T PLN02702         95 LVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVHG-------------------SLANQVVHPADLCFKL  152 (364)
T ss_pred             CCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCCC-------------------cccceEEcchHHeEEC
Confidence            9999999998888999999999999999986432   111 1234                   9999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP  237 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~  237 (256)
                      |++++++++++. ..+.++|+++ +..++.+|++|+|+|+|++|++++|+|+.+|+..++
T Consensus       153 P~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~  210 (364)
T PLN02702        153 PENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIV  210 (364)
T ss_pred             CCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            999999988753 2445578876 788899999999999999999999999999987433

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=2.2e-27  Score=213.58  Aligned_cols=189  Identities=31%  Similarity=0.484  Sum_probs=166.9

Q ss_pred             ceeEEEecCC-CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      |||+++++++ ..+++++++.|.|.++||+||+.++++|++|.+.+.+.++.....|.++|||++|+|+++|+++..+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~   80 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV   80 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence            7999998877 239999999999999999999999999999999998876543445778999999999999999999999


Q ss_pred             CCEEeeec-ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          102 GDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       102 Gd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      ||+|++.+ ...|+.|.+|..+++.+|.+...   .|....|                   +|++|+.++.+.++++|++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~s~~~~~~~~~~~lp~~  138 (341)
T cd08297          81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVDG-------------------TFAEYAIADARYVTPIPDG  138 (341)
T ss_pred             CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccCC-------------------cceeEEEeccccEEECCCC
Confidence            99999875 45699999999999999988654   3443444                   8999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++.++..+.|||+++.. .+++++++|||+|+ +.+|++++++|+++|++
T Consensus       139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~  192 (341)
T cd08297         139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLR  192 (341)
T ss_pred             CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCe
Confidence            9999999999999999998755 58999999999998 67999999999999987

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.96  E-value=1.1e-27  Score=215.66  Aligned_cols=185  Identities=31%  Similarity=0.523  Sum_probs=165.3

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      |||+++++++. +++++.+.|++.++||+||+.++++|+.|++.+.+.+..  .+|.++|+|++|+|+++|+++..|++|
T Consensus         1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~--~~~~~~g~~~~G~V~~~g~~v~~~~~G   77 (343)
T cd08236           1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY--HPPLVLGHEFSGTVEEVGSGVDDLAVG   77 (343)
T ss_pred             CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC--CCCcccCcceEEEEEEECCCCCcCCCC
Confidence            78999998876 899999999999999999999999999999998887633  457889999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|++.+...|..|.+|..+.++.|++...   .|...+|                   +|++|+.++.+.++++|++++
T Consensus        78 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lP~~~~  135 (343)
T cd08236          78 DRVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRDG-------------------AFAEYVSVPARNLIKIPDHVD  135 (343)
T ss_pred             CEEEEcCCCCCCCChhHHCcChhhCCCcce---EecccCC-------------------cccceEEechHHeEECcCCCC
Confidence            999999888899999999999999977532   3333444                   999999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++.+ ..+.|||+++. .+.++++++|+|+|+|.+|++++|+|+.+|+.
T Consensus       136 ~~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~  185 (343)
T cd08236         136 YEEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAK  185 (343)
T ss_pred             HHHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            9999887 57789999874 78899999999998899999999999999987

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.96  E-value=1.6e-27  Score=213.46  Aligned_cols=186  Identities=30%  Similarity=0.517  Sum_probs=167.1

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      |||+++.+++. +++++.+.|++.++||+||+.++++|+.|++...|.++.  .+|.++|+|++|+|+++|++++++++|
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~--~~p~~~g~~~~G~v~~vG~~v~~~~~G   77 (334)
T cd08234           1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA--APPLVPGHEFAGVVVAVGSKVTGFKVG   77 (334)
T ss_pred             CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC--CCCcccccceEEEEEEeCCCCCCCCCC
Confidence            78999998886 999999999999999999999999999999999988764  478899999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|++.+...|+.|.+|..+++++|.....   .|...+|                   +|++|+.++.+.++++|++++
T Consensus        78 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~  135 (334)
T cd08234          78 DRVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRNG-------------------GFAEYVVVPAKQVYKIPDNLS  135 (334)
T ss_pred             CEEEEcCCcCCCCCccccCcChhhCCCcce---eccCCCC-------------------cceeEEEecHHHcEECcCCCC
Confidence            999998888899999999999999987643   3333445                   999999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +.+++.+ ..+.++++++ +.+++.+|++|+|+|+|.+|.+++++|+..|+++
T Consensus       136 ~~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~  186 (334)
T cd08234         136 FEEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASR  186 (334)
T ss_pred             HHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence            9998876 6788999987 8889999999999988999999999999999873

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=3.1e-27  Score=210.47  Aligned_cols=188  Identities=28%  Similarity=0.505  Sum_probs=164.6

Q ss_pred             ceeEEEecCC-CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||++++++++ ..+++++++.|++.++||+||+.++++|++|.+.+.+.+.. ..+|.++|+|++|+|+++|++++.|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~   79 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVEVGPDVEGWKV   79 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCc-CCCCeeeccceEEEEEEECCCcCcCCC
Confidence            5889988655 23999999999999999999999999999999998887633 345789999999999999999999999


Q ss_pred             CCEEeeecc-cCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          102 GDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       102 Gd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      ||+|++... ..|+.|.+|..+..+.|+..+.   .|...+|                   +|++|+.++.+.++++|++
T Consensus        80 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lp~~  137 (306)
T cd08258          80 GDRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQADG-------------------GFAEYVLVPEESLHELPEN  137 (306)
T ss_pred             CCEEEEccCcCCCCCCcchhCcCcccCCCCce---eeecCCC-------------------ceEEEEEcchHHeEECcCC
Confidence            999998774 6799999999999999987532   2333334                   9999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++++ +...+.+||+++...++++++++|+|.|+|.+|.+++|+|+.+|++
T Consensus       138 ~~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~  190 (306)
T cd08258         138 LSLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGAT  190 (306)
T ss_pred             CCHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence            9999887 6668889999988889999999999988899999999999999988

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=2.3e-27  Score=213.46  Aligned_cols=177  Identities=25%  Similarity=0.408  Sum_probs=152.3

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCC----------CCCCCCeeeeeeeeEEEEEc
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP----------PMAVFPRILGHEAVGVVESV   92 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~----------~~~~~p~~~G~e~vG~Vv~v   92 (256)
                      ||++++..+  .+++++++.|+++++||+||+.++++|+.|++.+.|...          ....+|.++|+|++|+|+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   78 (341)
T cd08262           1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY   78 (341)
T ss_pred             CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence            689999766  499999999999999999999999999999999987321          01235789999999999999


Q ss_pred             cCCCcc-cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC
Q 025173           93 GGGVEE-VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (256)
Q Consensus        93 G~~v~~-~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~  171 (256)
                      |+++++ |++||+|++.+...|+.|.+|..+.             ....+|                   +|+||+.++.
T Consensus        79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~-------------~~~~~g-------------------~~~~~~~v~~  126 (341)
T cd08262          79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGL-------------SPEAPG-------------------GYAEYMLLSE  126 (341)
T ss_pred             CCCCcCCCCCCCEEEecCCcCCCCChhhhCCC-------------CcCCCC-------------------ceeeeEEech
Confidence            999987 9999999999889999999994221             111233                   8999999999


Q ss_pred             CcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          172 THVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +.++++|+++++++++ ++..+++||++ ...+++++|++|||+|+|++|.+++|+|+.+|+..
T Consensus       127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~  188 (341)
T cd08262         127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGP  188 (341)
T ss_pred             HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence            9999999999999887 56688899998 58899999999999988999999999999999874

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.95  E-value=2.2e-27  Score=211.33  Aligned_cols=162  Identities=28%  Similarity=0.321  Sum_probs=145.3

Q ss_pred             ceeEEEecCCCC---cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173           23 CRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (256)
Q Consensus        23 ~ka~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~   99 (256)
                      ||++++.+++.+   ++++++|.|.+.++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++|+++.++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            789999887754   77899999999999999999999999999999988775334568899999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (256)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~  179 (256)
                      ++||+|++...                              .                   |+|++|+.++.+.++++|+
T Consensus        81 ~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~ip~  111 (324)
T cd08292          81 QVGQRVAVAPV------------------------------H-------------------GTWAEYFVAPADGLVPLPD  111 (324)
T ss_pred             CCCCEEEeccC------------------------------C-------------------CcceeEEEEchHHeEECCC
Confidence            99999986431                              1                   2899999999999999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++++++.+++...|||+++ +.+++++|++|||+|+ |.+|++++|+|+++|+.
T Consensus       112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~  166 (324)
T cd08292         112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGIN  166 (324)
T ss_pred             CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCe
Confidence            999999999988899999976 5688999999999988 99999999999999998

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.95  E-value=3.8e-27  Score=212.56  Aligned_cols=186  Identities=30%  Similarity=0.499  Sum_probs=159.2

Q ss_pred             eEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCC-CCC-CCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           25 AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QPP-MAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        25 a~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~-~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      +++|++++. +++++.+.|++.++||+||+.++++|+.|++.+.+. ... ...+|.++|+|++|+|+++|+++.+|++|
T Consensus         1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (343)
T cd05285           1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG   79 (343)
T ss_pred             CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence            467788855 999999999999999999999999999999876432 111 12357789999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|++.+..+|+.|.+|+.|.+++|++....  .....+|                   +|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~  138 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA--ATPPVDG-------------------TLCRYVNHPADFCHKLPDNVS  138 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCcccc--ccccCCC-------------------ceeeeEEecHHHcEECcCCCC
Confidence            9999988889999999999999999875431  0111234                   999999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++.+ ..+.+|++++ +.+++++|++|+|.|+|++|++++|+|+.+|++
T Consensus       139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~  188 (343)
T cd05285         139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGAT  188 (343)
T ss_pred             HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence            9999877 5788999975 889999999999998899999999999999987

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.95  E-value=4.2e-27  Score=211.58  Aligned_cols=183  Identities=28%  Similarity=0.491  Sum_probs=155.8

Q ss_pred             EEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHc-CCCCC-CCCCCeeeeeeeeEEEEEccCCCcccCCCCE
Q 025173           27 ISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR-STQPP-MAVFPRILGHEAVGVVESVGGGVEEVREGDL  104 (256)
Q Consensus        27 ~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~-g~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~  104 (256)
                      ++++.+. +++++.+.|.++++||+||+.++++|++|++.+. +.+.. ...+|.++|+|++|+|+++|+++.+|++||+
T Consensus         2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   80 (339)
T cd08232           2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR   80 (339)
T ss_pred             eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence            4666766 9999999999999999999999999999998774 33211 1245789999999999999999999999999


Q ss_pred             EeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-----CCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173          105 VLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-----PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (256)
Q Consensus       105 V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-----~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~  179 (256)
                      |++.+..+|+.|.+|..|+.++|.....   .+.     ..+|                   +|++|+.++.+.++++|+
T Consensus        81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~g-------------------~~~~~v~v~~~~~~~iP~  138 (339)
T cd08232          81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRFPHVQG-------------------GFREYLVVDASQCVPLPD  138 (339)
T ss_pred             EEEccCCcCCCChHHhCcCcccCccccc---eeeccccCCCCC-------------------ceeeEEEechHHeEECcC
Confidence            9999888999999999999999987533   111     0133                   999999999999999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++++|+. ..++.+||+++.+...+ ++++|||.|+|.+|++++|+|+.+|++
T Consensus       139 ~~~~~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~  191 (339)
T cd08232         139 GLSLRRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAA  191 (339)
T ss_pred             CCCHHHhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence            999999876 56888999987665556 899999998899999999999999985

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.95  E-value=7.4e-27  Score=209.14  Aligned_cols=162  Identities=25%  Similarity=0.339  Sum_probs=138.3

Q ss_pred             ceeEEEecCCCC-----cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173           23 CRAAISRIPGKP-----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        23 ~ka~~~~~~g~~-----l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      ||++++.+++.+     ++++++|.|.|+++||+||+.++++|++|++.+.|.++....+|.++|||++|+|+++|+++.
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            789999988853     777888999999999999999999999999999887654345789999999999999999998


Q ss_pred             c-cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173           98 E-VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (256)
Q Consensus        98 ~-~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~  176 (256)
                      + |++||+|+....                             .+|                   +|+||+.++++.+++
T Consensus        81 ~~~~vGd~V~~~~~-----------------------------~~g-------------------~~a~~~~v~~~~~~~  112 (324)
T cd08291          81 AQSLIGKRVAFLAG-----------------------------SYG-------------------TYAEYAVADAQQCLP  112 (324)
T ss_pred             ccCCCCCEEEecCC-----------------------------CCC-------------------cchheeeecHHHeEE
Confidence            6 999999985321                             023                   899999999999999


Q ss_pred             cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEE-C-CCHHHHHHHHHHHHcCCC
Q 025173          177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIF-G-LGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~-G-aG~vG~~aiqla~~~G~~  234 (256)
                      +|+++++++++.+++...|||. +.+.... ++++++|+ | +|++|++++|+|+.+|++
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~  170 (324)
T cd08291         113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGIK  170 (324)
T ss_pred             CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCCE
Confidence            9999999999988888899976 4555665 56666665 4 499999999999999997

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=2.1e-26  Score=207.53  Aligned_cols=181  Identities=28%  Similarity=0.329  Sum_probs=151.2

Q ss_pred             ceeEEEecCCCC--cEEEE-eecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC-------------------CCCCCee
Q 025173           23 CRAAISRIPGKP--LVMEE-IEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-------------------MAVFPRI   80 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~-~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-------------------~~~~p~~   80 (256)
                      ||++++..++.+  +.+.+ .+.|.+.+++|+|||.++++|++|++.+.|.++.                   ...+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            688898877653  55543 4777789999999999999999999998876531                   2356889


Q ss_pred             eeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccc
Q 025173           81 LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNV  160 (256)
Q Consensus        81 ~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~  160 (256)
                      +|||++|+|+++|+++++|++||+|++.+...|+.|..|..     |   ..   .|...+|                  
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~---~~---~~~~~~g------------------  131 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----I---DY---IGSERDG------------------  131 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----c---cc---cCCCCCc------------------
Confidence            99999999999999999999999999887777776655321     1   11   2222234                  


Q ss_pred             cceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          161 SSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       161 g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                       +|++|+.++.+.++++|+++++++++.+.+++.|||+++ ...++++|++|||+|+ |++|++++++|+.+|++
T Consensus       132 -~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~  204 (350)
T cd08274         132 -GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAI  204 (350)
T ss_pred             -cceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCE
Confidence             899999999999999999999999999999999999976 7789999999999998 99999999999999998

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.95  E-value=1.4e-26  Score=207.49  Aligned_cols=164  Identities=24%  Similarity=0.283  Sum_probs=143.1

Q ss_pred             eeEEEecC---CCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           24 RAAISRIP---GKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        24 ka~~~~~~---g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      ||+++.++   +.+  +++.++|.|+|+++||+||++++++|+.|.+.+.+..+. ..+|.++|+|++|+|+++|++++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~   79 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVTL   79 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEeCCCCCC
Confidence            57777775   444  788889999999999999999999999999998887653 456889999999999999999999


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      |++||+|+....                           ...+|                   +|++|+.++.+.++++|
T Consensus        80 ~~~Gd~V~~~~~---------------------------~~~~g-------------------~~~~~~~v~~~~~~~ip  113 (336)
T TIGR02817        80 FKPGDEVWYAGD---------------------------IDRPG-------------------SNAEFHLVDERIVGHKP  113 (336)
T ss_pred             CCCCCEEEEcCC---------------------------CCCCC-------------------cccceEEEcHHHcccCC
Confidence            999999975320                           01123                   89999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCC-----CCEEEEECC-CHHHHHHHHHHHHc-CCC
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEE-----GSTVAIFGL-GAVGLSVLIRIHLK-FTR  234 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~VlI~Ga-G~vG~~aiqla~~~-G~~  234 (256)
                      +++++++++.++++..|||+++.+..++.+     |++|||+|+ |++|++++|+|+.+ |++
T Consensus       114 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~  176 (336)
T TIGR02817       114 KSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLT  176 (336)
T ss_pred             CCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCE
Confidence            999999999999999999999888888877     999999997 99999999999998 877

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd05281 TDH Threonine dehydrogenase

Probab=99.95  E-value=4.5e-26  Score=205.46  Aligned_cols=188  Identities=30%  Similarity=0.467  Sum_probs=158.1

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCC--CCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~--~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||+++++.++..+++.+.+.|+|.++|++||+.++++|+.|++.+.+..  .....+|.++|||++|+|+.+|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            6899999877669999999999999999999999999999998865432  11124577899999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++.+..+|+.|.+|..+.+++|.....   .|...+|                   +|++|++++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~~~~~lP~~  138 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKI---LGVDTDG-------------------CFAEYVVVPEENLWKNDKD  138 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCcccce---EeccCCC-------------------cceEEEEechHHcEECcCC
Confidence            99999998888999999999999999976422   3333334                   8999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++++.+ .+...+.++++++.  ...++|++|+|.|+|.+|++++|+|+..|.++
T Consensus       139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~  190 (341)
T cd05281         139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASL  190 (341)
T ss_pred             CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence            998555 55567788888754  45678999999988999999999999999853

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.94  E-value=4.5e-26  Score=204.88  Aligned_cols=164  Identities=27%  Similarity=0.392  Sum_probs=146.9

Q ss_pred             ceeEEEecCCCC---cEEEEeecCCCCC-CeEEEEEeeeecChhhHHhHcCCCCCCCC----CCeeeeeeeeEEEEEccC
Q 025173           23 CRAAISRIPGKP---LVMEEIEVDPPKA-GEVRIKILCTSLCHSDVTFWRSTQPPMAV----FPRILGHEAVGVVESVGG   94 (256)
Q Consensus        23 ~ka~~~~~~g~~---l~~~~~~~p~~~~-~eVlVkv~a~~i~~~D~~~~~g~~~~~~~----~p~~~G~e~vG~Vv~vG~   94 (256)
                      |||+++..++.+   +.+++.|.|+|.+ +||+||+.++++|++|++.+.|..+....    +|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            899999988875   7899999998887 99999999999999999999887653222    677999999999999999


Q ss_pred             CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcE
Q 025173           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (256)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~  174 (256)
                      ++..|++||+|++...                             ..                   |+|++|+.++.+.+
T Consensus        81 ~v~~~~~Gd~V~~~~~-----------------------------~~-------------------g~~~~~~~v~~~~~  112 (341)
T cd08290          81 GVKSLKPGDWVIPLRP-----------------------------GL-------------------GTWRTHAVVPADDL  112 (341)
T ss_pred             CCCCCCCCCEEEecCC-----------------------------CC-------------------ccchheEeccHHHe
Confidence            9999999999986431                             01                   38999999999999


Q ss_pred             EEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          175 VKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       175 ~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++|+++++++++.+++.+.|||+++.+...+++|++|||+|+ |++|++++|+|++.|++
T Consensus       113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~  173 (341)
T cd08290         113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIK  173 (341)
T ss_pred             EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCe
Confidence            9999999999999999999999999877788999999999998 99999999999999987

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.94  E-value=1.8e-25  Score=199.00  Aligned_cols=167  Identities=24%  Similarity=0.272  Sum_probs=143.1

Q ss_pred             ceeEEEecCCC--CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||+++++.+++  +++++++|.|.++++||+||+.++++|++|+..+.|.++....+|.++|||++|+|+++  .++.++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            79999999886  59999999999999999999999999999999998886543456889999999999998  456899


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++....                        .|...+|                   +|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~~------------------------~g~~~~g-------------------~~~~~~~v~~~~~~~lp~~  115 (325)
T cd05280          79 EGDEVLVTGYD------------------------LGMNTDG-------------------GFAEYVRVPADWVVPLPEG  115 (325)
T ss_pred             CCCEEEEcccc------------------------cCCCCCc-------------------eeEEEEEEchhhEEECCCC
Confidence            99999864310                        2222334                   8999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcC--CC-CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAE--VE-EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~--~~-~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++.+++.+.|||+++....+  +. .+++|+|+|+ |++|++++|+|+.+|+.
T Consensus       116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~  173 (325)
T cd05280         116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYT  173 (325)
T ss_pred             CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCE
Confidence            9999999999999999998765543  35 4579999998 99999999999999988

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.94  E-value=2e-25  Score=199.23  Aligned_cols=164  Identities=26%  Similarity=0.318  Sum_probs=146.2

Q ss_pred             cceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173           22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (256)
Q Consensus        22 t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~   99 (256)
                      ||||+++.+++..  +.+++.+.|.+.++||+||+.++++|+.|+....+.++....+|.++|||++|+|+++|+++.++
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            7999999988753  66777788888999999999999999999999988765434557789999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (256)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~  179 (256)
                      ++||+|+....                              +                   |+|++|+.++.+.++++|+
T Consensus        81 ~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~v~~~~~~~ip~  111 (334)
T PTZ00354         81 KEGDRVMALLP------------------------------G-------------------GGYAEYAVAHKGHVMHIPQ  111 (334)
T ss_pred             CCCCEEEEecC------------------------------C-------------------CceeeEEEecHHHcEeCCC
Confidence            99999975421                              1                   2899999999999999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++++++.+.+++.|||+++.+.+.+.+|++|+|+|+ |++|++++++|+.+|+.
T Consensus       112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~  167 (334)
T PTZ00354        112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAA  167 (334)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE
Confidence            99999999999999999999888889999999999997 99999999999999987

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.94  E-value=4.4e-26  Score=200.71  Aligned_cols=133  Identities=25%  Similarity=0.426  Sum_probs=118.2

Q ss_pred             eeeeeeeEEEEEccCCCc------ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-------CCCCccc
Q 025173           80 ILGHEAVGVVESVGGGVE------EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-------RDGTNRF  146 (256)
Q Consensus        80 ~~G~e~vG~Vv~vG~~v~------~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-------~~G~~~~  146 (256)
                      ++|||++|+|+++|++|+      +|++||||+..+...|+.|.+|+.+++++|++...   .|..       .+|    
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~~~~~~~G----   73 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALDSGWPLSG----   73 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCcccccCCccccc----
Confidence            479999999999999999      89999999998888999999999999999988654   2221       233    


Q ss_pred             ccCCCceeeccccccceeeeEEecCC-cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHH
Q 025173          147 RDLKGEVIHNVLNVSSFTEYTVVDVT-HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVL  225 (256)
Q Consensus       147 ~~~~~~~~~~~~~~g~~aey~~v~~~-~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~ai  225 (256)
                                     +|+||+.++++ .++++|+++++++++.+++...|+|+++ +.....+|++|||+|+|++|++++
T Consensus        74 ---------------~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~  137 (280)
T TIGR03366        74 ---------------GYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAA  137 (280)
T ss_pred             ---------------cceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHH
Confidence                           99999999987 7999999999999999999999999986 455667999999999999999999


Q ss_pred             HHHHHcCCCc
Q 025173          226 IRIHLKFTRH  235 (256)
Q Consensus       226 qla~~~G~~~  235 (256)
                      |+||.+|+++
T Consensus       138 ~~ak~~G~~~  147 (280)
T TIGR03366       138 AAAAAAGAAR  147 (280)
T ss_pred             HHHHHcCCCE
Confidence            9999999974

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.94  E-value=1.9e-25  Score=201.30  Aligned_cols=182  Identities=29%  Similarity=0.476  Sum_probs=155.1

Q ss_pred             ecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCC--CCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEe
Q 025173           29 RIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP--PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVL  106 (256)
Q Consensus        29 ~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~--~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~  106 (256)
                      ++++.++++++.|.|.|+++||+||+.++++|+.|+..+.+...  ....+|.++|+|++|+|+++|+++.+|++||+|+
T Consensus         5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            46777799999999999999999999999999999998765421  1123567899999999999999999999999999


Q ss_pred             eecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhh
Q 025173          107 PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA  186 (256)
Q Consensus       107 ~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~a  186 (256)
                      +.+...|+.|..|..+.++.|++.+.   .+....|                   +|++|+.++++.++++|++++.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~~~~a  142 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------CFAEYAVVPAQNIWKNPKSIPPEYA  142 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcce---EeecCCC-------------------cceeEEEeehHHcEECcCCCChHhh
Confidence            98888999999999999999988654   2332344                   8999999999999999999998655


Q ss_pred             hhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          187 CLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       187 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                       +++..+.+|++++  .....+|++|+|.|+|++|.+++|+|+.+|++.
T Consensus       143 -~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~  188 (340)
T TIGR00692       143 -TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYP  188 (340)
T ss_pred             -hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence             4566888898875  455789999999888999999999999999873

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=6.1e-25  Score=196.00  Aligned_cols=184  Identities=26%  Similarity=0.326  Sum_probs=154.2

Q ss_pred             ceeEEEecCC--CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPG--KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g--~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      |||++++..+  ..+++++.+.|.++++|++||+.++++|++|++...|.++.....|.++|||++|+|+++|+.+.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            7999998664  23788888888889999999999999999999999887655345688999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++.....|..+      ..+.|....   ..|...+|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~------~~~~~~~~~---~~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~  132 (336)
T cd08276          81 VGDRVVPTFFPNWLDG------PPTAEDEAS---ALGGPIDG-------------------VLAEYVVLPEEGLVRAPDH  132 (336)
T ss_pred             CCCEEEEecccccccc------ccccccccc---ccccccCc-------------------eeeeEEEecHHHeEECCCC
Confidence            9999998765555433      333443211   12222233                   8999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++.+++.+.+.+.+||+++.+.+.+++|++|+|+|+|++|++++++|+..|++
T Consensus       133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~  186 (336)
T cd08276         133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGAR  186 (336)
T ss_pred             CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCE
Confidence            999999999999999999988888999999999998899999999999999998

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.94  E-value=2.4e-25  Score=200.62  Aligned_cols=149  Identities=17%  Similarity=0.104  Sum_probs=124.0

Q ss_pred             cEEEEeecCCCC-CCeEEEEEeeeecChhhHHhHcCCC--CCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeeccc
Q 025173           35 LVMEEIEVDPPK-AGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQG  111 (256)
Q Consensus        35 l~~~~~~~p~~~-~~eVlVkv~a~~i~~~D~~~~~g~~--~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~  111 (256)
                      +++++.|.|+|. ++||||||.|+|||+.|........  .....+|.++|||++|+|+++|+++++|++||+|+...  
T Consensus        23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--  100 (345)
T cd08293          23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--  100 (345)
T ss_pred             eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence            888899999874 9999999999999999964332111  11124678899999999999999999999999997421  


Q ss_pred             CCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhh----hh
Q 025173          112 DCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI----AC  187 (256)
Q Consensus       112 ~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~----aa  187 (256)
                                                                       ++|+||++++++.++++|+++++++    ++
T Consensus       101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a  131 (345)
T cd08293         101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG  131 (345)
T ss_pred             -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence                                                             1799999999999999999864432    44


Q ss_pred             hchhhHHHHHHHHHHhcCCCCC--CEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          188 LLSCGVSTGLGAAWKVAEVEEG--STVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       188 ~l~~~~~ta~~~l~~~~~~~~g--~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .++.++.|||+++.+.+++++|  ++|||+|+ |++|++++|+|+++|+.
T Consensus       132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~  181 (345)
T cd08293         132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCS  181 (345)
T ss_pred             hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCC
Confidence            5677899999998888888877  99999998 99999999999999984

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.94  E-value=2.7e-25  Score=198.66  Aligned_cols=164  Identities=21%  Similarity=0.227  Sum_probs=146.4

Q ss_pred             cceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173           22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (256)
Q Consensus        22 t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~   99 (256)
                      |||++++.+++.+  +++++++.|.|+++||+||+.++++|++|++.+.+.++. ..+|.++|||++|+|+.+|++++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~vG~~v~~~   79 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKVGSGVKHI   79 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC-CCCCCccCcceEEEEEEeCCCCCCC
Confidence            6999999988765  888889999999999999999999999999998887654 3467889999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (256)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~  179 (256)
                      ++||+|+....                             ..                   |+|++|+.++.+.++++|+
T Consensus        80 ~~Gd~V~~~~~-----------------------------~~-------------------g~~~~~v~v~~~~~~~lp~  111 (327)
T PRK10754         80 KVGDRVVYAQS-----------------------------AL-------------------GAYSSVHNVPADKAAILPD  111 (327)
T ss_pred             CCCCEEEECCC-----------------------------CC-------------------cceeeEEEcCHHHceeCCC
Confidence            99999974211                             01                   2899999999999999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++++++.+++...|||.++.+.+.+.+|++|+|+|+ |.+|++++|+|+.+|++
T Consensus       112 ~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~  167 (327)
T PRK10754        112 AISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK  167 (327)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCE
Confidence            99999999988899999998888889999999999986 99999999999999997

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.93  E-value=3.3e-25  Score=199.72  Aligned_cols=162  Identities=25%  Similarity=0.305  Sum_probs=133.8

Q ss_pred             ccceeEEEecCCC-CcEEEEeec----CCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeee--eEEEEEcc
Q 025173           21 IRCRAAISRIPGK-PLVMEEIEV----DPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEA--VGVVESVG   93 (256)
Q Consensus        21 ~t~ka~~~~~~g~-~l~~~~~~~----p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~--vG~Vv~vG   93 (256)
                      ..+|+++...+.. -|++++.++    |+|+++||||||+|++||+.|++.+.|.++....+|+++|++.  .|.+..+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~   85 (338)
T cd08295           6 VILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVD   85 (338)
T ss_pred             EEEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEe
Confidence            3456666544432 288888877    7899999999999999999999999885432124577888754  45555577


Q ss_pred             CCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC-C
Q 025173           94 GGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-T  172 (256)
Q Consensus        94 ~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~-~  172 (256)
                      +.++.|++||+|+..                                                    |+|+||++++. +
T Consensus        86 ~~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~  113 (338)
T cd08295          86 SGNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQ  113 (338)
T ss_pred             cCCCCCCCCCEEEec----------------------------------------------------CCceeEEEecchh
Confidence            888899999999632                                                    27999999999 7


Q ss_pred             cEEEcC-CCCChh-hhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          173 HVVKIT-PDIPLD-IACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       173 ~~~~~p-~~l~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .++++| ++++++ +++.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|++
T Consensus       114 ~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~  178 (338)
T cd08295         114 DLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCY  178 (338)
T ss_pred             ceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE
Confidence            999995 678887 788899999999999888899999999999998 99999999999999997

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.93  E-value=1.1e-24  Score=194.25  Aligned_cols=166  Identities=22%  Similarity=0.258  Sum_probs=140.9

Q ss_pred             eeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        24 ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||+++...+.+  ++++++|.|.++++||+||+.++++|++|++.+.|.++....+|.++|||++|+|+.  .++..|++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            67888877764  688999999999999999999999999999999887643345688999999999998  55678999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      ||+|++....                        .|...+|                   +|++|+.++.+.++++|+++
T Consensus        79 Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~~~~~~~~~iP~~~  115 (323)
T TIGR02823        79 GDEVIVTGYG------------------------LGVSHDG-------------------GYSQYARVPADWLVPLPEGL  115 (323)
T ss_pred             CCEEEEccCC------------------------CCCCCCc-------------------cceEEEEEchhheEECCCCC
Confidence            9999865321                        1222233                   89999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHh--cCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          182 PLDIACLLSCGVSTGLGAAWKV--AEVEEGS-TVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~-~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++++.+++.+.||+.++...  +++.+|+ +|+|+|+ |.+|++++|+|+.+|+.
T Consensus       116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~  172 (323)
T TIGR02823       116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYE  172 (323)
T ss_pred             CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCe
Confidence            9999999999999998876433  3488998 9999998 99999999999999987

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=4.7e-25  Score=190.41  Aligned_cols=160  Identities=33%  Similarity=0.536  Sum_probs=141.9

Q ss_pred             eEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCC
Q 025173           49 EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICS  128 (256)
Q Consensus        49 eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~  128 (256)
                      ||+||+.++++|+.|++.+.+.++....+|.++|||++|+|+++|+++..|++||+|+......|+.|.+|+.    .|+
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~   76 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP   76 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence            6899999999999999999887652245688999999999999999999999999999999899999999986    676


Q ss_pred             cCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCC
Q 025173          129 KFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEE  208 (256)
Q Consensus       129 ~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~  208 (256)
                      ....   .+...+|                   +|++|+.++.+.++++|+++++++++.+++++.|||+++.....+.+
T Consensus        77 ~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~  134 (271)
T cd05188          77 GGGI---LGEGLDG-------------------GFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP  134 (271)
T ss_pred             CCCE---eccccCC-------------------cceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence            6554   3333344                   99999999999999999999999999999999999999877777799


Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++|+|+|+|++|++++++++..|.+
T Consensus       135 ~~~vli~g~~~~G~~~~~~a~~~g~~  160 (271)
T cd05188         135 GDTVLVLGAGGVGLLAAQLAKAAGAR  160 (271)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCe
Confidence            99999999966999999999999976

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.93  E-value=1.1e-24  Score=194.47  Aligned_cols=167  Identities=19%  Similarity=0.215  Sum_probs=137.9

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      |||+++.+++++  +++++.+.|.|+++||+||+.++++|++|.+...+.......+|.++|||++|+|++.|  +..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            799999988764  77899999999999999999999999999877653222113458899999999999954  56799


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++....                        .|...+|                   +|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~  115 (326)
T cd08289          79 PGDEVIVTSYD------------------------LGVSHHG-------------------GYSEYARVPAEWVVPLPKG  115 (326)
T ss_pred             CCCEEEEcccc------------------------cCCCCCC-------------------cceeEEEEcHHHeEECCCC
Confidence            99999865421                        2222334                   9999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhc--C-CCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVA--E-VEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~--~-~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++.+++.+.|||.++....  . ...+++|||+|+ |++|++++|+|+.+|++
T Consensus       116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~  173 (326)
T cd08289         116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYE  173 (326)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCe
Confidence            999999999999999998875433  3 345789999998 99999999999999987

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.93  E-value=1.1e-24  Score=194.80  Aligned_cols=161  Identities=26%  Similarity=0.269  Sum_probs=143.5

Q ss_pred             cceeEEEecCCC----CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173           22 RCRAAISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        22 t~ka~~~~~~g~----~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      .||++++.+++.    ++++++++.|.+.++||+||+.++++|+.|++...|.++....+|.++|||++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            489999998766    3889999999999999999999999999999998887654346788999999999999999999


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      ++++||+|++...                                                  |+|++|+.++.+.++++
T Consensus        81 ~~~~Gd~V~~~~~--------------------------------------------------g~~~s~~~v~~~~~~~i  110 (329)
T cd08250          81 DFKVGDAVATMSF--------------------------------------------------GAFAEYQVVPARHAVPV  110 (329)
T ss_pred             CCCCCCEEEEecC--------------------------------------------------cceeEEEEechHHeEEC
Confidence            9999999986421                                                  28999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      |++  ..+++.+++++.|||+++.+..++.+|++|+|+|+ |.+|++++|+|+..|+.
T Consensus       111 p~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~  166 (329)
T cd08250         111 PEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCH  166 (329)
T ss_pred             CCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCe
Confidence            997  35677888899999999888889999999999997 99999999999999987

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.93  E-value=1.3e-24  Score=194.17  Aligned_cols=154  Identities=23%  Similarity=0.255  Sum_probs=129.9

Q ss_pred             cceeEEEecC--CCC----cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173           22 RCRAAISRIP--GKP----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        22 t~ka~~~~~~--g~~----l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      .||+|++.++  +.+    +++++.+.|+|+++||||||.+++||+.|.+....  +  ..+|.++|+|++|+|++   .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~--~~~p~v~G~e~~G~V~~---~   74 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L--NEGDTMIGTQVAKVIES---K   74 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--C--CCCCcEecceEEEEEec---C
Confidence            5899999883  333    88899999999999999999999999987652211  1  24688999999999995   3


Q ss_pred             CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC---
Q 025173           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT---  172 (256)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~---  172 (256)
                      ++.|++||+|+..                                                    ++|++|+.++.+   
T Consensus        75 ~~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~  102 (329)
T cd08294          75 NSKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQP  102 (329)
T ss_pred             CCCCCCCCEEEee----------------------------------------------------CCeeeEEEECCcccc
Confidence            4579999999742                                                    169999999999   


Q ss_pred             cEEEcCCCCC-----hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          173 HVVKITPDIP-----LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       173 ~~~~~p~~l~-----~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .++++|++++     ...++.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       103 ~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~  170 (329)
T cd08294         103 DLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCK  170 (329)
T ss_pred             ceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE
Confidence            9999999988     23334677899999999888899999999999997 99999999999999997

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.93  E-value=1.5e-24  Score=192.04  Aligned_cols=166  Identities=31%  Similarity=0.436  Sum_probs=143.0

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++...+.+  +++.+.+.|.++++||+||+.++++|+.|++...+.++. ...|.++|||++|+|+++|.  ..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~--~~~~   77 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEAPG--GTFT   77 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEecC--CCCC
Confidence            688898876643  667777777889999999999999999999999887643 45678999999999999995  5799


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++....                        .+...+|                   +|++|+.++.+.++++|++
T Consensus        78 ~Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~~~~~~~~~ip~~  114 (320)
T cd08243          78 PGQRVATAMGG------------------------MGRTFDG-------------------SYAEYTLVPNEQVYAIDSD  114 (320)
T ss_pred             CCCEEEEecCC------------------------CCCCCCc-------------------ccceEEEcCHHHcEeCCCC
Confidence            99999875321                        1111223                   8999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++.+++++.|||+++.+..++++|++|+|+|+ |++|++++|+|+.+|++
T Consensus       115 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~  169 (320)
T cd08243         115 LSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGAT  169 (320)
T ss_pred             CCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCE
Confidence            9999999999999999999888888999999999998 99999999999999988

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.93  E-value=2.5e-24  Score=192.84  Aligned_cols=141  Identities=23%  Similarity=0.270  Sum_probs=123.2

Q ss_pred             cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCC
Q 025173           35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCG  114 (256)
Q Consensus        35 l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~  114 (256)
                      +++++.+.|+|++|||||||.|+++|+.|.   .|.++. ...|.++|.|++|+|++.|+   +|++||+|+..      
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~~-~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~------   85 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKRL-KEGDTMMGQQVARVVESKNV---ALPKGTIVLAS------   85 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCcC-CCCCcEecceEEEEEEeCCC---CCCCCCEEEEe------
Confidence            888899999999999999999999999654   344332 23578999999999999874   59999999742      


Q ss_pred             CCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc----CCCCChhhh-hhc
Q 025173          115 ECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI----TPDIPLDIA-CLL  189 (256)
Q Consensus       115 ~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~----p~~l~~~~a-a~l  189 (256)
                                                                    ++|++|+.++.+.+.++    |++++++++ +++
T Consensus        86 ----------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l  119 (325)
T TIGR02825        86 ----------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTV  119 (325)
T ss_pred             ----------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhc
Confidence                                                          16899999999988887    899999987 678


Q ss_pred             hhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          190 SCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       190 ~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|++
T Consensus       120 ~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~  165 (325)
T TIGR02825       120 GMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCK  165 (325)
T ss_pred             ccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCE
Confidence            8999999999888999999999999997 99999999999999987

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.93  E-value=3.2e-24  Score=194.72  Aligned_cols=162  Identities=23%  Similarity=0.283  Sum_probs=132.0

Q ss_pred             cccceeEEEecC--CCC----cEEEEe---ecCC-CCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeee--eeeE
Q 025173           20 IIRCRAAISRIP--GKP----LVMEEI---EVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH--EAVG   87 (256)
Q Consensus        20 ~~t~ka~~~~~~--g~~----l~~~~~---~~p~-~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~--e~vG   87 (256)
                      +.+.|.+++...  +.+    |++++.   +.|. +++||||||+.|+++|+.|...+.+.... ..+|+++|+  |++|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~-~~~p~~~G~~~~~~G   84 (348)
T PLN03154          6 VVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDS-YLPPFVPGQRIEGFG   84 (348)
T ss_pred             cccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCC-CCCCcCCCCeeEeeE
Confidence            455688888443  222    777663   5553 47999999999999999998755443322 246889997  8899


Q ss_pred             EEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeE
Q 025173           88 VVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT  167 (256)
Q Consensus        88 ~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~  167 (256)
                      +|+.+|+++++|++||+|+..                                                    |+|+||.
T Consensus        85 ~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~aey~  112 (348)
T PLN03154         85 VSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEEYS  112 (348)
T ss_pred             EEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEEEE
Confidence            999999999999999999632                                                    2799999


Q ss_pred             EecCCc--EEE--cCCCCChh-hhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          168 VVDVTH--VVK--ITPDIPLD-IACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       168 ~v~~~~--~~~--~p~~l~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++.+.  +++  +|++++++ +||.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+||++|++
T Consensus       113 ~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~  185 (348)
T PLN03154        113 LIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCY  185 (348)
T ss_pred             EEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE
Confidence            998753  544  48999986 688899999999999888889999999999998 99999999999999987

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.93  E-value=3.8e-24  Score=190.68  Aligned_cols=167  Identities=16%  Similarity=0.161  Sum_probs=139.7

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      |||+++.++|.+  ++++++|.|+|+++||+||+.++++|++|.+.+.|.++....+|.++|||++|+|++  +++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            789999988753  889999999999999999999999999999998887643234678899999999999  6677899


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++....                        .+...+|                   +|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~v~~~~~~~lp~~  115 (324)
T cd08288          79 PGDRVVLTGWG------------------------VGERHWG-------------------GYAQRARVKADWLVPLPEG  115 (324)
T ss_pred             CCCEEEECCcc------------------------CCCCCCC-------------------cceeEEEEchHHeeeCCCC
Confidence            99999864211                        1111123                   8999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHH--HhcCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAW--KVAEVE-EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~--~~~~~~-~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++.+++.+.|++.++.  +..+.. ++++|+|+|+ |++|++++|+|+.+|++
T Consensus       116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~  173 (324)
T cd08288         116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYE  173 (324)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCe
Confidence            999999999999999987653  224445 6789999998 99999999999999997

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.92  E-value=3.4e-24  Score=190.66  Aligned_cols=164  Identities=24%  Similarity=0.322  Sum_probs=141.7

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      |||+++++++.+  +.+.+.+.|.+.++||+||+.++++|++|++.+.|..+.  ...+|.++|||++|+|+++|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            689999876654  666777777789999999999999999999999886532  2356788999999999999999999


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      +++||+|++...                            ..+                   |+|++|+.++.+.++++|
T Consensus        81 ~~~Gd~V~~~~~----------------------------~~~-------------------g~~~~~~~v~~~~~~~lp  113 (324)
T cd08244          81 AWLGRRVVAHTG----------------------------RAG-------------------GGYAELAVADVDSLHPVP  113 (324)
T ss_pred             CCCCCEEEEccC----------------------------CCC-------------------ceeeEEEEEchHHeEeCC
Confidence            999999986531                            012                   389999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++++.+++.+.||| ++.+.++++++++|+|+|+ |++|++++++|+.+|+.
T Consensus       114 ~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~  169 (324)
T cd08244         114 DGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGAT  169 (324)
T ss_pred             CCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCE
Confidence            9999999999999999995 4678889999999999997 99999999999999987

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.92  E-value=3.9e-24  Score=192.74  Aligned_cols=166  Identities=25%  Similarity=0.273  Sum_probs=144.5

Q ss_pred             ceeEEEecCCCC---cEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCC--------------CCCCCeeeeee
Q 025173           23 CRAAISRIPGKP---LVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPP--------------MAVFPRILGHE   84 (256)
Q Consensus        23 ~ka~~~~~~g~~---l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~--------------~~~~p~~~G~e   84 (256)
                      ||++++.+++++   +++++++.|+| +++||+||+.++++|++|++.+.|....              ...+|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            789999988876   88899999999 4999999999999999999998874210              13568899999


Q ss_pred             eeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeecccccccee
Q 025173           85 AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFT  164 (256)
Q Consensus        85 ~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a  164 (256)
                      ++|+|+++|+++.++++||+|++....                           ..+                   |+|+
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~---------------------------~~~-------------------g~~~  114 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPP---------------------------WSQ-------------------GTHA  114 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCC---------------------------CCC-------------------ccce
Confidence            999999999999999999999865321                           012                   3899


Q ss_pred             eeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCC----CCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          165 EYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEE----GSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       165 ey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~----g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +|+.++.+.++++|+++++++++.+++.+.|||+++.+.+.+.+    |++|+|+|+ |++|++++++|+.+|+.
T Consensus       115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~  189 (350)
T cd08248         115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAH  189 (350)
T ss_pred             eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCe
Confidence            99999999999999999999999999999999998877777754    999999997 99999999999999997

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=7e-24  Score=189.35  Aligned_cols=162  Identities=27%  Similarity=0.370  Sum_probs=145.4

Q ss_pred             eeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        24 ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      |++++...+.+  +++++.+.|.|.++||+||+.++++|++|...+.+.++....+|.++|||++|+|+.+|+++..|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~   81 (331)
T cd08273           2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV   81 (331)
T ss_pred             eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence            78888887755  8888889999999999999999999999999998876543356889999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      ||+|++...                              +                   |+|++|+.++.+.++++|+++
T Consensus        82 Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~~  112 (331)
T cd08273          82 GDRVAALTR------------------------------V-------------------GGNAEYINLDAKYLVPVPEGV  112 (331)
T ss_pred             CCEEEEeCC------------------------------C-------------------cceeeEEEechHHeEECCCCC
Confidence            999986531                              1                   289999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++++.+++++.+||+++.+...+.+|++|+|+|+ |++|++++++|+.+|+.
T Consensus       113 ~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~  166 (331)
T cd08273         113 DAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAE  166 (331)
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCE
Confidence            999999999999999999877789999999999998 99999999999999986

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=6.4e-24  Score=187.53  Aligned_cols=156  Identities=21%  Similarity=0.226  Sum_probs=136.3

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++.+.+ +  +++++.+.|.++++||+||+.++++|+.|.+.+.+.     ..|.++|||++|+|+++|+++..|+
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g~e~~G~v~~~G~~v~~~~   74 (305)
T cd08270           1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER-----PDGAVPGWDAAGVVERAAADGSGPA   74 (305)
T ss_pred             CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC-----CCCCcccceeEEEEEEeCCCCCCCC
Confidence            6889998754 4  666788889899999999999999999999887632     2357899999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|+....                              +                   |+|++|+.++.+.++++|++
T Consensus        75 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~v~~~~~~~ip~~  105 (305)
T cd08270          75 VGARVVGLGA------------------------------M-------------------GAWAELVAVPTGWLAVLPDG  105 (305)
T ss_pred             CCCEEEEecC------------------------------C-------------------cceeeEEEEchHHeEECCCC
Confidence            9999985421                              1                   28999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++.+++.+.|||+++.+.... +|++|+|+|+ |++|++++++|+..|++
T Consensus       106 ~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~~  159 (305)
T cd08270         106 VSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGAH  159 (305)
T ss_pred             CCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCCE
Confidence            99999999999999999987665555 5999999998 99999999999999987

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.92  E-value=6.6e-24  Score=190.10  Aligned_cols=165  Identities=26%  Similarity=0.281  Sum_probs=143.2

Q ss_pred             ceeEEEecCCCC-----cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173           23 CRAAISRIPGKP-----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        23 ~ka~~~~~~g~~-----l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      ||++++.+++.+     ++.++++.|++.++||+||+.++++|++|++.+.+.++. ..+|.++|||++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~   79 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAVGSEVT   79 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCC-CCCCcccccceEEEEEEcCCCCC
Confidence            689999998864     555677888889999999999999999999998887653 34677899999999999999999


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      .|++||+|+....                           ...+|                   +|++|+.++.+.++++
T Consensus        80 ~~~~Gd~V~~~~~---------------------------~~~~g-------------------~~~~~~~v~~~~~~~i  113 (336)
T cd08252          80 LFKVGDEVYYAGD---------------------------ITRPG-------------------SNAEYQLVDERIVGHK  113 (336)
T ss_pred             CCCCCCEEEEcCC---------------------------CCCCc-------------------cceEEEEEchHHeeeC
Confidence            9999999985321                           01123                   8999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCC-----CCEEEEECC-CHHHHHHHHHHHHcC-CC
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEE-----GSTVAIFGL-GAVGLSVLIRIHLKF-TR  234 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~VlI~Ga-G~vG~~aiqla~~~G-~~  234 (256)
                      |++++.++++.+++.+.|||+++.+.+.+.+     |++|+|+|+ |++|++++|+|+.+| ++
T Consensus       114 p~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~  177 (336)
T cd08252         114 PKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLT  177 (336)
T ss_pred             CCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcE
Confidence            9999999999999999999999888888887     999999996 999999999999999 66

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.92  E-value=3.3e-24  Score=193.39  Aligned_cols=169  Identities=29%  Similarity=0.402  Sum_probs=144.1

Q ss_pred             ceeEEEecCC-CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||+++++.++ ..+++++++.|+|+++||+||+.++++|++|++.+.+.++  ..+|.++|||++|+|+.+|++++.+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~~   78 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI--PSYPAILGCDFAGTVVEVGSGVTRFKV   78 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccc--cCCCceeeeeeeEEEEEeCCCcCcCCC
Confidence            7899999884 2288899999999999999999999999999988766541  235779999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      ||+|++.....|.                      +...+                   |+|++|+.++.+.++++|+++
T Consensus        79 Gd~V~~~~~~~~~----------------------~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~  117 (339)
T cd08249          79 GDRVAGFVHGGNP----------------------NDPRN-------------------GAFQEYVVADADLTAKIPDNI  117 (339)
T ss_pred             CCEEEEEeccccC----------------------CCCCC-------------------CcccceEEechhheEECCCCC
Confidence            9999976532111                      11112                   389999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCC----------CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEV----------EEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~----------~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++++.+++.+.|||+++.+..++          .++++|+|+|+ |.+|++++++|+.+|+.
T Consensus       118 ~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~  181 (339)
T cd08249         118 SFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYK  181 (339)
T ss_pred             CHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCe
Confidence            9999999999999999987666554          78999999998 99999999999999987

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.92  E-value=1e-23  Score=185.84  Aligned_cols=163  Identities=27%  Similarity=0.395  Sum_probs=144.8

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++.+.+.+  +++++.+.|.+.++||+||+.++++|+.|++.+.+.++....+|.++|||++|+|+++|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            799999886554  777788877788999999999999999999998887654345688999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++...                              +                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~  111 (323)
T cd05276          81 VGDRVCALLA------------------------------G-------------------GGYAEYVVVPAGQLLPVPEG  111 (323)
T ss_pred             CCCEEEEecC------------------------------C-------------------CceeEEEEcCHHHhccCCCC
Confidence            9999986421                              1                   28999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++.++..+.++|+++.+.+.+.++++|+|+|+ |++|++++++++..|+.
T Consensus       112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~  166 (323)
T cd05276         112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGAR  166 (323)
T ss_pred             CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCE
Confidence            9999999999999999999888889999999999998 99999999999999988

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.92  E-value=1.8e-23  Score=184.66  Aligned_cols=168  Identities=27%  Similarity=0.410  Sum_probs=146.7

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++..++.+  +.+++++.|.+.+++|+|++.++++|++|++.+.|.++.....|.++|||++|+|+++|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            688888876544  778888988899999999999999999999998887654346788999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++....                        .+ ..+|                   ++++|+.++.+.++++|++
T Consensus        81 ~Gd~v~~~~~~------------------------~~-~~~g-------------------~~~~~~~~~~~~~~~ip~~  116 (325)
T cd08253          81 VGDRVWLTNLG------------------------WG-RRQG-------------------TAAEYVVVPADQLVPLPDG  116 (325)
T ss_pred             CCCEEEEeccc------------------------cC-CCCc-------------------ceeeEEEecHHHcEeCCCC
Confidence            99999876421                        00 0123                   8999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++.+++++.+||+++.+..++.+|++|+|+|+ |++|++++++++..|+.
T Consensus       117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~  171 (325)
T cd08253         117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGAR  171 (325)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE
Confidence            9999999999999999999888899999999999997 99999999999999987

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.91  E-value=1e-24  Score=166.16  Aligned_cols=109  Identities=39%  Similarity=0.703  Sum_probs=96.9

Q ss_pred             CCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCC
Q 025173           47 AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNI  126 (256)
Q Consensus        47 ~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~  126 (256)
                      |+||||||.+++||++|++.+.+.......+|.++|||++|+|+++|+++++|++||+|++.+...|+.|.+|..+.+++
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            68999999999999999999999544446899999999999999999999999999999998888899999999999999


Q ss_pred             CCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173          127 CSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus       127 c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      |++.+.   .|...+|                   +|+||+++++++++++
T Consensus        81 c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEV---LGLGLDG-------------------GFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEE---TTTSSTC-------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCE---eEcCCCC-------------------cccCeEEEehHHEEEC
Confidence            988877   6766777                   9999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.91  E-value=8e-23  Score=184.90  Aligned_cols=166  Identities=21%  Similarity=0.313  Sum_probs=139.8

Q ss_pred             eeEEEecCCCCcEEEEeecCCC---CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc-cc
Q 025173           24 RAAISRIPGKPLVMEEIEVDPP---KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE-EV   99 (256)
Q Consensus        24 ka~~~~~~g~~l~~~~~~~p~~---~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~-~~   99 (256)
                      |++++..++.++++++++.|.|   +++||+||+.++++|++|+..+.+.......+|.++|+|++|+|+++|+++. +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   81 (352)
T cd08247           2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW   81 (352)
T ss_pred             ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence            6899999988888877777766   8999999999999999999887653322122478899999999999999998 89


Q ss_pred             CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC----cEE
Q 025173          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT----HVV  175 (256)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~----~~~  175 (256)
                      ++||+|++.....|                       +  .+                   |+|++|+.++..    .++
T Consensus        82 ~~Gd~V~~~~~~~~-----------------------~--~~-------------------g~~~~~~~v~~~~~~~~~~  117 (352)
T cd08247          82 KVGDEVCGIYPHPY-----------------------G--GQ-------------------GTLSQYLLVDPKKDKKSIT  117 (352)
T ss_pred             CCCCEEEEeecCCC-----------------------C--CC-------------------ceeeEEEEEccccccceeE
Confidence            99999987543211                       0  12                   389999999987    789


Q ss_pred             EcCCCCChhhhhhchhhHHHHHHHHHHhc-CCCCCCEEEEECC-CHHHHHHHHHHHHcCC
Q 025173          176 KITPDIPLDIACLLSCGVSTGLGAAWKVA-EVEEGSTVAIFGL-GAVGLSVLIRIHLKFT  233 (256)
Q Consensus       176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~  233 (256)
                      ++|+++++++++.+++++.|||+++.+.. ++++|++|+|+|+ |++|++++|+|+.+|.
T Consensus       118 ~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~  177 (352)
T cd08247         118 RKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYN  177 (352)
T ss_pred             ECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCC
Confidence            99999999999999999999999887766 7999999999998 8999999999999854

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=4.6e-23  Score=182.52  Aligned_cols=168  Identities=27%  Similarity=0.358  Sum_probs=146.2

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++.+++.+  +++++.+.|.+.+++|+|++.++++|++|+....+.+.....+|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            789999888765  777888888889999999999999999999998887543234678899999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++....                        .+ ..+                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~------------------------~~-~~~-------------------g~~~~~~~v~~~~~~~~p~~  116 (326)
T cd08272          81 VGDEVYGCAGG------------------------LG-GLQ-------------------GSLAEYAVVDARLLALKPAN  116 (326)
T ss_pred             CCCEEEEccCC------------------------cC-CCC-------------------CceeEEEEecHHHcccCCCC
Confidence            99999864310                        00 012                   38999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++.+++.+++.+.+||+++.+..++++|++++|+|+ |.+|++++++|+..|+.
T Consensus       117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~  171 (326)
T cd08272         117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGAR  171 (326)
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCE
Confidence            9999999999999999998888899999999999996 99999999999999987

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=9.3e-23  Score=180.92  Aligned_cols=165  Identities=33%  Similarity=0.427  Sum_probs=146.0

Q ss_pred             ceeEEEecCC--CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPG--KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g--~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++.+++  ..+++++++.|++.+++|+||+.++++|++|+..+.+.... ..+|.++|||++|+|+.+|+++..++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~~~   79 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAVGAKVTGWK   79 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCcccccceEEEEEEeCCCCCcCC
Confidence            7999999988  24999999999999999999999999999999988776532 22467899999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++....                           ..+|                   +|++|+.++.+.++++|++
T Consensus        80 ~Gd~V~~~~~~---------------------------~~~~-------------------~~~s~~~~~~~~~~~ip~~  113 (325)
T cd08271          80 VGDRVAYHASL---------------------------ARGG-------------------SFAEYTVVDARAVLPLPDS  113 (325)
T ss_pred             CCCEEEeccCC---------------------------CCCc-------------------cceeEEEeCHHHeEECCCC
Confidence            99999865311                           0122                   8999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++..+++.+.+.+.+|++++.+.+++.+|++|+|+|+ |++|++++++|+..|+.
T Consensus       114 ~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~  168 (325)
T cd08271         114 LSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLR  168 (325)
T ss_pred             CCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCE
Confidence            9999999999999999999888889999999999998 89999999999999987

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.90  E-value=1.2e-22  Score=179.84  Aligned_cols=168  Identities=31%  Similarity=0.394  Sum_probs=144.8

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++...+.+  +.+++.+.|.+++++|+|++.++++|+.|+....+.+.....+|.++|||++|+|+.+|+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            688888876543  667777778889999999999999999999988777654334578899999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++.+..                         +...+                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~-------------------------~~~~~-------------------g~~~~~~~~~~~~~~~~p~~  116 (328)
T cd08268          81 VGDRVSVIPAA-------------------------DLGQY-------------------GTYAEYALVPAAAVVKLPDG  116 (328)
T ss_pred             CCCEEEecccc-------------------------ccCCC-------------------ccceEEEEechHhcEeCCCC
Confidence            99999875421                         01112                   38999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++.+++.+.++|.++.+...+.++++|+|+|+ |++|++++++++..|+.
T Consensus       117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~  171 (328)
T cd08268         117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGAT  171 (328)
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE
Confidence            9999999999999999999888889999999999998 99999999999999987

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.90  E-value=6.8e-23  Score=182.21  Aligned_cols=151  Identities=25%  Similarity=0.336  Sum_probs=135.4

Q ss_pred             cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCC
Q 025173           35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCG  114 (256)
Q Consensus        35 l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~  114 (256)
                      +++++.+.|++.++||+||+.++++|+.|...+.+.+.....+|.++|||++|+|+++|++++++++||+|++.+.    
T Consensus        14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----   89 (323)
T cd05282          14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG----   89 (323)
T ss_pred             EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence            5566778888899999999999999999999988776543456789999999999999999999999999986531    


Q ss_pred             CCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHH
Q 025173          115 ECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS  194 (256)
Q Consensus       115 ~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~  194 (256)
                                                +                   |+|++|+.++.+.++++|+++++++++.+++...
T Consensus        90 --------------------------~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~  124 (323)
T cd05282          90 --------------------------E-------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL  124 (323)
T ss_pred             --------------------------C-------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence                                      1                   2899999999999999999999999999989999


Q ss_pred             HHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          195 TGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       195 ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      |||+++.+.+.+.+|++|+|+|+ |.+|++++|+|+.+|+.
T Consensus       125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~  165 (323)
T cd05282         125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFK  165 (323)
T ss_pred             HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCe
Confidence            99999888888999999999998 89999999999999988

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.89  E-value=1.6e-22  Score=182.91  Aligned_cols=181  Identities=29%  Similarity=0.424  Sum_probs=137.7

Q ss_pred             cceeEEEecC-CCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCC---CCCeeeeeeeeEE---EEEc
Q 025173           22 RCRAAISRIP-GKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA---VFPRILGHEAVGV---VESV   92 (256)
Q Consensus        22 t~ka~~~~~~-g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~---~~p~~~G~e~vG~---Vv~v   92 (256)
                      +++.+++..+ +.+  ...++.++|.|+++|++|++.++++|+.|++++.|.+....   .+|.+.+.++.|.   +...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~   83 (347)
T KOG1198|consen    4 KIRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESV   83 (347)
T ss_pred             ccceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEecc
Confidence            3444444433 332  44477899999999999999999999999999999987755   6775555555555   3344


Q ss_pred             c-CCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC
Q 025173           93 G-GGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (256)
Q Consensus        93 G-~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~  171 (256)
                      | ..+..+..||.+....                              .+                   |+|+||+++|.
T Consensus        84 g~~~~~~~~~g~~~~~~~------------------------------~~-------------------g~~aey~v~p~  114 (347)
T KOG1198|consen   84 GDDVVGGWVHGDAVVAFL------------------------------SS-------------------GGLAEYVVVPE  114 (347)
T ss_pred             ccccccceEeeeEEeecc------------------------------CC-------------------CceeeEEEcch
Confidence            4 2233455555443221                              22                   39999999999


Q ss_pred             CcEEEcCCCCChhhhhhchhhHHHHHHHHHHhc------CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCccceecceee
Q 025173          172 THVVKITPDIPLDIACLLSCGVSTGLGAAWKVA------EVEEGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHILPTLI  244 (256)
Q Consensus       172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~------~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~~~~v  244 (256)
                      ..++++|+++++++||.++.++.|||.++....      +.++|++|||+|+ |++|++++|+|++.|+.+++     .+
T Consensus       115 ~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~-----t~  189 (347)
T KOG1198|consen  115 KLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVV-----TA  189 (347)
T ss_pred             hhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEE-----EE
Confidence            999999999999999999999999999999999      8999999999987 89999999999999954222     34


Q ss_pred             EeechhhhhhcC
Q 025173          245 LMSEVQEMYSQL  256 (256)
Q Consensus       245 ~~~~~~~~~~~l  256 (256)
                      +..+..+..+.|
T Consensus       190 ~s~e~~~l~k~l  201 (347)
T KOG1198|consen  190 CSKEKLELVKKL  201 (347)
T ss_pred             cccchHHHHHHc
Confidence            555666666543

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.89  E-value=7.5e-22  Score=174.46  Aligned_cols=163  Identities=28%  Similarity=0.388  Sum_probs=143.0

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++.+..++.+  +.+++.+.|.+++++|+||+.++++|+.|++...+.++....+|.++|||++|+|+.+|+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            678888776655  666777777788999999999999999999998876654344678999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|+....                              +|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~------------------------------~~-------------------~~~~~~~~~~~~~~~ip~~  111 (325)
T TIGR02824        81 VGDRVCALVA------------------------------GG-------------------GYAEYVAVPAGQVLPVPEG  111 (325)
T ss_pred             CCCEEEEccC------------------------------CC-------------------cceeEEEecHHHcEeCCCC
Confidence            9999986421                              12                   8999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++.+++.++.++.|+|+++.+...+.++++|+|+|+ |++|++++++++..|+.
T Consensus       112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~  166 (325)
T TIGR02824       112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGAR  166 (325)
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCE
Confidence            9999999999999999998888899999999999997 99999999999999987

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.89  E-value=6.6e-22  Score=174.00  Aligned_cols=160  Identities=29%  Similarity=0.348  Sum_probs=139.2

Q ss_pred             eeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        24 ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||+.+..++.+  +.+.+.+.|.+.++||+||+.++++|+.|++...+.++.  .+|.++|||++|+|+.+|+++.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~   78 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAVGPGVTGFKV   78 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEECCCCCCCCC
Confidence            45666655543  566677777788999999999999999999998887653  45778999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      ||+|++..                              ..                   |+|++|+.++.+.++++|+++
T Consensus        79 G~~V~~~~------------------------------~~-------------------g~~~~~~~~~~~~~~~~p~~~  109 (320)
T cd05286          79 GDRVAYAG------------------------------PP-------------------GAYAEYRVVPASRLVKLPDGI  109 (320)
T ss_pred             CCEEEEec------------------------------CC-------------------CceeEEEEecHHHceeCCCCC
Confidence            99998542                              01                   289999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +.++++.+.....++|+++.+..++.+|++|+|+|+ |++|++++++|+.+|+.
T Consensus       110 ~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~  163 (320)
T cd05286         110 SDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGAT  163 (320)
T ss_pred             CHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE
Confidence            999999988899999998888889999999999997 99999999999999987

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.89  E-value=8.9e-22  Score=174.22  Aligned_cols=152  Identities=26%  Similarity=0.360  Sum_probs=128.6

Q ss_pred             ecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhH-cCCCCC-CCCCCeeeeeeeeEEEEEccCCCcccCCCCEEe
Q 025173           29 RIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW-RSTQPP-MAVFPRILGHEAVGVVESVGGGVEEVREGDLVL  106 (256)
Q Consensus        29 ~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~-~g~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~  106 (256)
                      ++.+. +++++++.|++.++||+||+.++++|++|++.+ .|..+. ...+|.++|+|++|+|+++|++++++++||+|+
T Consensus         2 ~~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   80 (312)
T cd08269           2 TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA   80 (312)
T ss_pred             CCCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence            34455 889999999999999999999999999999988 665432 123478999999999999999999999999998


Q ss_pred             eecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhh
Q 025173          107 PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA  186 (256)
Q Consensus       107 ~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~a  186 (256)
                      +...                                                  |+|++|+.++.+.++++|+++  ..+
T Consensus        81 ~~~~--------------------------------------------------g~~~~~~~v~~~~~~~lP~~~--~~~  108 (312)
T cd08269          81 GLSG--------------------------------------------------GAFAEYDLADADHAVPLPSLL--DGQ  108 (312)
T ss_pred             EecC--------------------------------------------------CcceeeEEEchhheEECCCch--hhh
Confidence            6431                                                  289999999999999999998  233


Q ss_pred             hhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          187 CLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       187 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +....++.++++++. .++++++++|+|+|+|++|.+++|+|+..|+.
T Consensus       109 ~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~  155 (312)
T cd08269         109 AFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGAR  155 (312)
T ss_pred             HHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence            332367889999765 88899999999998899999999999999987

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.89  E-value=7.5e-22  Score=173.26  Aligned_cols=166  Identities=25%  Similarity=0.361  Sum_probs=142.6

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCC--CCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP--PMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~--~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      ||++++..++..  +.+++.+.|.++++||+||+.++++|+.|+..+.+...  ....+|..+|||++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            688998877754  45667777788999999999999999999999887653  12345789999999999999999999


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      +++||+|+.....                           ..+                   |+|++|+.++.+.++++|
T Consensus        81 ~~~G~~V~~~~~~---------------------------~~~-------------------g~~~~~~~~~~~~~~~~p  114 (309)
T cd05289          81 FKVGDEVFGMTPF---------------------------TRG-------------------GAYAEYVVVPADELALKP  114 (309)
T ss_pred             CCCCCEEEEccCC---------------------------CCC-------------------CcceeEEEecHHHhccCC
Confidence            9999999865310                           011                   289999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++.+++.+++.+.++++++.+...+.+|++|+|+|+ |.+|++++++|+..|+.
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~  171 (309)
T cd05289         115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGAR  171 (309)
T ss_pred             CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE
Confidence            999999999999999999998877777999999999998 99999999999999987

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08251 polyketide_synthase polyketide synthase

Probab=99.88  E-value=1.3e-21  Score=171.53  Aligned_cols=145  Identities=30%  Similarity=0.379  Sum_probs=129.4

Q ss_pred             cCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCC
Q 025173           42 VDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKS  121 (256)
Q Consensus        42 ~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~  121 (256)
                      .|++.+++|+||+.++++|+.|++.+.+.++....+|.++|+|++|+|+++|+++.++++||+|++....          
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~----------   71 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE----------   71 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence            5778899999999999999999999988765434568899999999999999999999999999865321          


Q ss_pred             CCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHH
Q 025173          122 PKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAW  201 (256)
Q Consensus       122 g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~  201 (256)
                                        .+                   |+|++|+.++.+.++++|+++++++++.++..+.+||+++ 
T Consensus        72 ------------------~~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-  113 (303)
T cd08251          72 ------------------SM-------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-  113 (303)
T ss_pred             ------------------CC-------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence                              12                   2899999999999999999999999999999999999986 


Q ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          202 KVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       202 ~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +...+++|++|+|+|+ |++|++++|+|+.+|+.
T Consensus       114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~  147 (303)
T cd08251         114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAE  147 (303)
T ss_pred             HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCE
Confidence            5789999999999976 99999999999999987

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.88  E-value=3.6e-21  Score=171.58  Aligned_cols=159  Identities=23%  Similarity=0.339  Sum_probs=138.6

Q ss_pred             eeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        24 ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      |++++...+.+  +.+++.+.|.|.++||+||+.++++|+.|.+.+.+.++.....|.++|||++|+|+.+|+.+.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            45666655432  7777778788899999999999999999999988876433355778999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      ||+|+....                              +                   |+|++|+.++.+.++++|+++
T Consensus        81 G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~~~  111 (337)
T cd08275          81 GDRVMGLTR------------------------------F-------------------GGYAEVVNVPADQVFPLPDGM  111 (337)
T ss_pred             CCEEEEecC------------------------------C-------------------CeeeeEEEecHHHeEECCCCC
Confidence            999986532                              1                   289999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHc
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLK  231 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~  231 (256)
                      ++++++.+++++.++|+++.+..++++|++|+|+|+ |.+|++++++|+..
T Consensus       112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~  162 (337)
T cd08275         112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV  162 (337)
T ss_pred             CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc
Confidence            999999999999999999888899999999999998 99999999999998

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.88  E-value=2.5e-21  Score=171.25  Aligned_cols=153  Identities=26%  Similarity=0.332  Sum_probs=134.5

Q ss_pred             EEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCC
Q 025173           36 VMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDC  113 (256)
Q Consensus        36 ~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c  113 (256)
                      ++++.+.|+++++||+|++.++++|++|++.+.|.++.  ....|..+|||++|+|+++|+++.++++||+|+.....  
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~--   92 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP--   92 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence            77888999999999999999999999999998886532  12346789999999999999999999999999865321  


Q ss_pred             CCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhH
Q 025173          114 GECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV  193 (256)
Q Consensus       114 ~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~  193 (256)
                                               ...                   |+|++|+.++.+.++++|+++++++++.+++++
T Consensus        93 -------------------------~~~-------------------g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~  128 (319)
T cd08267          93 -------------------------KGG-------------------GALAEYVVAPESGLAKKPEGVSFEEAAALPVAG  128 (319)
T ss_pred             -------------------------CCC-------------------ceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence                                     011                   289999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          194 STGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       194 ~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+||+++.+...+++|++|+|+|+ |++|++++++|+.+|++
T Consensus       129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~  170 (319)
T cd08267         129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAH  170 (319)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCE
Confidence            999999877777999999999998 99999999999999997

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.87  E-value=6.1e-21  Score=168.31  Aligned_cols=162  Identities=29%  Similarity=0.444  Sum_probs=139.3

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCC-CCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPK-AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~-~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~   99 (256)
                      |+++++..++.+  +++.+.+ |.+. +++++||+.++++|++|++.+.+.+......|.++|||++|+|+.+|+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            688888755443  6666776 6666 59999999999999999999887764323446789999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (256)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~  179 (256)
                      ++||+|+....                              +                   |+|++|+.++.+.++++|+
T Consensus        80 ~~G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~  110 (323)
T cd08241          80 KVGDRVVALTG------------------------------Q-------------------GGFAEEVVVPAAAVFPLPD  110 (323)
T ss_pred             CCCCEEEEecC------------------------------C-------------------ceeEEEEEcCHHHceeCCC
Confidence            99999986531                              1                   2899999999999999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++..+++.+.....+|+.++.+...+.++++|+|+|+ |++|++++++|+..|+.
T Consensus       111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~  166 (323)
T cd08241         111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGAR  166 (323)
T ss_pred             CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCE
Confidence            99999998888899999998877889999999999998 99999999999999987

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.87  E-value=5.8e-21  Score=170.54  Aligned_cols=158  Identities=23%  Similarity=0.216  Sum_probs=130.0

Q ss_pred             ceeEEEecCCC----C--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccC
Q 025173           23 CRAAISRIPGK----P--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGG   94 (256)
Q Consensus        23 ~ka~~~~~~g~----~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~   94 (256)
                      .|+|++.+..+    +  +++++++.|++.++||+||+.++++|+.|.....+....  +...+.++|+|++|+|+++|.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            46677765431    1  888999999999999999999999999887665553211  112356789999999999996


Q ss_pred             CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC-Cc
Q 025173           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-TH  173 (256)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~-~~  173 (256)
                      .  ++++||+|+..                                                    ++|++|+.++. +.
T Consensus        82 ~--~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~  107 (329)
T cd05288          82 P--DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASG  107 (329)
T ss_pred             C--CCCCCCEEecc----------------------------------------------------cceEEEEEecchhh
Confidence            4  79999999742                                                    16999999999 99


Q ss_pred             EEEcCCCCC--hhhhhh-chhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          174 VVKITPDIP--LDIACL-LSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       174 ~~~~p~~l~--~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++|++++  +.+++. +++++.|||+++.+.+.+.++++|||+|+ |++|++++|+|+..|+.
T Consensus       108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~  172 (329)
T cd05288         108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGAR  172 (329)
T ss_pred             cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCE
Confidence            999999995  445555 88899999999888888999999999996 99999999999999986

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.85  E-value=2.3e-20  Score=161.77  Aligned_cols=134  Identities=27%  Similarity=0.332  Sum_probs=122.2

Q ss_pred             CeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCC
Q 025173           48 GEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC  127 (256)
Q Consensus        48 ~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c  127 (256)
                      +||+||+.++++|++|++...+.++   .+|.++|||++|+|+++|+.+..+++||+|+....                 
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~---~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~-----------------   60 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP---GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAP-----------------   60 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC---CCCCccceeeeEEEEeecCCccCCCCCCEEEEEec-----------------
Confidence            5899999999999999999988752   35789999999999999999999999999986421                 


Q ss_pred             CcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCC
Q 025173          128 SKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVE  207 (256)
Q Consensus       128 ~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~  207 (256)
                                                       |+|+||+.++.+.++++|+++++.+++.++++..|+|.++.+...++
T Consensus        61 ---------------------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  107 (293)
T cd05195          61 ---------------------------------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQ  107 (293)
T ss_pred             ---------------------------------CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccC
Confidence                                             28999999999999999999999999999999999999988888999


Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +|++|+|+|+ |++|++++|+|+.+|++
T Consensus       108 ~g~~vlv~g~~g~~g~~~~~~a~~~g~~  135 (293)
T cd05195         108 KGESVLIHAAAGGVGQAAIQLAQHLGAE  135 (293)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHcCCE
Confidence            9999999986 99999999999999987

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.82  E-value=4.1e-19  Score=153.93  Aligned_cols=129  Identities=26%  Similarity=0.328  Sum_probs=117.6

Q ss_pred             EEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCc
Q 025173           52 IKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFV  131 (256)
Q Consensus        52 Vkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~  131 (256)
                      ||+.++++|++|++.+.+.++    .|.++|||++|+|+++|+.+..+++||+|+....                     
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~---------------------   56 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP---------------------   56 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC---------------------
Confidence            789999999999999988653    3578999999999999999999999999986421                     


Q ss_pred             cCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCE
Q 025173          132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGST  211 (256)
Q Consensus       132 ~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  211 (256)
                                                   |+|++|+.++.+.++++|+++++++++.+.+.+.++|+++.+...+.+|++
T Consensus        57 -----------------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~  107 (288)
T smart00829       57 -----------------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGES  107 (288)
T ss_pred             -----------------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCE
Confidence                                         289999999999999999999999999999999999998878889999999


Q ss_pred             EEEECC-CHHHHHHHHHHHHcCCC
Q 025173          212 VAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       212 VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      |+|+|+ |.+|++++++|+..|++
T Consensus       108 vlv~g~~~~~g~~~~~~a~~~g~~  131 (288)
T smart00829      108 VLIHAAAGGVGQAAIQLAQHLGAE  131 (288)
T ss_pred             EEEecCCcHHHHHHHHHHHHcCCE
Confidence            999996 99999999999999987

Enoylreductase in Polyketide synthases.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.79  E-value=8.7e-19  Score=152.09  Aligned_cols=158  Identities=25%  Similarity=0.245  Sum_probs=124.1

Q ss_pred             cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEcc--CCCcccCCCCEEeeecccC
Q 025173           35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG--GGVEEVREGDLVLPVFQGD  112 (256)
Q Consensus        35 l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG--~~v~~~~vGd~V~~~~~~~  112 (256)
                      |++++.++|+|+++|||+|+.|.++++.... +....+. .-.|+-+|-..+|.++...  ++...|++||.|+...   
T Consensus        27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRg-rm~d~~S-Y~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~---  101 (340)
T COG2130          27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRG-RMSDAPS-YAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS---  101 (340)
T ss_pred             ceeEeccCCCCCcCceEEEEEEeccCHHHee-cccCCcc-cCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc---
Confidence            9999999999999999999999999984332 3333332 3456667766554444332  5567899999997532   


Q ss_pred             CCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChh--hhhhch
Q 025173          113 CGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLD--IACLLS  190 (256)
Q Consensus       113 c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~--~aa~l~  190 (256)
                                                                       +|+||.+++.+.+.++.++.-+.  ....+.
T Consensus       102 -------------------------------------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLG  132 (340)
T COG2130         102 -------------------------------------------------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLG  132 (340)
T ss_pred             -------------------------------------------------cceEEEeechhhceecCCCCCCcchHHhhcC
Confidence                                                             79999999999999998654322  233466


Q ss_pred             hhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCccceecceeeEeechhhhhh
Q 025173          191 CGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYS  254 (256)
Q Consensus       191 ~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~~  254 (256)
                      .+..|||.+|.+.++.++||+|+|.+| |++|..+.|+||.+|++        +|.+...+|+.+
T Consensus       133 mpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~r--------VVGiaGg~eK~~  189 (340)
T COG2130         133 MPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCR--------VVGIAGGAEKCD  189 (340)
T ss_pred             CchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCe--------EEEecCCHHHHH
Confidence            789999999999999999999999998 99999999999999999        677777666654

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.71  E-value=1.6e-16  Score=138.70  Aligned_cols=111  Identities=31%  Similarity=0.356  Sum_probs=99.8

Q ss_pred             CCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCccccc
Q 025173           69 STQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD  148 (256)
Q Consensus        69 g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~  148 (256)
                      |.+|.  ++|.++|||++|+|+++|+++++|++||+|+...                                       
T Consensus        14 ~~~~~--~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~---------------------------------------   52 (277)
T cd08255          14 GTEKL--PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG---------------------------------------   52 (277)
T ss_pred             cCccC--cCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC---------------------------------------
Confidence            55554  5889999999999999999999999999998531                                       


Q ss_pred             CCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH
Q 025173          149 LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRI  228 (256)
Q Consensus       149 ~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla  228 (256)
                                   .|++|+.++.+.++++|+++++++++.+ +.+.|||+++ ...++++|++|+|+|+|++|++++++|
T Consensus        53 -------------~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a  117 (277)
T cd08255          53 -------------PHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLA  117 (277)
T ss_pred             -------------CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHH
Confidence                         6899999999999999999999999888 7899999986 578999999999999899999999999


Q ss_pred             HHcCCCc
Q 025173          229 HLKFTRH  235 (256)
Q Consensus       229 ~~~G~~~  235 (256)
                      +.+|.++
T Consensus       118 ~~~g~~~  124 (277)
T cd08255         118 KAAGARE  124 (277)
T ss_pred             HHcCCCc
Confidence            9999873

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.60  E-value=6.8e-14  Score=121.49  Aligned_cols=154  Identities=25%  Similarity=0.259  Sum_probs=114.2

Q ss_pred             EEeecC-CCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeee----eeeEEEEEccCCCcccCCCCEEeeecccC
Q 025173           38 EEIEVD-PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH----EAVGVVESVGGGVEEVREGDLVLPVFQGD  112 (256)
Q Consensus        38 ~~~~~p-~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~----e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~  112 (256)
                      .+.+.+ ++++++||||.+|.+..|.....+....+...-.|+.+|.    .++|+|++.  ...++++||.|....   
T Consensus        27 ~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g~~---  101 (343)
T KOG1196|consen   27 TTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWGIV---  101 (343)
T ss_pred             eeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEEec---
Confidence            344433 4689999999999999887665444333322223444443    689999994  556899999997543   


Q ss_pred             CCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCc--EEEcC--CCCChhhhh-
Q 025173          113 CGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH--VVKIT--PDIPLDIAC-  187 (256)
Q Consensus       113 c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~--~~~~p--~~l~~~~aa-  187 (256)
                                                                       +|.||.+++.+.  .++++  .++++.... 
T Consensus       102 -------------------------------------------------gWeeysii~~~~~~~~ki~~~~~~pLs~ylg  132 (343)
T KOG1196|consen  102 -------------------------------------------------GWEEYSVITPNDLEHFKIQHPTDVPLSYYLG  132 (343)
T ss_pred             -------------------------------------------------cceEEEEecCcchhcccCCCCCccCHhhhhh
Confidence                                                             699999997643  34443  455554433 


Q ss_pred             hchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173          188 LLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY  253 (256)
Q Consensus       188 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~  253 (256)
                      .+..+..|||.++.+....++|++|+|.|| |++|+++.|+||.+|.+        +|.+...+|+.
T Consensus       133 ~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~--------VVGsaGS~EKv  191 (343)
T KOG1196|consen  133 LLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCY--------VVGSAGSKEKV  191 (343)
T ss_pred             ccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCE--------EEEecCChhhh
Confidence            456789999999999999999999999998 99999999999999997        56666666653

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.50  E-value=4.6e-14  Score=139.02  Aligned_cols=141  Identities=18%  Similarity=0.167  Sum_probs=119.4

Q ss_pred             cEEEEeecC---CCCCCeEEEEEeeeecChhhHHhHcCCCCCC------CCCCeeeeeeeeEEEEEccCCCcccCCCCEE
Q 025173           35 LVMEEIEVD---PPKAGEVRIKILCTSLCHSDVTFWRSTQPPM------AVFPRILGHEAVGVVESVGGGVEEVREGDLV  105 (256)
Q Consensus        35 l~~~~~~~p---~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~------~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V  105 (256)
                      +++.+-|..   +..++.=+--|.|+.||+.|++.-.|..+..      ....+++|.|++|+-          +-|.||
T Consensus      1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd----------~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD----------ASGRRV 1498 (2376)
T ss_pred             eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------CCCcEE
Confidence            455554443   2357778899999999999999999988661      122478999999984          459999


Q ss_pred             eeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhh
Q 025173          106 LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI  185 (256)
Q Consensus       106 ~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~  185 (256)
                      ++.....                                                 ++++-+.++.+++|.+|+++..++
T Consensus      1499 M~mvpAk-------------------------------------------------sLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVPAK-------------------------------------------------SLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred             EEeeehh-------------------------------------------------hhhhhhhcchhhhhhCCcccchhh
Confidence            8765421                                                 688899999999999999999999


Q ss_pred             hhhchhhHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Q 025173          186 ACLLSCGVSTGLGAAWKVAEVEEGSTVAIFG-LGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       186 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G-aG~vG~~aiqla~~~G~~  234 (256)
                      |++++|.+.|+|+|+..+.+.++||+|||++ +|++|++||.+|.+.|.+
T Consensus      1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~ 1579 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCT 1579 (2376)
T ss_pred             cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCE
Confidence            9999999999999999999999999999995 599999999999999999

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.90  E-value=1.4e-05  Score=74.51  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=75.4

Q ss_pred             eeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccc
Q 025173           79 RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVL  158 (256)
Q Consensus        79 ~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~  158 (256)
                      ..-|.|+++.+.+++.+++.     +|++.+.. |++|.+|    ++.|.+...   .|...++                
T Consensus        88 ~~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~l~~----------------  138 (417)
T TIGR01035        88 ILTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKVLER----------------  138 (417)
T ss_pred             hcCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHHHHH----------------
Confidence            34688999999999888766     55555555 8899888    444544433   3333333                


Q ss_pred             cccceeeeEEecCCcEEE---c-CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          159 NVSSFTEYTVVDVTHVVK---I-TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       159 ~~g~~aey~~v~~~~~~~---~-p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                         .|++++.++. .+..   + +..+|...+|.         ....+..+..++++|+|+|+|.+|..+++.++..|+.
T Consensus       139 ---lf~~a~~~~k-~vr~~t~i~~~~vSv~~~Av---------~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~  205 (417)
T TIGR01035       139 ---LFQKAFSVGK-RVRTETDISAGAVSISSAAV---------ELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVG  205 (417)
T ss_pred             ---HHHHHHHHhh-hhhhhcCCCCCCcCHHHHHH---------HHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCC
Confidence               8999888865 3332   2 22333332221         1112334446789999999999999999999999866


Q ss_pred             c
Q 025173          235 H  235 (256)
Q Consensus       235 ~  235 (256)
                      .
T Consensus       206 ~  206 (417)
T TIGR01035       206 K  206 (417)
T ss_pred             E
Confidence            4

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.46  E-value=0.0048  Score=58.93  Aligned_cols=30  Identities=17%  Similarity=0.105  Sum_probs=27.8

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +..++++|+|+|+|.+|+++++.|+.+|++
T Consensus       161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~  190 (509)
T PRK09424        161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGAI  190 (509)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCE
Confidence            356899999999999999999999999996

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.52  E-value=0.03  Score=52.24  Aligned_cols=39  Identities=18%  Similarity=0.239  Sum_probs=33.2

Q ss_pred             HHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          196 GLGAAWKVAEV-EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       196 a~~~l~~~~~~-~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .|.++.+..++ -+|++|+|+|+|.+|+.+++.++..|++
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~  227 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGAR  227 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            45566665554 6899999999999999999999999997

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=95.01  E-value=0.079  Score=45.91  Aligned_cols=67  Identities=16%  Similarity=0.136  Sum_probs=41.4

Q ss_pred             ceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          162 SFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       162 ~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +|.+|.. +...++.+++++++..+.. +.... .+..+.  ..+.++++||-+|+|. |.+++.+++ .|+.+
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~h-~tt~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~  144 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGTH-PTTRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKK  144 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCCC-HHHHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCe
Confidence            4666644 6677888888887765542 11111 122121  2257899999999987 888876655 56654

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=94.89  E-value=0.016  Score=51.93  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=45.5

Q ss_pred             cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCC----CCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          173 HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEV----EEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       173 ~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~----~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ..+++|+.+..+.++... +.+.++.++ +.+..    -++.+|+|+|+|.+|..+++.++..|+..
T Consensus       140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av-~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~  204 (311)
T cd05213         140 KAIKVGKRVRTETGISRG-AVSISSAAV-ELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAE  204 (311)
T ss_pred             HHHHHHHHHhhhcCCCCC-CcCHHHHHH-HHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCE
Confidence            456778888888777654 555666654 33332    47899999999999999999999888763

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.76  E-value=0.12  Score=48.45  Aligned_cols=41  Identities=24%  Similarity=0.272  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          194 STGLGAAWKVAEVE-EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       194 ~ta~~~l~~~~~~~-~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ...|.++.+..++. .|++|+|+|.|.+|..+++.++.+|++
T Consensus       196 ~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~  237 (425)
T PRK05476        196 ESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGAR  237 (425)
T ss_pred             hhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence            34566665554554 899999999999999999999999997

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.85  E-value=0.13  Score=40.30  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=27.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP  237 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~  237 (256)
                      -++.+++|+|+|++|.+++..+...|++++.
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~   40 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEIT   40 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEE
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEE
Confidence            3589999999999999999999999998533

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.69  E-value=0.12  Score=50.09  Aligned_cols=30  Identities=27%  Similarity=0.354  Sum_probs=27.9

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ..++|++|+|+|+|+.|+++++.++..|++
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~  162 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGHA  162 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCe
Confidence            467899999999999999999999999987

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.41  E-value=0.15  Score=48.83  Aligned_cols=28  Identities=18%  Similarity=0.173  Sum_probs=26.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .++++|+|+|+|.+|++++++|+.+|+.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~  189 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAI  189 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            4679999999999999999999999997

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=93.37  E-value=0.085  Score=28.39  Aligned_cols=22  Identities=18%  Similarity=0.199  Sum_probs=15.7

Q ss_pred             ceeEEEecCCCCcEEEEeecCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPP   45 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~   45 (256)
                      |||++++++++ .+++++|.|.+
T Consensus         1 MkAv~y~G~~~-v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKD-VRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTE-EEEEEE----S
T ss_pred             CcceEEeCCCc-eEEEECCCccc
Confidence            89999999998 99999998865

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.30  E-value=0.21  Score=46.58  Aligned_cols=39  Identities=21%  Similarity=0.304  Sum_probs=32.5

Q ss_pred             HHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          196 GLGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       196 a~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++.++.+..+ ...|++|+|+|.|.+|+.+++.++..|++
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~  220 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGAR  220 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCE
Confidence            4555555544 46899999999999999999999999998

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.67  E-value=0.19  Score=40.86  Aligned_cols=37  Identities=19%  Similarity=0.139  Sum_probs=28.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY  253 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~  253 (256)
                      .-+|+|+|+|.+|+.|+++++.+|++        .+..++..+..
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~--------v~~~d~~~~~~   56 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAE--------VVVPDERPERL   56 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-E--------EEEEESSHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCE--------EEeccCCHHHH
Confidence            36799999999999999999999999        45555554443

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.63  E-value=0.92  Score=40.43  Aligned_cols=27  Identities=22%  Similarity=0.449  Sum_probs=25.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .+.+|+|+|.|.+|+.+++.++.+|++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~  177 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGAN  177 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCE
Confidence            689999999999999999999999986

>PLN02494 adenosylhomocysteinase

Probab=91.31  E-value=0.48  Score=44.93  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             HHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          197 LGAAWKVAEV-EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       197 ~~~l~~~~~~-~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +.++.+..++ -.|++|+|+|.|.+|..+++.++..|++
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~  279 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGAR  279 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            5566666554 6799999999999999999999999997

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=91.15  E-value=0.41  Score=44.87  Aligned_cols=116  Identities=20%  Similarity=0.168  Sum_probs=64.4

Q ss_pred             eeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccc
Q 025173           79 RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVL  158 (256)
Q Consensus        79 ~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~  158 (256)
                      ..-|+|+++-+.+++.+++..-+|+.     .. |++|..    .+..|.....   .|...++                
T Consensus        90 ~~~g~ea~~hl~~V~~GldS~V~GE~-----qI-lgQvk~----a~~~a~~~g~---~g~~l~~----------------  140 (423)
T PRK00045         90 VHEGEEAVRHLFRVASGLDSMVLGEP-----QI-LGQVKD----AYALAQEAGT---VGTILNR----------------  140 (423)
T ss_pred             hcCCHHHHHHHHHHHhhhhhhhcCCh-----HH-HHHHHH----HHHHHHHcCC---chHHHHH----------------
Confidence            34699999999999998776444443     22 444431    1122211111   1111111                


Q ss_pred             cccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhc---CCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          159 NVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVA---EVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       159 ~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~---~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                         .|++.+.++        +.+..+.+ ....+.+.+++++....   .-.++++|+|+|+|.+|.++++.++..|+..
T Consensus       141 ---lf~~a~~~~--------k~v~~~t~-i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~  208 (423)
T PRK00045        141 ---LFQKAFSVA--------KRVRTETG-IGAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRK  208 (423)
T ss_pred             ---HHHHHHHHH--------hhHhhhcC-CCCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCe
Confidence               555544443        32222222 11223344455442221   1257899999999999999999999999853

>PRK08324 short chain dehydrogenase; Validated

Probab=90.97  E-value=0.28  Score=48.80  Aligned_cols=62  Identities=16%  Similarity=0.173  Sum_probs=44.0

Q ss_pred             ceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          162 SFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       162 ~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++|..+++..++.+ +.++.+++..-..          ......+|+++||+|+ |++|...++.+...|++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~  448 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGAC  448 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCE
Confidence            5667777777777766 6666666642100          0122346899999997 99999999999999986

>TIGR00518 alaDH alanine dehydrogenase

Probab=90.86  E-value=0.36  Score=44.41  Aligned_cols=27  Identities=26%  Similarity=0.176  Sum_probs=24.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++.+|+|+|+|.+|+.+++.++.+|++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~  192 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGAT  192 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCe
Confidence            345699999999999999999999996

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=90.05  E-value=0.62  Score=40.62  Aligned_cols=31  Identities=26%  Similarity=0.383  Sum_probs=26.4

Q ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          203 VAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       203 ~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .+.+++|++||.+|+|. |..++++++..|..
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~  102 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPT  102 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCC
Confidence            46789999999999988 98888888887764

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=89.98  E-value=1.5  Score=41.61  Aligned_cols=38  Identities=21%  Similarity=0.348  Sum_probs=31.1

Q ss_pred             HHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          197 LGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       197 ~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +.++.+..+ .-.|++|+|+|.|.+|..+++.++..|++
T Consensus       241 ~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~  279 (476)
T PTZ00075        241 IDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGAR  279 (476)
T ss_pred             HHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            344555443 34799999999999999999999999997

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=88.90  E-value=1.5  Score=35.81  Aligned_cols=49  Identities=14%  Similarity=0.141  Sum_probs=34.9

Q ss_pred             hhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCC
Q 025173          186 ACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGA-VGLSVLIRIHLKFTR  234 (256)
Q Consensus       186 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~-vG~~aiqla~~~G~~  234 (256)
                      ....+|....+...+.....--.|.+|+|+|+|. +|..+++.++..|++
T Consensus        21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~   70 (168)
T cd01080          21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNAT   70 (168)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCE
Confidence            3555665555555333333345789999999986 599899999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=88.12  E-value=1.4  Score=39.07  Aligned_cols=31  Identities=16%  Similarity=0.086  Sum_probs=26.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH  238 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~  238 (256)
                      .+.+|+|+|+|++|.+++..+...|+..+..
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I  156 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTI  156 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence            4688999999999999999999999874333

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=87.58  E-value=2.3  Score=35.56  Aligned_cols=28  Identities=36%  Similarity=0.466  Sum_probs=25.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      -.|.+|+|+|.|.+|..+++.+...|++
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~   53 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAK   53 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            3578999999999999999999999998

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=87.07  E-value=2.2  Score=37.57  Aligned_cols=35  Identities=17%  Similarity=0.073  Sum_probs=27.7

Q ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173          204 AEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH  238 (256)
Q Consensus       204 ~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~  238 (256)
                      .+...+++++|+|+|+.+.+++.-++..|+.++..
T Consensus       117 ~~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i  151 (272)
T PRK12550        117 YQVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTI  151 (272)
T ss_pred             cCCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            34455679999999999999999998999874333

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=86.68  E-value=2.2  Score=35.21  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=22.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++.+++|+|+ |.+|..+++.+...|++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~   54 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGAR   54 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence            5789999997 99999888888777865

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=86.14  E-value=1.2  Score=43.39  Aligned_cols=33  Identities=18%  Similarity=0.172  Sum_probs=28.6

Q ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          202 KVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       202 ~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ...+.+.|++|||+|+ |.+|...++.+...|++
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~  106 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGFR  106 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCCe
Confidence            4556778999999998 99999999988888887

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=86.09  E-value=1.2  Score=34.46  Aligned_cols=38  Identities=18%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEe
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILM  246 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~  246 (256)
                      ..+|+|.|+|++|...+..+-..|..+...+..+.+-.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~   39 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEP   39 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceee
Confidence            46899999999999999999999998877777776543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=85.92  E-value=2.2  Score=37.84  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=26.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ..+|++++|.|+|+.+.+++.-++..|..+
T Consensus       123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~  152 (283)
T COG0169         123 DVTGKRVLILGAGGAARAVAFALAEAGAKR  152 (283)
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHcCCCE
Confidence            346899999999999999999999999864

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=85.86  E-value=3.6  Score=29.25  Aligned_cols=40  Identities=18%  Similarity=0.230  Sum_probs=30.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEe
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILM  246 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~  246 (256)
                      -.+.+++|+|+|.+|..+++.+...+...+....+|+++.
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi~i~   60 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDILVT   60 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEEE
Confidence            4578999999999999999999988766555555555443

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=85.80  E-value=2.6  Score=37.08  Aligned_cols=29  Identities=17%  Similarity=0.258  Sum_probs=25.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ..+.+++|+|+|++|.+++..+...|..+
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~  149 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAE  149 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCE
Confidence            45678999999999999999999999653

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=85.78  E-value=2.7  Score=34.18  Aligned_cols=48  Identities=17%  Similarity=0.313  Sum_probs=31.8

Q ss_pred             HHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhh
Q 025173          196 GLGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEM  252 (256)
Q Consensus       196 a~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~  252 (256)
                      .+.++.+..+ .-.|.+++|.|=|-+|.-.++.++.+|++         |.+.|.++.
T Consensus         9 ~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~---------V~V~e~DPi   57 (162)
T PF00670_consen    9 LVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGAR---------VTVTEIDPI   57 (162)
T ss_dssp             HHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-E---------EEEE-SSHH
T ss_pred             HHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCE---------EEEEECChH
Confidence            3444555544 45789999999999999999999999999         555555543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=85.61  E-value=1.3  Score=37.14  Aligned_cols=39  Identities=18%  Similarity=0.133  Sum_probs=33.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS  247 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~  247 (256)
                      ..+|+|+|+|++|..+++.+...|..+...+.++.+-.+
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~s   59 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLS   59 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEccc
Confidence            577999999999999999999999988777777765433

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=85.60  E-value=1.1  Score=38.74  Aligned_cols=39  Identities=21%  Similarity=0.180  Sum_probs=32.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS  247 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~  247 (256)
                      +.+|+|.|+|++|..+++.+...|..+...+..+.|-.+
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~s   62 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLS   62 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccccc
Confidence            367999999999999999999999998777777766544

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=85.00  E-value=1.8  Score=35.37  Aligned_cols=28  Identities=36%  Similarity=0.468  Sum_probs=25.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      -.|.+|.|+|.|.+|...++.++..|.+
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~   61 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGMR   61 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT-E
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCce
Confidence            3689999999999999999999999997

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=84.91  E-value=2.8  Score=38.83  Aligned_cols=45  Identities=16%  Similarity=0.042  Sum_probs=33.6

Q ss_pred             chhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          189 LSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +..+..+.+..+.+..++++|++||-+|+| .|.++..+++..|++
T Consensus       148 L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~~  192 (383)
T PRK11705        148 LEEAQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGVS  192 (383)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCCE
Confidence            344445555556778889999999999984 566778888877766

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=84.67  E-value=2.6  Score=37.37  Aligned_cols=33  Identities=18%  Similarity=0.151  Sum_probs=26.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcccee
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHI  239 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~  239 (256)
                      ..+.+++|+|+|+.+.+++.-+...|+..+..+
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~  157 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVA  157 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence            347899999999999998888888998753333

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=84.52  E-value=1.7  Score=38.44  Aligned_cols=32  Identities=13%  Similarity=0.105  Sum_probs=26.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcccee
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHI  239 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~  239 (256)
                      .+.+++|+|+|+.+.+++.-+...|+.++..+
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~  155 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVI  155 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEE
Confidence            57899999999999999999999998754333

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08328 hypothetical protein; Provisional

Probab=84.47  E-value=1.3  Score=38.04  Aligned_cols=37  Identities=19%  Similarity=0.126  Sum_probs=30.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeE
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLIL  245 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~  245 (256)
                      +.+|+|+|+|++|..+++.+-..|..+...+..+.+-
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve   63 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE   63 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence            4679999999999999999999999876666666543

>PRK05866 short chain dehydrogenase; Provisional

Probab=84.38  E-value=1.7  Score=38.32  Aligned_cols=27  Identities=11%  Similarity=0.209  Sum_probs=23.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.+++|+|+ |++|...++.+...|++
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~   66 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGAT   66 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence            3578999998 99999999888888887

>PLN02780 ketoreductase/ oxidoreductase

Probab=84.25  E-value=1.8  Score=38.86  Aligned_cols=27  Identities=19%  Similarity=0.169  Sum_probs=23.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|.+++|+|+ +++|...++.+...|++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~   79 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLN   79 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCC
Confidence            5899999998 99999888877778887

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=83.12  E-value=4.1  Score=37.93  Aligned_cols=59  Identities=22%  Similarity=0.187  Sum_probs=40.7

Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhh
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEV-EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQE  251 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~-~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~  251 (256)
                      .++|-...+.+.+- . +.+..+. -.|.+|.|.|-|.+|..+++++...|++        +|.+++...
T Consensus       182 r~~aTg~Gv~~~~~-~-a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAk--------vva~sds~g  241 (411)
T COG0334         182 RSEATGYGVFYAIR-E-ALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAK--------VVAVSDSKG  241 (411)
T ss_pred             CCcccceehHHHHH-H-HHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCE--------EEEEEcCCC
Confidence            34444444444433 2 2334444 4899999999999999999999989999        666665543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=83.05  E-value=3.9  Score=35.74  Aligned_cols=29  Identities=17%  Similarity=0.221  Sum_probs=24.2

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ...+.+++|+|+|++|.+++..+...|.+
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~  142 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCN  142 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCE
Confidence            34578999999999999988888888865

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=82.80  E-value=2.1  Score=35.91  Aligned_cols=39  Identities=28%  Similarity=0.238  Sum_probs=32.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS  247 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~  247 (256)
                      ..+|+|+|+|++|...++.+-..|..+...+.++.+-.+
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~s   59 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPS   59 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccc
Confidence            467999999999999999999999987777777765443

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=82.73  E-value=5.2  Score=35.46  Aligned_cols=27  Identities=26%  Similarity=0.493  Sum_probs=25.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .|++|+|+|.|.+|..+++.++..|++
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~~  176 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGAR  176 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCCE
Confidence            578999999999999999999999986

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=82.70  E-value=2.1  Score=37.10  Aligned_cols=40  Identities=15%  Similarity=0.156  Sum_probs=33.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeec
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSE  248 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~  248 (256)
                      ..+|+|+|+|++|..+++.+...|..+...+..+.|-.++
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sN   71 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSN   71 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcch
Confidence            4689999999999999999999999888888777765443

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=82.64  E-value=4.5  Score=38.30  Aligned_cols=28  Identities=25%  Similarity=0.266  Sum_probs=26.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      -.|.+|+|.|.|.+|..+++.+...|++
T Consensus       235 l~Gk~VaVqG~GnVg~~aa~~L~e~Gak  262 (454)
T PTZ00079        235 LEGKTVVVSGSGNVAQYAVEKLLQLGAK  262 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            3688999999999999999999999999

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=82.63  E-value=4.1  Score=34.76  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=29.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC--ccceecce
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR--HTPHILPT  242 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~--~~~~~~~~  242 (256)
                      -.+.+|+|+|+|+.|..++..+...|..  ++..+.++
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            4568999999999999999888888987  65555554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=82.55  E-value=5.2  Score=33.99  Aligned_cols=36  Identities=31%  Similarity=0.443  Sum_probs=30.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechh
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQ  250 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~  250 (256)
                      -.|.+|+|.|-|.+|..+++++...|++        +|.+++.+
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~--------vV~vsD~~   56 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGK--------VLAVSDPD   56 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCE--------EEEEEcCC
Confidence            3588999999999999999999999988        55555544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK08223 hypothetical protein; Validated

Probab=82.40  E-value=1.5  Score=38.98  Aligned_cols=40  Identities=25%  Similarity=0.153  Sum_probs=33.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeec
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSE  248 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~  248 (256)
                      ..+|+|+|+|++|..+++.+-.+|..+...+..|.|-.++
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SN   66 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRN   66 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhc
Confidence            5679999999999999999999999977777777655443

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=82.16  E-value=5.3  Score=34.86  Aligned_cols=28  Identities=25%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      -+|.+|+|.|-|.+|+.+++++..+|++
T Consensus        36 l~g~~vaIqGfGnVG~~~a~~L~e~Gak   63 (254)
T cd05313          36 LKGKRVAISGSGNVAQYAAEKLLELGAK   63 (254)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            3688999999999999999999999999

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=82.12  E-value=2.2  Score=36.38  Aligned_cols=39  Identities=13%  Similarity=0.137  Sum_probs=33.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS  247 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~  247 (256)
                      ..+|+|.|+|++|..++..+-..|..+...+..+.+-.+
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~s   59 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELS   59 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCc
Confidence            468999999999999999999999998888877776444

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=81.68  E-value=2.7  Score=36.48  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=28.3

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173          205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHT  236 (256)
Q Consensus       205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~  236 (256)
                      ...|-.+++|.|+|.+++..+++|+.+|++.+
T Consensus        96 ~~~p~~~L~IfGaG~va~~la~la~~lGf~V~  127 (246)
T TIGR02964        96 EAPPAPHVVLFGAGHVGRALVRALAPLPCRVT  127 (246)
T ss_pred             ccCCCCEEEEECCcHHHHHHHHHHhcCCCEEE
Confidence            35677899999999999999999999999943

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=81.65  E-value=2  Score=39.05  Aligned_cols=37  Identities=16%  Similarity=0.043  Sum_probs=31.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeE
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLIL  245 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~  245 (256)
                      +.+|+|+|+|++|..+++.+-.+|..+...+.+|.|-
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve   60 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVE   60 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            4679999999999999999999999877777777653

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=81.59  E-value=3.5  Score=36.56  Aligned_cols=31  Identities=13%  Similarity=0.344  Sum_probs=25.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH  238 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~  238 (256)
                      .+.+++|+|+|++|.+++..+...|++++..
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I  155 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITI  155 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            5788999999999999888888889874433

>PRK06196 oxidoreductase; Provisional

Probab=81.38  E-value=2.5  Score=37.53  Aligned_cols=27  Identities=19%  Similarity=0.212  Sum_probs=23.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.+|||+|+ |++|..+++.+...|++
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~   52 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAH   52 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence            4679999998 99999988888888987

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=81.11  E-value=2.4  Score=35.82  Aligned_cols=37  Identities=14%  Similarity=0.167  Sum_probs=31.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeE
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLIL  245 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~  245 (256)
                      ..+|+|+|+|++|...++.+-..|..+...+..+.|-
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve   64 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVE   64 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence            4679999999999999999999999877777776543

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=81.09  E-value=2.5  Score=37.25  Aligned_cols=42  Identities=12%  Similarity=0.109  Sum_probs=35.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeech
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEV  249 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~  249 (256)
                      .+.+|+|+|+|++|..++..+-..|..+...+..+.+..++.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNl   70 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNT   70 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccc
Confidence            356899999999999999999999988888888777665544

>PRK06153 hypothetical protein; Provisional

Probab=80.87  E-value=1.8  Score=40.15  Aligned_cols=40  Identities=28%  Similarity=0.296  Sum_probs=34.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS  247 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~  247 (256)
                      .+.+|+|+|+|++|..+++.+-..|..+.+.+..|.|-.+
T Consensus       175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~S  214 (393)
T PRK06153        175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQH  214 (393)
T ss_pred             hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEeccc
Confidence            3578999999999999999999999998888888876544

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=80.82  E-value=2.2  Score=42.20  Aligned_cols=28  Identities=25%  Similarity=0.289  Sum_probs=25.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ..+++|+|+|+|+.|+.++..++..|++
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~  352 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVA  352 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCe
Confidence            3588999999999999999999999988

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=80.35  E-value=6.4  Score=30.76  Aligned_cols=27  Identities=22%  Similarity=0.234  Sum_probs=22.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFT  233 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~  233 (256)
                      ..+.+|+|+|+|.+|...++.+...|.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~   43 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGA   43 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            457899999999999999988888763

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=80.19  E-value=2.9  Score=39.63  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=25.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .+++|+|+|+|+.|+.++..++..|..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~  166 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQ  166 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence            688999999999999999999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	256
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		3e-47
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		4e-46
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		3e-44
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		4e-44
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		4e-44
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		5e-44
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		7e-42
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		2e-41
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		3e-41
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		3e-41
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		3e-41
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		3e-41
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		3e-41
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		9e-41
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		1e-40
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-40
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		3e-40
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		4e-40
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		4e-40
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		8e-40
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		1e-39
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-39
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		3e-39
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		5e-39
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		8e-39
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		3e-38
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-38
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		3e-38
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		4e-38
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		7e-38
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		5e-37
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		5e-17
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		8e-08
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		1e-07
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		1e-07
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		2e-06
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		2e-06
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		3e-06
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		5e-06
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		7e-06
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		2e-05

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/211 (45%), Positives = 130/211 (61%), Gaps = 3/211 (1%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           +T G++I C+AA++  P KPLV+E+++V PP+AGEVRIKIL T+LCH+D   W S + P 
Sbjct: 1   ATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTW-SGKDPE 59
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
            +FP IL                     D V+P +Q +C EC+ CKS K+N+C K  +  
Sbjct: 60  GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSAT 119
Query: 135 NQS-MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV 193
               M  D  +RF  + G+ I++ +  S+F++YTVV    V KI P  PLD  CLL CGV
Sbjct: 120 GVGIMMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGV 178
Query: 194 STGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
            TGLGA W  A+VE GS VAIFGLG VGL+V
Sbjct: 179 PTGLGAVWNTAKVEPGSNVAIFGLGTVGLAV 209

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 133/218 (61%), Gaps = 3/218 (1%)
Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
            D  ++S+T G++I C+AA++  P KPLV+E+++V PP+AGEVR+K+L T+LCH+D   W
Sbjct: 12  QDPNSSSATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTW 71
Query: 68  RSTQPPMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNIC 127
            S + P  +FP +L                     D V+P +Q +C EC+ CKS K+N+C
Sbjct: 72  -SGKDPEGLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 130
Query: 128 SKFVNKDNQS-MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
            K         M  D  +RF  + G+ I++ +  S+F++YTVV    V KI P  PL+  
Sbjct: 131 GKVRAATGVGVMMNDRKSRF-SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKV 189
Query: 187 CLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
           CLL CGV TGLGA W  A+VE GS VA+FGLG VGL+V
Sbjct: 190 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAV 227

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  174 bits (442), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 93/211 (44%), Positives = 128/211 (60%), Gaps = 2/211 (0%)
Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           +A ++I+C+AA++   GKPL +EEIEV PPKA EVRIKI+ T++CH+D  +  S   P  
Sbjct: 1   SANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTD-AYTLSGADPEG 59
Query: 76  VFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
            FP IL                     D V+P++   CGEC+ C +PK+N+C K      
Sbjct: 60  CFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQG 119
Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
           + +  DGT+RF   KG+ I + +  S+F+EYTVV    V KI P  PLD  CLL CG+ST
Sbjct: 120 KGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGIST 178
Query: 196 GLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           G GAA   A++E GS  A+FGLG VGL+V++
Sbjct: 179 GYGAAVNTAKLEPGSVCAVFGLGGVGLAVIM 209

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 93/210 (44%), Positives = 127/210 (60%), Gaps = 2/210 (0%)
Query: 17  AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           A ++I+C+AA++   GKPL +EEIEV PPKA EVRIKI+ T++CH+D  +  S   P   
Sbjct: 2   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTD-AYTLSGADPEGC 60
Query: 77  FPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           FP IL                     D V+P++   CGEC+ C +PK+N+C K      +
Sbjct: 61  FPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 120
Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            +  DGT+RF   KG+ I + +  S+F+EYTVV    V KI P  PLD  CLL CG+STG
Sbjct: 121 GLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 179
Query: 197 LGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
            GAA   A++E GS  A+FGLG VGL+V++
Sbjct: 180 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIM 209

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 93/210 (44%), Positives = 127/210 (60%), Gaps = 2/210 (0%)
Query: 17  AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           A ++I+C+AA++   GKPL +EEIEV PPKA EVRIKI+ T++CH+D  +  S   P   
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTD-AYTLSGADPEGC 59
Query: 77  FPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           FP IL                     D V+P++   CGEC+ C +PK+N+C K      +
Sbjct: 60  FPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 119
Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            +  DGT+RF   KG+ I + +  S+F+EYTVV    V KI P  PLD  CLL CG+STG
Sbjct: 120 GLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 178
Query: 197 LGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
            GAA   A++E GS  A+FGLG VGL+V++
Sbjct: 179 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIM 208

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  174 bits (441), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 93/210 (44%), Positives = 127/210 (60%), Gaps = 2/210 (0%)
Query: 17  AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           A ++I+C+AA++   GKPL +EEIEV PPKA EVRIKI+ T++CH+D  +  S   P   
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTD-AYTLSGADPEGC 59
Query: 77  FPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           FP IL                     D V+P++   CGEC+ C +PK+N+C K      +
Sbjct: 60  FPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 119
Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            +  DGT+RF   KG+ I + +  S+F+EYTVV    V KI P  PLD  CLL CG+STG
Sbjct: 120 GLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 178
Query: 197 LGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
            GAA   A++E GS  A+FGLG VGL+V++
Sbjct: 179 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIM 208

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  167 bits (422), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           +T GK+I+C+AA++    KPLV+EEIEVD P A E+RIKI+ T +CH+D+      +   
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
             FP +L                     + V+P+F   CGECR C+SPK+N C K    +
Sbjct: 61  G-FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANE 119
Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
           +  +      RF   KG  +   L  S+F++YTVV+   V KI P  PLD  CLL CGVS
Sbjct: 120 SPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVS 178
Query: 195 TGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIH 229
           TG GAA   A+VE GST A+FGLGAVGL+ ++  H
Sbjct: 179 TGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCH 213

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 127/216 (58%), Gaps = 11/216 (5%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C K    +
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLK----N 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           CG STG G+A KVA+V +GST A+FGLG VGLSV++
Sbjct: 174 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 127/216 (58%), Gaps = 11/216 (5%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C K    +
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLK----N 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           CG STG G+A KVA+V +GST A+FGLG VGLSV++
Sbjct: 174 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 127/216 (58%), Gaps = 11/216 (5%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C K    +
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLK----N 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           CG STG G+A KVA+V +GST A+FGLG VGLSV++
Sbjct: 174 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 127/216 (58%), Gaps = 11/216 (5%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C K    +
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLK----N 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           CG STG G+A KVA+V +GST A+FGLG VGLSV++
Sbjct: 174 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 127/216 (58%), Gaps = 11/216 (5%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C K    +
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLK----N 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           CG STG G+A KVA+V +GST A+FGLG VGLSV++
Sbjct: 174 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 127/216 (58%), Gaps = 11/216 (5%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C K    +
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLK----N 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           CG STG G+A KVA+V +GST A+FGLG VGLSV++
Sbjct: 174 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  163 bits (412), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 126/216 (58%), Gaps = 11/216 (5%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C K    +
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLK----N 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           CG STG G+A KVA+V +GST A+FGLG  GLSV++
Sbjct: 174 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGAGLSVIM 209

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 127/216 (58%), Gaps = 11/216 (5%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P++   CG+CR CK P+ N C K    +
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLK----N 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           CG STG G+A KVA+V +GST A+FGLG VGLSV++
Sbjct: 174 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 126/216 (58%), Gaps = 12/216 (5%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++   +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
           A  P I                      D V+P+F   CG+C  CK P+ N+C K     
Sbjct: 59  APLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK----- 113
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           N SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 114 NLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVG 172
Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           CG STG G+A KVA+V +GST A+FGLG VGLSV++
Sbjct: 173 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 208

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 126/216 (58%), Gaps = 11/216 (5%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+    CG+CR CK P+ N C K    +
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLK----N 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           CG STG G+A KVA+V +GST A+FGLG VGLSV++
Sbjct: 174 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  161 bits (407), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 126/216 (58%), Gaps = 11/216 (5%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P++   CG+CR CK P+ N C K    +
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLK----N 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           CG STG G+A KVA+V +GST A+FGLG  GLSV++
Sbjct: 174 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGAGLSVIM 209

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/215 (44%), Positives = 125/215 (58%), Gaps = 12/215 (5%)
Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           TAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++   +C SD      T   +A
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTL--VA 59
Query: 76  VFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
             P I                      D V+P+F   CG+C  CK P+ N+C K     N
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK-----N 114
Query: 136 QSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
            SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ C
Sbjct: 115 LSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGC 173
Query: 192 GVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           G STG G+A KVA+V +GST A+FGLG VGLSV++
Sbjct: 174 GFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 208

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  160 bits (404), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 124/214 (57%), Gaps = 7/214 (3%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSD--VTFWRSTQP 72
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++   +C SD  V       P
Sbjct: 1   STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTP 60
Query: 73  PMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
                P IL                     D V+P+F   CG+CR CK+P+SN C K   
Sbjct: 61  ----LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDL 116
Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            + +   +DGT RF    G+ IH+ + VS+F++YTVVD   V KI    PL+  CL+ CG
Sbjct: 117 GNPRGTLQDGTRRFT-CSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCG 175
Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
            STG G+A KVA+V  GST A+FGLG VGLSV++
Sbjct: 176 FSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVVM 209

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 6/216 (2%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
            T GK+I+C+AAI+   GKPL +EE+EV PPKA EVRI+I+ TSLCH+D T   S    +
Sbjct: 3   GTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGL 62
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN-- 132
           A FP I+                     D V+P++   C +C+ C SP +N+C K  N  
Sbjct: 63  A-FPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLK 121
Query: 133 --KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
               +Q +  D T+RF   KG+ +++    S+F++YTVV   ++ KI  D  L+  CLL 
Sbjct: 122 SPASDQQLMEDKTSRFT-CKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLG 180
Query: 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           CG STG GAA   A+V  GST A+FGLG VGLS ++
Sbjct: 181 CGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVM 216

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 123/214 (57%), Gaps = 7/214 (3%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSD--VTFWRSTQP 72
           STAGK+I+C+AA+     KP  +E++EV PPKA EVRIK++   +CH+D  V       P
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTDDHVVSGNLVTP 60
Query: 73  PMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
                P IL                     D V+P+F   CG+CR CK+P+SN C K   
Sbjct: 61  ----LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDL 116
Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            + +   +DGT RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ CG
Sbjct: 117 GNPRGTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCG 175
Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
            STG G+A  VA+V  GST A+FGLG VGLS ++
Sbjct: 176 FSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVM 209

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/211 (43%), Positives = 119/211 (56%), Gaps = 4/211 (1%)
Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           TAGK I C+AA++  P KPL +E I V PPKA EVRIKIL + +C SD +  +   P  +
Sbjct: 3   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP--S 60
Query: 76  VFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
            FP IL                     D V+P+F   CG CR CKS  SN C K      
Sbjct: 61  KFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK 120
Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
             +  D T+RF   +G+ I+N++  S+FTEYTVV    V KI P  PL+ +CL+ CG +T
Sbjct: 121 TGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFAT 178
Query: 196 GLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           G GAA   A+V  GST A+FGLG VG S ++
Sbjct: 179 GYGAAVNTAKVTPGSTCAVFGLGGVGFSAIV 209

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  157 bits (397), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/212 (41%), Positives = 122/212 (57%), Gaps = 4/212 (1%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
            TAGK+I+C+AA+     +P  +EEIEV PPK  EVRIKIL T +C +D    + T   +
Sbjct: 1   GTAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTM--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
           + FP I+                     D V+P+F   C EC  C++P  N+C +  +  
Sbjct: 59  SKFPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIR-SDIT 117
Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
            + +  DGT RF   KG+ +H+ LN S+FTEYTVVD + V KI    P +  CL+ CG S
Sbjct: 118 GRGVLADGTTRFT-CKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFS 176
Query: 195 TGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           TG GAA K  +V+ GST  +FGLG VGLSV++
Sbjct: 177 TGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIM 208

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  156 bits (395), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 88/212 (41%), Positives = 122/212 (57%), Gaps = 4/212 (1%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
            TAGK+I+C+AA+     +P  +EEIEV PPK  EVRIKIL T +C +D    + T   +
Sbjct: 1   GTAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTM--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
           + FP I+                     D V+P+F   C EC  C++P  N+C +  +  
Sbjct: 59  SKFPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIR-SDIT 117
Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
            + +  DGT RF   KG+ +H+ +N S+FTEYTVVD + V KI    P +  CL+ CG S
Sbjct: 118 GRGVLADGTTRFT-CKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFS 176
Query: 195 TGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           TG GAA K  +V+ GST  +FGLG VGLSV++
Sbjct: 177 TGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIM 208

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/217 (40%), Positives = 125/217 (57%), Gaps = 9/217 (4%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
            T GK+I+C+AAI+   G PL +EEIEV PPKA EVRI+++ T +CH+D+    +T P  
Sbjct: 1   GTQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDI---NATDPKK 57
Query: 75  -AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNK 133
            A+FP +L                     D V+P F   C  C+ C SP +N+C K  N 
Sbjct: 58  KALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNF 117
Query: 134 D----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLL 189
                +Q +  D T+RF   KG  I++ + VSSF++YTVV   ++ ++  +  L+  CL+
Sbjct: 118 KYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLI 176
Query: 190 SCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
            CG S+G GAA   A+V  GST A+FGLG VGLS +I
Sbjct: 177 GCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAII 213

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 122/214 (57%), Gaps = 7/214 (3%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSD--VTFWRSTQP 72
           STAGK+I+C+AA+     KP  +E++EV PPKA EVRIK++   +C +D  V       P
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTP 60
Query: 73  PMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
                P IL                     D V+P+F   CG+CR CK+P+SN C K   
Sbjct: 61  ----LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDL 116
Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            + +   +DGT RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ CG
Sbjct: 117 GNPRGTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCG 175
Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
            STG G+A  VA+V  GST A+FGLG VGLS ++
Sbjct: 176 FSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVM 209

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 122/214 (57%), Gaps = 7/214 (3%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSD--VTFWRSTQP 72
           STAGK+I+C+AA+     KP  +E++EV PPKA EVRIK++   +C +D  V       P
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTP 60
Query: 73  PMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
                P IL                     D V+P+F   CG+CR CK+P+SN C K   
Sbjct: 61  ----LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDL 116
Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            + +   +DGT RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ CG
Sbjct: 117 GNPRGTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCG 175
Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
            STG G+A  VA+V  GST A+FGLG VGLS ++
Sbjct: 176 FSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVM 209

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 122/214 (57%), Gaps = 7/214 (3%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSD--VTFWRSTQP 72
           STAGK+I+C+AA+     KP  +E++EV PPKA EVRIK++   +C +D  V       P
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTDDHVVSGNLVTP 60
Query: 73  PMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
                P IL                     D V+P+F   CG+CR CK+P+SN C K   
Sbjct: 61  ----LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDL 116
Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            + +   +DGT RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ CG
Sbjct: 117 GNPRGTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCG 175
Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
            STG G+A  VA+V  GST A+FGLG VGLS ++
Sbjct: 176 FSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVM 209

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 89/212 (41%), Positives = 122/212 (57%), Gaps = 3/212 (1%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++   +C +D      T   +
Sbjct: 1   STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTM--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P IL                     D V+P+    CG+CR CK+P+SN C K    +
Sbjct: 59  TPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSN 118
Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
            Q   +DGT+RF   + + IH+ L +S+F++YTVVD   V KI    PL+  CL+ CG S
Sbjct: 119 PQGTLQDGTSRFT-CRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFS 177
Query: 195 TGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           TG G+A  VA+V  GST A+FGLG VGLS ++
Sbjct: 178 TGYGSAVNVAKVTPGSTCAVFGLGGVGLSAIM 209

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/217 (40%), Positives = 124/217 (57%), Gaps = 9/217 (4%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
            T GK+I+C+AAI+   G PL +EEIEV PPKA EVRI+++ T +C +D+    +T P  
Sbjct: 1   GTQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDI---NATDPKK 57
Query: 75  -AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNK 133
            A+FP +L                     D V+P F   C  C+ C SP +N+C K  N 
Sbjct: 58  KALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNF 117
Query: 134 D----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLL 189
                +Q +  D T+RF   KG  I++ + VSSF++YTVV   ++ ++  +  L+  CL+
Sbjct: 118 KYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLI 176
Query: 190 SCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
            CG S+G GAA   A+V  GST A+FGLG VGLS +I
Sbjct: 177 GCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAII 213

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 4/203 (1%)
Query: 25  AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXXX 84
           AA++   G    ++ +++  P+  EV +K++ T +CH+D+   R  + P+ + P +L   
Sbjct: 9   AAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIV-RDQKYPVPL-PAVLGHE 66
Query: 85  XXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTN 144
                             D V+  + G CG+C  C +     CS+F  ++      +G +
Sbjct: 67  GSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNH 125
Query: 145 RF-RDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKV 203
                 +G V  +    SSF  Y +    + VK+T D+P+++   L CG+ TG GA    
Sbjct: 126 ALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINA 185
Query: 204 AEVEEGSTVAIFGLGAVGLSVLI 226
            +V   S+   +G GAVGLS L+
Sbjct: 186 LKVTPASSFVTWGAGAVGLSALL 208

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 26/200 (13%)
Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXX 83
           +AA+ R  GKPL ++E+ +  P  G++++ I  + +CH+D+       P     P I   
Sbjct: 27  KAAVVRAFGKPLTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKPNPPFIPGH 86
Query: 84  XXXXXXXXXXXXXXXXXXXDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
                              D V +P     CG CR C      +C + +N          
Sbjct: 87  EGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCEEQLN---------- 136
Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL-DIACLLSCGVSTGLGAAW 201
                   G  ++       F EY V D   V  +  +I   +IA +L  GV+   G   
Sbjct: 137 -------TGYSVN-----GGFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVTVYKG--L 182
Query: 202 KVAEVEEGSTVAIFGLGAVG 221
           KV + + G  V I G+G +G
Sbjct: 183 KVTDTKPGDWVVISGIGGLG 202

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 26/182 (14%)
Query: 20  IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV-FP 78
           +++ +AA+ +   +PL +E++ +  P+  EV I+I    +C +D+  W+  +       P
Sbjct: 1   MVKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLP 60
Query: 79  RILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
            IL                     ++V+    GD   CR C+  K NIC       NQ +
Sbjct: 61  IILGHENAGTIVEVGELAKVKKGDNVVVYATWGDL-TCRYCREGKFNICK------NQII 113
Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH-VVKITPDIPLDIACLLSCGVSTGL 197
           P   TN                  F+EY +V  +  +VK+    P++ A L   G +T +
Sbjct: 114 PGQTTN----------------GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAG-TTSM 156
Query: 198 GA 199
           GA
Sbjct: 157 GA 158

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 28/201 (13%)
Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXX 83
           +AA+ R  G PL ++E+ V  P  G+V++KI  + +CH+D+       P     P I   
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGH 63
Query: 84  XXXXXXXXXXXXXXXXXXXDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
                              D V +P     CG C  C      +C K   + N     +G
Sbjct: 64  EGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEK---QQNTGYSVNG 120
Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP--LDIACLLSCGVSTGLGAA 200
                               + EY V D  + V + PD    ++IA +L  GV+   G  
Sbjct: 121 -------------------GYGEYVVADPNY-VGLLPDKVGFVEIAPILCAGVTVYKGL- 159
Query: 201 WKVAEVEEGSTVAIFGLGAVG 221
            KV +   G  V I G+G +G
Sbjct: 160 -KVTDTRPGQWVVISGIGGLG 179

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 76/200 (38%), Gaps = 26/200 (13%)
Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXX 83
           +AA+     +PL ++E+E      GEV ++I    +CH+D+       P     P I   
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 84  XXXXXXXXXXXXXXXXXXXDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
                              D V +P     CG C  C S +  +C    ++ N     DG
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCE---HQKNAGYSVDG 118
Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVSTGLGAAW 201
                               + EY      +VVKI  ++  + A  + C GV+T    A 
Sbjct: 119 -------------------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT--YKAL 157
Query: 202 KVAEVEEGSTVAIFGLGAVG 221
           KV   + G  VAI+G+G +G
Sbjct: 158 KVTGAKPGEWVAIYGIGGLG 177

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLV-LP 107
           +V I IL   +CHSD+    S +    ++P I                      D+V + 
Sbjct: 31  DVLIDILYAGICHSDIHSAYS-EWKEGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVG 89
Query: 108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT 167
            F   C  C+ CK  +   C+K V         D  + F D       N  ++  ++   
Sbjct: 90  CFVNSCKACKPCKEHQEQFCTKVV------FTYDCLDSFHD-------NEPHMGGYSNNI 136
Query: 168 VVDVTHVVKITPDIPLD-IACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVG 221
           VVD  +V+ +  + PL+ +A LL  G++T   +  K ++V +G+ V + G G +G
Sbjct: 137 VVDENYVISVDKNAPLEKVAPLLCAGITT--YSPLKFSKVTKGTKVGVAGFGGLG 189

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 75/200 (37%), Gaps = 26/200 (13%)
Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXX 83
           +AA+     +PL ++E+E      GEV ++I    +CH+D+       P     P I   
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 84  XXXXXXXXXXXXXXXXXXXDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
                              D V +P     CG C  C S +  +C    ++ N     DG
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCE---HQKNAGYSVDG 118
Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVSTGLGAAW 201
                               + EY      +VVKI  ++  + A  + C GV+T    A 
Sbjct: 119 -------------------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT--YKAL 157
Query: 202 KVAEVEEGSTVAIFGLGAVG 221
           KV   + G  VAI+G+G  G
Sbjct: 158 KVTGAKPGEWVAIYGIGGFG 177

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 37/193 (19%)
Query: 39  EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXXXXXXXXXXXXXXXXX 98
           E E+  P AGEVR+K+    +C SD   +R    P A +PR++                 
Sbjct: 36  EREIPTPSAGEVRVKVKLAGICGSDSHIYRGHN-PFAKYPRVIGHEFFGVIDAVGEGVES 94
Query: 99  XXXXDLVL--PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHN 156
               + V   PV    CG C  C   K N+C+                         +  
Sbjct: 95  ARVGERVAVDPVVS--CGHCYPCSIGKPNVCTTL----------------------AVLG 130
Query: 157 VLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS----CGVSTGLGAAWKVAEVEEGSTV 212
           V     F+EY VV   +  KI   +    A ++         TG G      +  E  TV
Sbjct: 131 VHADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHG------QPTENDTV 184
Query: 213 AIFGLGAVGLSVL 225
            ++G G +GL+++
Sbjct: 185 LVYGAGPIGLTIV 197

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 26/200 (13%)
Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXX 83
           +AA+    G PL +EE++V  P  G+V +KI  + +CH+D+       P     P I   
Sbjct: 8   KAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGH 67
Query: 84  XXXXXXXXXXXXXXXXXXXDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
                              D V +P     CG C  C +    +C    ++ N     +G
Sbjct: 68  EGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCE---SQQNTGYSVNG 124
Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL-DIACLLSCGVSTGLGAAW 201
                               + EY + D  +V  +  ++   +IA +L  GV+   G   
Sbjct: 125 -------------------GYAEYVLADPNYVGILPKNVEFAEIAPILCAGVTVYKG--L 163
Query: 202 KVAEVEEGSTVAIFGLGAVG 221
           K      G  VAI G+G +G
Sbjct: 164 KQTNARPGQWVAISGIGGLG 183

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 20/208 (9%)
Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP----PMAV 76
           ++  A +     +PLV +E E+     G + ++IL   +C SDV  +R   P    P+ +
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75
Query: 77  FPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCK-SPKSNICSKFVNKDN 135
                                     DL++      CGEC  CK S +  +C    N+  
Sbjct: 76  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCP---NRKV 132
Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD-VTHVVKITPDIPLDIACLLSCGVS 194
             + R G + +  L+G           ++ + V+D  T V+K++    LD+  +  C  +
Sbjct: 133 YGINR-GCSEYPHLRG----------CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGA 181
Query: 195 TGLGAAWKVAEVEEGSTVAIFGLGAVGL 222
           T   A  +  E   G TV I G G +GL
Sbjct: 182 TAYHAFDEYPESFAGKTVVIQGAGPLGL 209

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-114
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-113
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-112
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-111
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-110
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	4e-90
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	9e-77
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	4e-48
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	8e-39
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	9e-39
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-38
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	2e-38
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	5e-38
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	3e-36
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	4e-35
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	5e-34
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	1e-33
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	5e-33
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	4e-32
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	4e-31
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	9e-31
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	1e-30
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-30
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	1e-29
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	1e-26
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	6e-24
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	2e-22
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	2e-21
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	2e-21
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	3e-21
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	5e-21
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	1e-20
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	2e-20
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	1e-19
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	2e-18
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	2e-18
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	2e-18
3gms_A	340	Putative NADPH:quinone reductase; structural genom	2e-15
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	8e-14
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	9e-14
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	1e-12
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	2e-12
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	7e-12
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	7e-12
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	1e-11
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	3e-11
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	3e-11
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	5e-11
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	3e-10
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	3e-10
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	3e-10
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	9e-10
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	2e-09
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	4e-09
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	1e-08
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	2e-08
4eye_A	342	Probable oxidoreductase; structural genomics, niai	2e-08
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	4e-08
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	3e-06
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  331 bits (852), Expect = e-114
 Identities = 95/215 (44%), Positives = 134/215 (62%), Gaps = 7/215 (3%)

Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           T GK+I+C+AAI+   G PL +EEIEV PPKA EVRI+++ T +C +D+      +    
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA-- 59

Query: 76  VFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF----V 131
           +FP +LGHE  G+VESVG GV   + GD V+P F   C  C+ C SP +N+C K      
Sbjct: 60  LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKY 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
              +Q +  D T+RF   KG  I++ + VSSF++YTVV   ++ ++  +  L+  CL+ C
Sbjct: 120 PTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGC 178

Query: 192 GVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           G S+G GAA   A+V  GST A+FGLG VGLS +I
Sbjct: 179 GFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAII 213

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  328 bits (843), Expect = e-113
 Identities = 104/210 (49%), Positives = 141/210 (67%), Gaps = 2/210 (0%)

Query: 17  AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           A ++I+C+AA++   GKPL +EEIEV PPKA EVRIKI+ T++CH+D     S   P   
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTL-SGADPEGC 59

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           FP ILGH   G+VESVG GV +++ GD V+P++   CGEC+ C +PK+N+C K      +
Sbjct: 60  FPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 119

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            +  DGT+RF   KG+ I + +  S+F+EYTVV    V KI P  PLD  CLL CG+STG
Sbjct: 120 GLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 178

Query: 197 LGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
            GAA   A++E GS  A+FGLG VGL+V++
Sbjct: 179 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIM 208

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  326 bits (838), Expect = e-112
 Identities = 107/212 (50%), Positives = 135/212 (63%), Gaps = 4/212 (1%)

Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
            TAGK I C+AA++  P KPL +E I V PPKA EVRIKIL + +C SD +  +   P  
Sbjct: 2   CTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS- 60

Query: 75  AVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
             FP ILGHEAVGVVES+G GV  V+ GD V+P+F   CG CR CKS  SN C K     
Sbjct: 61  -KFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA 119

Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
              +  D T+RF   +G+ I+N++  S+FTEYTVV    V KI P  PL+ +CL+ CG +
Sbjct: 120 KTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFA 177

Query: 195 TGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           TG GAA   A+V  GST A+FGLG VG S ++
Sbjct: 178 TGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIV 209

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  323 bits (831), Expect = e-111
 Identities = 104/212 (49%), Positives = 138/212 (65%), Gaps = 2/212 (0%)

Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           +T GK+I+C+AA++    KPLV+EEIEVD P A E+RIKI+ T +CH+D+      +   
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK- 59

Query: 75  AVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
             FP +LGHE  G+VESVG GV E + G+ V+P+F   CGECR C+SPK+N C K    +
Sbjct: 60  DGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANE 119

Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
           +  +      RF   KG  +   L  S+F++YTVV+   V KI P  PLD  CLL CGVS
Sbjct: 120 SPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVS 178

Query: 195 TGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           TG GAA   A+VE GST A+FGLGAVGL+ ++
Sbjct: 179 TGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVM 210

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  321 bits (824), Expect = e-110
 Identities = 106/212 (50%), Positives = 138/212 (65%), Gaps = 3/212 (1%)

Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T    
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT- 59

Query: 75  AVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I GHEA G+VES+G GV  VR GD V+P+F   CG+CR CK P+ N C K     
Sbjct: 60  -PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSM 118

Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
            +   +DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ CG S
Sbjct: 119 PRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFS 177

Query: 195 TGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           TG G+A KVA+V +GST A+FGLG VGLSV++
Sbjct: 178 TGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  270 bits (692), Expect = 4e-90
 Identities = 62/209 (29%), Positives = 108/209 (51%), Gaps = 4/209 (1%)

Query: 19  KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFP 78
           ++    AA++   G    ++ +++  P+  EV +K++ T +CH+D+       P     P
Sbjct: 3   ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP--LP 60

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
            +LGHE  G++E++G  V E++ GD V+  + G CG+C  C +     CS+F  ++    
Sbjct: 61  AVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGA 119

Query: 139 PRDGTNRFRDL-KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGL 197
             +G +      +G V  +    SSF  Y +    + VK+T D+P+++   L CG+ TG 
Sbjct: 120 DSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGA 179

Query: 198 GAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           GA     +V   S+   +G GAVGLS L+
Sbjct: 180 GACINALKVTPASSFVTWGAGAVGLSALL 208

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  236 bits (604), Expect = 9e-77
 Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 20/212 (9%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           ++  A +     +PLV +E E+     G + ++IL   +C SDV  +R   P +   P I
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRV-PLPII 74

Query: 81  LGHEAVGVVESVGGGV-----EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
           LGHE  G V  V G       E ++ GDL++      CGEC  CK  K        N+  
Sbjct: 75  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCP--NRKV 132

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-THVVKITPDIPLDIACLLSCGVS 194
             +   G + +  L+G           ++ + V+D  T V+K++    LD+  +  C  +
Sbjct: 133 YGIN-RGCSEYPHLRG----------CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGA 181

Query: 195 TGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
           T   A  +  E   G TV I G G +GL  ++
Sbjct: 182 TAYHAFDEYPESFAGKTVVIQGAGPLGLFGVV 213

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  161 bits (409), Expect = 4e-48
 Identities = 50/206 (24%), Positives = 77/206 (37%), Gaps = 23/206 (11%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV-FPRILG 82
           +A      G   V+ +I    P  GE+ +K+    LCHSD+          A   P  LG
Sbjct: 2   KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61

Query: 83  HEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS--MPR 140
           HE VG V  +G GV     GD V       CG C  C   + N C++  +       +  
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGS 121

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI-PLDIACLLSCGVSTGLGA 199
            G+                     EY +VD    +    D+ P+  A L   G++     
Sbjct: 122 PGS-------------------MAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAI 162

Query: 200 AWKVAEVEEGSTVAIFGLGAVGLSVL 225
           +  +  +  GST  + G+G +G   +
Sbjct: 163 SRVLPLLGPGSTAVVIGVGGLGHVGI 188

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  136 bits (346), Expect = 8e-39
 Identities = 58/200 (29%), Positives = 85/200 (42%), Gaps = 26/200 (13%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+ R  G PL ++E+ V  P  G+V++KI  + +CH+D+       P     P I GH
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGH 63

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E VG V +VG GV  V+EGD V +P     CG C  C      +C     + N     +G
Sbjct: 64  EGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCE---KQQNTGYSVNG 120

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVSTGLGAAW 201
                               + EY V D  +V  +   +       + C GV+       
Sbjct: 121 G-------------------YGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTV--YKGL 159

Query: 202 KVAEVEEGSTVAIFGLGAVG 221
           KV +   G  V I G+G +G
Sbjct: 160 KVTDTRPGQWVVISGIGGLG 179

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  136 bits (346), Expect = 9e-39
 Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 30/202 (14%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+     +PL ++E+E      GEV ++I    +CH+D+       P     P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E VG+VE VG GV  ++ GD V +P     CG C  C S +  +C    ++ N     DG
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCE---HQKNAGYSVDG 118

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVST--GLGA 199
                               + EY      +VVKI  ++  + A  + C GV+T   L  
Sbjct: 119 G-------------------YAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKAL-- 157

Query: 200 AWKVAEVEEGSTVAIFGLGAVG 221
             KV   + G  VAI+G+G +G
Sbjct: 158 --KVTGAKPGEWVAIYGIGGLG 177

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  137 bits (346), Expect = 1e-38
 Identities = 53/214 (24%), Positives = 82/214 (38%), Gaps = 39/214 (18%)

Query: 24  RAAISRIPGKPLVMEEIEV-DPPKAGEVRIKILCTSLCHSDVTF----WRSTQPPMAVFP 78
           +AA      KPL +E+++        +V ++I    +CH+D+      W     P    P
Sbjct: 17  KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPK--LP 74

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
             LGHE VG +E V  GVE + +GD V+       G C  C++ +   C      +N   
Sbjct: 75  YTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHC------ENLEF 128

Query: 139 P---RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI---ACLLSCG 192
           P    DG                    F E+       V+K+  DI  +       L+  
Sbjct: 129 PGLNIDGG-------------------FAEFMRTSHRSVIKLPKDISREKLVEMAPLADA 169

Query: 193 VSTGLGAAWK-VAEVEEGSTVAIFGLGAVGLSVL 225
             T   A  K    +  G+ VAI G+G +G   +
Sbjct: 170 GITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAV 203

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  135 bits (343), Expect = 2e-38
 Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 33/207 (15%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV-FPRILG 82
           +AA+ +   +PL +E++ +  P+  EV I+I    +C +D+  W+  +       P ILG
Sbjct: 5   KAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILG 64

Query: 83  HEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP--- 139
           HE  G +  V G + +V++GD V+         CR C+  K NIC       NQ +P   
Sbjct: 65  HENAGTIVEV-GELAKVKKGDNVVVYATWGDLTCRYCREGKFNIC------KNQIIPGQT 117

Query: 140 RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGA 199
            +G                    F+EY +V  +  +     +    A  L+   +T +GA
Sbjct: 118 TNG-------------------GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGA 158

Query: 200 ---AWKVAEVEEGSTVAIFGLGAVGLS 223
              A           V + G+G + + 
Sbjct: 159 IRQALPFISKFAEPVVIVNGIGGLAVY 185

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  135 bits (341), Expect = 5e-38
 Identities = 53/211 (25%), Positives = 79/211 (37%), Gaps = 37/211 (17%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR-------STQPPMAV 76
           RA      GKPL ++EI V  PK  +V IK+    +CHSDV   +         +     
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
            P  LGHE  G +E VG  V    +GDLV        G C  C+  + ++C      D+ 
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLC------DSP 115

Query: 137 SMP---RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV 193
                  DG                   ++ EY +V     +     +    A  L+C  
Sbjct: 116 RWLGINFDG-------------------AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSG 156

Query: 194 STGLGAAWKVAEVEEGSTVAIFG-LGAVGLS 223
            T   A  + A ++   T+ + G  G +G  
Sbjct: 157 ITTYRAV-RKASLDPTKTLLVVGAGGGLGTM 186

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  130 bits (329), Expect = 3e-36
 Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 46/211 (21%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR--STQPPMAVFPRIL 81
           RA     P + L + +  V  P  GE+ +++   S+C +D+  W+  +        P + 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICS--KFVNKD 134
           GHE  GVVE+VG GV   + GD V     +      C  C  C++   ++C   + +   
Sbjct: 62  GHEFSGVVEAVGPGVRRPQVGDHVSLESHIV-----CHACPACRTGNYHVCLNTQIL--- 113

Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSC 191
              + RDG                    F EY VV   +      D+P ++A +      
Sbjct: 114 --GVDRDGG-------------------FAEYVVVPAENAWVNPKDLPFEVAAILEPFGN 152

Query: 192 GVSTGLGAAWKVAEVEEGSTVAIFGLGAVGL 222
            V               G +V I G G +GL
Sbjct: 153 AV-----HTVYAGSGVSGKSVLITGAGPIGL 178

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  127 bits (321), Expect = 4e-35
 Identities = 48/200 (24%), Positives = 71/200 (35%), Gaps = 30/200 (15%)

Query: 23  CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILG 82
            +  I       L  ++I V  PKA E+ I +  + +CH+D+  W    P     P + G
Sbjct: 6   QKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGG 65

Query: 83  HEAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           HE  GVV  +G  V+  + GD   +    G C  C  C+    + C    + D      D
Sbjct: 66  HEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNC---PHADLSGYTHD 122

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVST--GLG 198
           G+                   F +Y   D      I     L     + C G++    L 
Sbjct: 123 GS-------------------FQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKAL- 162

Query: 199 AAWKVAEVEEGSTVAIFGLG 218
              K A +  G  VAI G  
Sbjct: 163 ---KSANLMAGHWVAISGAA 179

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  125 bits (315), Expect = 5e-34
 Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 37/207 (17%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +A      G  + +  + +  P   ++ +K+    +C +D        P  +  P  LGH
Sbjct: 25  KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP--STPPVTLGH 81

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICS--KFVNKDNQSMPRD 141
           E  G+V   G  V ++  G  +       CG C  C++ + N+C   + +      + RD
Sbjct: 82  EFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAI-----GIHRD 136

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGVSTGLG 198
           G                    F EY +V      +I   +          L+C +     
Sbjct: 137 G-------------------GFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL----- 172

Query: 199 AAWKVAEVEEGSTVAIFGLGAVGLSVL 225
               ++ ++ GSTVAI G G +GL  +
Sbjct: 173 HGVDLSGIKAGSTVAILGGGVIGLLTV 199

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  123 bits (312), Expect = 1e-33
 Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 48/213 (22%)

Query: 24  RAAISRIPGKPLVMEEIEV-DPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILG 82
           ++ ++   G  + + E  + +     EVR+KI  + LC SD+            +P  LG
Sbjct: 2   KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKN--GAHYYPITLG 58

Query: 83  HEAVGVVESVGGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICS--KFVNKDN 135
           HE  G +++VG GV+++  GD V     LP     C  C +C     + C+   F+    
Sbjct: 59  HEFSGYIDAVGSGVDDLHPGDAVACVPLLP-----CFTCPECLKGFYSQCAKYDFI---- 109

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCG 192
               RDG                    F EY VV   +V  +  D+P++       ++ G
Sbjct: 110 -GSRRDGG-------------------FAEYIVVKRKNVFALPTDMPIEDGAFIEPITVG 149

Query: 193 VSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVL 225
           +      A+ +A+  E   V I G G +GL  +
Sbjct: 150 L-----HAFHLAQGCENKNVIIIGAGTIGLLAI 177

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  121 bits (307), Expect = 5e-33
 Identities = 59/209 (28%), Positives = 85/209 (40%), Gaps = 37/209 (17%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRIL 81
            A +   PG    + E++V  P  GEV IK+L TS+C +D+  +   +        P+I+
Sbjct: 6   VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIM 65

Query: 82  GHEAVGVVESVGGGVEEVREGDLVL--PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP 139
           GHE  G V  +G GVE +  GD V         CG+C  C+  + ++C    N     + 
Sbjct: 66  GHEVAGEVVEIGPGVEGIEVGDYVSVETHI--VCGKCYACRRGQYHVCQ---NTKIFGVD 120

Query: 140 RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGVSTG 196
            DG                    F EY VV   ++ K    IP + A L   L   V T 
Sbjct: 121 TDGV-------------------FAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTV 161

Query: 197 LGAAWKVAEVEEGSTVAIFGLGAVGLSVL 225
           L           G +V I G G +GL  +
Sbjct: 162 LAG------PISGKSVLITGAGPLGLLGI 184

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  119 bits (301), Expect = 4e-32
 Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 31/209 (14%)

Query: 26  AISRIPGKP-LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILG 82
           AI+   G+   V+ E     P++GE  ++ L   +C +D           P      +LG
Sbjct: 3   AIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLG 62

Query: 83  HEAVGVVESVGGGVEEVREGDLVL--PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           HEAVGVV  V     E+ EGD+V+         G     +  + ++    +  +   +  
Sbjct: 63  HEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGA 120

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGV-STG 196
            G                     +E+      ++V+I P    ++  L   +S    +  
Sbjct: 121 HGY-------------------MSEFFTSPEKYLVRI-PRSQAELGFLIEPISITEKALE 160

Query: 197 LGAAWKVAEVEEGSTVAIFGLGAVGLSVL 225
              A + A   + S+  + G G++GL  L
Sbjct: 161 HAYASRSAFDWDPSSAFVLGNGSLGLLTL 189

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  116 bits (294), Expect = 4e-31
 Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 45/204 (22%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR--STQPPMAVFPRILGHEAVGVVESV 92
           L +E+  +  PK  EV +++    +C SDV ++        +   P ++GHEA G V  V
Sbjct: 16  LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKV 75

Query: 93  GGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICS--KFVNKDNQSMPRDGTNR 145
           G  V+ +++GD V     +P     C  C+ CK  K N+C    F      + P DG   
Sbjct: 76  GKNVKHLKKGDRVAVEPGVP-----CRRCQFCKEGKYNLCPDLTFCA----TPPDDGN-- 124

Query: 146 FRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGVSTGLGAAWK 202
                               Y V       K+  ++ L+   L   LS GV      A +
Sbjct: 125 -----------------LARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV-----HACR 162

Query: 203 VAEVEEGSTVAIFGLGAVGLSVLI 226
            A V+ G+TV + G G +GL  ++
Sbjct: 163 RAGVQLGTTVLVIGAGPIGLVSVL 186

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  116 bits (292), Expect = 9e-31
 Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 47/210 (22%)

Query: 29  RIPGKPLVMEEIEVDP-PKAGEVRIKILCTSLCHSDVTFWR--STQPPMAVFPRILGHEA 85
            I      +E ++     K GEV + +  T +C SDV FW+     P +     +LGHE+
Sbjct: 21  WISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHES 80

Query: 86  VGVVESVGGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICS--KFVNKDNQSM 138
            G V +V   V+ ++ GD V     +      C  C  C + + N C    F++    + 
Sbjct: 81  AGEVIAVHPSVKSIKVGDRVAIEPQVI-----CNACEPCLTGRYNGCERVDFLS----TP 131

Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGVST 195
           P  G                       Y         KI  ++  +   +   LS  +  
Sbjct: 132 PVPGL-------------------LRRYVNHPAVWCHKI-GNMSYENGAMLEPLSVAL-- 169

Query: 196 GLGAAWKVAEVEEGSTVAIFGLGAVGLSVL 225
              A  + A V  G  V I G G +GL  +
Sbjct: 170 ---AGLQRAGVRLGDPVLICGAGPIGLITM 196

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  115 bits (291), Expect = 1e-30
 Identities = 47/209 (22%), Positives = 74/209 (35%), Gaps = 55/209 (26%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS-------TQPPMAVFPRILGHEAVG 87
           L +E   +  P   EV +++    +C SDV +W          + PM     +LGHEA G
Sbjct: 19  LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPM-----VLGHEASG 73

Query: 88  VVESVGGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICS--KFVNKDNQSMPR 140
            VE VG  V+ ++ GD V      P           CK  + N+     F      + P 
Sbjct: 74  TVEKVGSSVKHLKPGDRVAIEPGAP-----RENDEFCKMGRYNLSPSIFFC----ATPPD 124

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGVSTGL 197
           DG                       +   +     K+  ++  +   L   LS G+    
Sbjct: 125 DGN-------------------LCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGI---- 161

Query: 198 GAAWKVAEVEEGSTVAIFGLGAVGLSVLI 226
             A +   V  G  V + G G +G+  L+
Sbjct: 162 -HACRRGGVTLGHKVLVCGAGPIGMVTLL 189

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  115 bits (290), Expect = 2e-30
 Identities = 46/216 (21%), Positives = 79/216 (36%), Gaps = 40/216 (18%)

Query: 24  RAAISRIPGKPLVMEEIEV-DPPKAGEVRIKILCTSLCHSDVTFWR----STQPPMAVFP 78
           +A I + P   + +++++       G+++I+ +   +C +D          +  P     
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
            +LGHEA+GVVE    G     +GDLV+PV +  CG CR+C   + + C      +    
Sbjct: 62  LVLGHEAIGVVEESYHG---FSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIH 118

Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGV-- 193
             DG                      E+   D  ++VKI P    DI  L   L+     
Sbjct: 119 KMDGF-------------------MREWWYDDPKYLVKI-PKSIEDIGILAQPLADIEKS 158

Query: 194 -------STGLGAAWKVAEVEEGSTVAIFGLGAVGL 222
                     +              V + G G +G+
Sbjct: 159 IEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGV 194

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  113 bits (285), Expect = 1e-29
 Identities = 55/247 (22%), Positives = 77/247 (31%), Gaps = 53/247 (21%)

Query: 2   PSSELVMDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEV-DPPKAGEVRIKILCTSLC 60
           P  E  +  K+     GK+    + + R P   + +EE+      K  E+ IK+    +C
Sbjct: 14  PRPEFKLGPKDIE---GKLTWLGSKVWRYPE--VRVEEVPEPRIEKPTEIIIKVKACGIC 68

Query: 61  HSDVTFW------RSTQPPMAVFPRILGHEAVGVVESVGGGVEE------VREGDLVLPV 108
            SDV             P +  FP  LGHE  GVV   G              G+ V   
Sbjct: 69  GSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAE 128

Query: 109 FQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV 168
               CG CR C     N C    N +      DG                    F EY  
Sbjct: 129 EMLWCGHCRPCAEGFPNHCE---NLNELGFNVDGA-------------------FAEYVK 166

Query: 169 VDVTHVVKI-------TPDIPLDIACL---LSCGVSTGLGAAWKVAEVEEGSTVAIFGLG 218
           VD  +   +         D       L    S   +       +   +  G  V I G G
Sbjct: 167 VDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYN---AVIVRGGGIRPGDNVVILGGG 223

Query: 219 AVGLSVL 225
            +GL+ +
Sbjct: 224 PIGLAAV 230

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  105 bits (264), Expect = 1e-26
 Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 33/205 (16%)

Query: 33  KPLVMEEI------EVDPPKAGE--VRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHE 84
           K   M  I      E + P  G     ++ L  + C SD+               ILGHE
Sbjct: 2   KGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERH-NMILGHE 60

Query: 85  AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTN 144
           AVG V  VG  V++ + GD V+           + +          +     S  +DG  
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGV- 119

Query: 145 RFRDLKGEVIHNVLNVSSFTEYTVV---DVTHVVKITPDIPLDIACLLSCGVSTGLGAAW 201
                             F E+  V   D+     +  +IPL+ A ++   ++TG   A 
Sbjct: 120 ------------------FGEFFHVNDADMNL-AHLPKEIPLEAAVMIPDMMTTGFHGA- 159

Query: 202 KVAEVEEGSTVAIFGLGAVGLSVLI 226
           ++A ++ G TV + G+G VGL  + 
Sbjct: 160 ELANIKLGDTVCVIGIGPVGLMSVA 184

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 97.7 bits (244), Expect = 6e-24
 Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 33/206 (16%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           RA + R  G P  L + ++ V  P   EVR+++   +L H DV   +    P    P +L
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           G +  GVV++VG GVE    GD V+      CG C  C + + N+C ++         R 
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRY---QILGEHRH 118

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAW 201
           GT                   + EY V+   ++     ++  + A  +     T    AW
Sbjct: 119 GT-------------------YAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLT----AW 155

Query: 202 ----KVAEVEEGSTVAIFG-LGAVGL 222
                   V  G  V +      V +
Sbjct: 156 QMVVDKLGVRPGDDVLVMAAGSGVSV 181

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 93.9 bits (234), Expect = 2e-22
 Identities = 52/188 (27%), Positives = 68/188 (36%), Gaps = 25/188 (13%)

Query: 43  DPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102
                  V +K++ T++C SD    R           +LGHE  G V   G  VE ++ G
Sbjct: 29  GKKIEHGVILKVVSTNICGSDQHMVRGRTTAQV--GLVLGHEITGEVIEKGRDVENLQIG 86

Query: 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD--LKGEVIHNVLNV 160
           DLV   F   CG CR CK   + +C                N  R     G V       
Sbjct: 87  DLVSVPFNVACGRCRSCKEMHTGVC-------------LTVNPARAGGAYGYV-DMGDWT 132

Query: 161 SSFTEYTVV---DVTHVV---KITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAI 214
               EY +V   D   +    +      +     LS  + TG   A   A V  GSTV +
Sbjct: 133 GGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYV 191

Query: 215 FGLGAVGL 222
            G G VGL
Sbjct: 192 AGAGPVGL 199

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 91.1 bits (227), Expect = 2e-21
 Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 33/200 (16%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
               L             +VR K+L   +CHSD+   ++     +++P + GHE VG V 
Sbjct: 25  QSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGF-SMYPLVPGHEIVGEVT 83

Query: 91  SVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDL 149
            VG  V++V  GD V +    G C  C  C +   N C K +     S+  DGT  +   
Sbjct: 84  EVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYA-SIYHDGTITY--- 139

Query: 150 KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVST-------GLGAAW 201
            G           ++ + V +  ++++   ++PLD    L C G++        GL    
Sbjct: 140 -G----------GYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEP- 187

Query: 202 KVAEVEEGSTVAIFGLGAVG 221
                  G  + I GLG +G
Sbjct: 188 -------GKHIGIVGLGGLG 200

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 91.2 bits (227), Expect = 2e-21
 Identities = 54/196 (27%), Positives = 72/196 (36%), Gaps = 28/196 (14%)

Query: 41  EVDPPK--------AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESV 92
            V  PK           V +K++ T++C SD   +R           +LGHE  G V   
Sbjct: 18  TVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPK--GHVLGHEITGEVVEK 75

Query: 93  GGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGE 152
           G  VE +  GDLV   F   CG CR+CK  +S++C       N   P      F      
Sbjct: 76  GSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCEN-----NLVNPDADLGAFGFDLKG 130

Query: 153 VIHNVLNVSSFTEYTVV---DVTHVV---KITPDIPLDIACLLSCGVSTGLGAAWKVAEV 206
                       EY +V   D   +    K      +    L+S  + TG       A V
Sbjct: 131 W------SGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGV 183

Query: 207 EEGSTVAIFGLGAVGL 222
           + GS V I G G VG 
Sbjct: 184 KPGSHVYIAGAGPVGR 199

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 90.4 bits (225), Expect = 3e-21
 Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 30/221 (13%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           +++ +    AG  I+   A S    +PL   +I    P   +V+I+I    +CHSD+   
Sbjct: 10  LESTSLYKKAGLKIKAVGAYS--AKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQV 67

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNI 126
           RS      V+P + GHE VG V +VG  VE+   GDLV +      C  C +C+    N 
Sbjct: 68  RSEWAG-TVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENY 126

Query: 127 CSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD--IPLD 184
           C       N S   D                  +  +++  VV   +V++I       L 
Sbjct: 127 CDHMTGTYN-SPTPDEPGH-------------TLGGYSQQIVVHERYVLRI-RHPQEQLA 171

Query: 185 IACLLSC-GVSTGLGAAW---KVAEVEEGSTVAIFGLGAVG 221
               L C G++T     +   +  +   G  V + G+G +G
Sbjct: 172 AVAPLLCAGITT-----YSPLRHWQAGPGKKVGVVGIGGLG 207

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 89.6 bits (223), Expect = 5e-21
 Identities = 53/195 (27%), Positives = 81/195 (41%), Gaps = 23/195 (11%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
           P   L      +      +V I+I+C  +CH+D+   ++     + +P + GHE VG V 
Sbjct: 18  PSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM-SNYPMVPGHEVVGEVV 76

Query: 91  SVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDL 149
            VG  V +   GD+V +    G CG C  C+      C K +   N  +  +G       
Sbjct: 77  EVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYN-DVYINGQPTQ--- 132

Query: 150 KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVST--GLGAAWKVAEV 206
            G           F + TVV    VVKI   + ++ A  L C GV+    L + + +   
Sbjct: 133 -G----------GFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPL-SHFGLK-- 178

Query: 207 EEGSTVAIFGLGAVG 221
           + G    I GLG VG
Sbjct: 179 QPGLRGGILGLGGVG 193

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 88.8 bits (221), Expect = 1e-20
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 24/196 (12%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
             +     +         +V I IL   +CHSD+    S      ++P I GHE  G+++
Sbjct: 13  KDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKE-GIYPMIPGHEIAGIIK 71

Query: 91  SVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDL 149
            VG GV++ + GD+V +  F   C  C+ CK  +   C+K V   +        + F D 
Sbjct: 72  EVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYD------CLDSFHD- 124

Query: 150 KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVSTGLGAAW---KVAE 205
             E          ++   VVD  +V+ +  + PL+    L C G++T     +   K ++
Sbjct: 125 -NEPHM-----GGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITT-----YSPLKFSK 173

Query: 206 VEEGSTVAIFGLGAVG 221
           V +G+ V + G G +G
Sbjct: 174 VTKGTKVGVAGFGGLG 189

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 88.1 bits (219), Expect = 2e-20
 Identities = 38/192 (19%), Positives = 59/192 (30%), Gaps = 33/192 (17%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94
           L + E  V      ++ ++ L  SL + D     +       FP +   +  GVVE+VG 
Sbjct: 41  LKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGK 100

Query: 95  GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVI 154
            V   R GD V+  F     +     + ++                 G            
Sbjct: 101 SVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETL------GGAHPGV----------- 143

Query: 155 HNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAW----KVAEVEEGS 210
                    +EY V+     V     +    A  L C   T    AW    +   +  G 
Sbjct: 144 --------LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLT----AWFALVEKGHLRAGD 191

Query: 211 TVAIFGLGAVGL 222
            V + G G V L
Sbjct: 192 RVVVQGTGGVAL 203

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 86.4 bits (214), Expect = 1e-19
 Identities = 35/227 (15%), Positives = 69/227 (30%), Gaps = 42/227 (18%)

Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDV----------- 64
            A      +    +   K L + E+ +      EV + ++ +S+ ++ V           
Sbjct: 31  RAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTF 90

Query: 65  ------TFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRD 118
                                +LG +  GVV   G GV   + GD V+ V      E   
Sbjct: 91  HFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVI-VHPAHVDEQEP 149

Query: 119 CKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178
                  + ++   +        G                      EY VV  + ++   
Sbjct: 150 ATHGDGMLGTEQ--RAWGFETNFGG-------------------LAEYGVVRASQLLPKP 188

Query: 179 PDIPLDIACLLSCGVSTGLGA--AWKVAEVEEGSTVAIFGL-GAVGL 222
             +  + A +      T      + + A++++G  V I+G  G +G 
Sbjct: 189 AHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGS 235

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 52/205 (25%)

Query: 24  RAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           RA +    G P   + ++ +E+   +  +VR+K+L   +  SD+   +     +   P +
Sbjct: 28  RALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAV 87

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
            G+E V  V +VG  V  ++ GD V+P   G                             
Sbjct: 88  GGNEGVAQVVAVGSNVTGLKPGDWVIPANAG----------------------------- 118

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAA 200
            GT                   +    V     ++++  DIPL  A  L     T     
Sbjct: 119 LGT-------------------WRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRML 159

Query: 201 WKVAEVEEGSTVAIFGL-GAVGLSV 224
               +++ G +V        VG +V
Sbjct: 160 MDFEQLQPGDSVIQNASNSGVGQAV 184

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 82.6 bits (205), Expect = 2e-18
 Identities = 52/207 (25%), Positives = 75/207 (36%), Gaps = 35/207 (16%)

Query: 25  AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTF----WRSTQPPMAVFPRI 80
           A  S    K     + +  P    ++ IKI    +C SD+      W + + P+ V    
Sbjct: 11  AIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVV---- 66

Query: 81  LGHEAVGVVESVGGGVE-EVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
            GHE VG V  +G      ++ G  V +      C EC  CK+     C+KFV   +   
Sbjct: 67  -GHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYS-QP 124

Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVSTGL 197
             DG        G           +  Y  V    VV I  +IP  +A  L C G++   
Sbjct: 125 YEDGYVSQ----G----------GYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTV-- 168

Query: 198 GAAW---KVAEVEEGSTVAIFGLGAVG 221
              +          G  V I GLG +G
Sbjct: 169 ---YSPLVRNGCGPGKKVGIVGLGGIG 192

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 45/222 (20%)

Query: 24  RAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDV---------------- 64
            A +      P   + ++++ V     GE  + ++ +S+ ++ V                
Sbjct: 44  FAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLER 103

Query: 65  TFWRSTQPPMAVFP-RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPK 123
               S        P  ++G +  GVV   G GV   + GD V+        E  D     
Sbjct: 104 YGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDG---- 159

Query: 124 SNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL 183
                   + D    P      F    G             E  +V    ++     +  
Sbjct: 160 --------HNDTMLDPEQRIWGFETNFG----------GLAEIALVKSNQLMPKPDHLSW 201

Query: 184 DIACLLSCGVSTGLGA--AWKVAEVEEGSTVAIFGL-GAVGL 222
           + A       ST      +   A +++G  V I+G  G +G 
Sbjct: 202 EEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGS 243

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 40/208 (19%), Positives = 62/208 (29%), Gaps = 58/208 (27%)

Query: 19  KIIRCRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           K+I+         G P   L +E   ++P K  EV +++L   +  SD+           
Sbjct: 6   KLIQFHK-----FGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRI 60

Query: 76  VFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
             P I G+E VG+VE+VG  V     G  VLP+                           
Sbjct: 61  PLPNIPGYEGVGIVENVGAFVSRELIGKRVLPLRGE------------------------ 96

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
                 GT                   + EY       VV I   I    A  +     T
Sbjct: 97  ------GT-------------------WQEYVKTSADFVVPIPDSIDDFTAAQMYINPLT 131

Query: 196 GLGAAWKVAEVEEGSTVAIFG-LGAVGL 222
                 +   ++    + +     A+G 
Sbjct: 132 AWVTCTETLNLQRNDVLLVNACGSAIGH 159

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 68.9 bits (169), Expect = 8e-14
 Identities = 36/221 (16%), Positives = 62/221 (28%), Gaps = 53/221 (23%)

Query: 20  IIRCRAAISRIPGKP---LVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWR------ 68
           +I  +A +    G+P   L  +  E+D       EV +K L + +  SD+   +      
Sbjct: 1   MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 69  ---STQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSN 125
              +T           G+E +  V  VG  V  +  GD V+P                  
Sbjct: 61  PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGT----------- 109

Query: 126 ICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI 185
                               +R       H + N   F +      +        + ++ 
Sbjct: 110 --------------------WRT------HALGNDDDFIKLPNPAQSKANGKPNGLTINQ 143

Query: 186 ACLLSCGVSTGLGAAWKVAEVEEGSTVAIF--GLGAVGLSV 224
              +S    T         ++  G    I   G  AVG   
Sbjct: 144 GATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYA 184

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 69.0 bits (169), Expect = 9e-14
 Identities = 37/211 (17%), Positives = 59/211 (27%), Gaps = 58/211 (27%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
            A       +  V            +V +++   ++  SD       +   A     LG 
Sbjct: 13  TALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TS-MRGQFATPWAFLGT 68

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           +  G V +VG  V  ++ GD V        G                 N+     P  G 
Sbjct: 69  DYAGTVVAVGSDVTHIQVGDRV-------YG---------------AQNEMCPRTPDQGA 106

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST-------- 195
                              F++YTV       KI   +  + A  L  G+ST        
Sbjct: 107 -------------------FSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLL 147

Query: 196 GLGAAWKVAE----VEEGSTVAIFG-LGAVG 221
           GL      A+      +   V ++G   A  
Sbjct: 148 GLPLPSPSADQPPTHSKPVYVLVYGGSTATA 178

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 35/200 (17%), Positives = 56/200 (28%), Gaps = 62/200 (31%)

Query: 31  PGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
            G P V+   E     P   E++++     +   D    RS   P    P  LG EA G+
Sbjct: 10  HGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYI-RSGLYPPPSLPSGLGTEAAGI 68

Query: 89  VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD 148
           V  VG GV+ ++ GD                                             
Sbjct: 69  VSKVGSGVKHIKAGD--------------------------------------------- 83

Query: 149 LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA--CLLSCGVSTGLGA---AWKV 203
               V++    + +++    +       +   I  + A    L      GL       K 
Sbjct: 84  ---RVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLK-----GLTVYYLLRKT 135

Query: 204 AEVEEGSTVAIFGL-GAVGL 222
            E++           G VGL
Sbjct: 136 YEIKPDEQFLFHAAAGGVGL 155

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 39/200 (19%), Positives = 63/200 (31%), Gaps = 62/200 (31%)

Query: 31  PGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
            G P V+   + E + P    V ++     L   D  + RS   P    P  LG E  GV
Sbjct: 10  VGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYY-RSGLYPAPFLPSGLGAEGAGV 68

Query: 89  VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD 148
           VE+VG  V   + GD                                           R 
Sbjct: 69  VEAVGDEVTRFKVGD-------------------------------------------R- 84

Query: 149 LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA--CLLSCGVSTGLGA---AWKV 203
               V +    + +++E  V+   ++VK+   +  + A   +L      GL       + 
Sbjct: 85  ----VAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLK-----GLTVQYLLRQT 135

Query: 204 AEVEEGSTVAIFGL-GAVGL 222
            +V+ G  +      G VG 
Sbjct: 136 YQVKPGEIILFHAAAGGVGS 155

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 63.4 bits (155), Expect = 7e-12
 Identities = 37/201 (18%), Positives = 66/201 (32%), Gaps = 59/201 (29%)

Query: 31  PGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS---TQPPMAVFPRILGHEA 85
            G P     EE++V  P  G+VR++     +   D    R+       +   P ++G EA
Sbjct: 10  KGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYH-RAGIPHPLVVGEPPIVVGFEA 68

Query: 86  VGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNR 145
             VVE VG GV +   G+                                          
Sbjct: 69  AAVVEEVGPGVTDFTVGE------------------------------------------ 86

Query: 146 FRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGA---AWK 202
                  V   +  + ++++  +     ++K+  D+ LD   L    +  G+ A     +
Sbjct: 87  ------RVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLK-GMTAQYLLHQ 139

Query: 203 VAEVEEGSTVAIFGL-GAVGL 222
             +V+ G  V I    G +G 
Sbjct: 140 THKVKPGDYVLIHAAAGGMGH 160

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 63.4 bits (155), Expect = 7e-12
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS--TQPPMAVFPRIL 81
            AA+      P V+ ++    P  G+V ++I  +     D    R+          P IL
Sbjct: 9   IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDA-KIRAGEAPHAQQPLPAIL 67

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G +  G V +VG  V+  R GD V
Sbjct: 68  GMDLAGTVVAVGPEVDSFRVGDAV 91

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 24  RAAISRIPGKPLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMA-----V 76
           +A      G P V++ ++   P  +  ++ IK+   SL   D    R+    +A      
Sbjct: 8   KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKT-RNGSGFVAKKLKNN 66

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLV 105
            P  LG++  G V  +G  V  V  GD V
Sbjct: 67  LPSGLGYDFSGEVIELGSDVNNVNIGDKV 95

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 73/210 (34%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
               + +  +++    A ++ ++     +   D  F     P       + G +  GV+ 
Sbjct: 13  KTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKF-IKANPINWSNGHVPGVDGAGVIV 71

Query: 91  SVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLK 150
            VG  V+    G  V                             + S+ R G+       
Sbjct: 72  KVGAKVDSKMLGRRV-------AY--------------------HTSLKRHGS------- 97

Query: 151 GEVIHNVLNVSSFTEYTVVDVTHVVKITPD---------IPLDIACLLSCGVSTGLGAAW 201
                       F E+TV++   V+ + PD         +P              L  AW
Sbjct: 98  ------------FAEFTVLNTDRVMTL-PDNLSFERAAALPC-----------PLL-TAW 132

Query: 202 ---KVAEVEEGSTVAIFGLGAVGLSVLIRI 228
              +   + +   V I G GAV  ++L ++
Sbjct: 133 QAFEKIPLTKQREVLIVGFGAVN-NLLTQM 161

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 19  KIIRCRAAISRIPGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           K+I          G   V+  E+  V      E+ IK   T + + +  F R    P   
Sbjct: 10  KVILIDE-----IGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYF-RKGIYPCE- 62

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLV 105
            P +LG EA G V + G GV     GD V
Sbjct: 63  KPYVLGREASGTVVAKGKGVTNFEVGDQV 91

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 32/208 (15%), Positives = 57/208 (27%), Gaps = 54/208 (25%)

Query: 19  KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFP 78
           + +              +  +  V  P  G++ ++     +  SD+ +      P    P
Sbjct: 25  QKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPP 84

Query: 79  RILGHEAVGVVESVGGGV-EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS 137
             +G E +G V ++G         G  V  +  G                          
Sbjct: 85  FDIGFEGIGEVVALGLSASARYTVGQAVAYMAPG-------------------------- 118

Query: 138 MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGL 197
                                   SF EYTVV  +    + P +  +   LL  G  T  
Sbjct: 119 ------------------------SFAEYTVVPASIATPV-PSVKPEYLTLLVSGT-TAY 152

Query: 198 GAAWKVAEVEEGSTVAIFG-LGAVGLSV 224
            +  ++  + EG  V +    G  G   
Sbjct: 153 ISLKELGGLSEGKKVLVTAAAGGTGQFA 180

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 58.7 bits (143), Expect = 3e-10
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 19  KIIRCRAAISRIPGKPLVME---EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           + +R         G P V++   +I V  PK  +V IK+    +   +      T     
Sbjct: 31  RAVRVFE-----FGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKP 85

Query: 76  VFPRILGHEAVGVVESVGGGVEEVREGDLV 105
           + P   G +  GV+E+VG      ++GD V
Sbjct: 86  LLPYTPGSDVAGVIEAVGDNASAFKKGDRV 115

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           RA +    G    L +    +  P+ GE++I++    L   D+   +         P + 
Sbjct: 5   RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVP 64

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G E  G+VE++G  V+    GD V
Sbjct: 65  GFECSGIVEALGDSVKGYEIGDRV 88

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 28/197 (14%), Positives = 47/197 (23%), Gaps = 55/197 (27%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
               L    I V  P   +V IK+   S+  SDV F +       V  R  G E VG + 
Sbjct: 33  MEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIV 92

Query: 91  SVGGGVE-EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDL 149
           + G     +   G  V                                    G+      
Sbjct: 93  AGGDEPYAKSLVGKRVAFATGLSNW---------------------------GS------ 119

Query: 150 KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAW---KVAEV 206
                        + EY V +    + +   +  +    +     T    A     + + 
Sbjct: 120 -------------WAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLT----AIAMFDIVKQ 162

Query: 207 EEGSTVAIFG-LGAVGL 222
           E      +      +  
Sbjct: 163 EGEKAFVMTAGASQLCK 179

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 34  PLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVES 91
              + +IE+  P     ++ +++   S+   D    R + PP     +++G++A G+V +
Sbjct: 37  DASLLDIELPKPAPAGHDILVEVKAVSVNPVD-YKVRRSTPPDGTDWKVIGYDAAGIVSA 95

Query: 92  VGGGVEEVREGDLV 105
           VG  V   R GD V
Sbjct: 96  VGPDVTLFRPGDEV 109

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           R    +  G P  +V+ +  +     GEV ++     +   D+   + + PP      IL
Sbjct: 30  RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPIL 89

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G E  G +  VG GV     GD V
Sbjct: 90  GLELSGEIVGVGPGVSGYAVGDKV 113

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 32  GKPLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVV 89
               + +   +D P  K  E+ +KI   S+   D T  R         PR+LG +A+GVV
Sbjct: 15  SDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVD-TKQRLMDVSK--APRVLGFDAIGVV 71

Query: 90  ESVGGGVEEVREGDLV 105
           ESVG  V    +GD+V
Sbjct: 72  ESVGNEVTMFNQGDIV 87

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 32/117 (27%)

Query: 19  KIIRCRAAISRIPGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTF---------- 66
             ++ R+ I       L +  + I+   P   EV I+I  + L  SD+            
Sbjct: 4   SALQLRSRIK--SSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTA 61

Query: 67  ------------------WRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV 105
                                +          +G+E  GVV   G            
Sbjct: 62  KASGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKT 118

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
            A     PG P  L ++E+    P  GEV +K+  ++L  +D+   +    P      IL
Sbjct: 24  LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNIL 83

Query: 82  GHEAVGVVESVGGGVE-EVREGDLV 105
           G EA G V  +G G +   + GD  
Sbjct: 84  GLEASGHVAELGPGCQGHWKIGDTA 108

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A  ++    P  LV  ++E        V + +    +C  D    +         P + 
Sbjct: 23  KAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVP 82

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G E  GVV S   G   ++ GD V
Sbjct: 83  GIETAGVVRSAPEGS-GIKPGDRV 105

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 18/100 (18%)

Query: 24  RAAISRIPGKPLVMEEIEV----DPPKAGEVRIKILCTSLCHSDV--------------T 65
            A +    GK  V+   +           EV +K+   S+   DV               
Sbjct: 23  MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82

Query: 66  FWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV 105
                +     FP  LG +  GVV   G  V+  + GD V
Sbjct: 83  DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV 122

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 18/67 (26%), Positives = 29/67 (43%)

Query: 24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
          +A + +  G PL + ++     + GEV +++    L  +D              P I G 
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGM 61

Query: 84 EAVGVVE 90
          E VGVVE
Sbjct: 62 EVVGVVE 68

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 14/82 (17%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF-----PRILGHEAVGVV 89
           LV E     P   GEVRI +    +   D          +           LG E  GVV
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDA---------LIALGMYPGVASLGSEGAGVV 276

Query: 90  ESVGGGVEEVREGDLVLPVFQG 111
              G GV  +  GD V+ +   
Sbjct: 277 VETGPGVTGLAPGDRVMGMIPK 298

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 51/149 (34%)

Query: 126 ICSKFVNKDNQ-SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLD 184
           + S    +  Q SM        RD     ++N  +   F +Y V  +   +K+       
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRD----RLYN--DNQVFAKYNVSRLQPYLKLR------ 141

Query: 185 IACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLI-------RIHLKF----- 232
              LL               E+     V I G+   G + +        ++  K      
Sbjct: 142 -QALL---------------ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 233 -----TRHTPHILPTLILMSEVQEMYSQL 256
                  ++P       ++  +Q++  Q+
Sbjct: 186 WLNLKNCNSPE-----TVLEMLQKLLYQI 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 37/252 (14%), Positives = 74/252 (29%), Gaps = 80/252 (31%)

Query: 35  LVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESV 92
           LV+  ++ +     A  +  KIL T+         R  Q                V + +
Sbjct: 248 LVLLNVQ-NAKAWNAFNLSCKILLTT---------RFKQ----------------VTDFL 281

Query: 93  GGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD--GTNRFR-DL 149
                     D        D  E +        +  K+++   Q +PR+   TN  R  +
Sbjct: 282 SAATTTHISLDHHSMTLTPD--EVKS-------LLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 150 KGEVIHNVLNVSSFTEYTVVD-VTHVVK-------------------ITPD---IPLDIA 186
             E I + L      ++   D +T +++                   + P    IP  + 
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 187 CLLSCGVSTGLGAAW-KVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHI-LPTLI 244
            L+           W  V + +    V          S++ +   + T   P I L   +
Sbjct: 393 SLI-----------WFDVIKSDVMVVVNKL----HKYSLVEKQPKESTISIPSIYLELKV 437

Query: 245 LMSEVQEMYSQL 256
            +     ++  +
Sbjct: 438 KLENEYALHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.97
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.97
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.97
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.97
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.96
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.96
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.95
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.81
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.1
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.21
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.6
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.26
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	94.83
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	94.83
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.8
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.79
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.72
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.34
2b25_A	336	Hypothetical protein; structural genomics, methyl	94.28
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.17
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.09
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.77
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.56
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.43
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.82
3c85_A	183	Putative glutathione-regulated potassium-efflux S	92.65
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	90.81
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	90.78
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	89.91
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	89.88
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	89.52
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	89.51
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	89.36
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	88.92
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	88.73
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	87.92
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	87.8
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	87.68
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	87.41
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	87.09
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	86.95
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	86.93
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	86.88
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	86.8
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	86.78
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	86.77
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	86.74
4dqx_A	277	Probable oxidoreductase protein; structural genomi	86.71
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	86.69
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	86.44
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	86.33
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	86.22
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	86.1
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	85.92
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	85.82
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	85.79
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	85.77
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	85.74
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	85.57
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	85.48
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	85.45
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	85.39
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	85.32
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.25
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	85.16
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	85.14
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	85.02
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	84.97
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	84.93
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	84.88
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	84.72
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	84.68
3rih_A	293	Short chain dehydrogenase or reductase; structural	84.62
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	84.59
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	84.5
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	84.46
3cxt_A	291	Dehydrogenase with different specificities; rossma	84.31
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	84.06
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	83.84
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	83.78
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	83.61
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	83.55
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	83.4
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	83.37
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	83.25
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	83.21
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	82.84
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	82.59
1xhl_A	297	Short-chain dehydrogenase/reductase family member	82.32
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	82.0
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	81.67
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	81.59
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	81.52
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	81.39
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	81.37
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	81.34
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	81.33
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	81.26
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	81.21
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	80.77
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	80.62
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	80.45
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	80.4
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	80.2
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	80.19
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	80.08

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-44  Score=329.89  Aligned_cols=217  Identities=50%  Similarity=0.915  Sum_probs=191.4

Q ss_pred             ccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173           17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (256)
Q Consensus        17 ~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v   96 (256)
                      ..+|+||||+++++++++++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|
T Consensus         3 ~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~v   81 (378)
T 3uko_A            3 QGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGV   81 (378)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEECTTC
T ss_pred             cccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCC-CCCCccCCccceEEEEEeCCCC
Confidence            356899999999999988999999999999999999999999999999999998764 5789999999999999999999


Q ss_pred             cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccceeeeEEecCCcEE
Q 025173           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (256)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~  175 (256)
                      ++|++||+|++.+...|+.|.+|++|++++|++.......|.. .+|..+|+ .+|..++...+.|+|+||++++++.++
T Consensus        82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~  160 (378)
T 3uko_A           82 TEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFS-VNGKPIYHFMGTSTFSQYTVVHDVSVA  160 (378)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEE
T ss_pred             CcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccc-cCCcccccccCCcceEeEEEechhheE
Confidence            9999999999999999999999999999999987543223322 34433332 344445555566799999999999999


Q ss_pred             EcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          176 KITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++|+++++++||.+++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.+
T Consensus       161 ~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~  220 (378)
T 3uko_A          161 KIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASR  220 (378)
T ss_dssp             ECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSC
T ss_pred             ECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence            999999999999999999999999888999999999999999999999999999999953

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=3e-43  Score=320.12  Aligned_cols=217  Identities=49%  Similarity=0.824  Sum_probs=182.3

Q ss_pred             CcccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccC
Q 025173           15 STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (256)
Q Consensus        15 ~~~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~   94 (256)
                      ++...|++||++++++++++++++++|.|+|+++||||||.+++||++|++.+.|.++  ..+|.++|||++|+|+++|+
T Consensus         2 ~~~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~   79 (373)
T 1p0f_A            2 CTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP--SKFPVILGHEAVGVVESIGA   79 (373)
T ss_dssp             CCTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCCEEEEEEEECT
T ss_pred             cccCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC--CCCCcccCcCceEEEEEECC
Confidence            3445788999999999987799999999999999999999999999999999999765  36899999999999999999


Q ss_pred             CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcE
Q 025173           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (256)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~  174 (256)
                      +|++|++||+|++.+...|+.|.+|++|++++|++.....+.|...+|..++. .+|..++.....|+|+||++++++++
T Consensus        80 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~  158 (373)
T 1p0f_A           80 GVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAV  158 (373)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEETTSE
T ss_pred             CCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccc-cCCcccccccCCccceeEEEEchhhE
Confidence            99999999999999888999999999999999998653211122222211110 01111111112359999999999999


Q ss_pred             EEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          175 VKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       175 ~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++|++++++ ||++++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+++
T Consensus       159 ~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~  218 (373)
T 1p0f_A          159 AKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASR  218 (373)
T ss_dssp             EEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSE
T ss_pred             EECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence            9999999999 99999999999999888899999999999999999999999999999953

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-42  Score=316.28  Aligned_cols=217  Identities=48%  Similarity=0.855  Sum_probs=182.9

Q ss_pred             cccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHH-hHcCCCCCCCCCCeeeeeeeeEEEEEccC
Q 025173           16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVT-FWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (256)
Q Consensus        16 ~~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~-~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~   94 (256)
                      +..+|++||++++.+++++++++++|.|+|+++||||||.+++||++|++ .+.|.++  ..+|.++|||++|+|+++|+
T Consensus         2 ~~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~   79 (374)
T 1cdo_A            2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK--DGFPVVLGHEGAGIVESVGP   79 (374)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT--TSCSEECCCCEEEEEEEECT
T ss_pred             CCCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC--CCCCcccCccceEEEEEECC
Confidence            34578899999999998779999999999999999999999999999999 8988765  46899999999999999999


Q ss_pred             CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcE
Q 025173           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (256)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~  174 (256)
                      +|++|++||+|++.+...|+.|.+|++|++++|++.....+.|...+|..++. .+|...+.....|+|+||++++++++
T Consensus        80 ~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~  158 (374)
T 1cdo_A           80 GVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAV  158 (374)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEE-ETTEEEEEGGGTCCSBSEEEEEGGGE
T ss_pred             CCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccc-cCCcccccccCCccceeEEEEchhhe
Confidence            99999999999998888999999999999999988653211122222211110 11111111122359999999999999


Q ss_pred             EEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          175 VKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       175 ~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++|+++++++||.+++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.+
T Consensus       159 ~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~  219 (374)
T 1cdo_A          159 AKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKR  219 (374)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred             EECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence            9999999999999999999999999888899999999999999999999999999999953

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=2.9e-42  Score=313.79  Aligned_cols=215  Identities=48%  Similarity=0.815  Sum_probs=181.3

Q ss_pred             ccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173           17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (256)
Q Consensus        17 ~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v   96 (256)
                      ..+|++||++++++++.+++++++|.|+|+++||||||.+++||++|++.+.|.++.  .+|.++|||++|+|+++|++|
T Consensus         3 ~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~P~v~GhE~~G~V~~vG~~v   80 (374)
T 2jhf_A            3 AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGEGV   80 (374)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECTTC
T ss_pred             CCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC--CCCcccCcCceEEEEEECCCC
Confidence            346889999999999877999999999999999999999999999999999997764  389999999999999999999


Q ss_pred             cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (256)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~  176 (256)
                      ++|++||+|++.+...|+.|.+|+.|++++|++.....+.|...+|..++. ..|..++.....|+|+||++++++.+++
T Consensus        81 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~  159 (374)
T 2jhf_A           81 TTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAK  159 (374)
T ss_dssp             CSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCccccc-ccccccccccCCccCeeEEEEchHHeEE
Confidence            999999999998888999999999999999998653211122222211110 0111111111235999999999999999


Q ss_pred             cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.
T Consensus       160 iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~  217 (374)
T 2jhf_A          160 IDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAA  217 (374)
T ss_dssp             CCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCS
T ss_pred             CCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999988889999999999999999999999999999995

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=2.8e-42  Score=314.06  Aligned_cols=216  Identities=44%  Similarity=0.800  Sum_probs=180.1

Q ss_pred             ccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173           17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (256)
Q Consensus        17 ~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v   96 (256)
                      .+.|++||++++.+++.+++++++|.|+|+++||||||.+++||++|++.+.|. +. ..+|.++|||++|+|+++|++|
T Consensus         3 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~-~~~P~v~GhE~~G~V~~vG~~v   80 (376)
T 1e3i_A            3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KK-ALFPVVLGHECAGIVESVGPGV   80 (376)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SC-CCSSBCCCCEEEEEEEEECTTC
T ss_pred             CCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CC-CCCCcccCccccEEEEEECCCC
Confidence            456889999999999867999999999999999999999999999999999886 33 4689999999999999999999


Q ss_pred             cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCc----cCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC
Q 025173           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFV----NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT  172 (256)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~----~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~  172 (256)
                      ++|++||+|++.+...|+.|.+|++|++++|++..    ...+.|...+|..++. .+|.........|+|+||++++++
T Consensus        81 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~  159 (376)
T 1e3i_A           81 TNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEA  159 (376)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGG
T ss_pred             ccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccc-cCCcccccccCCccceeEEEeccc
Confidence            99999999999888899999999999999998754    1000122212211100 011111111122599999999999


Q ss_pred             cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          173 HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       173 ~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      .++++|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+++
T Consensus       160 ~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~  222 (376)
T 1e3i_A          160 NLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASR  222 (376)
T ss_dssp             GEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred             cEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence            999999999999999999999999999888899999999999999999999999999999953

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=1.4e-42  Score=311.96  Aligned_cols=190  Identities=31%  Similarity=0.506  Sum_probs=177.4

Q ss_pred             cceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        22 t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      ||||+++++++.+++++++|.|+|++|||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|++|++|++
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v   81 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE   81 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence            69999999988789999999999999999999999999999999999988765578999999999999999999999999


Q ss_pred             CCEEe-eecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          102 GDLVL-PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       102 Gd~V~-~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      ||+|+ ..+...|+.|.+|+.|++++|.+...   .|...+|                   +|+||++++++.++++|++
T Consensus        82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  139 (340)
T 3s2e_A           82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQN---TGYSVNG-------------------GYGEYVVADPNYVGLLPDK  139 (340)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEECCTT
T ss_pred             CCEEEecCCCCCCCCChHHhCcCcccCccccc---cCCCCCC-------------------cceeEEEechHHEEECCCC
Confidence            99995 45677899999999999999998776   5666666                   9999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++||.+++++.|||+++ +..++++|++|||+|+|++|++++|+||.+|++
T Consensus       140 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~  192 (340)
T 3s2e_A          140 VGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGLR  192 (340)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCE
T ss_pred             CCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCe
Confidence            99999999999999999987 778999999999999999999999999999997

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=2.2e-42  Score=314.26  Aligned_cols=215  Identities=47%  Similarity=0.860  Sum_probs=180.5

Q ss_pred             cccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173           18 GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        18 ~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      ..|++||++++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|+
T Consensus         2 ~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~   80 (373)
T 2fzw_A            2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGVT   80 (373)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCC-CCCCccccccccEEEEEECCCCC
Confidence            45789999999999877999999999999999999999999999999999997654 46899999999999999999999


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      +|++||+|++.+...|+.|.+|+.|++++|++.....+.|...+|..++. ..|..++.....|+|+||++++++.++++
T Consensus        81 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~i  159 (373)
T 2fzw_A           81 KLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKI  159 (373)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCccccc-ccccccccccCCccceeEEEEchhheEEC
Confidence            99999999998888999999999999999987542100022112211110 01111111112359999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      |+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.
T Consensus       160 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~  216 (373)
T 2fzw_A          160 DPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGAS  216 (373)
T ss_dssp             CTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCS
T ss_pred             CCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            999999999999999999999988889999999999999999999999999999995

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=3e-42  Score=310.81  Aligned_cols=200  Identities=23%  Similarity=0.387  Sum_probs=172.9

Q ss_pred             cccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~   99 (256)
                      +++||++++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|
T Consensus         2 ~m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~V~~vG~~v~~~   80 (348)
T 3two_A            2 RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKE-GIYPMIPGHEIAGIIKEVGKGVKKF   80 (348)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSC-CCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             ceEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCC-CCCCeecCcceeEEEEEECCCCCCC
Confidence            468999999999877999999999999999999999999999999999998765 5789999999999999999999999


Q ss_pred             CCCCEEeeec-ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173          100 REGDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus       100 ~vGd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      ++||+|++.+ ...|+.|.+|+.|++++|.. ..   .+...+....    .     .....|+|+||+++++++++++|
T Consensus        81 ~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~~-~~---~~~~~~~~~~----~-----~~~~~G~~aey~~v~~~~~~~iP  147 (348)
T 3two_A           81 KIGDVVGVGCFVNSCKACKPCKEHQEQFCTK-VV---FTYDCLDSFH----D-----NEPHMGGYSNNIVVDENYVISVD  147 (348)
T ss_dssp             CTTCEEEECSEEECCSCSHHHHTTCGGGCTT-CE---ESSSSEEGGG----T-----TEECCCSSBSEEEEEGGGCEECC
T ss_pred             CCCCEEEEeCCcCCCCCChhHhCCCcccCcc-cc---cccccccccc----c-----CCcCCccccceEEechhhEEECC
Confidence            9999998755 36899999999999999983 22   2221110000    0     00011499999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++++||.+++++.|||+++ +..++++|++|||+|+|++|++++|+||.+|++
T Consensus       148 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~  202 (348)
T 3two_A          148 KNAPLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAE  202 (348)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCE
T ss_pred             CCCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCe
Confidence            9999999999999999999987 466999999999999999999999999999997

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.5e-42  Score=311.13  Aligned_cols=194  Identities=26%  Similarity=0.379  Sum_probs=173.2

Q ss_pred             ccccceeEEEecCCCCcEEEEeecCC-CCCCeEEEEEeeeecChhhHHhHcCCCC--CCCCCCeeeeeeeeEEEEEccCC
Q 025173           19 KIIRCRAAISRIPGKPLVMEEIEVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQP--PMAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~l~~~~~~~p~-~~~~eVlVkv~a~~i~~~D~~~~~g~~~--~~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      .|++||++++++++.+++++++|.|+ |+++||||||.+++||++|++.+.|.++  ....+|.++|||++|+|+++|++
T Consensus        12 ~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~   91 (359)
T 1h2b_A           12 GVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEG   91 (359)
T ss_dssp             -----CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTT
T ss_pred             ChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCC
Confidence            46789999999998669999999999 9999999999999999999999999764  11368999999999999999999


Q ss_pred             CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEE
Q 025173           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (256)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~  175 (256)
                      |++|++||+|+..+...|+.|.+|+.|++++|++...   .|...+|                   +|+||+++++++++
T Consensus        92 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~  149 (359)
T 1h2b_A           92 VEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GFAEFMRTSHRSVI  149 (359)
T ss_dssp             CCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEECGGGEE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc---cccCCCC-------------------cccceEEechHhEE
Confidence            9999999999888888999999999999999998754   4555555                   99999999999999


Q ss_pred             EcCCCCChhhhh---hchhhHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCC
Q 025173          176 KITPDIPLDIAC---LLSCGVSTGLGAAWKV-AEVEEGSTVAIFGLGAVGLSVLIRIHLK-FTR  234 (256)
Q Consensus       176 ~~p~~l~~~~aa---~l~~~~~ta~~~l~~~-~~~~~g~~VlI~GaG~vG~~aiqla~~~-G~~  234 (256)
                      ++|+++++++||   .+++++.|||+++.+. +++++|++|||+|+|++|++++|+||.+ |++
T Consensus       150 ~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~  213 (359)
T 1h2b_A          150 KLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPAT  213 (359)
T ss_dssp             ECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCE
T ss_pred             ECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence            999999999999   7888999999987655 8999999999999999999999999999 987

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=1.3e-41  Score=309.44  Aligned_cols=190  Identities=23%  Similarity=0.405  Sum_probs=176.4

Q ss_pred             cccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173           18 GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        18 ~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      ..|.+||++++++++. ++++++|.|+|+++||||||.|++||++|++.+.|.++.  .+|.++|||++|+|+++|++|+
T Consensus        19 ~~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~p~v~G~e~~G~V~~vG~~v~   95 (370)
T 4ej6_A           19 YFQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPS--TPPVTLGHEFCGIVVEAGSAVR   95 (370)
T ss_dssp             --CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSEECCCSEEEEEEEECTTCC
T ss_pred             ccchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCCC--CCCeecCcceEEEEEEECCCCC
Confidence            4588999999999976 999999999999999999999999999999999998754  7899999999999999999999


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      +|++||+|++.+...|+.|.+|+.|++++|.+...   .|...+|                   +|+||++++++.++++
T Consensus        96 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~~  153 (370)
T 4ej6_A           96 DIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRA---IGIHRDG-------------------GFAEYVLVPRKQAFEI  153 (370)
T ss_dssp             SSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCCEEEECCCCCCCCChHHhCcCcccCCCccc---cCCCCCC-------------------cceEEEEEchhhEEEC
Confidence            99999999999999999999999999999998776   5666666                   9999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      |+++++++|| +..++.|||+++ +.+++++|++|||+|+|++|++++|+|+++|++
T Consensus       154 P~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~  208 (370)
T 4ej6_A          154 PLTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGAT  208 (370)
T ss_dssp             CTTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCS
T ss_pred             CCCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            9999999998 566999999987 889999999999999999999999999999996

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.3e-42  Score=310.40  Aligned_cols=214  Identities=29%  Similarity=0.592  Sum_probs=176.4

Q ss_pred             ccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      .+++||++++++++.+++++++|.|+|+++||||||.+++||++|++.+.|.++.  .+|.++|||++|+|+++|++|++
T Consensus         3 ~~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~P~v~GhE~~G~V~~vG~~v~~   80 (371)
T 1f8f_A            3 ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV--PLPAVLGHEGSGIIEAIGPNVTE   80 (371)
T ss_dssp             -CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCEEEEEEEEECTTCCS
T ss_pred             ccccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCCC--CCCcccCcccceEEEEeCCCCCC
Confidence            3578999999998867999999999999999999999999999999999997653  67999999999999999999999


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCcee-eccccccceeeeEEecCCcEEEc
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVI-HNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~-~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      |++||+|++.+ ..|+.|.+|++|++++|++.......|...+|..++....|..+ ......|+|+||+++++++++++
T Consensus        81 ~~~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~i  159 (371)
T 1f8f_A           81 LQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKV  159 (371)
T ss_dssp             CCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEE
T ss_pred             CCCCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEEC
Confidence            99999999988 89999999999999999875421001111111100000000000 00011259999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      |+++++++||.+++++.|||+++.+.+++++|++|||+|+|++|++++|+||..|+++
T Consensus       160 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~  217 (371)
T 1f8f_A          160 TKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASI  217 (371)
T ss_dssp             CTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSE
T ss_pred             CCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence            9999999999999999999999878899999999999999999999999999999963

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=1.9e-41  Score=307.08  Aligned_cols=195  Identities=23%  Similarity=0.314  Sum_probs=172.3

Q ss_pred             ccccceeEEEecCCCCcEEEE--eecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173           19 KIIRCRAAISRIPGKPLVMEE--IEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~l~~~~--~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v   96 (256)
                      .|++||++++++++.++++++  +|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|
T Consensus         3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~GhE~~G~V~~vG~~v   81 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLGPKS   81 (360)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEECTTC
T ss_pred             CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCC-CCCCcccCcCceEEEEEeCCCC
Confidence            466899999999886688999  9999999999999999999999999999997654 4679999999999999999999


Q ss_pred             c-ccCCCCEEeee-cccCCCCCcccCCCCCCCCCcC-ccCC---CCCCCCCCCcccccCCCceeeccccccceeeeEEec
Q 025173           97 E-EVREGDLVLPV-FQGDCGECRDCKSPKSNICSKF-VNKD---NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD  170 (256)
Q Consensus        97 ~-~~~vGd~V~~~-~~~~c~~c~~~~~g~~~~c~~~-~~~~---~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~  170 (256)
                      + +|++||+|++. ....|+.|.+|+.|++++|++. ....   ..|...+|                   +|+||++++
T Consensus        82 ~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~v~  142 (360)
T 1piw_A           82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQG-------------------GYANYVRVH  142 (360)
T ss_dssp             CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCC-------------------SSBSEEEEE
T ss_pred             CCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCC-------------------cceeEEEEc
Confidence            9 99999999654 4568999999999999999875 1100   00223344                   999999999


Q ss_pred             CCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          171 VTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       171 ~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++++|+++++++||.+++++.|||+++.+ +++++|++|||+|+|++|++++|+||.+|++
T Consensus       143 ~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~  205 (360)
T 1piw_A          143 EHFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGAE  205 (360)
T ss_dssp             GGGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTCE
T ss_pred             hhheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            99999999999999999999999999998754 8999999999999999999999999999997

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=2.7e-41  Score=304.59  Aligned_cols=190  Identities=28%  Similarity=0.460  Sum_probs=159.8

Q ss_pred             cccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcC-CCC-CCCCCCeeeeeeeeEEEEEccCCCc
Q 025173           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS-TQP-PMAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g-~~~-~~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      +++||++++++++..++++++|.|+|+++||||||.+++||++|++.+.| .++ ....+|.++|||++|+|+++|++|+
T Consensus         2 m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   81 (348)
T 2d8a_A            2 SEKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVE   81 (348)
T ss_dssp             -CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred             CCcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCC
Confidence            45699999999984499999999999999999999999999999999998 443 1136799999999999999999999


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      +|++||+|++.+...|+.|.+|++|++++|++...   .|...+|                   +|+||++++++.++++
T Consensus        82 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~i  139 (348)
T 2d8a_A           82 GIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------VFAEYAVVPAQNIWKN  139 (348)
T ss_dssp             SCCTTCEEEECCEECCSCCC------------CEE---TTTSSCC-------------------SSBSEEEEEGGGEEEC
T ss_pred             cCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe---ecCCCCC-------------------cCcceEEeChHHeEEC
Confidence            99999999999888999999999999999998765   4544555                   9999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      |+++++++||++. ++.|||+++ +.+++ +|++|||+|+|++|++++|+|+..|+.
T Consensus       140 P~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~  193 (348)
T 2d8a_A          140 PKSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAY  193 (348)
T ss_dssp             CTTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            9999999999886 788999987 78889 999999999999999999999999993

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-41  Score=300.95  Aligned_cols=193  Identities=26%  Similarity=0.380  Sum_probs=175.2

Q ss_pred             ccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      +|.+||++++++++.+++++++|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|++|++
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG   81 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence            46789999999998669999999999999999999999999999999999977643568999999999999999999999


Q ss_pred             cCCCCEEeeecc-cCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           99 VREGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        99 ~~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      |++||+|++.+. ..|+.|.+|+.|++++|++...   .|...+|                   +|+||++++++.++++
T Consensus        82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~i  139 (347)
T 2hcy_A           82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL---SGYTHDG-------------------SFQQYATADAVQAAHI  139 (347)
T ss_dssp             CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEETTTSEEE
T ss_pred             CcCCCEEEEecCCCCCCCChhhhCCCcccCccccc---cccCCCC-------------------cceeEEEeccccEEEC
Confidence            999999997654 3599999999999999998765   4544556                   9999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      |+++++++||.+++++.|||+++ +..++++|++|||+|+ |++|++++|+|+..|++
T Consensus       140 P~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~  196 (347)
T 2hcy_A          140 PQGTDLAQVAPILCAGITVYKAL-KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYR  196 (347)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHH-HTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCCCHHHHHHHhhhHHHHHHHH-HhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCc
Confidence            99999999999999999999987 4558999999999999 99999999999999986

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=1.2e-40  Score=301.80  Aligned_cols=191  Identities=25%  Similarity=0.356  Sum_probs=172.6

Q ss_pred             ccccceeEEEecCCCCcEEEEeecC--------CCCCCeEEEEEeeeecChhhHHhHcCCC-C-CCCCCCeeeeeeeeEE
Q 025173           19 KIIRCRAAISRIPGKPLVMEEIEVD--------PPKAGEVRIKILCTSLCHSDVTFWRSTQ-P-PMAVFPRILGHEAVGV   88 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~l~~~~~~~p--------~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~-~~~~~p~~~G~e~vG~   88 (256)
                      ++++||++++.+++. ++++++|.|        +|+++||||||.+++||++|++.+.+.. . ....+|.++|||++|+
T Consensus         5 ~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~   83 (363)
T 3m6i_A            5 ASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGE   83 (363)
T ss_dssp             CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEE
T ss_pred             CcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEE
Confidence            578899999998877 999999999        9999999999999999999999987432 1 1246799999999999


Q ss_pred             EEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccceeeeE
Q 025173           89 VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYT  167 (256)
Q Consensus        89 Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~aey~  167 (256)
                      |+++|++|++|++||+|++.+...|+.|.+|+.|.++.|++...   .|.. .+|                   +|+||+
T Consensus        84 V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~~G-------------------~~aey~  141 (363)
T 3m6i_A           84 VIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF---LSTPPVPG-------------------LLRRYV  141 (363)
T ss_dssp             EEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTSTTSCC-------------------SCBSEE
T ss_pred             EEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccc---cCCCCCCc-------------------cceeEE
Confidence            99999999999999999999999999999999999999998765   3332 345                   999999


Q ss_pred             EecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          168 VVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       168 ~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++++.++++|+ +++++||++. ++.|||+++ +.+++++|++|||+|+|++|++++|+||.+|+++
T Consensus       142 ~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~  206 (363)
T 3m6i_A          142 NHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACP  206 (363)
T ss_dssp             EEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCS
T ss_pred             EEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence            999999999999 9999999884 888999987 8899999999999999999999999999999984

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=1e-40  Score=299.95  Aligned_cols=189  Identities=30%  Similarity=0.481  Sum_probs=172.2

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      ||++++++++.+++++++|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|++|++|++|
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG   80 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence            79999999986699999999999999999999999999999999999776434689999999999999999999999999


Q ss_pred             CEEeeecc-cCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          103 DLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       103 d~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      |+|++.+. ..|+.|.+|+.|++++|++...   .|...+|                   +|+||+++++++++++|+++
T Consensus        81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~~P~~~  138 (339)
T 1rjw_A           81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDNL  138 (339)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTTS
T ss_pred             CEEEEecCCCCCCCCchhhCcCcccCCCcce---eecCCCC-------------------cceeeEEechHHEEECCCCC
Confidence            99997654 3599999999999999998765   4544556                   99999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++||.+++++.|||+++. ..++++|++|||+|+|++|++++|+|+..|++
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~  190 (339)
T 1rjw_A          139 SFEEAAPIFCAGVTTYKALK-VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLN  190 (339)
T ss_dssp             CHHHHGGGGTHHHHHHHHHH-HHTCCTTCEEEEECCSTTHHHHHHHHHHTTCE
T ss_pred             CHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence            99999999999999999875 45899999999999999999999999999996

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=9.6e-41  Score=300.41  Aligned_cols=188  Identities=27%  Similarity=0.470  Sum_probs=170.9

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++++++.+++++++|.|+|+++||||||.+++||++|++.+.|.++.  ...+|.++|||++|+|+++|++|++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ   80 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence            799999999877999999999999999999999999999999999987541  136799999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|+..+...|+.|.+|+.|++++|++...   .|...+|                   +|+||+++++++++++|++
T Consensus        81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  138 (343)
T 2dq4_A           81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQI---LGVDRDG-------------------GFAEYVVVPAENAWVNPKD  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGEEEECTT
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCcce---ecCCCCC-------------------cceeEEEEchHHeEECCCC
Confidence            99999999888999999999999999998765   4444455                   9999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-C
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFT-R  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~-~  234 (256)
                      +++++||++. ++.|||+++.+.+++ +|++|||+|+|++|++++|+|+.+|+ +
T Consensus       139 ~~~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~  191 (343)
T 2dq4_A          139 LPFEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGP  191 (343)
T ss_dssp             SCHHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCS
T ss_pred             CCHHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence            9999999874 778999987548889 99999999999999999999999999 5

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.6e-40  Score=297.76  Aligned_cols=189  Identities=25%  Similarity=0.448  Sum_probs=167.3

Q ss_pred             ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC-CCCCCeeeeeeeeEEEEEccCCCccc
Q 025173           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-MAVFPRILGHEAVGVVESVGGGVEEV   99 (256)
Q Consensus        21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~   99 (256)
                      .+||++++++++.+++++++|.|+|+++||||||.+++||++|++.+.|.++. ...+|.++|||++|+|+++|++ ++|
T Consensus         2 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~   80 (344)
T 2h6e_A            2 VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKV   80 (344)
T ss_dssp             EEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCC
T ss_pred             ceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCC
Confidence            47999999999866999999999999999999999999999999999997652 2468999999999999999999 999


Q ss_pred             CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEec-CCcEEEcC
Q 025173          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD-VTHVVKIT  178 (256)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~-~~~~~~~p  178 (256)
                      ++||+|+..+...|+.|.+|+.|++++|++...   .|...+|                   +|+||++++ +++++++ 
T Consensus        81 ~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~i-  137 (344)
T 2h6e_A           81 KKGDNVVVYATWGDLTCRYCREGKFNICKNQII---PGQTTNG-------------------GFSEYMLVKSSRWLVKL-  137 (344)
T ss_dssp             CTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEESCGGGEEEE-
T ss_pred             CCCCEEEECCCCCCCCChhhhCCCcccCCCccc---cccccCC-------------------cceeeEEecCcccEEEe-
Confidence            999999888888999999999999999998654   4544555                   999999999 9999999 


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHh----cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCC
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKV----AEVEEGSTVAIFGLGAVGLSVLIRIHLK--FTR  234 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~----~~~~~g~~VlI~GaG~vG~~aiqla~~~--G~~  234 (256)
                      +++++++||.+++++.|||+++.+.    +++ +|++|||+|+|++|++++|+||.+  |++
T Consensus       138 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~  198 (344)
T 2h6e_A          138 NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNIT  198 (344)
T ss_dssp             SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTCE
T ss_pred             CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCCE
Confidence            9999999999999999999987654    288 999999999999999999999999  987

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.5e-40  Score=299.25  Aligned_cols=190  Identities=26%  Similarity=0.453  Sum_probs=175.1

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++++++.+  ++++++|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|++|++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            799999999875  889999999999999999999999999999999997654346899999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++.+...|+.|.+|+.|++++|++...   .|...+|                   +|+||++++++.++++|++
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~P~~  138 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQI---LGEHRHG-------------------TYAEYVVLPEANLAPKPKN  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTTSSCC-------------------SSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECCCCCcccchhhccCcccccccccc---cCcCCCc-------------------cceeEEEeChHHeEECCCC
Confidence            99999998888999999999999999998765   4544455                   9999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++||.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       139 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~  193 (343)
T 2eih_A          139 LSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGAR  193 (343)
T ss_dssp             SCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCE
T ss_pred             CCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCE
Confidence            9999999999999999998866679999999999999 99999999999999997

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=3.1e-40  Score=298.04  Aligned_cols=190  Identities=24%  Similarity=0.324  Sum_probs=172.3

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHH-hHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVT-FWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~-~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      |||++++++++ ++++++|.|+|+++||||||.+++||++|++ .+.|.++.  .+|.++|||++|+|+++|++|++|++
T Consensus         1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~--~~p~v~G~E~~G~V~~vG~~v~~~~v   77 (352)
T 3fpc_A            1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGE--RHNMILGHEAVGEVVEVGSEVKDFKP   77 (352)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCC--CSSEECCCEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCC--CCCcccCCcceEEEEEECCCCCcCCC
Confidence            89999999998 8999999999999999999999999999999 56887764  67999999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP  179 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~  179 (256)
                      ||+|++.+...|+.|.+|+.|+.++|.+.......+...+|                   +|+||+++++.  .++++|+
T Consensus        78 GdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G-------------------~~aey~~v~~~~~~~~~iP~  138 (352)
T 3fpc_A           78 GDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDG-------------------VFGEFFHVNDADMNLAHLPK  138 (352)
T ss_dssp             TCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCC-------------------SSBSCEEESSHHHHCEECCT
T ss_pred             CCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCC-------------------cccceEEeccccCeEEECCC
Confidence            99999988889999999999999999765432223334455                   99999999976  8999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++++++||++++++.|||+++ +.+++++|++|||+|+|++|++++|+||++|+.+
T Consensus       139 ~~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~  193 (352)
T 3fpc_A          139 EIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGR  193 (352)
T ss_dssp             TSCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSS
T ss_pred             CCCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence            999999999999999999986 8899999999999999999999999999999953

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.5e-40  Score=298.66  Aligned_cols=190  Identities=27%  Similarity=0.451  Sum_probs=169.1

Q ss_pred             cccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcC-CCCC-CCCCCeeeeeeeeEEEEEccCCCc
Q 025173           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS-TQPP-MAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g-~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      +++||++++++++. ++++++|.|+|+++||||||.+++||++|++.+.+ .++. ...+|.++|||++|+|+++|++|+
T Consensus         2 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   80 (352)
T 1e3j_A            2 ASDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK   80 (352)
T ss_dssp             --CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred             cccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCC
Confidence            45699999999876 99999999999999999999999999999999874 3321 135799999999999999999999


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~  176 (256)
                      +|++||+|++.+...|+.|.+|+.|++++|++...   .|.. .+|                   +|+||++++++++++
T Consensus        81 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~G-------------------~~aey~~v~~~~~~~  138 (352)
T 1e3j_A           81 HLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDDG-------------------NLARYYVHAADFCHK  138 (352)
T ss_dssp             SCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBCC-------------------SCBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc---cCcCCCCc-------------------cceeEEEeChHHeEE
Confidence            99999999998888999999999999999998764   3331 244                   999999999999999


Q ss_pred             cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +|+++++++||++ .++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|++
T Consensus       139 iP~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~  194 (352)
T 1e3j_A          139 LPDNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF  194 (352)
T ss_dssp             CCTTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence            9999999999876 4788999987 789999999999999999999999999999998

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=3.5e-40  Score=296.42  Aligned_cols=186  Identities=28%  Similarity=0.475  Sum_probs=171.7

Q ss_pred             ceeEEEecCCCCcEEEEeecCC-CCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~-~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      |||++++++|. ++++|+|.|+ +++|||||||.|+|||++|++.+.|..+.  .+|+++|||++|+|+++|++|+++++
T Consensus         1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~--~~P~i~G~E~~G~V~~vG~~V~~~~~   77 (346)
T 4a2c_A            1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH--YYPITLGHEFSGYIDAVGSGVDDLHP   77 (346)
T ss_dssp             CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSS--SSSBCCCCEEEEEEEEECTTCCSCCT
T ss_pred             CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCC--CCCccccEEEEEEEEEECCCcccccC
Confidence            89999999987 9999999998 57999999999999999999999987664  78999999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      ||+|.+.+...|+.|.+|+.|++++|.+...   .|...+|                   +|+||+++++++++++|+++
T Consensus        78 GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~l  135 (346)
T 4a2c_A           78 GDAVACVPLLPCFTCPECLKGFYSQCAKYDF---IGSRRDG-------------------GFAEYIVVKRKNVFALPTDM  135 (346)
T ss_dssp             TCEEEECCEECCSCSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEEEGGGEEECCTTS
T ss_pred             CCeEEeeeccCCCCcccccCCccccCCCccc---ccCCCCc-------------------ccccccccchheEEECCCCC
Confidence            9999999999999999999999999999876   6777777                   99999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++++||++. .+.++++ +.+..++++|++|||+|+|++|++++|+||++|++.
T Consensus       136 ~~~~aa~l~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~  187 (346)
T 4a2c_A          136 PIEDGAFIE-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKS  187 (346)
T ss_dssp             CGGGGGGHH-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred             CHHHHHhch-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcE
Confidence            999999875 4455555 568899999999999999999999999999999984

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=3.5e-40  Score=296.83  Aligned_cols=192  Identities=27%  Similarity=0.397  Sum_probs=170.9

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC-CCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-MAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      |||+++++++++++++++|.|+|++|||||||.+++||++|++.+.|.++. ...+|.++|||++|+|+++|++|++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            899999999988999999999999999999999999999999999997652 2468999999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCC-cCccC-CCCCCCCCCCcccccCCCceeeccccccceeeeEEec-CCcEEEcC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICS-KFVNK-DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD-VTHVVKIT  178 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~-~~~~~-~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~-~~~~~~~p  178 (256)
                      ||+|++.+...|+.|.+|+.+++++|. +.... ...|...+|                   +|+||++++ ++.++++|
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~~~~~p  141 (345)
T 3jv7_A           81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPG-------------------SMAEYMIVDSARHLVPIG  141 (345)
T ss_dssp             TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCC-------------------SSBSEEEESCGGGEEECT
T ss_pred             CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCc-------------------eeeEEEEecchhceEeCC
Confidence            999999999999999999999999994 32211 012333344                   999999999 99999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWK-VAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      + +++++||.+++++.|||+++.+ ..++++|++|||+|+|++|++++|+||++|..
T Consensus       142 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~  197 (345)
T 3jv7_A          142 D-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAA  197 (345)
T ss_dssp             T-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCC
T ss_pred             C-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            9 9999999999999999999866 45899999999999999999999999999554

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=3.5e-40  Score=298.25  Aligned_cols=189  Identities=24%  Similarity=0.406  Sum_probs=169.3

Q ss_pred             ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCC-CC-CCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ-PP-MAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~~-~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      ++||++++++++. ++++++|.|+|+++||||||.+++||++|++.+.+.. .. ...+|.++|||++|+|+++|++|++
T Consensus         6 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~   84 (356)
T 1pl8_A            6 PNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKH   84 (356)
T ss_dssp             CCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCS
T ss_pred             cCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCC
Confidence            6699999999876 9999999999999999999999999999999987432 11 1357999999999999999999999


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-CCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      |++||+|++.+...|+.|.+|+.|++++|++...   .|. ..+|                   +|+||+++++++++++
T Consensus        85 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~G-------------------~~aey~~v~~~~~~~i  142 (356)
T 1pl8_A           85 LKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDDG-------------------NLCRFYKHNAAFCYKL  142 (356)
T ss_dssp             CCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBCC-------------------SCBSEEEEEGGGEEEC
T ss_pred             CCCCCEEEEeccCCCCCChHHHCcCcccCCCccc---cCcCCCCC-------------------ccccEEEeehHHEEEC
Confidence            9999999999988999999999999999998654   333 2244                   9999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      |+++++++||++ .++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+.
T Consensus       143 P~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~  197 (356)
T 1pl8_A          143 PDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAA  197 (356)
T ss_dssp             CTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCS
T ss_pred             cCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            999999999876 4788999987 789999999999999999999999999999995

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.7e-40  Score=298.18  Aligned_cols=201  Identities=26%  Similarity=0.367  Sum_probs=169.8

Q ss_pred             CCCcccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEc
Q 025173           13 ASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESV   92 (256)
Q Consensus        13 ~~~~~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~v   92 (256)
                      .+....+.++||++++.++++.++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++
T Consensus        13 ~~~~~~~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~v   91 (369)
T 1uuf_A           13 TSLYKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAV   91 (369)
T ss_dssp             ----------CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEE
T ss_pred             hhhhHhcCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCC-CCCCeecccCceEEEEEE
Confidence            3444456889999999887777999999999999999999999999999999999987654 457999999999999999


Q ss_pred             cCCCcccCCCCEEeeecc-cCCCCCcccCCCCCCCCCcCccCCC-----CCCCCCCCcccccCCCceeeccccccceeee
Q 025173           93 GGGVEEVREGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDN-----QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEY  166 (256)
Q Consensus        93 G~~v~~~~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~-----~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey  166 (256)
                      |++|++|++||+|++.+. ..|+.|.+|++|++++|++......     .|...+|                   +|+||
T Consensus        92 G~~V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G-------------------~~aey  152 (369)
T 1uuf_A           92 GDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLG-------------------GYSQQ  152 (369)
T ss_dssp             CTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCC-------------------SSBSE
T ss_pred             CCCCCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCC-------------------cccce
Confidence            999999999999997664 4699999999999999987631100     0222334                   99999


Q ss_pred             EEecCCcEEEcCCC-CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          167 TVVDVTHVVKITPD-IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       167 ~~v~~~~~~~~p~~-l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++++.++++|++ +++++||.+++++.|||+++. .+++++|++|||+|+|++|++++|+|+.+|++
T Consensus       153 v~v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~  220 (369)
T 1uuf_A          153 IVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLR-HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH  220 (369)
T ss_dssp             EEEEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             EEEcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            99999999999999 999999999999999999875 46899999999999999999999999999998

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=2.5e-39  Score=293.57  Aligned_cols=198  Identities=20%  Similarity=0.168  Sum_probs=168.9

Q ss_pred             ccCCCcccccccceeEEEecCC-CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEE
Q 025173           11 KNASSTAGKIIRCRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVV   89 (256)
Q Consensus        11 ~~~~~~~~~~~t~ka~~~~~~g-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~V   89 (256)
                      ++...+..+|.+||++++++++ +.++++++|.|+|++|||||||.+++||++|++.+.|.++....+|.++|||++|+|
T Consensus        16 ~~~~~~~~m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V   95 (363)
T 3uog_A           16 ENLYFQSMMSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVV   95 (363)
T ss_dssp             -------CCCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEE
T ss_pred             ceeEEeccCchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEE
Confidence            3444444568889999999764 239999999999999999999999999999999999987754678999999999999


Q ss_pred             EEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCC-CCCCCCCCcccccCCCceeeccccccceeeeEE
Q 025173           90 ESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN-QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV  168 (256)
Q Consensus        90 v~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~-~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~  168 (256)
                      +++|++|++|++||+|++.+..      .|+.|. +.|.+...... .|...+|                   +|+||++
T Consensus        96 ~~vG~~v~~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~~~G-------------------~~aey~~  149 (363)
T 3uog_A           96 EAVGKSVTRFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGAHPG-------------------VLSEYVV  149 (363)
T ss_dssp             EEECTTCCSCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTTSCC-------------------CCBSEEE
T ss_pred             EEECCCCCCCCCCCEEEEeccc------cccccc-cccccccccccccCcCCCC-------------------cceeEEE
Confidence            9999999999999999986543      567777 88875322111 3444555                   9999999


Q ss_pred             ecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          169 VDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       169 v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++.++++|+++++++||.+++++.|||+++.+.+++++|++|||+|+|++|++++|+|+..|++
T Consensus       150 v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~  215 (363)
T 3uog_A          150 LPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAE  215 (363)
T ss_dssp             EEGGGEEECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCE
T ss_pred             echHHeEECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence            999999999999999999999999999999987889999999999999999999999999999997

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=1.7e-39  Score=294.06  Aligned_cols=195  Identities=26%  Similarity=0.384  Sum_probs=170.3

Q ss_pred             ccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      .+++|+++++.++.+.++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++
T Consensus         6 ~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~v~~   84 (357)
T 2cf5_A            6 AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSK   84 (357)
T ss_dssp             CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTC-CCSSBCCCCEEEEEEEEECSSCCS
T ss_pred             CcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCC-CCCCeecCcceeEEEEEECCCCCC
Confidence            4678999998877666999999999999999999999999999999999987654 468999999999999999999999


Q ss_pred             cCCCCEEeeec-ccCCCCCcccCCCCCCCCCcCccCCC----CCCCCCCCcccccCCCceeeccccccceeeeEEecCCc
Q 025173           99 VREGDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDN----QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH  173 (256)
Q Consensus        99 ~~vGd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~----~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~  173 (256)
                      |++||+|++.+ ...|+.|.+|+.|++++|++......    .|...+                   |+|+||+++++++
T Consensus        85 ~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~  145 (357)
T 2cf5_A           85 FTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQ-------------------GGFAKATVVHQKF  145 (357)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCC-------------------CSSBSCEEEEGGG
T ss_pred             CCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCC-------------------CccccEEEechhh
Confidence            99999998644 35799999999999999975432100    011123                   3999999999999


Q ss_pred             EEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          174 VVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVE-EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       174 ~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++|+++++++||.+++++.|||+++ +..+++ +|++|||+|+|++|++++|+||.+|++
T Consensus       146 ~~~~P~~ls~~~aa~l~~~~~ta~~~l-~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~  206 (357)
T 2cf5_A          146 VVKIPEGMAVEQAAPLLCAGVTVYSPL-SHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHH  206 (357)
T ss_dssp             EEECCSSCCHHHHTGGGTHHHHHHHHH-HHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCE
T ss_pred             EEECcCCCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCe
Confidence            999999999999999999999999986 457888 999999999999999999999999997

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.3e-39  Score=295.48  Aligned_cols=189  Identities=29%  Similarity=0.429  Sum_probs=169.9

Q ss_pred             cccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc--
Q 025173           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE--   97 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~--   97 (256)
                      ..+||+++++++++.++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++| +|+  
T Consensus        15 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~P~v~GhE~~G~V~~vG-~V~~~   92 (380)
T 1vj0_A           15 GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEVN-GEKRD   92 (380)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEES-SCCBC
T ss_pred             hhheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCC-CCCCcccCcCcEEEEEEeC-Ccccc
Confidence            456999999999844999999999999999999999999999999999997653 4689999999999999999 999  


Q ss_pred             ----ccCCCCEEeeecccCCCCCcccC-CCCCCCCCcCccCCCCCC--------CCCCCcccccCCCceeecccccccee
Q 025173           98 ----EVREGDLVLPVFQGDCGECRDCK-SPKSNICSKFVNKDNQSM--------PRDGTNRFRDLKGEVIHNVLNVSSFT  164 (256)
Q Consensus        98 ----~~~vGd~V~~~~~~~c~~c~~~~-~g~~~~c~~~~~~~~~g~--------~~~G~~~~~~~~~~~~~~~~~~g~~a  164 (256)
                          +|++||+|++.+...|+.|.+|+ .|++++|++...   .|.        ..+|                   +|+
T Consensus        93 ~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~---~g~~~~~~~~~~~~G-------------------~~a  150 (380)
T 1vj0_A           93 LNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGCSEYPHLRG-------------------CYS  150 (380)
T ss_dssp             TTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCSSSTTCCCS-------------------SSB
T ss_pred             ccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce---eccccccCCCCCCCc-------------------ccc
Confidence                99999999999888999999999 999999988654   232        2234                   999


Q ss_pred             eeEEe-cCCcEEEcCCCCChh-hhhhchhhHHHHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCC-C
Q 025173          165 EYTVV-DVTHVVKITPDIPLD-IACLLSCGVSTGLGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFT-R  234 (256)
Q Consensus       165 ey~~v-~~~~~~~~p~~l~~~-~aa~l~~~~~ta~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~-~  234 (256)
                      ||+++ +++.++++|++++++ +|+++. ++.|||+++ +.++ +++|++|||+|+|++|++++|+||.+|+ +
T Consensus       151 ey~~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~  222 (380)
T 1vj0_A          151 SHIVLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAEN  222 (380)
T ss_dssp             SEEEECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSE
T ss_pred             ceEEEcccceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCce
Confidence            99999 999999999999999 666666 999999987 6788 9999999999999999999999999996 5

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=2.5e-39  Score=291.64  Aligned_cols=188  Identities=28%  Similarity=0.393  Sum_probs=171.8

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC-------CCCCCeeeeeeeeEEEEEccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-------MAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-------~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      ||++++++++.+++++++|.|+|+++||||||.+++||++|++.+.|.++.       ...+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            799999999866999999999999999999999999999999999886541       2468999999999999999999


Q ss_pred             CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC-CcE
Q 025173           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-THV  174 (256)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~-~~~  174 (256)
                      |++|++||+|+..+...|+.|.+|+.|++++|++...   .|...+|                   +|+||+++++ +.+
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~  138 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc---ccccCCC-------------------cceeEEEecCccce
Confidence            9999999999888888999999999999999998765   4544555                   9999999999 999


Q ss_pred             EEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHc-CCC
Q 025173          175 VKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLK-FTR  234 (256)
Q Consensus       175 ~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~-G~~  234 (256)
                      +++ +++++++||.+++++.|||+++ +++++++|++|||+|+ |++|++++|+|+.. |++
T Consensus       139 ~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~  198 (347)
T 1jvb_A          139 YKL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT  198 (347)
T ss_dssp             EEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCE
T ss_pred             EEe-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCe
Confidence            999 9999999999999999999987 5689999999999999 59999999999999 987

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=5.8e-39  Score=291.53  Aligned_cols=195  Identities=23%  Similarity=0.351  Sum_probs=166.9

Q ss_pred             ccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      .+|+|+++...+....++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++
T Consensus        13 ~~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~   91 (366)
T 1yqd_A           13 HPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGF-SMYPLVPGHEIVGEVTEVGSKVKK   91 (366)
T ss_dssp             SSEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSC-CCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             CCeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCC-CCCCEecccceEEEEEEECCCCCc
Confidence            3555666666555455999999999999999999999999999999999987654 468999999999999999999999


Q ss_pred             cCCCCEEeeec-ccCCCCCcccCCCCCCCCCcCccCCC----CCCCCCCCcccccCCCceeeccccccceeeeEEecCCc
Q 025173           99 VREGDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDN----QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH  173 (256)
Q Consensus        99 ~~vGd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~----~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~  173 (256)
                      |++||+|++.+ ...|+.|.+|+.|++++|++......    .|...+                   |+|+||+++++++
T Consensus        92 ~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~  152 (366)
T 1yqd_A           92 VNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITY-------------------GGYSNHMVANERY  152 (366)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCC-------------------CSSBSEEEEEGGG
T ss_pred             CCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCC-------------------CccccEEEEchhh
Confidence            99999998654 35799999999999999966532110    011123                   3999999999999


Q ss_pred             EEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          174 VVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVE-EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       174 ~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++|+++++++||.+++++.|||+++. ..+++ +|++|||+|+|++|++++|+|+..|++
T Consensus       153 ~~~~P~~ls~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~  213 (366)
T 1yqd_A          153 IIRFPDNMPLDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSK  213 (366)
T ss_dssp             CEECCTTSCTTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             EEECCCCCCHHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            9999999999999999999999999864 56788 999999999999999999999999997

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=3.8e-39  Score=295.67  Aligned_cols=190  Identities=26%  Similarity=0.365  Sum_probs=168.4

Q ss_pred             cceeEEEecCCCCcEEEEeecCCC-CC-----CeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173           22 RCRAAISRIPGKPLVMEEIEVDPP-KA-----GEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        22 t~ka~~~~~~g~~l~~~~~~~p~~-~~-----~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      +||++++++++. ++++++|.|+| ++     +||||||.+++||++|++.+.|.++  ..+|.++|||++|+|+++|++
T Consensus         2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~--~~~p~v~GhE~~G~V~~vG~~   78 (398)
T 2dph_A            2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI--VPKGHVLGHEITGEVVEKGSD   78 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC--CCTTCBCCCCEEEEEEEECTT
T ss_pred             ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC--CCCCcccCCceEEEEEEECCC
Confidence            699999999876 99999999987 68     9999999999999999999998754  367999999999999999999


Q ss_pred             CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccC-----CCCCC---CCCCCcccccCCCceeeccccccceeeeE
Q 025173           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNK-----DNQSM---PRDGTNRFRDLKGEVIHNVLNVSSFTEYT  167 (256)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~-----~~~g~---~~~G~~~~~~~~~~~~~~~~~~g~~aey~  167 (256)
                      |++|++||+|++.+...|+.|.+|++|++++|++....     ...|.   ..+                   |+|+||+
T Consensus        79 v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~-------------------G~~aey~  139 (398)
T 2dph_A           79 VELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWS-------------------GGQAEYV  139 (398)
T ss_dssp             CCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCC-------------------CSSBSEE
T ss_pred             CCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCC-------------------ceeeeeE
Confidence            99999999999988889999999999999999872110     00121   112                   3999999


Q ss_pred             EecCC--cEEEcCCCCChhh----hhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          168 VVDVT--HVVKITPDIPLDI----ACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       168 ~v~~~--~~~~~p~~l~~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++  .++++|+++++++    ||.+++++.|||+++ +.+++++|++|||+|+|++|++++|+||.+|+.
T Consensus       140 ~v~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~  211 (398)
T 2dph_A          140 LVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAA  211 (398)
T ss_dssp             EESSHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCS
T ss_pred             EeccccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            99987  8999999999998    888999999999987 789999999999999999999999999999994

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.4e-39  Score=294.99  Aligned_cols=191  Identities=28%  Similarity=0.376  Sum_probs=168.5

Q ss_pred             cceeEEEecCCCCcEEEEeecCCCC-CCe------EEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccC
Q 025173           22 RCRAAISRIPGKPLVMEEIEVDPPK-AGE------VRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (256)
Q Consensus        22 t~ka~~~~~~g~~l~~~~~~~p~~~-~~e------VlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~   94 (256)
                      +||++++.+++. ++++++|.|+|+ ++|      |||||.+++||++|++.+.|.++.  .+|.++|||++|+|+++|+
T Consensus         2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~p~v~GhE~~G~V~~vG~   78 (398)
T 1kol_A            2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA--QVGLVLGHEITGEVIEKGR   78 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC--CTTCBCCCCEEEEEEEECT
T ss_pred             ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCCC--CCCcccCcccEEEEEEECC
Confidence            599999999876 999999999997 888      999999999999999999987643  5789999999999999999


Q ss_pred             CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCC---CCCC----CCCCCcccccCCCceeeccccccceeeeE
Q 025173           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD---NQSM----PRDGTNRFRDLKGEVIHNVLNVSSFTEYT  167 (256)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~---~~g~----~~~G~~~~~~~~~~~~~~~~~~g~~aey~  167 (256)
                      +|++|++||+|++.+...|+.|++|++|++++|++.....   ..|.    ..+                   |+|+||+
T Consensus        79 ~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~-------------------G~~aey~  139 (398)
T 1kol_A           79 DVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWT-------------------GGQAEYV  139 (398)
T ss_dssp             TCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBC-------------------CCSBSEE
T ss_pred             CCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCC-------------------ceeeeEE
Confidence            9999999999998888899999999999999998764210   0111    112                   3999999


Q ss_pred             EecCC--cEEEcCCCCChhh----hhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          168 VVDVT--HVVKITPDIPLDI----ACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       168 ~v~~~--~~~~~p~~l~~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++++  +++++|+++++++    +|.+++++.|||+++ +.+++++|++|||+|+|++|++++|+||.+|+++
T Consensus       140 ~v~~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~  212 (398)
T 1kol_A          140 LVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAV  212 (398)
T ss_dssp             EESSHHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred             EecchhCeEEECCCCcchhhhcccccccccHHHHHHHHH-HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCe
Confidence            99986  8999999999888    788889999999987 4789999999999999999999999999999963

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=1.9e-38  Score=285.29  Aligned_cols=187  Identities=26%  Similarity=0.391  Sum_probs=170.2

Q ss_pred             ceeEEEecCC-CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        23 ~ka~~~~~~g-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      |||+++...+ ..++++|.|+|+|++|||||||.|+|||++|++++.|.++.  ++|.++|||++|+|+++|++|++|++
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~--~~p~i~GhE~aG~V~~vG~~V~~~~~   78 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN--KAGTVLGHEGIGIVKEIGADVSSLQV   78 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC--CTTCBCCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC--CCCcccceeEEEEEEEECceeeeccc
Confidence            8999996543 34899999999999999999999999999999999998875  78999999999999999999999999


Q ss_pred             CCEEeeecc-cCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          102 GDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       102 Gd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      ||+|++.+. ..|+.|.+|..+..+.|.....   .+...+|                   +|+||+.++++.++++|++
T Consensus        79 GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~G-------------------~~ae~~~~~~~~~~~iP~~  136 (348)
T 4eez_A           79 GDRVSVAWFFEGCGHCEYCVSGNETFCREVKN---AGYSVDG-------------------GMAEEAIVVADYAVKVPDG  136 (348)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGSCBCCTT
T ss_pred             CCeEeecccccccCccccccCCcccccccccc---cccccCC-------------------cceeeccccccceeecCCC
Confidence            999987665 4578899999999999998876   5666666                   9999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++||++++++.|||+++ +.+++++||+|||+|+|++|++++|+|+..+..
T Consensus       137 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~  189 (348)
T 4eez_A          137 LDPIEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGA  189 (348)
T ss_dssp             SCHHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCC
T ss_pred             CCHHHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCC
Confidence            99999999999999999975 788999999999999999999999999988655

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=8.2e-39  Score=294.07  Aligned_cols=196  Identities=25%  Similarity=0.333  Sum_probs=173.0

Q ss_pred             cccccccceeEEEecCCCCcEEEEeecCC-CCCCeEEEEEeeeecChhhHHhHcCCC------CCCCCCCeeeeeeeeEE
Q 025173           16 TAGKIIRCRAAISRIPGKPLVMEEIEVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQ------PPMAVFPRILGHEAVGV   88 (256)
Q Consensus        16 ~~~~~~t~ka~~~~~~g~~l~~~~~~~p~-~~~~eVlVkv~a~~i~~~D~~~~~g~~------~~~~~~p~~~G~e~vG~   88 (256)
                      ....+.+|+++++..++. ++++++|.|+ |+++||||||.+++||++|++.+.|..      +....+|.++|||++|+
T Consensus        24 ~~~~~~~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~  102 (404)
T 3ip1_A           24 DIEGKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGV  102 (404)
T ss_dssp             CBTTTBBSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEE
T ss_pred             hhhhhhhcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEE
Confidence            334566777777777665 9999999999 999999999999999999999998642      22246899999999999


Q ss_pred             EEEccCCC------cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccc
Q 025173           89 VESVGGGV------EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSS  162 (256)
Q Consensus        89 Vv~vG~~v------~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~  162 (256)
                      |+++|++|      ++|++||+|++.+...|+.|.+|+.|++++|++...   .|...+|                   +
T Consensus       103 V~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~  160 (404)
T 3ip1_A          103 VVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE---LGFNVDG-------------------A  160 (404)
T ss_dssp             EEEECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------S
T ss_pred             EEEECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc---cCCCCCC-------------------C
Confidence            99999999      899999999999989999999999999999999876   5666666                   9


Q ss_pred             eeeeEEecCCcEEEcCCCCC------hhhhhhchhhHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          163 FTEYTVVDVTHVVKITPDIP------LDIACLLSCGVSTGLGAAWKV-AEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       163 ~aey~~v~~~~~~~~p~~l~------~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      |+||++++++.++++|++++      +.++|+++.++.|||+++... +++++|++|||+|+|++|++++|+||.+|+.
T Consensus       161 ~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~  239 (404)
T 3ip1_A          161 FAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGAS  239 (404)
T ss_dssp             SBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCS
T ss_pred             CcceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            99999999999999999885      456888888999999987655 4899999999999999999999999999995

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=8.4e-39  Score=289.33  Aligned_cols=186  Identities=20%  Similarity=0.247  Sum_probs=166.5

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCC---CeeeeeeeeEEEEEccCCCccc
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF---PRILGHEAVGVVESVGGGVEEV   99 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~---p~~~G~e~vG~Vv~vG~~v~~~   99 (256)
                      |||+++++++++++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+   |.++|||++| |+++|++ ++|
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~~p~v~G~E~~G-V~~vG~~-~~~   77 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGG-FPEGEDHLVLGHEAVG-VVVDPND-TEL   77 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTT-SCTTCSEEECCSEEEE-EEEECTT-SSC
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCC-CCCCCCCcccCceeEE-EEEECCC-CCC
Confidence            799999998877999999999999999999999999999999999997654 356   8999999999 9999999 999


Q ss_pred             CCCCEEeeecccC--CCCCcccCCCCCCCCCcCccCCCC--CC-CCCCCcccccCCCceeeccccccceeeeEEecCCcE
Q 025173          100 REGDLVLPVFQGD--CGECRDCKSPKSNICSKFVNKDNQ--SM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (256)
Q Consensus       100 ~vGd~V~~~~~~~--c~~c~~~~~g~~~~c~~~~~~~~~--g~-~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~  174 (256)
                      ++||+|++.+...  |+.|.+|+.|++++|++...   .  |. ..+|                   +|+||++++++.+
T Consensus        78 ~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~~~g~~~~~G-------------------~~aey~~v~~~~~  135 (357)
T 2b5w_A           78 EEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMY---FERGIVGAHG-------------------YMSEFFTSPEKYL  135 (357)
T ss_dssp             CTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSC---EEETTBEECC-------------------SCBSEEEEEGGGE
T ss_pred             CCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcc---cccCccCCCc-------------------ceeeEEEEchHHe
Confidence            9999999888777  99999999999999988654   2  32 2344                   9999999999999


Q ss_pred             EEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCC------CEEEEECCCHHHHHH-HHHH-HHcCCCcc
Q 025173          175 VKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEG------STVAIFGLGAVGLSV-LIRI-HLKFTRHT  236 (256)
Q Consensus       175 ~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g------~~VlI~GaG~vG~~a-iqla-~~~G~~~~  236 (256)
                      +++|++++ ++| +++.++.|||+++ +.+++++|      ++|||+|+|++|+++ +|+| |.+|++++
T Consensus       136 ~~iP~~~~-~~a-al~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~V  202 (357)
T 2b5w_A          136 VRIPRSQA-ELG-FLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENL  202 (357)
T ss_dssp             EECCGGGS-TTG-GGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEE
T ss_pred             EECCCCcc-hhh-hhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEE
Confidence            99999999 654 5777999999987 77889999      999999999999999 9999 99999743

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=1.8e-37  Score=288.39  Aligned_cols=196  Identities=18%  Similarity=0.162  Sum_probs=168.4

Q ss_pred             cccccccceeEEEecCC-------------CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHc--------------
Q 025173           16 TAGKIIRCRAAISRIPG-------------KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR--------------   68 (256)
Q Consensus        16 ~~~~~~t~ka~~~~~~g-------------~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~--------------   68 (256)
                      +...|.|||++++++++             +.++++++|.|+|+++||||||.+++||++|++...              
T Consensus        18 ~~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~   97 (447)
T 4a0s_A           18 AAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNA   97 (447)
T ss_dssp             HSCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHH
T ss_pred             ccCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhc
Confidence            33579999999999987             239999999999999999999999999999986432              


Q ss_pred             --CCCCCCCCCC-eeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCC-CCCc
Q 025173           69 --STQPPMAVFP-RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR-DGTN  144 (256)
Q Consensus        69 --g~~~~~~~~p-~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~-~G~~  144 (256)
                        +.++....+| .++|||++|+|+++|++|++|++||+|++.+...|+.|. |..+..+.|.+...   .|... +|  
T Consensus        98 ~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~-~~~~~~~~c~~~~~---~G~~~~~G--  171 (447)
T 4a0s_A           98 RQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEP-ATHGDGMLGTEQRA---WGFETNFG--  171 (447)
T ss_dssp             TTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSG-GGGTCTTCSTTCEE---TTTTSSSC--
T ss_pred             ccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccc-cccccccccccccc---ccccCCCC--
Confidence              2222213466 699999999999999999999999999998877777665 55578899988776   45443 24  


Q ss_pred             ccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHH--hcCCCCCCEEEEECC-CHHH
Q 025173          145 RFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWK--VAEVEEGSTVAIFGL-GAVG  221 (256)
Q Consensus       145 ~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~Ga-G~vG  221 (256)
                                       +|+||+++++++++++|+++++++||++++++.|||+++.+  .+++++|++|||+|+ |++|
T Consensus       172 -----------------~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG  234 (447)
T 4a0s_A          172 -----------------GLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLG  234 (447)
T ss_dssp             -----------------SSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHH
T ss_pred             -----------------ceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHH
Confidence                             99999999999999999999999999999999999998764  489999999999998 9999


Q ss_pred             HHHHHHHHHcCCC
Q 025173          222 LSVLIRIHLKFTR  234 (256)
Q Consensus       222 ~~aiqla~~~G~~  234 (256)
                      ++++|+|+..|++
T Consensus       235 ~~a~qla~~~Ga~  247 (447)
T 4a0s_A          235 SYAIQFVKNGGGI  247 (447)
T ss_dssp             HHHHHHHHHTTCE
T ss_pred             HHHHHHHHHcCCE
Confidence            9999999999998

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=6.3e-37  Score=272.35  Aligned_cols=166  Identities=18%  Similarity=0.254  Sum_probs=152.0

Q ss_pred             cccceeEEEec-CCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           20 IIRCRAAISRI-PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        20 ~~t~ka~~~~~-~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      +.|||++++++ ++. ++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++
T Consensus         2 M~tMka~~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~   79 (315)
T 3goh_A            2 MEQHQVWAYQTKTHS-VTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPIN-WSNGHVPGVDGAGVIVKVGAKVDS   79 (315)
T ss_dssp             CCEEEEEEEETTTTE-EEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTC-CCTTCCCCSEEEEEEEEECTTSCG
T ss_pred             CcceEEEEEeCCCCe-eEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCc-CCCCCEeeeeeEEEEEEeCCCCCC
Confidence            45799999995 444 999999999999999999999999999999999998765 578999999999999999999999


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      |++||+|+..+.                           ...+|                   +|+||++++++.++++|
T Consensus        80 ~~vGdrV~~~~~---------------------------~~~~G-------------------~~aey~~v~~~~~~~iP  113 (315)
T 3goh_A           80 KMLGRRVAYHTS---------------------------LKRHG-------------------SFAEFTVLNTDRVMTLP  113 (315)
T ss_dssp             GGTTCEEEEECC---------------------------TTSCC-------------------SSBSEEEEETTSEEECC
T ss_pred             CCCCCEEEEeCC---------------------------CCCCc-------------------ccccEEEEcHHHhccCc
Confidence            999999987532                           12234                   99999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++++||++++++.|||+++ +.+++++|++|||+|+|++|++++|+||..|++
T Consensus       114 ~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~  168 (315)
T 3goh_A          114 DNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYV  168 (315)
T ss_dssp             TTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCE
T ss_pred             CCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence            9999999999999999999998 899999999999999999999999999999996

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=1.5e-37  Score=282.09  Aligned_cols=184  Identities=24%  Similarity=0.386  Sum_probs=160.6

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCC-CeEEEEEeeeecChhhHHhHcC--CCCCCCCC---CeeeeeeeeEEEEEccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKA-GEVRIKILCTSLCHSDVTFWRS--TQPPMAVF---PRILGHEAVGVVESVGGGV   96 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~-~eVlVkv~a~~i~~~D~~~~~g--~~~~~~~~---p~~~G~e~vG~Vv~vG~~v   96 (256)
                      |||+++++++.+++++++|.|+|++ +||||||.+++||++|++.+.|  .++. ..+   |.++|||++|+|++  ++ 
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~~~~~p~v~G~E~~G~V~~--~~-   76 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLST-LPKGKDFLVLGHEAIGVVEE--SY-   76 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC--------CCSCEECCSEEEEEECS--CC-
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCC-CCcCCCCCcCCcceEEEEEe--CC-
Confidence            7999999988769999999999999 9999999999999999999998  5542 356   99999999999999  66 


Q ss_pred             cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCC--CCC-CCCCcccccCCCceeeccccccceeeeEEecCCc
Q 025173           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ--SMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH  173 (256)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~--g~~-~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~  173 (256)
                      ++|++||+|++.+...|+.|.+|+.|++++|++...   .  |.. .+|                   +|+||++++++.
T Consensus        77 ~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~~~g~~~~~G-------------------~~aey~~v~~~~  134 (366)
T 2cdc_A           77 HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEF---GEAGIHKMDG-------------------FMREWWYDDPKY  134 (366)
T ss_dssp             SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCC---EEETTBEECC-------------------SCBSEEEECGGG
T ss_pred             CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCc---ccCCccCCCC-------------------ceeEEEEechHH
Confidence            889999999998888999999999999999987653   2  322 344                   999999999999


Q ss_pred             EEEcCCCCChhhhhhchhhHHHHHHHHH--H--hcCCC--C-------CCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          174 VVKITPDIPLDIACLLSCGVSTGLGAAW--K--VAEVE--E-------GSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       174 ~~~~p~~l~~~~aa~l~~~~~ta~~~l~--~--~~~~~--~-------g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++|++++ ++|+ ++.++.|||+++.  +  .++++  +       |++|||+|+|++|++++|+|+..|++
T Consensus       135 ~~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~  206 (366)
T 2cdc_A          135 LVKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLE  206 (366)
T ss_dssp             EEEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTCE
T ss_pred             eEECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence            999999999 8775 6679999999886  4  78888  8       99999999999999999999999996

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=2.1e-37  Score=288.85  Aligned_cols=195  Identities=16%  Similarity=0.144  Sum_probs=168.9

Q ss_pred             ccccccceeEEEecCC---------------CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCC---------
Q 025173           17 AGKIIRCRAAISRIPG---------------KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP---------   72 (256)
Q Consensus        17 ~~~~~t~ka~~~~~~g---------------~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~---------   72 (256)
                      .+.|.||||+++++++               +.++++++|.|+|+++||||||.+++||++|++...+...         
T Consensus        25 ~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~  104 (456)
T 3krt_A           25 LPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERY  104 (456)
T ss_dssp             SCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHH
T ss_pred             CCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhc
Confidence            3568999999999862               3389999999999999999999999999999987543210         


Q ss_pred             -------CCCCCC-eeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCC-CCC
Q 025173           73 -------PMAVFP-RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR-DGT  143 (256)
Q Consensus        73 -------~~~~~p-~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~-~G~  143 (256)
                             ....+| .++|||++|+|+++|++|++|++||+|++.+. .|..|..|..+..+.|++...   .|... +| 
T Consensus       105 g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~---~G~~~~~G-  179 (456)
T 3krt_A          105 GRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRI---WGFETNFG-  179 (456)
T ss_dssp             HTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEE---TTTTSSSC-
T ss_pred             cccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccc---cccCCCCC-
Confidence                   012467 69999999999999999999999999998654 588888898999999988776   45433 24 


Q ss_pred             cccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHh--cCCCCCCEEEEECC-CHH
Q 025173          144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKV--AEVEEGSTVAIFGL-GAV  220 (256)
Q Consensus       144 ~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~Ga-G~v  220 (256)
                                        +|+||+++++++++++|+++++++||.+++++.|||+++...  +++++|++|||+|+ |++
T Consensus       180 ------------------~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~v  241 (456)
T 3krt_A          180 ------------------GLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGL  241 (456)
T ss_dssp             ------------------SSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHH
T ss_pred             ------------------cccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHH
Confidence                              999999999999999999999999999999999999987654  78999999999998 999


Q ss_pred             HHHHHHHHHHcCCC
Q 025173          221 GLSVLIRIHLKFTR  234 (256)
Q Consensus       221 G~~aiqla~~~G~~  234 (256)
                      |++++|+|+..|++
T Consensus       242 G~~avqlak~~Ga~  255 (456)
T 3krt_A          242 GSYATQFALAGGAN  255 (456)
T ss_dssp             HHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHcCCe
Confidence            99999999999998

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.9e-36  Score=272.51  Aligned_cols=169  Identities=19%  Similarity=0.227  Sum_probs=154.8

Q ss_pred             cccccccceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEcc
Q 025173           16 TAGKIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG   93 (256)
Q Consensus        16 ~~~~~~t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG   93 (256)
                      +...|.+||++++.+++.+  ++++++|.|+|++|||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|
T Consensus        15 ~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG   94 (342)
T 4eye_A           15 QTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAP   94 (342)
T ss_dssp             ---CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECC
T ss_pred             cccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEEC
Confidence            4456899999999987776  89999999999999999999999999999999999886556789999999999999999


Q ss_pred             CCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCc
Q 025173           94 GGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH  173 (256)
Q Consensus        94 ~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~  173 (256)
                      ++++ |++||+|++...                              +                   |+|+||++++++.
T Consensus        95 ~~v~-~~vGDrV~~~~~------------------------------~-------------------G~~aey~~v~~~~  124 (342)
T 4eye_A           95 EGSG-IKPGDRVMAFNF------------------------------I-------------------GGYAERVAVAPSN  124 (342)
T ss_dssp             TTSS-CCTTCEEEEECS------------------------------S-------------------CCSBSEEEECGGG
T ss_pred             CCCC-CCCCCEEEEecC------------------------------C-------------------CcceEEEEEcHHH
Confidence            9999 999999986531                              2                   3999999999999


Q ss_pred             EEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          174 VVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       174 ~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++|+++++++||.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       125 ~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~  186 (342)
T 4eye_A          125 ILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAK  186 (342)
T ss_dssp             EEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE
T ss_pred             eEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCE
Confidence            99999999999999999999999999888999999999999998 99999999999999997

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=1.7e-36  Score=273.96  Aligned_cols=168  Identities=20%  Similarity=0.246  Sum_probs=155.6

Q ss_pred             cccccceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173           18 GKIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        18 ~~~~t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      .+|.+||++++++++.+  +++++.|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|++
T Consensus        24 ~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~  103 (353)
T 4dup_A           24 SLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPG  103 (353)
T ss_dssp             CCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTT
T ss_pred             CCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCC
Confidence            46889999999998766  8999999999999999999999999999999999988765668999999999999999999


Q ss_pred             CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEE
Q 025173           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (256)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~  175 (256)
                      |++|++||+|+....                              +                   |+|+||++++++.++
T Consensus       104 v~~~~vGdrV~~~~~------------------------------~-------------------G~~aey~~v~~~~~~  134 (353)
T 4dup_A          104 VSGYAVGDKVCGLAN------------------------------G-------------------GAYAEYCLLPAGQIL  134 (353)
T ss_dssp             CCSCCTTCEEEEECS------------------------------S-------------------CCSBSEEEEEGGGEE
T ss_pred             CCCCCCCCEEEEecC------------------------------C-------------------CceeeEEEEcHHHcE
Confidence            999999999986432                              2                   389999999999999


Q ss_pred             EcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          176 KITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++|+++++++||.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       135 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~  194 (353)
T 4dup_A          135 PFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAE  194 (353)
T ss_dssp             ECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE
T ss_pred             eCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence            999999999999999999999999888899999999999965 99999999999999997

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=2.5e-36  Score=271.33  Aligned_cols=166  Identities=23%  Similarity=0.260  Sum_probs=154.3

Q ss_pred             cccceeEEEecCCCC---cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173           20 IIRCRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v   96 (256)
                      +++||++++++++.+   ++++++|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|++|
T Consensus         2 ~~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v   81 (340)
T 3gms_A            2 SLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFV   81 (340)
T ss_dssp             CCEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTS
T ss_pred             CcccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCC
Confidence            468999999999987   89999999999999999999999999999999999877556789999999999999999999


Q ss_pred             cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (256)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~  176 (256)
                      ++|++||+|+...                              .+|                   +|+||++++++.+++
T Consensus        82 ~~~~vGdrV~~~~------------------------------~~G-------------------~~aey~~v~~~~~~~  112 (340)
T 3gms_A           82 SRELIGKRVLPLR------------------------------GEG-------------------TWQEYVKTSADFVVP  112 (340)
T ss_dssp             CGGGTTCEEEECS------------------------------SSC-------------------SSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEecC------------------------------CCc-------------------cceeEEEcCHHHeEE
Confidence            9999999997532                              123                   999999999999999


Q ss_pred             cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +|+++++++||.+++...|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       113 vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~  171 (340)
T 3gms_A          113 IPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFR  171 (340)
T ss_dssp             CCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCE
T ss_pred             CCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCE
Confidence            99999999999999999999999989999999999999998 69999999999999997

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=9.5e-36  Score=269.30  Aligned_cols=169  Identities=22%  Similarity=0.351  Sum_probs=154.4

Q ss_pred             cccccceeEEEecCCCC---cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccC
Q 025173           18 GKIIRCRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (256)
Q Consensus        18 ~~~~t~ka~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~   94 (256)
                      .+|.+||++++.+++.+   ++++++|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|+
T Consensus        22 ~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~  101 (357)
T 1zsy_A           22 SMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGS  101 (357)
T ss_dssp             CCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECT
T ss_pred             hCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCC
Confidence            46788999999999875   788999999999999999999999999999999998765346899999999999999999


Q ss_pred             CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcE
Q 025173           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (256)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~  174 (256)
                      +|++|++||+|+..+.                             .+                   |+|+||++++++.+
T Consensus       102 ~v~~~~vGdrV~~~~~-----------------------------~~-------------------G~~aey~~v~~~~~  133 (357)
T 1zsy_A          102 NVTGLKPGDWVIPANA-----------------------------GL-------------------GTWRTEAVFSEEAL  133 (357)
T ss_dssp             TCCSCCTTCEEEESSS-----------------------------CS-------------------CCSBSEEEEEGGGE
T ss_pred             CCCCCCCCCEEEEcCC-----------------------------CC-------------------ccceeEEecCHHHc
Confidence            9999999999986421                             02                   39999999999999


Q ss_pred             EEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          175 VKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       175 ~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+||..|++
T Consensus       134 ~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~  194 (357)
T 1zsy_A          134 IQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLR  194 (357)
T ss_dssp             EEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCE
T ss_pred             EECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCE
Confidence            9999999999999999999999999888889999999999998 99999999999999998

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.7e-36  Score=269.12  Aligned_cols=166  Identities=23%  Similarity=0.302  Sum_probs=153.6

Q ss_pred             cccceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173           20 IIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      +|+||++++++++.+  +++++.|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|++|+
T Consensus         1 sm~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (349)
T 4a27_A            1 SMEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVK   80 (349)
T ss_dssp             CCCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCC
T ss_pred             CceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCC
Confidence            368999999999864  899999999999999999999999999999999998766567899999999999999999999


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      +|++||+|+....                              +                   |+|+||+++++++++++
T Consensus        81 ~~~~GdrV~~~~~------------------------------~-------------------G~~aey~~v~~~~~~~i  111 (349)
T 4a27_A           81 GYEIGDRVMAFVN------------------------------Y-------------------NAWAEVVCTPVEFVYKI  111 (349)
T ss_dssp             SCCTTCEEEEECS------------------------------S-------------------CCSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEEecC------------------------------C-------------------CcceEEEEecHHHeEEC
Confidence            9999999986532                              2                   38999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      |+++++++||.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|..
T Consensus       112 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~  169 (349)
T 4a27_A          112 PDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNV  169 (349)
T ss_dssp             CTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCc
Confidence            9999999999999999999999888899999999999998 99999999999999765

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.3e-35  Score=267.20  Aligned_cols=171  Identities=24%  Similarity=0.324  Sum_probs=153.5

Q ss_pred             cccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC-CCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-MAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      |.+||++++.+++++++++++|.|+|+++||||||.+++||++|++.+.|..+. ...+|.++|||++|+|+++|++|++
T Consensus         5 ~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~~   84 (343)
T 3gaz_A            5 TPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDS   84 (343)
T ss_dssp             -CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             chhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCCC
Confidence            678999999999988999999999999999999999999999999999987542 2468999999999999999999999


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      |++||+|+.....                        . ...+|                   +|+||++++++.++++|
T Consensus        85 ~~vGdrV~~~~~g------------------------~-~~~~G-------------------~~aey~~v~~~~~~~~P  120 (343)
T 3gaz_A           85 FRVGDAVFGLTGG------------------------V-GGLQG-------------------THAQFAAVDARLLASKP  120 (343)
T ss_dssp             CCTTCEEEEECCS------------------------S-TTCCC-------------------SSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEEeCC------------------------C-CCCCc-------------------ceeeEEEecHHHeeeCC
Confidence            9999999864311                        0 01233                   99999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++||.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       121 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~  177 (343)
T 3gaz_A          121 AALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGAR  177 (343)
T ss_dssp             TTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCE
Confidence            999999999999999999999878999999999999996 99999999999999997

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=1.5e-35  Score=264.26  Aligned_cols=169  Identities=22%  Similarity=0.232  Sum_probs=150.8

Q ss_pred             cccceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCC--C--CCCCCCeeeeeeeeEEEEEcc
Q 025173           20 IIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ--P--PMAVFPRILGHEAVGVVESVG   93 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~--~--~~~~~p~~~G~e~vG~Vv~vG   93 (256)
                      +++||++++.+++.+  +++++.|.|+|+++||||||.+++||++|++.+.|..  +  ....+|.++|||++|+|+++|
T Consensus         4 m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG   83 (321)
T 3tqh_A            4 MKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELG   83 (321)
T ss_dssp             -CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEEC
T ss_pred             cccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeC
Confidence            467999999998877  8999999999999999999999999999999998831  1  124689999999999999999


Q ss_pred             CCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCc
Q 025173           94 GGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH  173 (256)
Q Consensus        94 ~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~  173 (256)
                      ++|++|++||+|+......                          ..+|                   +|+||++++++.
T Consensus        84 ~~v~~~~~GdrV~~~~~~~--------------------------~~~G-------------------~~aey~~v~~~~  118 (321)
T 3tqh_A           84 SDVNNVNIGDKVMGIAGFP--------------------------DHPC-------------------CYAEYVCASPDT  118 (321)
T ss_dssp             TTCCSCCTTCEEEEECSTT--------------------------TCCC-------------------CSBSEEEECGGG
T ss_pred             CCCCCCCCCCEEEEccCCC--------------------------CCCC-------------------cceEEEEecHHH
Confidence            9999999999998764211                          1123                   999999999999


Q ss_pred             EEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Q 025173          174 VVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFG-LGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       174 ~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G-aG~vG~~aiqla~~~G~~  234 (256)
                      ++++|+++++++||.+++++.|||+++ +.+++++|++|||+| +|++|++++|+||..|++
T Consensus       119 ~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~  179 (321)
T 3tqh_A          119 IIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTT  179 (321)
T ss_dssp             EEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCE
T ss_pred             hccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCE
Confidence            999999999999999999999999988 889999999999998 599999999999999997

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=3e-35  Score=265.88  Aligned_cols=168  Identities=23%  Similarity=0.291  Sum_probs=151.0

Q ss_pred             cccccceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173           18 GKIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        18 ~~~~t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      ..+.+||++++.+++.+  ++++++|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|++
T Consensus        18 ~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~   97 (354)
T 2j8z_A           18 LYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPG   97 (354)
T ss_dssp             ---CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSC
T ss_pred             cchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCC
Confidence            45788999999998864  8889999999999999999999999999999999987654467999999999999999999


Q ss_pred             C-cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcE
Q 025173           96 V-EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (256)
Q Consensus        96 v-~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~  174 (256)
                      | ++|++||+|++...                              +|                   +|+||++++++.+
T Consensus        98 v~~~~~vGdrV~~~~~------------------------------~G-------------------~~aey~~v~~~~~  128 (354)
T 2j8z_A           98 CQGHWKIGDTAMALLP------------------------------GG-------------------GQAQYVTVPEGLL  128 (354)
T ss_dssp             C--CCCTTCEEEEECS------------------------------SC-------------------CSBSEEEEEGGGE
T ss_pred             cCCCCCCCCEEEEecC------------------------------CC-------------------cceeEEEeCHHHc
Confidence            9 99999999986421                              13                   8999999999999


Q ss_pred             EEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          175 VKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       175 ~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       129 ~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~  189 (354)
T 2j8z_A          129 MPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAI  189 (354)
T ss_dssp             EECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE
T ss_pred             EECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCE
Confidence            9999999999999999999999999878899999999999996 99999999999999997

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=5.3e-35  Score=261.93  Aligned_cols=164  Identities=24%  Similarity=0.256  Sum_probs=152.3

Q ss_pred             ccccceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173           19 KIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v   96 (256)
                      .|.+||++++++++.+  +++++.|.|+|++|||||||.+++||++|++.+.|.++.  .+|.++|||++|+|+++|++|
T Consensus         5 ~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~P~i~G~e~~G~V~~vG~~v   82 (334)
T 3qwb_A            5 IPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC--EKPYVLGREASGTVVAKGKGV   82 (334)
T ss_dssp             CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCC--CSSEECCSEEEEEEEEECTTC
T ss_pred             CchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCccccceEEEEEEECCCC
Confidence            5788999999998876  889999999999999999999999999999999998774  689999999999999999999


Q ss_pred             cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEec-CCcEE
Q 025173           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD-VTHVV  175 (256)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~-~~~~~  175 (256)
                      ++|++||+|+...                               +                   |+|+||++++ ++.++
T Consensus        83 ~~~~~GdrV~~~~-------------------------------~-------------------G~~aey~~v~~~~~~~  112 (334)
T 3qwb_A           83 TNFEVGDQVAYIS-------------------------------N-------------------STFAQYSKISSQGPVM  112 (334)
T ss_dssp             CSCCTTCEEEEEC-------------------------------S-------------------SCSBSEEEEETTSSEE
T ss_pred             CCCCCCCEEEEee-------------------------------C-------------------CcceEEEEecCcceEE
Confidence            9999999998542                               1                   3899999999 99999


Q ss_pred             EcCCCCChhh---hhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          176 KITPDIPLDI---ACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       176 ~~p~~l~~~~---aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++|+++++++   ||.+++...|||+++.+..++++|++|||+|+ |++|++++|+|+..|++
T Consensus       113 ~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~  175 (334)
T 3qwb_A          113 KLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAH  175 (334)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCE
T ss_pred             ECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence            9999999999   88888999999999888889999999999995 99999999999999997

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=3.9e-35  Score=261.99  Aligned_cols=164  Identities=22%  Similarity=0.252  Sum_probs=151.9

Q ss_pred             cceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173           22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (256)
Q Consensus        22 t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~   99 (256)
                      |||++++++++++  +++++.|.|+|++|||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|
T Consensus         1 MMkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~e~~G~V~~vG~~v~~~   79 (325)
T 3jyn_A            1 MAKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA-PFLPSGLGAEGAGVVEAVGDEVTRF   79 (325)
T ss_dssp             CEEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             CcEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCCCCCceeEEEEEEECCCCCCC
Confidence            4999999998877  899999999999999999999999999999999998875 5789999999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (256)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~  179 (256)
                      ++||+|+....                             .+|                   +|+||++++++.++++|+
T Consensus        80 ~~GdrV~~~~~-----------------------------~~G-------------------~~aey~~v~~~~~~~~P~  111 (325)
T 3jyn_A           80 KVGDRVAYGTG-----------------------------PLG-------------------AYSEVHVLPEANLVKLAD  111 (325)
T ss_dssp             CTTCEEEESSS-----------------------------SSC-------------------CSBSEEEEEGGGEEECCT
T ss_pred             CCCCEEEEecC-----------------------------CCc-------------------cccceEEecHHHeEECCC
Confidence            99999975321                             123                   999999999999999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++++||.+++...|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       112 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~  167 (325)
T 3jyn_A          112 SVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAK  167 (325)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCE
T ss_pred             CCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCE
Confidence            99999999999999999999888899999999999995 99999999999999997

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=5.1e-35  Score=266.02  Aligned_cols=172  Identities=19%  Similarity=0.175  Sum_probs=148.4

Q ss_pred             ccccccceeEEEecCCCCcEEE-EeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173           17 AGKIIRCRAAISRIPGKPLVME-EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        17 ~~~~~t~ka~~~~~~g~~l~~~-~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      +.+|.+||++++++++. ++++ ++|.|+|+++||||||.+++||++|++.+.+.    ..+|.++|||++|+|+++|++
T Consensus         6 m~~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~----~~~p~v~G~e~~G~V~~vG~~   80 (371)
T 3gqv_A            6 FIPPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF----ATPWAFLGTDYAGTVVAVGSD   80 (371)
T ss_dssp             CCCCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC---------CCTTSCCCSEEEEEEEEECTT
T ss_pred             CCCchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC----CCCCccCccccEEEEEEeCCC
Confidence            44688999999999977 9998 99999999999999999999999999998773    346899999999999999999


Q ss_pred             CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEE
Q 025173           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (256)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~  175 (256)
                      |++|++||+|+..       |..|+.+               ...+|                   +|+||++++++.++
T Consensus        81 v~~~~~GdrV~~~-------~~~~~~~---------------~~~~G-------------------~~aey~~v~~~~~~  119 (371)
T 3gqv_A           81 VTHIQVGDRVYGA-------QNEMCPR---------------TPDQG-------------------AFSQYTVTRGRVWA  119 (371)
T ss_dssp             CCSCCTTCEEEEE-------CCTTCTT---------------CTTCC-------------------SSBSEEECCTTCEE
T ss_pred             CCCCCCCCEEEEe-------ccCCCCC---------------CCCCC-------------------cCcCeEEEchhheE
Confidence            9999999999654       3334322               12334                   99999999999999


Q ss_pred             EcCCCCChhhhhhchhhHHHHHHHHHHh-cCC-----------CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          176 KITPDIPLDIACLLSCGVSTGLGAAWKV-AEV-----------EEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~-~~~-----------~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++|+++++++||++++++.|||+++.+. .++           ++|++|||+|+ |++|++++|+|+..|++
T Consensus       120 ~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~  191 (371)
T 3gqv_A          120 KIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYI  191 (371)
T ss_dssp             ECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCE
T ss_pred             ECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCE
Confidence            9999999999999999999999998777 553           89999999999 99999999999999997

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=3.7e-35  Score=266.28  Aligned_cols=174  Identities=22%  Similarity=0.241  Sum_probs=150.2

Q ss_pred             CCcccccccceeEEEecC---CCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEE
Q 025173           14 SSTAGKIIRCRAAISRIP---GKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV   88 (256)
Q Consensus        14 ~~~~~~~~t~ka~~~~~~---g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~   88 (256)
                      ......+++|||++++++   +.+  ++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+
T Consensus        14 ~~~~~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~   92 (363)
T 4dvj_A           14 GTENLYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPD-GTDWKVIGYDAAGI   92 (363)
T ss_dssp             -----CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC---CCSBCCCCCEEEE
T ss_pred             cchhhhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCC-CCCCCcccceeEEE
Confidence            334445788999999876   333  899999999999999999999999999999999998765 57899999999999


Q ss_pred             EEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEE
Q 025173           89 VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV  168 (256)
Q Consensus        89 Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~  168 (256)
                      |+++|++|++|++||+|+....                           ...+|                   +|+||++
T Consensus        93 V~~vG~~v~~~~vGdrV~~~~~---------------------------~~~~G-------------------~~aey~~  126 (363)
T 4dvj_A           93 VSAVGPDVTLFRPGDEVFYAGS---------------------------IIRPG-------------------TNAEFHL  126 (363)
T ss_dssp             EEEECTTCCSCCTTCEEEECCC---------------------------TTSCC-------------------SCBSEEE
T ss_pred             EEEeCCCCCCCCCCCEEEEccC---------------------------CCCCc-------------------cceEEEE
Confidence            9999999999999999985321                           12234                   9999999


Q ss_pred             ecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCC-----CCCEEEEECC-CHHHHHHHHHHHHc-CCC
Q 025173          169 VDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVE-----EGSTVAIFGL-GAVGLSVLIRIHLK-FTR  234 (256)
Q Consensus       169 v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~-----~g~~VlI~Ga-G~vG~~aiqla~~~-G~~  234 (256)
                      ++++.++++|+++++++||++++++.|||+++.+.++++     +|++|||+|+ |++|++++|+||.+ |++
T Consensus       127 v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~  199 (363)
T 4dvj_A          127 VDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLT  199 (363)
T ss_dssp             EEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSE
T ss_pred             eCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCE
Confidence            999999999999999999999999999999988889998     9999999995 99999999999985 666

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=9.9e-35  Score=262.35  Aligned_cols=167  Identities=23%  Similarity=0.304  Sum_probs=151.2

Q ss_pred             cccceeEEEecCCCC--cEE-EEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173           20 IIRCRAAISRIPGKP--LVM-EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~--l~~-~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v   96 (256)
                      +.+||++++.+++.+  +++ +++|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|++|
T Consensus        27 ~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v  106 (351)
T 1yb5_A           27 QKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNA  106 (351)
T ss_dssp             -CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTC
T ss_pred             cceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCC
Confidence            567999999988765  788 79999999999999999999999999999999775435689999999999999999999


Q ss_pred             cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (256)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~  176 (256)
                      ++|++||+|+....                             .+|                   +|+||++++++.+++
T Consensus       107 ~~~~vGdrV~~~~~-----------------------------~~G-------------------~~aey~~v~~~~~~~  138 (351)
T 1yb5_A          107 SAFKKGDRVFTSST-----------------------------ISG-------------------GYAEYALAADHTVYK  138 (351)
T ss_dssp             TTCCTTCEEEESCC-----------------------------SSC-------------------SSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEEeCC-----------------------------CCC-------------------cceeEEEECHHHeEE
Confidence            99999999975421                             123                   999999999999999


Q ss_pred             cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       139 ~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~  197 (351)
T 1yb5_A          139 LPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLK  197 (351)
T ss_dssp             CCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCE
Confidence            99999999999999999999999877899999999999998 99999999999999997

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=1.1e-34  Score=261.18  Aligned_cols=165  Identities=27%  Similarity=0.305  Sum_probs=148.8

Q ss_pred             ccceeEEEecCC-----CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173           21 IRCRAAISRIPG-----KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        21 ~t~ka~~~~~~g-----~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      |+|||++++++|     ..++++++|.|+|++|||||||.+++||++|++.+.|..   ..+|.++|||++|+|+++|++
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~---~~~p~i~G~e~~G~V~~vG~~   77 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDV---SKAPRVLGFDAIGVVESVGNE   77 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSCC---SSSCBCCCCCEEEEEEEECTT
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCCC---CCCCcCcCCccEEEEEEeCCC
Confidence            579999999876     239999999999999999999999999999999998872   468999999999999999999


Q ss_pred             CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEE
Q 025173           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (256)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~  175 (256)
                      |++|++||+|+....                           ...+|                   +|+||++++++.++
T Consensus        78 v~~~~~GdrV~~~~~---------------------------~~~~G-------------------~~aey~~v~~~~~~  111 (346)
T 3fbg_A           78 VTMFNQGDIVYYSGS---------------------------PDQNG-------------------SNAEYQLINERLVA  111 (346)
T ss_dssp             CCSCCTTCEEEECCC---------------------------TTSCC-------------------SSBSEEEEEGGGEE
T ss_pred             CCcCCCCCEEEEcCC---------------------------CCCCc-------------------ceeEEEEEChHHeE
Confidence            999999999985321                           11233                   99999999999999


Q ss_pred             EcCCCCChhhhhhchhhHHHHHHHHHHhcCCC------CCCEEEEEC-CCHHHHHHHHHHHHcCCC
Q 025173          176 KITPDIPLDIACLLSCGVSTGLGAAWKVAEVE------EGSTVAIFG-LGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~------~g~~VlI~G-aG~vG~~aiqla~~~G~~  234 (256)
                      ++|+++++++||.+++++.|||+++.+.++++      +|++|||+| +|++|++++|+|+..|++
T Consensus       112 ~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~  177 (346)
T 3fbg_A          112 KAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLR  177 (346)
T ss_dssp             ECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCE
T ss_pred             ECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence            99999999999999999999999998899998      999999996 599999999999999997

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=9.6e-35  Score=262.97  Aligned_cols=167  Identities=20%  Similarity=0.222  Sum_probs=150.9

Q ss_pred             cccceeEEEecCCCC---cEEEEeecCCCC--CCeEEEEEeeeecChhhHHhHcCCCCCCCCCC---------eeeeeee
Q 025173           20 IIRCRAAISRIPGKP---LVMEEIEVDPPK--AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFP---------RILGHEA   85 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~---l~~~~~~~p~~~--~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p---------~~~G~e~   85 (256)
                      |++||++++++++.+   ++++++|.|+|+  ++||||||.+++||++|++.+.|.++....+|         .++|||+
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~   80 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence            578999999999875   899999999887  99999999999999999999999776433567         8999999


Q ss_pred             eEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceee
Q 025173           86 VGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTE  165 (256)
Q Consensus        86 vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~ae  165 (256)
                      +|+|+++|++|++|++||+|+..+.                             .+                   |+|+|
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~~-------------------G~~ae  112 (364)
T 1gu7_A           81 LFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------NF-------------------GTWRT  112 (364)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS-----------------------------CC-------------------CCSBS
T ss_pred             EEEEEEeCCCCCcCCCCCEEEecCC-----------------------------CC-------------------Ccchh
Confidence            9999999999999999999985421                             12                   39999


Q ss_pred             eEEecCCcEEEcCC-----------CCChhhhhhchhhHHHHHHHHHHhcCCCCC-CEEEEECC-CHHHHHHHHHHHHcC
Q 025173          166 YTVVDVTHVVKITP-----------DIPLDIACLLSCGVSTGLGAAWKVAEVEEG-STVAIFGL-GAVGLSVLIRIHLKF  232 (256)
Q Consensus       166 y~~v~~~~~~~~p~-----------~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g-~~VlI~Ga-G~vG~~aiqla~~~G  232 (256)
                      |++++++.++++|+           ++++++||++++++.|||+++.+.+++++| ++|||+|+ |++|++++|+||.+|
T Consensus       113 y~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G  192 (364)
T 1gu7_A          113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN  192 (364)
T ss_dssp             EEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT
T ss_pred             eEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCC
Confidence            99999999999998           899999999999999999998776799999 99999998 999999999999999


Q ss_pred             CC
Q 025173          233 TR  234 (256)
Q Consensus       233 ~~  234 (256)
                      ++
T Consensus       193 a~  194 (364)
T 1gu7_A          193 FN  194 (364)
T ss_dssp             CE
T ss_pred             CE
Confidence            97

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=5.9e-35  Score=263.23  Aligned_cols=172  Identities=18%  Similarity=0.173  Sum_probs=145.9

Q ss_pred             CcccccccceeEEEe--cC---CCCcEEEEe---------ecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCee
Q 025173           15 STAGKIIRCRAAISR--IP---GKPLVMEEI---------EVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI   80 (256)
Q Consensus        15 ~~~~~~~t~ka~~~~--~~---g~~l~~~~~---------~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~   80 (256)
                      ++..+|.+||+++++  ++   .+.++++++         |.|+|+++||||||.+++||++|++.+.|.++....+|.+
T Consensus         3 s~m~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v   82 (349)
T 3pi7_A            3 SPMTIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRP   82 (349)
T ss_dssp             --CCCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSB
T ss_pred             CCCCCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCC
Confidence            344568899999999  32   222778888         9999999999999999999999999999987655678999


Q ss_pred             eeeeeeEEEEEccCCC-cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeecccc
Q 025173           81 LGHEAVGVVESVGGGV-EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLN  159 (256)
Q Consensus        81 ~G~e~vG~Vv~vG~~v-~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~  159 (256)
                      +|||++|+|+++|++| ++|++||+|+...                           |...+|                 
T Consensus        83 ~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~---------------------------g~~~~G-----------------  118 (349)
T 3pi7_A           83 AGFEGVGTIVAGGDEPYAKSLVGKRVAFAT---------------------------GLSNWG-----------------  118 (349)
T ss_dssp             CCSEEEEEEEEECSSHHHHHHTTCEEEEEC---------------------------TTSSCC-----------------
T ss_pred             ccceEEEEEEEECCCccCCCCCCCEEEEec---------------------------cCCCCc-----------------
Confidence            9999999999999999 9999999998653                           222334                 


Q ss_pred             ccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCC-CEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          160 VSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEG-STVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       160 ~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g-~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                        +|+||++++++.++++|+++++++||.+++...|||+ +.+.++ ++| ++|||+|+ |++|++++|+|+..|++
T Consensus       119 --~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~-~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~  191 (349)
T 3pi7_A          119 --SWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFR  191 (349)
T ss_dssp             --SSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHH-HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCE
T ss_pred             --cceeeEeechHHeEECCCCCCHHHHhhccccHHHHHH-HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence              9999999999999999999999999999999999996 456666 667 68888865 99999999999999997

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=2.8e-34  Score=255.90  Aligned_cols=167  Identities=19%  Similarity=0.188  Sum_probs=147.8

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      |||+++++++++  ++++++|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            899999999986  88899999999999999999999999999999999887556789999999999999998  57899


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++.+..                        .|...+|                   +|+||++++++.++++|++
T Consensus        79 vGdrV~~~~~~------------------------~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  115 (324)
T 3nx4_A           79 AGQEVLLTGWG------------------------VGENHWG-------------------GLAERARVKGDWLVALPAG  115 (324)
T ss_dssp             TTCEEEEECTT------------------------BTTTBCC-------------------SSBSEEEECGGGCEECCTT
T ss_pred             CCCEEEEcccc------------------------cCCCCCC-------------------ceeeEEecCHHHcEECCCC
Confidence            99999875311                        3333445                   9999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHH--HhcCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAW--KVAEVEEGS-TVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++||.+++.+.|||+++.  .+.++++++ +|||+|+ |++|++++|+||.+|++
T Consensus       116 ~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~  173 (324)
T 3nx4_A          116 LSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQ  173 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCE
Confidence            999999999999999999875  456677643 4999998 99999999999999997

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.1e-34  Score=254.70  Aligned_cols=164  Identities=20%  Similarity=0.238  Sum_probs=147.9

Q ss_pred             cceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173           22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (256)
Q Consensus        22 t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~   99 (256)
                      +||++++++++.+  ++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|
T Consensus         1 ~Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~   79 (327)
T 1qor_A            1 MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHI   79 (327)
T ss_dssp             -CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEECTTCCSC
T ss_pred             CcEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCCCceeEEEEEEECCCCCCC
Confidence            4899999988755  888999999999999999999999999999999997753 4589999999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (256)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~  179 (256)
                      ++||+|. ..    +                        ..+|                   +|+||++++++.++++|+
T Consensus        80 ~~GdrV~-~~----g------------------------~~~G-------------------~~aey~~v~~~~~~~iP~  111 (327)
T 1qor_A           80 KAGDRVV-YA----Q------------------------SALG-------------------AYSSVHNIIADKAAILPA  111 (327)
T ss_dssp             CTTCEEE-ES----C------------------------CSSC-------------------CSBSEEEEEGGGEEECCT
T ss_pred             CCCCEEE-EC----C------------------------CCCc-------------------eeeeEEEecHHHcEECCC
Confidence            9999993 21    0                        0123                   899999999999999999


Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++++++||.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       112 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~  167 (327)
T 1qor_A          112 AISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK  167 (327)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCE
T ss_pred             CCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCE
Confidence            99999999999999999999877899999999999996 99999999999999997

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=257.21  Aligned_cols=170  Identities=24%  Similarity=0.237  Sum_probs=150.1

Q ss_pred             ccccceeEEEecCCCC--cEE-EEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCC--------------CCCCCCee
Q 025173           19 KIIRCRAAISRIPGKP--LVM-EEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQP--------------PMAVFPRI   80 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~--l~~-~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~--------------~~~~~p~~   80 (256)
                      .+++||++++.+++.+  +++ +++|.|+| +++||||||.+++||++|++.+.|..+              ....+|.+
T Consensus        18 ~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~v   97 (375)
T 2vn8_A           18 LYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLT   97 (375)
T ss_dssp             CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSBC
T ss_pred             cCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCcc
Confidence            4678999999998755  788 89999985 999999999999999999999988632              11238999


Q ss_pred             eeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccc
Q 025173           81 LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNV  160 (256)
Q Consensus        81 ~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~  160 (256)
                      +|||++|+|+++|++|++|++||+|++.+..                           ..+|                  
T Consensus        98 ~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~---------------------------~~~G------------------  132 (375)
T 2vn8_A           98 LGRDVSGVVMECGLDVKYFKPGDEVWAAVPP---------------------------WKQG------------------  132 (375)
T ss_dssp             CCCEEEEEEEEECTTCCSCCTTCEEEEECCT---------------------------TSCC------------------
T ss_pred             cceeeeEEEEEeCCCCCCCCCCCEEEEecCC---------------------------CCCc------------------
Confidence            9999999999999999999999999865321                           1223                  


Q ss_pred             cceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcC----CCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          161 SSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAE----VEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       161 g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~----~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                       +|+||++++++.++++|+++++++||++++++.|||+++.+.++    +++|++|||+|+ |++|++++|+|+..|++
T Consensus       133 -~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~  210 (375)
T 2vn8_A          133 -TLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAH  210 (375)
T ss_dssp             -SSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             -cceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCE
Confidence             99999999999999999999999999999999999999877788    999999999996 99999999999999986

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=4.6e-34  Score=255.71  Aligned_cols=165  Identities=24%  Similarity=0.316  Sum_probs=144.3

Q ss_pred             cceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCC-CCC-CCCCeeeeeeeeEEEEEccCCCc
Q 025173           22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ-PPM-AVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        22 t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~~~-~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      +||++++++++.+  +++++.|.|+|+++||||||.+++||++|++.+.|.+ +.. ..+|.++|||++|+|+++|++|+
T Consensus         1 ~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~   80 (333)
T 1wly_A            1 MVMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVT   80 (333)
T ss_dssp             -CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCC
T ss_pred             CcEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCC
Confidence            4899999988755  8889999999999999999999999999999999876 211 35799999999999999999999


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      +|++||+|+....                             .+|                   +|+||++++++.++++
T Consensus        81 ~~~~GdrV~~~~~-----------------------------~~G-------------------~~aey~~v~~~~~~~i  112 (333)
T 1wly_A           81 DFTVGERVCTCLP-----------------------------PLG-------------------AYSQERLYPAEKLIKV  112 (333)
T ss_dssp             SCCTTCEEEECSS-----------------------------SCC-------------------CSBSEEEEEGGGCEEC
T ss_pred             CCCCCCEEEEecC-----------------------------CCC-------------------cceeEEEecHHHcEeC
Confidence            9999999964321                             123                   8999999999999999


Q ss_pred             CCCCChhh--hhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          178 TPDIPLDI--ACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       178 p~~l~~~~--aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      |+++++++  ||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       113 P~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~  172 (333)
T 1wly_A          113 PKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGAT  172 (333)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCE
T ss_pred             CCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCE
Confidence            99999999  99999999999999877889999999999997 99999999999999987

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=8.4e-34  Score=253.57  Aligned_cols=170  Identities=19%  Similarity=0.209  Sum_probs=148.2

Q ss_pred             cccceeEEEecCCC--CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173           20 IIRCRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        20 ~~t~ka~~~~~~g~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      +++||++++++++.  .++++++|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++  +++
T Consensus         2 ~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~   79 (330)
T 1tt7_A            2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDP   79 (330)
T ss_dssp             CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SST
T ss_pred             CCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCC
Confidence            56799999998873  38999999999999999999999999999999999876543468999999999999996  467


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      +|++||+|++....                        .|...+|                   +|+||++++++.++++
T Consensus        80 ~~~vGdrV~~~~~~------------------------~g~~~~G-------------------~~aey~~v~~~~~~~i  116 (330)
T 1tt7_A           80 RFAEGDEVIATSYE------------------------LGVSRDG-------------------GLSEYASVPGDWLVPL  116 (330)
T ss_dssp             TCCTTCEEEEESTT------------------------BTTTBCC-------------------SSBSSEEECGGGEEEC
T ss_pred             CCCCCCEEEEcccc------------------------cCCCCCc-------------------cceeEEEecHHHeEEC
Confidence            89999999865321                        2223344                   9999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHH--HhcCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAW--KVAEVEEGS-TVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      |+++++++||++++++.|||.++.  +++++++|+ +|||+|+ |++|++++|+|+..|++
T Consensus       117 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~  177 (330)
T 1tt7_A          117 PQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYD  177 (330)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCE
Confidence            999999999999999999998765  457889997 9999998 99999999999999997

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-33  Score=251.25  Aligned_cols=169  Identities=18%  Similarity=0.180  Sum_probs=146.7

Q ss_pred             ccceeEEEecCCC--CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           21 IRCRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        21 ~t~ka~~~~~~g~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      .+||++++++++.  .++++++|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|++.  ++++
T Consensus         2 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~   79 (328)
T 1xa0_A            2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPR   79 (328)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSS
T ss_pred             CcceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCC
Confidence            4699999999874  27889999999999999999999999999999998875543468999999999999995  4688


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      |++||+|++....                        .|...+|                   +|+||++++++.++++|
T Consensus        80 ~~vGdrV~~~~~~------------------------~g~~~~G-------------------~~aey~~v~~~~~~~~P  116 (328)
T 1xa0_A           80 FREGDEVIATGYE------------------------IGVTHFG-------------------GYSEYARLHGEWLVPLP  116 (328)
T ss_dssp             CCTTCEEEEESTT------------------------BTTTBCC-------------------SSBSEEEECGGGCEECC
T ss_pred             CCCCCEEEEcccc------------------------CCCCCCc-------------------cceeEEEechHHeEECC
Confidence            9999999865321                        2222334                   99999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHH--HhcCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAW--KVAEVEEGS-TVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++||.+++++.|||.++.  +++++++|+ +|||+|+ |++|++++|+|+..|++
T Consensus       117 ~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~  176 (328)
T 1xa0_A          117 KGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYT  176 (328)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCE
Confidence            99999999999999999998765  457899997 9999998 99999999999999997

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=6.5e-33  Score=251.34  Aligned_cols=164  Identities=17%  Similarity=0.171  Sum_probs=147.4

Q ss_pred             ccccceeEEEecCCCC----cEE-EEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEcc
Q 025173           19 KIIRCRAAISRIPGKP----LVM-EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG   93 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~----l~~-~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG   93 (256)
                      .+.+||++++++++.+    +++ +++|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG   99 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG   99 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred             chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence            4778999999998752    788 99999999999999999999999999999999875435689999999999999999


Q ss_pred             CCCc-ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC
Q 025173           94 GGVE-EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT  172 (256)
Q Consensus        94 ~~v~-~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~  172 (256)
                      ++|+ +|++||+|+...                               +                   |+|+||++++++
T Consensus       100 ~~V~~~~~vGdrV~~~~-------------------------------~-------------------G~~aey~~v~~~  129 (362)
T 2c0c_A          100 LSASARYTVGQAVAYMA-------------------------------P-------------------GSFAEYTVVPAS  129 (362)
T ss_dssp             TTGGGTCCTTCEEEEEC-------------------------------S-------------------CCSBSEEEEEGG
T ss_pred             CCccCCCCCCCEEEEcc-------------------------------C-------------------CcceeEEEEcHH
Confidence            9999 999999998542                               1                   389999999999


Q ss_pred             cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          173 HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       173 ~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .++++|+. + .++|++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       130 ~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~  190 (362)
T 2c0c_A          130 IATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCH  190 (362)
T ss_dssp             GCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCE
T ss_pred             HeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCE
Confidence            99999996 3 4667788899999999888889999999999996 99999999999999997

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.97  E-value=5.1e-32  Score=246.94  Aligned_cols=163  Identities=17%  Similarity=0.185  Sum_probs=142.6

Q ss_pred             cccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCC---------------------------
Q 025173           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP---------------------------   72 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~---------------------------   72 (256)
                      +.+||+++.......++++++|.|+|+++||||||.+++||++|++.+.|.++                           
T Consensus         5 ~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~   84 (379)
T 3iup_A            5 ALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSM   84 (379)
T ss_dssp             EEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHH
T ss_pred             hhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccccc
Confidence            57799998854333499999999999999999999999999999999988631                           


Q ss_pred             -CCCCCCeeeeeeeeEEEEEccCCC-cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCC
Q 025173           73 -PMAVFPRILGHEAVGVVESVGGGV-EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLK  150 (256)
Q Consensus        73 -~~~~~p~~~G~e~vG~Vv~vG~~v-~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~  150 (256)
                       ....+|.++|||++|+|+++|++| ++|++||+|+..+                               +         
T Consensus        85 ~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~-------------------------------~---------  124 (379)
T 3iup_A           85 AGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG-------------------------------G---------  124 (379)
T ss_dssp             GGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC-------------------------------S---------
T ss_pred             ccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC-------------------------------C---------
Confidence             013578999999999999999999 8999999998642                               1         


Q ss_pred             CceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEE--CCCHHHHHHHHHH
Q 025173          151 GEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIF--GLGAVGLSVLIRI  228 (256)
Q Consensus       151 ~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~--GaG~vG~~aiqla  228 (256)
                                |+|+||++++++.++++|+++++++||.+++...|||+++ +... ++|++|||+  |+|++|++++|+|
T Consensus       125 ----------G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~G~vG~~a~q~a  192 (379)
T 3iup_A          125 ----------AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAASNLGQMLNQIC  192 (379)
T ss_dssp             ----------CCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTTSHHHHHHHHHH
T ss_pred             ----------CcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCCCHHHHHHHHHH
Confidence                      3899999999999999999999999999999999999865 5555 899999999  4599999999999


Q ss_pred             HHcCCC
Q 025173          229 HLKFTR  234 (256)
Q Consensus       229 ~~~G~~  234 (256)
                      |..|++
T Consensus       193 ~~~Ga~  198 (379)
T 3iup_A          193 LKDGIK  198 (379)
T ss_dssp             HHHTCC
T ss_pred             HHCCCE
Confidence            999997

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.97  E-value=3.4e-31  Score=237.19  Aligned_cols=158  Identities=22%  Similarity=0.175  Sum_probs=138.6

Q ss_pred             ccceeEEEec--CC----CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeee----eeEEEE
Q 025173           21 IRCRAAISRI--PG----KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHE----AVGVVE   90 (256)
Q Consensus        21 ~t~ka~~~~~--~g----~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e----~vG~Vv   90 (256)
                      ++||+++++.  +|    +.++++++|.|+|+++||||||.+++||++|++.+.+....  .+|.++|||    ++|+|+
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~--~~p~~~G~e~g~~~~G~V~   83 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSY--IPPVGIGEVMRALGVGKVL   83 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCS--SCCCCTTSBCCCEEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccccc--CCCCCCCcccCCceEEEEE
Confidence            6799999985  12    22999999999999999999999999999999988775432  456666666    899999


Q ss_pred             EccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEec
Q 025173           91 SVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD  170 (256)
Q Consensus        91 ~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~  170 (256)
                      +.  ++++|++||+|+..                                                    |+|+||++++
T Consensus        84 ~~--~v~~~~vGdrV~~~----------------------------------------------------G~~aey~~v~  109 (336)
T 4b7c_A           84 VS--KHPGFQAGDYVNGA----------------------------------------------------LGVQDYFIGE  109 (336)
T ss_dssp             EE--CSTTCCTTCEEEEE----------------------------------------------------CCSBSEEEEC
T ss_pred             ec--CCCCCCCCCEEecc----------------------------------------------------CCceEEEEec
Confidence            94  58899999999842                                                    2899999999


Q ss_pred             CCcEEEcCCCCChhhh--hhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          171 VTHVVKITPDIPLDIA--CLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       171 ~~~~~~~p~~l~~~~a--a~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++.++++|+++++.++  |.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       110 ~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~  176 (336)
T 4b7c_A          110 PKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCR  176 (336)
T ss_dssp             CTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE
T ss_pred             hHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence            9999999999987776  7888999999999889999999999999998 99999999999999997

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.97  E-value=4.2e-31  Score=238.61  Aligned_cols=163  Identities=17%  Similarity=0.233  Sum_probs=141.7

Q ss_pred             cccccceeEEE-ecC---CCC----cEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcC----CCCCCCCCCeeeeee
Q 025173           18 GKIIRCRAAIS-RIP---GKP----LVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRS----TQPPMAVFPRILGHE   84 (256)
Q Consensus        18 ~~~~t~ka~~~-~~~---g~~----l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g----~~~~~~~~p~~~G~e   84 (256)
                      .+|++||++++ +.+   |.|    ++++++|.|+| +++||||||.+++||++|++.+.+    .++....+|.++|||
T Consensus         4 ~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E   83 (357)
T 2zb4_A            4 AAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGG   83 (357)
T ss_dssp             --CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEE
T ss_pred             cccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCcccccc
Confidence            45788999999 565   433    99999999999 999999999999999999988776    332224678999999


Q ss_pred             eeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeecccccccee
Q 025173           85 AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFT  164 (256)
Q Consensus        85 ~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a  164 (256)
                      ++|+|++  ++|++|++||+|++..                                                   |+|+
T Consensus        84 ~~G~V~~--~~v~~~~vGdrV~~~~---------------------------------------------------G~~a  110 (357)
T 2zb4_A           84 GIGIIEE--SKHTNLTKGDFVTSFY---------------------------------------------------WPWQ  110 (357)
T ss_dssp             EEEEEEE--ECSTTCCTTCEEEEEE---------------------------------------------------EESB
T ss_pred             EEEEEEe--cCCCCCCCCCEEEecC---------------------------------------------------CCcE
Confidence            9999999  8889999999998542                                                   2899


Q ss_pred             eeEEecCCcEEEcCCCC-----ChhhhhhchhhHHHHHHHHHHhcCCCCC--CEEEEECC-CHHHHHHHHHHHHcCC-C
Q 025173          165 EYTVVDVTHVVKITPDI-----PLDIACLLSCGVSTGLGAAWKVAEVEEG--STVAIFGL-GAVGLSVLIRIHLKFT-R  234 (256)
Q Consensus       165 ey~~v~~~~~~~~p~~l-----~~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~VlI~Ga-G~vG~~aiqla~~~G~-~  234 (256)
                      ||++++++.++++|+++     +++ +|.+++++.|||+++.+.+++++|  ++|||+|+ |++|++++|+|+..|+ +
T Consensus       111 ey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~  188 (357)
T 2zb4_A          111 TKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSR  188 (357)
T ss_dssp             SEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSE
T ss_pred             EEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCe
Confidence            99999999999999999     555 677888999999998889999999  99999998 9999999999999999 5

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.97  E-value=4.7e-31  Score=233.15  Aligned_cols=151  Identities=21%  Similarity=0.236  Sum_probs=137.2

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      ||++++++++.+..+++.|.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+           |
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G   69 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G   69 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence            79999999988656778999999999999999999999999999999776434689999999999997           9


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|+....                              +|                   +|+||++++++.++++|++++
T Consensus        70 drV~~~~~------------------------------~G-------------------~~aey~~v~~~~~~~iP~~~~  100 (302)
T 1iz0_A           70 RRYAALVP------------------------------QG-------------------GLAERVAVPKGALLPLPEGLS  100 (302)
T ss_dssp             EEEEEECS------------------------------SC-------------------CSBSEEEEEGGGCEECCTTCC
T ss_pred             cEEEEecC------------------------------Cc-------------------ceeeEEEEcHHHcEeCCCCCC
Confidence            99986531                              23                   899999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++||.+++++.|||+++.+.+ +++|++|||+|+ |++|++++|+|+..|++
T Consensus       101 ~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~  152 (302)
T 1iz0_A          101 PEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLR  152 (302)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCE
Confidence            9999999999999999987777 999999999998 99999999999999996

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.96  E-value=1.1e-28  Score=220.56  Aligned_cols=158  Identities=22%  Similarity=0.204  Sum_probs=134.6

Q ss_pred             cccccceeEEEecC--CC----CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEE
Q 025173           18 GKIIRCRAAISRIP--GK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVES   91 (256)
Q Consensus        18 ~~~~t~ka~~~~~~--g~----~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~   91 (256)
                      ..+++||++++.+.  |.    .++++++|.|+|++|||||||.+++||+.|.. +..  +  ..+|.++|||++|+|++
T Consensus         3 ~~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~-~~~--~--~~~p~~~g~e~~G~Vv~   77 (333)
T 1v3u_A            3 EFMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRI-ASK--R--LKEGAVMMGQQVARVVE   77 (333)
T ss_dssp             -CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHH-HTT--T--CCTTSBCCCCEEEEEEE
T ss_pred             cccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHcc-ccC--c--CCCCcccccceEEEEEe
Confidence            44678999999874  32    28899999999999999999999999999873 221  1  35788999999999999


Q ss_pred             ccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC
Q 025173           92 VGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (256)
Q Consensus        92 vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~  171 (256)
                      .  ++++|++||+|+..                                                    |+|+||++++.
T Consensus        78 ~--~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~  103 (333)
T 1v3u_A           78 S--KNSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDG  103 (333)
T ss_dssp             E--SCTTSCTTCEEEEC----------------------------------------------------CCSBSEEEESS
T ss_pred             c--CCCCCCCCCEEEec----------------------------------------------------CceEEEEEech
Confidence            4  57899999999742                                                    28999999999


Q ss_pred             CcEEEcCCC----CChhh-hhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          172 THVVKITPD----IPLDI-ACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       172 ~~~~~~p~~----l~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +.++++|++    +++++ +|++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|++
T Consensus       104 ~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~  172 (333)
T 1v3u_A          104 KGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCK  172 (333)
T ss_dssp             TTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCE
T ss_pred             HHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCE
Confidence            999999997    88887 47888999999999888899999999999998 99999999999999997

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.96  E-value=3.6e-29  Score=247.32  Aligned_cols=158  Identities=23%  Similarity=0.281  Sum_probs=141.5

Q ss_pred             ceeEEEecCCCC--cEEEEeec--CCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           23 CRAAISRIPGKP--LVMEEIEV--DPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~--p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      .+.+.+..+|.+  +++++.+.  |+|+++||+|||.++|||++|++++.|.++.    |.++|||++|+|+++|++|++
T Consensus       210 ~~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~~----~~~lG~E~aG~V~~vG~~V~~  285 (795)
T 3slk_A          210 GWRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPG----VASLGSEGAGVVVETGPGVTG  285 (795)
T ss_dssp             SCCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCSS----CCCSCCCEEEEEEEECSSCCS
T ss_pred             eEEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCCC----CccccceeEEEEEEeCCCCCc
Confidence            355666777765  77777764  5689999999999999999999999998653    567999999999999999999


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      |++||+|+....                                                  |+|+||++++.+.++++|
T Consensus       286 ~~vGDrV~~~~~--------------------------------------------------G~~ae~~~v~~~~~~~iP  315 (795)
T 3slk_A          286 LAPGDRVMGMIP--------------------------------------------------KAFGPLAVADHRMVTRIP  315 (795)
T ss_dssp             SCTTCEEEECCS--------------------------------------------------SCSSSEEEEETTSEEECC
T ss_pred             CCCCCEEEEEec--------------------------------------------------CCCcCEEEeehHHEEECC
Confidence            999999975421                                                  289999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++++||.+++++.|||+++.+.+++++||+|||+|+ |++|++++|+||..|++
T Consensus       316 ~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~  372 (795)
T 3slk_A          316 AGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAE  372 (795)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCE
Confidence            999999999999999999999888899999999999997 99999999999999997

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.95  E-value=3.2e-27  Score=211.94  Aligned_cols=161  Identities=20%  Similarity=0.209  Sum_probs=131.1

Q ss_pred             cccceeEEEe-----cCCC-CcEEE--EeecCC-CCCCeEEEEEeeeecChhhHHhHcCCCCCC---CCCCeeeeeeeeE
Q 025173           20 IIRCRAAISR-----IPGK-PLVME--EIEVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQPPM---AVFPRILGHEAVG   87 (256)
Q Consensus        20 ~~t~ka~~~~-----~~g~-~l~~~--~~~~p~-~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~---~~~p~~~G~e~vG   87 (256)
                      |.+||++++.     +++. .++++  +++.|. |++|||||||.++++|+.|. .+.|.+...   ..+|+++|||.+|
T Consensus         2 ~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G   80 (345)
T 2j3h_A            2 TATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQG   80 (345)
T ss_dssp             EEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEE
T ss_pred             CccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeec
Confidence            4456666654     4442 28887  888887 89999999999999998885 455554221   2468999999999


Q ss_pred             EEEE--ccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceee
Q 025173           88 VVES--VGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTE  165 (256)
Q Consensus        88 ~Vv~--vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~ae  165 (256)
                      ++++  +|+.+++|++||+|+..                                                    |+|+|
T Consensus        81 ~~~~GvV~~~v~~~~vGdrV~~~----------------------------------------------------g~~ae  108 (345)
T 2j3h_A           81 YGVSRIIESGHPDYKKGDLLWGI----------------------------------------------------VAWEE  108 (345)
T ss_dssp             EEEEEEEEECSTTCCTTCEEEEE----------------------------------------------------EESBS
T ss_pred             ceEEEEEecCCCCCCCCCEEEee----------------------------------------------------cCcee
Confidence            9999  99999999999999742                                                    28999


Q ss_pred             eEEecCCc--EEEcCC---CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          166 YTVVDVTH--VVKITP---DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       166 y~~v~~~~--~~~~p~---~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      |++++++.  ++++|+   +++++ +|++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus       109 y~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~  182 (345)
T 2j3h_A          109 YSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCY  182 (345)
T ss_dssp             EEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE
T ss_pred             EEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCE
Confidence            99998876  999996   35555 67788899999999878899999999999998 99999999999999987

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.81  E-value=7.9e-20  Score=197.71  Aligned_cols=141  Identities=16%  Similarity=0.102  Sum_probs=120.3

Q ss_pred             cEEEEeecCC-CC--CCeEEEEEeeeecChhhHHhHcCCCCCC------CCCCeeeeeeeeEEEEEccCCCcccCCCCEE
Q 025173           35 LVMEEIEVDP-PK--AGEVRIKILCTSLCHSDVTFWRSTQPPM------AVFPRILGHEAVGVVESVGGGVEEVREGDLV  105 (256)
Q Consensus        35 l~~~~~~~p~-~~--~~eVlVkv~a~~i~~~D~~~~~g~~~~~------~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V  105 (256)
                      +.+.+.+... +.  ++||+|||.++|+|+.|++...|.++..      ...|.++|+|++|+|          ++||+|
T Consensus      1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V----------~vGdrV 1613 (2512)
T 2vz8_A         1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRD----------ASGRRV 1613 (2512)
T ss_dssp             EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEE----------TTSCCE
T ss_pred             eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEE----------ccCCEE
Confidence            5555544332 22  7899999999999999999999976531      124678999999987          279999


Q ss_pred             eeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhh
Q 025173          106 LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI  185 (256)
Q Consensus       106 ~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~  185 (256)
                      ++...                              +                   |+|+||++++++.++++|+++++++
T Consensus      1614 ~g~~~------------------------------~-------------------G~~Aeyv~vp~~~v~~iPd~ls~~e 1644 (2512)
T 2vz8_A         1614 MGMVP------------------------------A-------------------EGLATSVLLLQHATWEVPSTWTLEE 1644 (2512)
T ss_dssp             EEECS------------------------------S-------------------CCSBSEEECCGGGEEECCTTSCHHH
T ss_pred             EEeec------------------------------C-------------------CceeeEEEcccceEEEeCCCCCHHH
Confidence            76432                              1                   2899999999999999999999999


Q ss_pred             hhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          186 ACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       186 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ||.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+||..|++
T Consensus      1645 AA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~ 1694 (2512)
T 2vz8_A         1645 AASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCR 1694 (2512)
T ss_dssp             HTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE
T ss_pred             HHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCE
Confidence            99999999999999888899999999999987 99999999999999997

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.10  E-value=6.7e-11  Score=97.21  Aligned_cols=63  Identities=21%  Similarity=0.243  Sum_probs=48.4

Q ss_pred             CcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          172 THVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +.++++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~   65 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGAR   65 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCE
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCE
Confidence            4678999999999999999999999999877889999999999996 99999999999999987

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.21  E-value=1.9e-06  Score=72.31  Aligned_cols=100  Identities=13%  Similarity=0.030  Sum_probs=63.2

Q ss_pred             cCCCCEEeeec-------ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC
Q 025173           99 VREGDLVLPVF-------QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (256)
Q Consensus        99 ~~vGd~V~~~~-------~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~  171 (256)
                      +++||+|++.+       ...|+.|.+|+.|..++|+....       ..|                   ...+      
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~-------~~G-------------------~~~~------   51 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGK-------PEG-------------------VKIN------   51 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTC-------CTT-------------------EEET------
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCC-------CCC-------------------CEEE------
Confidence            89999999987       66788889998888888865321       112                   3222      


Q ss_pred             CcEEEcCCCCChhhhhhc-----hhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          172 THVVKITPDIPLDIACLL-----SCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       172 ~~~~~~p~~l~~~~aa~l-----~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ..+++.|+.....+.+..     ..... +.. +.....++++++||.+|+| .|.+++++++. +.+
T Consensus        52 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~~  115 (248)
T 2yvl_A           52 GFEVYRPTLEEIILLGFERKTQIIYPKD-SFY-IALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AGE  115 (248)
T ss_dssp             TEEEECCCHHHHHHHTSCCSSCCCCHHH-HHH-HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SSE
T ss_pred             EEEEeCCCHHHHHHhcCcCCCCcccchh-HHH-HHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CCE
Confidence            333333432222211111     11222 223 4567788999999999998 69999999988 544

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.60  E-value=1.1e-07  Score=86.83  Aligned_cols=116  Identities=17%  Similarity=0.134  Sum_probs=83.2

Q ss_pred             eeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccc
Q 025173           79 RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVL  158 (256)
Q Consensus        79 ~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~  158 (256)
                      ...|++.++.|.++|.+++.+.+|+.++.-....                        ++                .-..
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~------------------------~~----------------~~~~  114 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKK------------------------AY----------------DRAA  114 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHH------------------------HH----------------HHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHHH------------------------HH----------------HHHH
Confidence            5689999999999999999999999874211000                        00                0000


Q ss_pred             cccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhc---CCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          159 NVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVA---EVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       159 ~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~---~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ..|++++|+......++.+|+.++.+.++.. .++.++|.++....   .-.+|++|+|+|+|.+|.++++.++..|+.+
T Consensus       115 ~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~  193 (404)
T 1gpj_A          115 RLGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRA  193 (404)
T ss_dssp             HHTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSE
T ss_pred             HcCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCE
Confidence            0126778877777788888888887776553 46667777653222   1257999999999999999999999999853

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.26  E-value=0.034  Score=42.94  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=26.0

Q ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          203 VAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       203 ~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .....++++|+|+|+|.+|+..++.++..|..
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~   44 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHS   44 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCCe
Confidence            34456789999999999999999999999976

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=94.83  E-value=0.019  Score=48.23  Aligned_cols=27  Identities=15%  Similarity=0.101  Sum_probs=22.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLK-FTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~-G~~  234 (256)
                      .++++||.+|+|. |.++.++++.. |..
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~  111 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEIT  111 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTSE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCCe
Confidence            6789999999988 99999999876 444

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=94.83  E-value=0.025  Score=48.05  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=27.0

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Q 025173          200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKF  232 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G  232 (256)
                      +.....+.++++||-+|+|. |.+++.+++..+
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~  135 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVG  135 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTT
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhC
Confidence            45667889999999999987 888899998864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.80  E-value=0.064  Score=49.93  Aligned_cols=43  Identities=19%  Similarity=0.180  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          192 GVSTGLGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       192 ~~~ta~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ...++|+++.+... ..+|++|+|+|.|.+|+.+++.++..|++
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~  299 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGAR  299 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCCE
Confidence            44566776533322 67999999999999999999999999986

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.79  E-value=0.028  Score=50.08  Aligned_cols=26  Identities=23%  Similarity=0.116  Sum_probs=24.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++|+|+|+|++|+++++.++.+|++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~  192 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQ  192 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE
Confidence            48999999999999999999999995

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.72  E-value=0.028  Score=50.90  Aligned_cols=27  Identities=19%  Similarity=0.209  Sum_probs=25.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++|+|+|+|.+|+.++++|+.+|++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~  197 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAI  197 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            589999999999999999999999986

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.34  E-value=0.034  Score=49.99  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=25.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++|+|+|+|.+|+.++++|+.+|++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~  197 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAV  197 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            689999999999999999999999987

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=94.28  E-value=0.13  Score=44.83  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=26.7

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Q 025173          200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFT  233 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~  233 (256)
                      +.....+.+|++||-+|+|. |.+++.+++..|.
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~  129 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGS  129 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCT
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCC
Confidence            34556789999999999977 8888888888764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.17  E-value=0.0099  Score=45.51  Aligned_cols=40  Identities=10%  Similarity=0.102  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          194 STGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       194 ~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +.+++++ +......+++|+|+|+|.+|...++.++..|++
T Consensus         7 sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~~   46 (144)
T 3oj0_A            7 SIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQYK   46 (144)
T ss_dssp             SHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTCE
T ss_pred             cHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence            3444543 333333489999999999999999988887766

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.09  E-value=0.049  Score=48.82  Aligned_cols=27  Identities=19%  Similarity=0.185  Sum_probs=25.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +|++|+|+|+|.+|+.+++.++..|++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~  193 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGAT  193 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence            589999999999999999999999996

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.77  E-value=0.059  Score=48.48  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=25.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++.+|+|+|+|.+|+.++++|+.+|++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~  209 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAK  209 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCE
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCE
Confidence            679999999999999999999999997

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.56  E-value=0.063  Score=48.68  Aligned_cols=27  Identities=15%  Similarity=0.255  Sum_probs=25.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++.+|+|+|+|.+|+.++++|+.+|++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~  215 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAV  215 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCE
Confidence            579999999999999999999999997

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.43  E-value=0.076  Score=47.33  Aligned_cols=27  Identities=22%  Similarity=0.154  Sum_probs=25.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++++|+|+|+|.+|+.+++.++..|++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~  191 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQ  191 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence            468999999999999999999999996

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.82  E-value=0.1  Score=37.54  Aligned_cols=27  Identities=11%  Similarity=0.193  Sum_probs=23.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKF-TR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G-~~  234 (256)
                      .+.+|+|+|+|.+|...++.+...| ..
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~   31 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYS   31 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCce
Confidence            3568999999999999999999998 44

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.65  E-value=0.12  Score=40.77  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCC
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLK-FTR  234 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~-G~~  234 (256)
                      +++|+|+|+|.+|...++.++.. |..
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~   65 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKI   65 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCe
Confidence            67899999999999999999998 887

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=90.81  E-value=0.49  Score=43.19  Aligned_cols=40  Identities=18%  Similarity=0.215  Sum_probs=32.5

Q ss_pred             HHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          195 TGLGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       195 ta~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ..+.++.+... .-.|++|+|+|.|.+|..+++.++..|++
T Consensus       205 s~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~  245 (435)
T 3gvp_A          205 SILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSI  245 (435)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCE
Confidence            34555555444 45899999999999999999999999998

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=90.78  E-value=0.63  Score=38.34  Aligned_cols=32  Identities=19%  Similarity=0.222  Sum_probs=26.8

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Q 025173          200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKF  232 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G  232 (256)
                      +.....++++++||-.|+|. |.++..+++..+
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~  116 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVG  116 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHC
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhC
Confidence            45677889999999999976 888899998854

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=89.91  E-value=0.25  Score=41.45  Aligned_cols=32  Identities=19%  Similarity=0.122  Sum_probs=26.5

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Q 025173          200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKF  232 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G  232 (256)
                      +.....++++++||-+|+| .|.++..+++..+
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~  122 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVG  122 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHC
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhC
Confidence            4466788999999999998 7888889998764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=89.88  E-value=0.68  Score=42.91  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=31.7

Q ss_pred             HHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          196 GLGAAWKVAEV-EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       196 a~~~l~~~~~~-~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .+.++.+.... -.|++++|+|+|++|..+++.++..|++
T Consensus       251 l~dgi~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~  290 (488)
T 3ond_A          251 LPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGAR  290 (488)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHcCCcccCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            34445555554 4799999999999999999999999997

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=89.52  E-value=0.39  Score=39.17  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=23.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.+|||+|+ |.+|...++.+...|++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~   47 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHE   47 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCe
Confidence            4679999998 99999999999888987

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=89.51  E-value=0.3  Score=42.43  Aligned_cols=43  Identities=14%  Similarity=0.255  Sum_probs=33.7

Q ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhh
Q 025173          202 KVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEM  252 (256)
Q Consensus       202 ~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~  252 (256)
                      ..++++++++||.+|+|+.++.++.+|+..|++        ++.++-.+++
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~--------V~gIDis~~~  158 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMR--------VNVVEIEPDI  158 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCE--------EEEEESSHHH
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCCE--------EEEEECCHHH
Confidence            357889999999999998788888888888877        5555555444

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=89.36  E-value=0.69  Score=39.12  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=24.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++.+++|+|+|++|.++++.+...|++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~  144 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCA  144 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCE
Confidence            578999999999999999999999965

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=88.92  E-value=0.44  Score=40.81  Aligned_cols=28  Identities=36%  Similarity=0.547  Sum_probs=26.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      -.|++|+|+|+|.+|..+++.++..|++
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~~  180 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGAK  180 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCE
Confidence            4689999999999999999999999986

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=88.73  E-value=0.9  Score=41.68  Aligned_cols=39  Identities=15%  Similarity=0.184  Sum_probs=32.0

Q ss_pred             HHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          196 GLGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       196 a~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .+.++.+..+ .-.|++|+|+|.|.+|..+++.++..|++
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~  272 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGAR  272 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCCE
Confidence            4455554443 45899999999999999999999999998

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=87.92  E-value=0.55  Score=40.32  Aligned_cols=28  Identities=29%  Similarity=0.439  Sum_probs=25.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      -.|.+|+|+|+|.+|..+++.++..|++
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~  182 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGAN  182 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCE
Confidence            4689999999999999999999999986

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=87.80  E-value=0.99  Score=38.65  Aligned_cols=30  Identities=20%  Similarity=0.199  Sum_probs=25.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHT  236 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~  236 (256)
                      -.+.+++|+|+|++|.+++..+...|+.++
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v  154 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKL  154 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEE
Confidence            457899999999999999998888998643

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=87.68  E-value=0.49  Score=39.78  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=24.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|.++||+|+ +++|...++.+...|++
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~   56 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLG   56 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE
Confidence            4688999998 99999999888888988

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=87.41  E-value=0.64  Score=39.67  Aligned_cols=38  Identities=16%  Similarity=0.302  Sum_probs=30.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY  253 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~  253 (256)
                      +|+++||+|+ +++|.+.++.+...|++        +++.+...+.+
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~--------V~i~~r~~~~l   66 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGAR--------VFITGRRKDVL   66 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE--------EEEEESCHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCE--------EEEEECCHHHH
Confidence            5889999998 89999999999999999        45555544443

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=87.09  E-value=0.66  Score=39.67  Aligned_cols=27  Identities=19%  Similarity=0.348  Sum_probs=24.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|.++||+|+ |++|...++.+...|++
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~   57 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGAR   57 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE
Confidence            5789999998 99999999888889988

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=86.95  E-value=1.8  Score=38.40  Aligned_cols=28  Identities=36%  Similarity=0.307  Sum_probs=26.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      -+|++|.|.|.|.+|+.+++.++..|++
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Gak  200 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGAQ  200 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCE
Confidence            4789999999999999999999999998

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=86.93  E-value=0.73  Score=38.92  Aligned_cols=27  Identities=19%  Similarity=0.206  Sum_probs=24.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|.++||+|+ |++|...++.+...|++
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~   58 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQ   58 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE
Confidence            4789999998 99999999888888988

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=86.88  E-value=0.54  Score=39.21  Aligned_cols=27  Identities=15%  Similarity=0.274  Sum_probs=24.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~   55 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGAR   55 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE
Confidence            5789999998 99999998888888988

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=86.80  E-value=0.77  Score=36.42  Aligned_cols=67  Identities=13%  Similarity=0.247  Sum_probs=37.0

Q ss_pred             ceeeeEE-ecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          162 SFTEYTV-VDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       162 ~~aey~~-v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .|.+|.. .+....+.+++++++.....-. . ......+  ...++++++||-+|+|. |..+..+++. +..
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~-~~~~~~l--~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~   84 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNHQT-T-QLAMLGI--ERAMVKPLTVADVGTGS-GILAIAAHKL-GAK   84 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCHHH-H-HHHHHHH--HHHCSSCCEEEEETCTT-SHHHHHHHHT-TCS
T ss_pred             cccccccCCCCceeEEecCCcccCCCCCcc-H-HHHHHHH--HHhccCCCEEEEECCCC-CHHHHHHHHC-CCC
Confidence            5667766 5667778888777665542211 0 1111111  11257889999999976 7777777764 543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=86.78  E-value=0.54  Score=39.69  Aligned_cols=27  Identities=15%  Similarity=0.240  Sum_probs=23.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~   54 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAH   54 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence            3678999998 99999999988888987

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=86.77  E-value=0.73  Score=38.66  Aligned_cols=27  Identities=15%  Similarity=0.212  Sum_probs=24.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~   58 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLK   58 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE
Confidence            4688999998 99999999988888987

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=86.74  E-value=0.67  Score=41.31  Aligned_cols=28  Identities=25%  Similarity=0.401  Sum_probs=26.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      -.|.+|+|+|.|.+|..+++.+...|++
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Gak  198 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGAK  198 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCCE
Confidence            4789999999999999999999999998

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=86.71  E-value=0.73  Score=38.92  Aligned_cols=27  Identities=7%  Similarity=-0.023  Sum_probs=24.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~   53 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAY   53 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE
Confidence            4789999998 99999999888889998

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=86.69  E-value=1.8  Score=39.51  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=31.3

Q ss_pred             HHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          196 GLGAAWKVAEV-EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       196 a~~~l~~~~~~-~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .+.++.+.... -.|.+|+|+|.|.+|...++.++..|++
T Consensus       197 lldgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~  236 (436)
T 3h9u_A          197 LVDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGAR  236 (436)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHHHCCCE
Confidence            34555444443 3689999999999999999999999997

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=86.44  E-value=1.7  Score=36.89  Aligned_cols=28  Identities=14%  Similarity=0.197  Sum_probs=24.7

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      -+|.++||+|+ |++|..+++.+...|++
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~  145 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE  145 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE
Confidence            36789999995 99999999999889987

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=86.33  E-value=0.79  Score=38.40  Aligned_cols=28  Identities=11%  Similarity=0.100  Sum_probs=24.5

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      -.+.++||+|+ |++|...++.+...|++
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~~   47 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGCS   47 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence            35789999998 99999999988888987

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=86.22  E-value=1.3  Score=38.55  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=27.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCccceecc
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILP  241 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~  241 (256)
                      .|.++||+|+|++|.+++..+...|+..+....+
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR  186 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNR  186 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEEC
Confidence            6889999999999999999999999964333333

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=86.10  E-value=1.1  Score=38.28  Aligned_cols=30  Identities=13%  Similarity=0.174  Sum_probs=25.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTP  237 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~  237 (256)
                      .+.+++|+|+|++|.+++..+...|++.+.
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~  145 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLT  145 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEE
Confidence            578999999999999999999999985433

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=85.92  E-value=0.55  Score=39.34  Aligned_cols=36  Identities=19%  Similarity=0.156  Sum_probs=30.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceee
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLI  244 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v  244 (256)
                      +.+|+|+|+|++|..+++.+...|..++..+.++.|
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            468999999999999999999999976666666654

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=85.82  E-value=2  Score=38.60  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=32.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS  247 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~  247 (256)
                      +..+|+|+|+|..|..+++++..+|+++++.+.++.+...
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~  230 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNE  230 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccC
Confidence            5679999999999999999999999876666666544443

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=85.79  E-value=0.8  Score=38.64  Aligned_cols=28  Identities=18%  Similarity=0.254  Sum_probs=22.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ..++++||+|+ |++|...++.+...|++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~   50 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIA   50 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE
Confidence            35789999998 99999998888888988

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=85.77  E-value=0.86  Score=38.33  Aligned_cols=27  Identities=19%  Similarity=0.325  Sum_probs=24.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~   48 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLR   48 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence            4678999998 99999999988888987

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=85.74  E-value=0.9  Score=38.47  Aligned_cols=27  Identities=11%  Similarity=0.160  Sum_probs=24.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++.++||+|+ +++|...++.+...|++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~   54 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVT   54 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence            4688999998 99999999888888988

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=85.48  E-value=0.69  Score=38.81  Aligned_cols=27  Identities=19%  Similarity=0.301  Sum_probs=24.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|+++||+|+ |++|...++.+...|++
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~   53 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAI   53 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence            4789999998 99999999988889987

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=85.45  E-value=0.94  Score=37.97  Aligned_cols=27  Identities=19%  Similarity=0.276  Sum_probs=24.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~   47 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGAR   47 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCE
Confidence            4788999998 99999999988888987

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=85.39  E-value=0.9  Score=38.29  Aligned_cols=27  Identities=15%  Similarity=0.135  Sum_probs=24.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~   55 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGAR   55 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE
Confidence            4688999998 99999999988888987

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=85.32  E-value=0.95  Score=37.88  Aligned_cols=27  Identities=19%  Similarity=0.192  Sum_probs=24.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~   57 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSK   57 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE
Confidence            4689999998 99999999988888987

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=85.25  E-value=0.61  Score=39.51  Aligned_cols=27  Identities=19%  Similarity=0.171  Sum_probs=22.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|+++||+|+ |++|...++.+...|++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~   59 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYS   59 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE
Confidence            5789999998 99999999888888998

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=85.16  E-value=1.3  Score=37.83  Aligned_cols=26  Identities=12%  Similarity=0.134  Sum_probs=23.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +.+++|+|+|++|.+++..+...|.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~  143 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQ  143 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            88999999999999999999999944

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=85.14  E-value=1.3  Score=38.02  Aligned_cols=29  Identities=17%  Similarity=0.347  Sum_probs=25.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      -.+.+++|+|+|++|.+++..+...|+..
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~  148 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKD  148 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSE
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCE
Confidence            35889999999999999999999999853

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=85.02  E-value=0.88  Score=38.27  Aligned_cols=27  Identities=11%  Similarity=0.059  Sum_probs=24.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|.++||+|+ +++|...++.+...|++
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~   53 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCH   53 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence            4789999998 89999999988888987

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=84.97  E-value=0.86  Score=39.23  Aligned_cols=28  Identities=11%  Similarity=0.302  Sum_probs=24.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      .+.+++|+|+|++|..++..+...|+..
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~  167 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAER  167 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSE
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCE
Confidence            5789999999999999999999999853

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=84.93  E-value=1.2  Score=37.39  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=23.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .+ +++|+|+|++|.+++.-+...|+.
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~  133 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVK  133 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCC
Confidence            46 999999999999999999899985

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=84.88  E-value=1.2  Score=37.62  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=23.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .+.+++|+|+|++|..++..+...|.+
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~~  144 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQN  144 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCE
Confidence            578999999999999998888888855

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=84.72  E-value=1.5  Score=39.44  Aligned_cols=44  Identities=16%  Similarity=0.198  Sum_probs=33.5

Q ss_pred             HhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeE
Q 025173          202 KVAEVE-EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLIL  245 (256)
Q Consensus       202 ~~~~~~-~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~  245 (256)
                      +..+.+ +..+|+|.|+|..|..+++++..+|+++++.+..+.+.
T Consensus       180 ~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli  224 (398)
T 2a9f_A          180 KLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGII  224 (398)
T ss_dssp             HTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             HHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence            444443 45689999999999999999999999766666665544

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=84.68  E-value=0.75  Score=38.71  Aligned_cols=27  Identities=7%  Similarity=0.209  Sum_probs=23.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~   54 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAM   54 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence            4788999998 99999999888888997

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=84.62  E-value=0.76  Score=39.28  Aligned_cols=27  Identities=11%  Similarity=0.091  Sum_probs=24.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|.++||+|+ |++|...++.+...|++
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~   67 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGAN   67 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence            5789999998 99999999988889997

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=84.59  E-value=1.1  Score=37.98  Aligned_cols=27  Identities=15%  Similarity=0.115  Sum_probs=23.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~   52 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQ   52 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE
Confidence            4678999998 99999999888888987

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=84.50  E-value=0.77  Score=38.42  Aligned_cols=27  Identities=19%  Similarity=0.265  Sum_probs=24.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|.++||+|+ +++|...++.+...|++
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~   46 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGAR   46 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence            4788999998 99999999988889998

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=84.46  E-value=1.8  Score=37.58  Aligned_cols=32  Identities=13%  Similarity=0.272  Sum_probs=26.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcccee
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHI  239 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~  239 (256)
                      .+.++||+|+|++|.+++..+...|++.+...
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~  178 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLF  178 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEE
Confidence            57899999999999999999999999644333

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=84.06  E-value=0.85  Score=39.37  Aligned_cols=40  Identities=18%  Similarity=0.049  Sum_probs=32.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS  247 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~  247 (256)
                      ...+|+|+|+|++|..+++.+-..|..+...+..|.|-.+
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~s   74 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELA   74 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC---
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChh
Confidence            3568999999999999999999999987777777765444

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=83.84  E-value=0.74  Score=38.76  Aligned_cols=27  Identities=19%  Similarity=0.241  Sum_probs=24.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|.++||+|+ |++|...++.+...|++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~   52 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGAR   52 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence            4789999998 99999999888889987

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=83.78  E-value=0.82  Score=38.53  Aligned_cols=27  Identities=15%  Similarity=0.086  Sum_probs=23.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~   54 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYG   54 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence            4688999998 99999999888888988

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=83.61  E-value=0.81  Score=38.68  Aligned_cols=27  Identities=22%  Similarity=0.331  Sum_probs=23.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|.++||+|+ |++|...++.+...|++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~   55 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCH   55 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE
Confidence            4788999998 99999998888888988

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=83.55  E-value=0.77  Score=38.73  Aligned_cols=27  Identities=15%  Similarity=0.176  Sum_probs=24.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|+++||+|+ +++|...++.+...|++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~   59 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAH   59 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence            4789999998 99999999988888997

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=83.40  E-value=1.3  Score=36.64  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=23.6

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          209 GSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       209 g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +.++||+|+ |++|...++.+...|++
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~~   48 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSWN   48 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence            678999998 99999999988889988

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=83.37  E-value=1.2  Score=37.82  Aligned_cols=28  Identities=14%  Similarity=0.158  Sum_probs=24.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      .+.+++|+|+|++|.+++..+...|+..
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~  146 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSE  146 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCE
Confidence            5889999999999999998888899753

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=83.25  E-value=2  Score=36.64  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=24.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .+.+++|+|+|++|.+++..+...|+.
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~  151 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPA  151 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCS
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCC
Confidence            688999999999999999888889975

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=83.21  E-value=1.1  Score=33.02  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=23.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++|+|+|+|.+|...++.++..|..
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~   31 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHE   31 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCE
Confidence            56799999999999999999998876

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=82.84  E-value=1.2  Score=39.23  Aligned_cols=39  Identities=15%  Similarity=0.157  Sum_probs=32.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEe
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILM  246 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~  246 (256)
                      .+.+|+|+|+|++|..+++.+-..|..+...+..+.|-.
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~   71 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSY   71 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCT
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEecc
Confidence            467899999999999999999999999777766666443

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=82.59  E-value=2  Score=36.52  Aligned_cols=31  Identities=13%  Similarity=0.220  Sum_probs=26.0

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ....+.+++|+|+|+.+.+++.-+...|+..
T Consensus       115 ~~~~~~~vlvlGaGgaarav~~~L~~~G~~~  145 (271)
T 1npy_A          115 HLNKNAKVIVHGSGGMAKAVVAAFKNSGFEK  145 (271)
T ss_dssp             TCCTTSCEEEECSSTTHHHHHHHHHHTTCCC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCE
Confidence            4446789999999999999998888899864

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=82.32  E-value=1  Score=38.36  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=23.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~   52 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQ   52 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence            4688999998 99999999888888988

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=82.00  E-value=1.7  Score=36.78  Aligned_cols=27  Identities=26%  Similarity=0.295  Sum_probs=24.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|+++||+|+ |++|...++.+...|++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~   73 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGAN   73 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence            4789999998 99999999988889988

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=81.67  E-value=4.2  Score=37.16  Aligned_cols=28  Identities=25%  Similarity=0.186  Sum_probs=26.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      -.|.+|+|.|.|.+|..+++++...|++
T Consensus       233 l~Gk~vaVQG~GnVG~~aa~~L~e~Gak  260 (450)
T 4fcc_A          233 FEGMRVSVSGSGNVAQYAIEKAMEFGAR  260 (450)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             cCCCEEEEeCCChHHHHHHHHHHhcCCe
Confidence            3689999999999999999999999999

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=81.59  E-value=1.6  Score=36.23  Aligned_cols=27  Identities=15%  Similarity=0.144  Sum_probs=23.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~   47 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDK   47 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE
Confidence            3678999998 99999999988888987

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=81.52  E-value=1.1  Score=37.47  Aligned_cols=27  Identities=26%  Similarity=0.432  Sum_probs=24.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|+++||+|+ |++|...++.+...|++
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~   54 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGAR   54 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence            4788999998 99999999888888987

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=81.39  E-value=1.4  Score=35.64  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=22.6

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC
Q 025173          209 GSTVAIFGL-GAVGLSVLIRIHLKFT  233 (256)
Q Consensus       209 g~~VlI~Ga-G~vG~~aiqla~~~G~  233 (256)
                      +.+|||+|+ |.+|...++.+...|+
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~   43 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGL   43 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCC
Confidence            578999998 9999999998888898

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=81.37  E-value=1.4  Score=37.45  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=21.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFT  233 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~  233 (256)
                      .|.++||+|+ +++|...++.+...|+
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~   58 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASN   58 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC
Confidence            3689999998 9999998877777776

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=81.34  E-value=1.2  Score=36.84  Aligned_cols=27  Identities=15%  Similarity=0.236  Sum_probs=23.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.+|||+|+ |++|...++.+...|++
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~   47 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGAS   47 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence            4678999998 99999999888888987

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=81.33  E-value=1.1  Score=37.63  Aligned_cols=36  Identities=19%  Similarity=0.131  Sum_probs=30.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceee
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLI  244 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v  244 (256)
                      +.+|+|+|+|++|..+++.+...|..+...+..+.|
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            468999999999999999999999987666666654

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=81.26  E-value=1.1  Score=37.86  Aligned_cols=27  Identities=19%  Similarity=0.385  Sum_probs=23.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~   49 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYR   49 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCe
Confidence            4678999998 99999999888888987

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=81.21  E-value=1.7  Score=36.68  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=24.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~   51 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGAN   51 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence            4688999998 99999999988889997

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=80.77  E-value=1.3  Score=37.22  Aligned_cols=27  Identities=11%  Similarity=0.209  Sum_probs=23.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~   70 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSH   70 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCE
Confidence            3678999998 99999998888888887

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=80.62  E-value=1.3  Score=36.90  Aligned_cols=27  Identities=26%  Similarity=0.338  Sum_probs=23.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .+.++||+|+ |++|...++.+...|++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~   53 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHR   53 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence            3678999998 99999999888888988

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=80.45  E-value=1.7  Score=31.06  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=19.1

Q ss_pred             eeEEEEEccCCCc---------ccCCCCEEeee
Q 025173           85 AVGVVESVGGGVE---------EVREGDLVLPV  108 (256)
Q Consensus        85 ~vG~Vv~vG~~v~---------~~~vGd~V~~~  108 (256)
                      ..|+|+++|+...         .+++||+|+..
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~   68 (95)
T 3nx6_A           36 TKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYG   68 (95)
T ss_dssp             EEEEEEEECSCEECTTSCEECCSCCTTCEEEEC
T ss_pred             cccEEEEECCCeECCCCCEEccccCCCCEEEEC
Confidence            3699999998643         48999999853

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=80.40  E-value=1.5  Score=36.54  Aligned_cols=27  Identities=19%  Similarity=0.235  Sum_probs=24.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|.++||+|+ |++|...++.+...|++
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~   55 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLK   55 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE
Confidence            5789999998 99999988888888988

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=80.20  E-value=1.6  Score=38.34  Aligned_cols=27  Identities=22%  Similarity=0.317  Sum_probs=24.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|.++||+|+ +++|...++.+...|++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~   71 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGAN   71 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCE
Confidence            5789999998 99999998888888987

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=80.19  E-value=2.5  Score=35.46  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=24.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      .|.++||+|+ |++|...++.+...|++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~   57 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAH   57 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence            4789999998 99999999888888998

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=80.08  E-value=1.3  Score=36.67  Aligned_cols=27  Identities=22%  Similarity=0.313  Sum_probs=23.6

Q ss_pred             CCCEEEEECC-C-HHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-G-AVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G-~vG~~aiqla~~~G~~  234 (256)
                      .++++||+|+ | ++|...++.+...|++
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~   49 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGAD   49 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCE
Confidence            4789999998 7 7999998888888988

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	256
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	5e-43
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	8e-42
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	3e-39
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	1e-38
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	3e-35
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	8e-26
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	8e-24
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	1e-22
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	3e-21
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	7e-21
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	6e-18
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	8e-18
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	2e-16
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	4e-16
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	8e-14
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	4e-13
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	4e-13
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	7e-12
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	2e-11
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	6e-11
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	8e-11
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	1e-09
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	1e-09
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-08
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	5e-08
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	1e-07
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	4e-07
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	1e-06
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	8e-06
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	9e-06
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	6e-05
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	1e-04
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	2e-04
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	4e-04
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	0.002

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  143 bits (360), Expect = 5e-43
 Identities = 78/201 (38%), Positives = 113/201 (56%), Gaps = 2/201 (0%)

Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           +T GK+I+C+AA++    KPLV+EEIEVD P A E+RIKI+ T +CH+D+      +   
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60

Query: 75  AVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
             FP +LGHE  G+VESVG GV E + G+ V+P+F   CGECR C+SPK+N C K    +
Sbjct: 61  -GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANE 119

Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
           +  +      RF     +V+   L  S+F++YTVV+   V KI P + LD        + 
Sbjct: 120 SPDVMSPKETRFTCKGRKVLQF-LGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLE 178

Query: 195 TGLGAAWKVAEVEEGSTVAIF 215
           +   A   +   +   TV   
Sbjct: 179 SVNDAIDLMKHGKCIRTVLSL 199

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  139 bits (351), Expect = 8e-42
 Identities = 86/209 (41%), Positives = 115/209 (55%), Gaps = 13/209 (6%)

Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           TAGK I C+AA++  P KPL +E I V PPKA EVRIKIL + +C SD +  +   P   
Sbjct: 2   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSK- 60

Query: 76  VFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
            FP ILGHEAVGVVES+G GV  V+ GD V+P+F   CG CR CKS  SN C K      
Sbjct: 61  -FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK 119

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
             +  D T+RF   +G+ I+N++  S+FTEYTVV    V KI P I ++           
Sbjct: 120 TGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKL---- 174

Query: 196 GLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
                  + ++ +   +   G G   + +
Sbjct: 175 ------TLDQINKAFELLSSGQGVRSIMI 197

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  133 bits (334), Expect = 3e-39
 Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 10/203 (4%)

Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           T GK+I+C+AAI+   G PL +EEIEV PPKA EVRI+++ T +C +D+          A
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATD--PKKKA 59

Query: 76  VFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF----V 131
           +FP +LGHE  G+VESVG GV   + GD V+P F   C  C+ C SP +N+C K      
Sbjct: 60  LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKY 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
              +Q +  D T+RF   KG  I++ + VSSF++YTVV   ++ ++  +  LD+    + 
Sbjct: 120 PTIDQELMEDRTSRF-TCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHAL 178

Query: 192 GVSTGLGAAWKVAEVEEGSTVAI 214
              +       +  ++EG ++  
Sbjct: 179 PFES---INDAIDLMKEGKSIRT 198

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  131 bits (331), Expect = 1e-38
 Identities = 79/198 (39%), Positives = 113/198 (57%), Gaps = 2/198 (1%)

Query: 17  AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           A ++I+C+AA++   GKPL +EEIEV PPKA EVRIKI+ T++CH+D         P   
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGAD-PEGC 59

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           FP ILGH   G+VESVG GV +++ GD V+P++   CGEC+ C +PK+N+C K      +
Sbjct: 60  FPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 119

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            +  DGT+RF      ++H  +  S+F+EYTVV    V KI P I +D     +      
Sbjct: 120 GLMPDGTSRFTCKGKTILH-YMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEI 178

Query: 197 LGAAWKVAEVEEGSTVAI 214
             A   +   +   TV  
Sbjct: 179 NKAFELMHSGKSIRTVVK 196

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  123 bits (308), Expect = 3e-35
 Identities = 75/204 (36%), Positives = 104/204 (50%), Gaps = 10/204 (4%)

Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T    
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60

Query: 75  AVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
                   HEA G+VES+G GV  VR GD V+P+F   CG+CR CK P+ N C K  +  
Sbjct: 61  LPVIAG--HEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKN-DLS 117

Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLD--IACLLSCG 192
                          +G+ IH+ L  S+F++YTVVD   V KI     LD  I  +L   
Sbjct: 118 MPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFE 177

Query: 193 VSTGLGAAWKVAEVEEGSTVAIFG 216
               +   + +  +  G ++    
Sbjct: 178 ---KINEGFDL--LRSGESIRTIL 196

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 98.1 bits (243), Expect = 8e-26
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 4/192 (2%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
            AA++   G    ++ +++  P+  EV +K++ T +CH+D+       P     P +LGH
Sbjct: 5   IAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP--LPAVLGH 62

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E  G++E++G  V E++ GD V+ +  G CG+C  C +     CS+F  ++      +G 
Sbjct: 63  EGSGIIEAIGPNVTELQVGDHVV-LSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGN 121

Query: 144 NRF-RDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWK 202
           +      +G V  +    SSF  Y +    + VK+T D P D              A   
Sbjct: 122 HALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAIDS 181

Query: 203 VAEVEEGSTVAI 214
              +     + I
Sbjct: 182 RKGITLKPIIKI 193

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 92.3 bits (228), Expect = 8e-24
 Identities = 51/193 (26%), Positives = 75/193 (38%), Gaps = 25/193 (12%)

Query: 23  CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILG 82
            +AA+    G PL +EE++V  P  G+V +KI  + +CH+D+       P     P I G
Sbjct: 6   MKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPG 65

Query: 83  HEAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           HE VG V +VG GV  V+EGD V +P     CG C  C +    +C    N         
Sbjct: 66  HEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGG- 124

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAW 201
                                + EY + D  +V  +  ++   I       ++  L    
Sbjct: 125 ---------------------YAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQM- 162

Query: 202 KVAEVEEGSTVAI 214
             A   EG  V  
Sbjct: 163 -RAGQIEGRIVLE 174

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.5 bits (221), Expect = 1e-22
 Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 21/190 (11%)

Query: 31  PGKPLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
                  ++ + DP      ++ IKI    +C SD+         M   P ++GHE VG 
Sbjct: 15  HEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMK-MPLVVGHEIVGK 73

Query: 89  VESVGGGVEE-VREGD-LVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRF 146
           V  +G      ++ G  + +      C EC  CK+     C+KFV   +Q       ++ 
Sbjct: 74  VVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQG 133

Query: 147 RDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEV 206
                           +  Y  V    VV I  +I ++   +   GV        +  +V
Sbjct: 134 ---------------GYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAF-ERMEKGDV 177

Query: 207 EEGSTVAIFG 216
               T+  + 
Sbjct: 178 RYRFTLVGYD 187

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 85.8 bits (211), Expect = 3e-21
 Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 17/192 (8%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +A  +    +PL   +I    P   +V+I+I    +CHSD+   RS      V+P + GH
Sbjct: 2   KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGT-VYPCVPGH 60

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E VG V +VG  VE+   GDLV +      C  C +C+    N C       N   P + 
Sbjct: 61  EIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEP 120

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP-DIPLDIACLLSCGVSTGLGAAW 201
            +                  +++  VV   +V++I   DI +  A  ++      L    
Sbjct: 121 GHTL--------------GGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGDV 166

Query: 202 KVAEVEEGSTVA 213
           K   V +  T+ 
Sbjct: 167 KYRFVIDNRTLT 178

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 84.9 bits (209), Expect = 7e-21
 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 27/201 (13%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           ++  A +     +PLV +E E+     G + ++IL   +C SDV  +R  + P    P I
Sbjct: 3   LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFR-GEDPRVPLPII 61

Query: 81  LGHEAVGVVESVGGGVEEVREGD-----LVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
           LGHE  G V  V G   ++         L++      CGEC  CK  K        N+  
Sbjct: 62  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCP--NRKV 119

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD-VTHVVKITPDIPLDIACLLSCGVS 194
             + R G + +  L+G           ++ + V+D  T V+K++  I   +   L     
Sbjct: 120 YGINR-GCSEYPHLRG----------CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN- 165

Query: 195 TGLGAAWKVAEVEEGSTVAIF 215
                A ++ E  E   V ++
Sbjct: 166 ----KALELMESREALKVILY 182

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 76.6 bits (187), Expect = 6e-18
 Identities = 48/196 (24%), Positives = 73/196 (37%), Gaps = 31/196 (15%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+     +PL ++E+E      GEV ++I    +CH+D+       P     P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E VG+VE VG GV  ++ GD V +P     CG C  C S +  +C    N          
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVD---- 117

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL--LSCGVSTGLGAA 200
                               + EY      +VVKI  +  +++  L  ++      L   
Sbjct: 118 ------------------GGYAEYCRAAADYVVKIPDNTIIEVQPLEKINEVFDRMLKGQ 159

Query: 201 WKVAEVEEGSTVAIFG 216
                   G  V    
Sbjct: 160 IN------GRVVLTLE 169

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 76.5 bits (187), Expect = 8e-18
 Identities = 46/199 (23%), Positives = 71/199 (35%), Gaps = 32/199 (16%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV------- 76
           RA      GKPL ++EI V  PK  +V IK+    +CHSDV   +     + +       
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
            P  LGHE  G +E VG  V    +GDLV        G C  C+  + ++C    +    
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCD---SPRWL 118

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI-PLDIACLLSCGVST 195
            +  DG                    + EY +V     +     + P+    +     + 
Sbjct: 119 GINFDGA-------------------YAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159

Query: 196 GLGAAWKVAEVEEGSTVAI 214
            +        +  G  V I
Sbjct: 160 AIDNLENFKAI--GRQVLI 176

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 2e-16
 Identities = 31/202 (15%), Positives = 62/202 (30%), Gaps = 28/202 (13%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSD--VTFWRSTQPPMAVFPRIL 81
            + +   PG  L +E   +  P   EV +++    +C SD     +      +   P +L
Sbjct: 9   LSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           GHEA G VE VG  V+ ++ GD V             CK  + N+               
Sbjct: 68  GHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF--------- 118

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAW 201
                            +  +   +   +     K+  ++   +        +     A+
Sbjct: 119 ------------CATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPLEKAL---EAF 163

Query: 202 KVAEVEEGSTVAIFGLGAVGLS 223
           +  +   G  + +        +
Sbjct: 164 ETFKKGLGLKIML-KCDPSDQN 184

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 72.0 bits (175), Expect = 4e-16
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 25/194 (12%)

Query: 25  AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM--AVFPRILG 82
           +A+       L +E+  +  PK  EV +++    +C SDV ++   +        P ++G
Sbjct: 4   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62

Query: 83  HEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           HEA G V  VG  V+ +++GD V       C  C+ CK  K N+C               
Sbjct: 63  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDD--- 119

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWK 202
                              +   Y V       K+  +  +      S  +   +  A++
Sbjct: 120 ------------------GNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVD-AFE 160

Query: 203 VAEVEEGSTVAIFG 216
            A  +  +T+ +  
Sbjct: 161 AARKKADNTIKVMI 174

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 65.5 bits (158), Expect = 8e-14
 Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 27/194 (13%)

Query: 24  RAAISRIPGKPLVMEEIEV-DPPKAGEVRIKILCTSLCHSDVTFWR--STQPPMAVFPRI 80
           +AA      KPL +E+++        +V ++I    +CH+D+   +    +      P  
Sbjct: 1   KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           LGHE VG +E V  GVE + +GD V+       G C  C++ +   C             
Sbjct: 61  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENL---------- 110

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAA 200
                           +     F E+       V+K+  D+ +++       ++  L   
Sbjct: 111 ------------EFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL 158

Query: 201 WKVAEVEEGSTVAI 214
            K   +  G  V I
Sbjct: 159 EKGEVL--GRAVLI 170

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 4e-13
 Identities = 25/48 (52%), Positives = 32/48 (66%)

Query: 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIH 229
           P +  CL+ CG STG GAA K  +V+ GST  +FGLG VGLSV++   
Sbjct: 3   PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCK 50

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 63.4 bits (153), Expect = 4e-13
 Identities = 25/55 (45%), Positives = 32/55 (58%)

Query: 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHT 236
            L+  CL+ CG S+G GAA   A+V  GST A+FGLG VGLS +I   +      
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRI 56

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 60.4 bits (145), Expect = 7e-12
 Identities = 35/201 (17%), Positives = 58/201 (28%), Gaps = 34/201 (16%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +        K L   E E     + +  ++ L  S C SD+               ILGH
Sbjct: 2   KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDR-KNMILGH 59

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           EAVG V  VG  V++ + GD V+           + ++      +  +     S  +DG 
Sbjct: 60  EAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGV 119

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDV--THVVKITPDIPLDIACLLSCGVSTGLGAAW 201
                              F EY  V+    ++  +  D+ L            G     
Sbjct: 120 -------------------FGEYFHVNDADMNLAILPKDVDLSKLVTHVY---HGFDHI- 156

Query: 202 KVAEVEEGSTVAIFGLGAVGL 222
                     + +       L
Sbjct: 157 -------EEALLLMKDKPKDL 170

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHI 239
           PL+  CL+ CG STG G+A KVA+V +GST A+FGLG VGLSV++            +
Sbjct: 2   PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGV 59

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 57.6 bits (138), Expect = 6e-11
 Identities = 23/40 (57%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVG 221
           PL+ +CL+ CG +TG GAA   A+V  GST A+FGLG VG
Sbjct: 2   PLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVG 40

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 57.2 bits (137), Expect = 8e-11
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235
           +P+++   L CG+ TG GA     +V   S+   +G GAVGLS L+   +     
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASI 55

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 41/211 (19%), Positives = 68/211 (32%), Gaps = 29/211 (13%)

Query: 24  RAAISRIPGKPLVMEEIEV-------DPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           R  +    GK + +++I+               V +K++ T++C SD    R        
Sbjct: 3   RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVG 61

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
                 HE  G V   G  VE ++ GDLV   F   CG CR CK   + +C         
Sbjct: 62  LVLG--HEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVC------LTV 113

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV--THVVKITPDIPLDIACLLSCGVS 194
           +  R G        G+            EY +V     +++K+           ++  V 
Sbjct: 114 NPARAGGAYGYVDMGDWTG------GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVG 167

Query: 195 TGLGAAWKVAEVEEGSTVAIFGLGAVGLSVL 225
             + +               F  G     V+
Sbjct: 168 VQVISLDDA-----PRGYGEFDAGVPKKFVI 193

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 53.9 bits (128), Expect = 1e-09
 Identities = 31/55 (56%), Positives = 37/55 (67%)

Query: 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHT 236
           PLD  CLL CGVSTG GAA   A+VE GST A+FGLGAVGL+ ++  H    +  
Sbjct: 2   PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRI 56

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 27/54 (50%), Positives = 35/54 (64%)

Query: 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235
           PLD  CLL CG+STG GAA   A++E GS  A+FGLG VGL+V++   +     
Sbjct: 2   PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASR 55

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 5e-08
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 3/116 (2%)

Query: 24  RAAISRIPGKPLVME---EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           RA      G P V++   +I V  PK  +V IK+    +   +      T     + P  
Sbjct: 4   RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYT 63

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
            G +  GV+E+VG      ++GD V        G      +    +          
Sbjct: 64  PGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPV 119

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHI 239
           +PL+ A +++  ++TG   A ++A++E GS+V + G+GAVGL  +    L+       +
Sbjct: 1   MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGV 58

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 16/65 (24%), Positives = 27/65 (41%)

Query: 24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
          +A + +  G PL + ++     + GEV +++    L  +D              P I G 
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGM 61

Query: 84 EAVGV 88
          E VGV
Sbjct: 62 EVVGV 66

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH 238
           LD+  +  C  +T   A  +  E   G TV I G G +GL  ++        +   
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIV 58

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.6 bits (99), Expect = 8e-06
 Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 4/120 (3%)

Query: 24  RAAISRIPGKPLVME--EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A +              I +D    G+V +++  +S+ + D          +  +P + 
Sbjct: 5   QAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVP 64

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           G +       V       REGD V+              S  + +  +++    + + R 
Sbjct: 65  GID--LAGVVVSSQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLERI 122

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.5 bits (99), Expect = 9e-06
 Identities = 24/207 (11%), Positives = 54/207 (26%), Gaps = 51/207 (24%)

Query: 24  RAAISRIPGKPLVME--EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A  +      + +    I  +      V IK+  + + + D    ++    +  +P IL
Sbjct: 5   QALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLIL 64

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           G +                          G      D +  + +       +   S    
Sbjct: 65  GID------------------------AAGTVVSSNDPRFAEGDEVIATSYELGVSRDG- 99

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAW 201
                                 +EY  V    +V +  ++ L  A +        +    
Sbjct: 100 --------------------GLSEYASVPGDWLVPLPQNLSLKEAMVDQL---LTIVDRE 136

Query: 202 KVAEVEEGSTVAIFGLGAVGLSVLIRI 228
              E   G+   I      G  V++++
Sbjct: 137 VSLEETPGALKDILQNRIQG-RVIVKL 162

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (92), Expect = 6e-05
 Identities = 21/193 (10%), Positives = 43/193 (22%), Gaps = 50/193 (25%)

Query: 24  RAAISRIPGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A +        +   + ++      G+V + +  +SL + D          +  FP I 
Sbjct: 2   QALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIP 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           G +  G V +         +      V     G                           
Sbjct: 62  GIDFAGTVRTSEDPRFHAGQE-----VLLTGWGVG---------------------ENHW 95

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAW 201
           G                      E   V    +V +          L           A 
Sbjct: 96  G-------------------GLAEQARVKGDWLVAMPQGQAAKEISLSEA---PNFAEAI 133

Query: 202 KVAEVEEGSTVAI 214
              +++  + V +
Sbjct: 134 INNQIQGRTLVKV 146

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 184 DIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSV 224
           D+ CL S  + TG   A   A V  GSTV + G G VGL+ 
Sbjct: 3   DLTCL-SDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAA 41

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 20 IIRCRAAISRIPGKP---LVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
          +I  +A +    G+P   L  +  E+D       EV +K L + +  SD+   +   P  
Sbjct: 1  MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 75 AVFPRILGH 83
                 G 
Sbjct: 61 PAKTTGFGT 69

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 3/73 (4%)

Query: 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHIL 240
           IP  +A  L CG  T             G  V I GLG +G   +  +  K      +++
Sbjct: 1   IPSHLAAPLLCGGLTVYS-PLVRNGCGPGKKVGIVGLGGIGS--MGTLISKAMGAETYVI 57

Query: 241 PTLILMSEVQEMY 253
                  E     
Sbjct: 58  SRSSRKREDAMKM 70

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 31 PGKPLVME--EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
           G P V++  E     P   E++++     +   D        PP ++   +    A  V
Sbjct: 9  HGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIV 68

Query: 89 VE 90
           +
Sbjct: 69 SK 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	256
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	100.0
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	100.0
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	100.0
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	100.0
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	100.0
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	100.0
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.97
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.96
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.96
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.94
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.94
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.93
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.72
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.69
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.27
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.26
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.26
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.23
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.22
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.22
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.21
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.19
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.18
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.17
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.16
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.15
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.14
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.13
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.11
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.1
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.1
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.06
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.05
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.03
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.01
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.0
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	98.96
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	98.94
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.93
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	98.92
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	98.85
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.82
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	98.52
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.01
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.72
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.47
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.4
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.02
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.36
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.35
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	91.53
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	91.14
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	90.55
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	90.39
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.22
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	89.89
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	89.37
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	89.36
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	89.12
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	88.94
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	88.69
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	88.57
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	88.53
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	88.07
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	87.82
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	87.31
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.3
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.25
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	86.89
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	85.93
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	85.27
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.09
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	85.0
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	84.98
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	84.57
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	84.49
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	84.21
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	84.17
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	84.15
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	83.33
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	83.02
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	82.22
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	82.0
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	80.86
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	80.23

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=9.4e-40  Score=271.57  Aligned_cols=198  Identities=40%  Similarity=0.640  Sum_probs=175.6

Q ss_pred             cccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173           16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        16 ~~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      +-++++++||+++.+.+.+|+++|++.|+|+++||||||.++|||++|++.+.+.... ..+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~-~~~p~i~GhE~~G~v~~vG~~   80 (199)
T d1cdoa1           2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPG   80 (199)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTT
T ss_pred             CCCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccc-cccccccccccceEEEEEcCC
Confidence            3467899999999999989999999999999999999999999999999999997665 578999999999999999999


Q ss_pred             CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEE
Q 025173           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (256)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~  175 (256)
                      +++|++||+|++.+...|+.|.+|+.+++++|.+.......+...+|..++. .+|..+++..+.|+|+||+++++++++
T Consensus        81 v~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~Ggfaey~~v~~~~~~  159 (199)
T d1cdoa1          81 VTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVA  159 (199)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEE-ETTEEEEEGGGTCCSBSEEEEEGGGEE
T ss_pred             CceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCccccee-eccceeecccccCCceEEEEEchHHEE
Confidence            9999999999999999999999999999999999877655555555533332 355555555556899999999999999


Q ss_pred             EcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEE
Q 025173          176 KITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIF  215 (256)
Q Consensus       176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  215 (256)
                      ++|++++++++|++.+++.|+++++......+.|++|||+
T Consensus       160 ~iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         160 KIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             ECCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            9999999999999999999999999888899999999984

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=3.4e-38  Score=262.54  Aligned_cols=194  Identities=39%  Similarity=0.693  Sum_probs=165.3

Q ss_pred             ccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173           17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (256)
Q Consensus        17 ~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v   96 (256)
                      ..+++||||+++++++++|+++++|.|+|+++||||||.++|||++|++.++|.++.  .+|.++|||++|+|+++|++|
T Consensus         3 ~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~--~~P~v~GHE~~G~V~~vG~~V   80 (202)
T d1e3ia1           3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA--LFPVVLGHECAGIVESVGPGV   80 (202)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCC--CSSBCCCCEEEEEEEEECTTC
T ss_pred             CCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeeccc--ccccccccccceEEeeecCCc
Confidence            467899999999999999999999999999999999999999999999999998875  789999999999999999999


Q ss_pred             cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCC----CCCCCCCCcccccCCCceeeccccccceeeeEEecCC
Q 025173           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN----QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT  172 (256)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~----~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~  172 (256)
                      +++++||+|++.+...|+.|.+|+.+.+++|.+.+....    .+...++..+++ .+|..+++..+.|+|+||+++++.
T Consensus        81 ~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~~G~faey~~v~~~  159 (202)
T d1e3ia1          81 TNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEA  159 (202)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGG
T ss_pred             eeccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccc-cCceeeecccccCCceEEEEEehh
Confidence            999999999999999999999999999999998765311    111122222222 355666666667899999999999


Q ss_pred             cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEEC
Q 025173          173 HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFG  216 (256)
Q Consensus       173 ~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G  216 (256)
                      +++++|++++++.++++.+++.+++.++. .  +++|++|.|+.
T Consensus       160 ~l~~lP~~~~~~~~~~~~~~~~~~~~a~~-~--~k~G~~V~vi~  200 (202)
T d1e3ia1         160 NLARVDDEFDLDLLVTHALPFESINDAID-L--MKEGKSIRTIL  200 (202)
T ss_dssp             GEEECCTTSCGGGGEEEEEEGGGHHHHHH-H--HHTTCCSEEEE
T ss_pred             hEEECCCCCCHHHHHHHHHHHHHHHHHHH-h--CCCCCEEEEEE
Confidence            99999999999988888888888888753 2  47899998864

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=262.62  Aligned_cols=195  Identities=41%  Similarity=0.682  Sum_probs=169.6

Q ss_pred             ccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      ..++|||+++++++++|+++++|.|+|+++||||||+++|||++|+++++|.+.. ..+|.++|||++|+|+++|+.|+.
T Consensus         3 ~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~-~~~p~v~GhE~~G~V~~vG~~V~~   81 (197)
T d2fzwa1           3 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGVTK   81 (197)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCccc-ccccccCCcceeeEEEeecCCcee
Confidence            4688999999999999999999999999999999999999999999999998665 678999999999999999999999


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      +++||+|++.+...|+.|..|+.+.++.|.+.......+...+...+++ .+|..+....+.|+|+||+++++.+++++|
T Consensus        82 ~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~g~GgfAey~vvp~~~~~~vp  160 (197)
T d2fzwa1          82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKID  160 (197)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             cCCCCEEEEccccccccccccccCccccCccccccccccccCCccceec-cCCcceecccccccceeEEEechHHEEECC
Confidence            9999999999999999999999999999998655433444444433332 345555556667899999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEE
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIF  215 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  215 (256)
                      +++++++||.+.+++.|++.++.+...-+.+++|||+
T Consensus       161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999999999987666666789999984

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=1.1e-37  Score=258.11  Aligned_cols=191  Identities=25%  Similarity=0.521  Sum_probs=158.9

Q ss_pred             cccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~   99 (256)
                      +++|+|+++.+.+++|+++++|.|+|+++|||||+.+++||++|++++.|.++.  ++|+++|||++|+|+++|+++++|
T Consensus         1 ~k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~--~~P~i~GHE~~G~V~~vG~~v~~~   78 (194)
T d1f8fa1           1 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV--PLPAVLGHEGSGIIEAIGPNVTEL   78 (194)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             CceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc--cCCcccccceEEEeeecCccceeE
Confidence            357899999999988999999999999999999999999999999999998875  789999999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccC-CCceeeccccccceeeeEEecCCcEEEcC
Q 025173          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDL-KGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~-~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      ++||+|+..+ ..|++|.+|+.+++++|++.......|...+|..++... .+....+..+.|+|+||.+++..+++++|
T Consensus        79 ~vGDrVv~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip  157 (194)
T d1f8fa1          79 QVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVT  157 (194)
T ss_dssp             CTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEEC
T ss_pred             ccCceeeeec-ccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECC
Confidence            9999996654 479999999999999999865544455555664333322 23333344556799999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH  238 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~  238 (256)
                      ++++++++                         +++.|+|++|++|+|+|+.+|+.+++.
T Consensus       158 ~~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iia  192 (194)
T d1f8fa1         158 KDFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIK  192 (194)
T ss_dssp             TTCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEE
T ss_pred             CCCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEE
Confidence            99987654                         445678999999999999999986444

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.8e-37  Score=252.42  Aligned_cols=173  Identities=29%  Similarity=0.447  Sum_probs=157.2

Q ss_pred             ccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      .|.||||+++++++++|+++++|.|.|++|||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|+++++
T Consensus         2 ~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~   81 (175)
T d1llua1           2 LPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTR   81 (175)
T ss_dssp             CCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred             cchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccc
Confidence            58899999999999889999999999999999999999999999999999998766789999999999999999999999


Q ss_pred             cCCCCEEeeec-ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           99 VREGDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        99 ~~vGd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      |++||+|...+ ...|+.|.+|+.+.+++|.+...   .|...+|                   +|+||+++++++++++
T Consensus        82 ~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~---~G~~~~g-------------------g~aey~~v~~~~~~~i  139 (175)
T d1llua1          82 VKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN---TGYSVNG-------------------GYAEYVLADPNYVGIL  139 (175)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEEC
T ss_pred             cccCCEEEeccccccCCccccccCCcccccccccc---ccccccc-------------------ccceEEEechHHEEEC
Confidence            99999998754 45799999999999999999887   6777777                   9999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEE
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIF  215 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  215 (256)
                      |++++++.++.+.+++.|+++++ + +...+|++|||+
T Consensus       140 Pd~l~~~~a~~~~~~~~t~~~~~-~-~g~~~G~~VLVl  175 (175)
T d1llua1         140 PKNVKATIHPGKLDDINQILDQM-R-AGQIEGRIVLEM  175 (175)
T ss_dssp             CTTCCCCEEEECGGGHHHHHHHH-H-TTCCSSEEEEEC
T ss_pred             CCCCChhHHHHHHhHHHHHHHHH-H-hCCCCCCEEEeC
Confidence            99999998888888999998864 4 444579999984

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=1.1e-37  Score=254.57  Aligned_cols=170  Identities=24%  Similarity=0.399  Sum_probs=151.8

Q ss_pred             eEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           25 AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        25 a~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      +++|.++++ |+++++|.|+|+++|||||+++++||++|++.+.+....  ...+|+++|||++|+|+++|+++++|++|
T Consensus         4 aAVl~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~G   82 (178)
T d1e3ja1           4 SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKG   82 (178)
T ss_dssp             EEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTT
T ss_pred             EEEEEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCCC
Confidence            455677887 999999999999999999999999999999999875432  24678999999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|+..+...|+.|+.|..+..++|++....  .+...+|                   +|+||+++++++++++|++++
T Consensus        83 drV~~~~~~~~~~c~~c~~g~~~~c~~~~~~--~~~~~~G-------------------~~aey~~v~~~~~~~iP~~~~  141 (178)
T d1e3ja1          83 DRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC--ATPPDDG-------------------NLARYYVHAADFCHKLPDNCN  141 (178)
T ss_dssp             CEEEECCEECCSSSHHHHTTCGGGCTTCEET--TBTTBCC-------------------SCBSEEEEEGGGEEECCTTCC
T ss_pred             CEEEECcccccCCccccccCCccccccccce--ecccccc-------------------ccceeeeecccceeeCCCCCC
Confidence            9999999999999999999999999887762  2223455                   999999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL  217 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga  217 (256)
                      +++||.+.+.+.|||+++ +.+++++|++|+|+|+
T Consensus       142 ~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         142 VKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             CGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             HHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            999999999999999985 7889999999999975

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=9.7e-37  Score=247.48  Aligned_cols=167  Identities=26%  Similarity=0.405  Sum_probs=153.8

Q ss_pred             eeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           24 RAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        24 ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      ||++++++++||++++++.|++ +++|||||+.+++||++|++.+.|.++.  ...+|+++|||++|+|+++|+++++++
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            7999999999999999999985 6899999999999999999999987643  246899999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|++.+...|+.|..|+.|.+++|.+...   .|...+|                   +|+||+++++++++++|++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  138 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GFAEFMRTSHRSVIKLPKD  138 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEECGGGEEECCTT
T ss_pred             CCCEEEEcCccCCCCccccccccccccccccc---ceeeccc-------------------ccceeeeehhhcceecCCC
Confidence            99999999999999999999999999998876   6767777                   9999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEE
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAI  214 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI  214 (256)
                      ++++.++++.+++.|||+++ +.+.+ .|++|||
T Consensus       139 ~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         139 VRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            99998888889999999986 66777 8999998

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=100.00  E-value=5.5e-37  Score=254.59  Aligned_cols=194  Identities=44%  Similarity=0.700  Sum_probs=163.0

Q ss_pred             ccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173           17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (256)
Q Consensus        17 ~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v   96 (256)
                      ..++.||||+++++++++|+++|+|.|+|+++||||||.|++||++|++++.|.++.  .+|.++|||++|+|+++|+++
T Consensus         3 ~~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~--~~P~i~GHE~~G~Vv~~G~~v   80 (198)
T d1p0fa1           3 AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS--KFPVILGHEAVGVVESIGAGV   80 (198)
T ss_dssp             TTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCCEEEEEEEECTTC
T ss_pred             CCCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc--ccccccceeeeeeeeecCccc
Confidence            356789999999999988999999999999999999999999999999999998875  789999999999999999999


Q ss_pred             cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (256)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~  176 (256)
                      +++++||+|++.+...|+.|.+|+.+.+++|++.......+...++..++. +.+..++.....|+|+||+++++..+++
T Consensus        81 ~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~g~faey~~v~~~~~~k  159 (198)
T d1p0fa1          81 TCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAK  159 (198)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEETTSEEE
T ss_pred             ccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEe-eCCeeccccCCCccceeeEEecHHHEEE
Confidence            999999999999999999999999999999998776544444444444443 4555566666678999999999999999


Q ss_pred             cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHH
Q 025173          177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLS  223 (256)
Q Consensus       177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~  223 (256)
                      +|++++.+.++...+...+.          +++++|||.|+|++|++
T Consensus       160 ip~~~~~~~~~~~~~~~~~v----------~~~~~vlv~G~G~iGl~  196 (198)
T d1p0fa1         160 IDPKINVNFLVSTKLTLDQI----------NKAFELLSSGQGVRSIM  196 (198)
T ss_dssp             ECTTSCGGGGEEEEECGGGH----------HHHHHHTTTSSCSEEEE
T ss_pred             CCCCCCHHHHHHhhcchhhc----------CCCCEEEEECCCcceEE
Confidence            99999988776555444332          33445888888887753

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=5.8e-36  Score=248.28  Aligned_cols=195  Identities=41%  Similarity=0.660  Sum_probs=163.5

Q ss_pred             cccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173           16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        16 ~~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      +..++++|||+++.+++++|++++++.|+|+++||||||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~--~~P~i~GHE~~G~Vv~vG~~   79 (198)
T d2jhfa1           2 TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGEG   79 (198)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECTT
T ss_pred             CCCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc--ccceecccceeEEEEecCcc
Confidence            4578899999999999999999999999999999999999999999999999998876  78999999999999999999


Q ss_pred             CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEE
Q 025173           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (256)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~  175 (256)
                      ++++++||+|++.+...|+.|..|+.+.+++|.+.......+...++...+. +.|..++...+.|+|+||+++++.+++
T Consensus        80 v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~G~fAEy~~v~~~~~~  158 (198)
T d2jhfa1          80 VTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVA  158 (198)
T ss_dssp             CCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEEGGGEE
T ss_pred             ccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCcccccc-ccCceeccCCCCCcccCeEEeCHHHeE
Confidence            9999999999999999999999999999999999877544444444433332 456666666677899999999999999


Q ss_pred             EcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEEC
Q 025173          176 KITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFG  216 (256)
Q Consensus       176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G  216 (256)
                      ++|++++++.++...+++.+...+   ...+++||+|+|+.
T Consensus       159 ~~p~~~~~e~l~~~~~~~~~v~~g---~~~l~~G~~VaVi~  196 (198)
T d2jhfa1         159 KIDAAFALDPLITHVLPFEKINEG---FDLLRSGESIRTIL  196 (198)
T ss_dssp             ECCTTSCCGGGEEEEEEGGGHHHH---HHHHHTTCCSEEEE
T ss_pred             ECCCCCCHHHHHHHHHHHHhhhhC---CceeeCCCEEEEEE
Confidence            999999887766544444433322   23467899998863

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-35  Score=242.44  Aligned_cols=177  Identities=21%  Similarity=0.284  Sum_probs=151.4

Q ss_pred             cccccceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173           18 GKIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        18 ~~~~t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      +.|.|||++++..++..  +++++++.++++++|||||+.|+|||++|++.+.|.++. ..+|+++|||++|+|+++|++
T Consensus         2 ~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~-~~~P~i~GHE~~G~Vv~vG~~   80 (192)
T d1piwa1           2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLGPK   80 (192)
T ss_dssp             CTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEECTT
T ss_pred             CCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCC-CCCCcCcccccccchhhcccc
Confidence            45889999999888765  677777766679999999999999999999999998775 678999999999999999998


Q ss_pred             C-cccCCCCEEeeecc-cCCCCCcccCCCCCCCCCcCccCC----CCCCCCCCCcccccCCCceeeccccccceeeeEEe
Q 025173           96 V-EEVREGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKD----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVV  169 (256)
Q Consensus        96 v-~~~~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v  169 (256)
                      + +.+++||+|...+. ..|+.|.+|+.+.+++|.+.....    ..|...+|                   +|+||+++
T Consensus        81 v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~G-------------------gfaey~~v  141 (192)
T d1piwa1          81 SNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQG-------------------GYANYVRV  141 (192)
T ss_dssp             CCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCC-------------------SSBSEEEE
T ss_pred             cccccCCCCeeeEeeeccCCCCchhhhcCCccccccccccccccccccccccc-------------------ceeeEEEe
Confidence            7 56999999987654 469999999999999999876531    12333444                   99999999


Q ss_pred             cCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEE
Q 025173          170 DVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIF  215 (256)
Q Consensus       170 ~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  215 (256)
                      ++++++++|+++++++|+.+.+.+.|||+++ +++++++|++|||.
T Consensus       142 ~~~~~~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         142 HEHFVVPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             EGGGEEECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             ehHHeEECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            9999999999999988877766678999976 68999999999985

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.5e-35  Score=241.70  Aligned_cols=175  Identities=27%  Similarity=0.468  Sum_probs=145.4

Q ss_pred             ccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc-
Q 025173           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE-   97 (256)
Q Consensus        19 ~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~-   97 (256)
                      |+++|||+++++++++|++++++.|+|+++||||||.++|||++|+++++|.++. .++|+++|||++|+|+++|++|+ 
T Consensus         1 m~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~-~~~P~vlGHE~~G~V~~vG~~v~~   79 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEVNGEKRD   79 (184)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEESSCCBC
T ss_pred             CCceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCc-cccccccceeeeeeeeEEeccccc
Confidence            4678999999999999999999999999999999999999999999999998875 57899999999999999999886 


Q ss_pred             ----ccCCCCEEeeecccCCCCCcccCCCCCC-CCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEec-C
Q 025173           98 ----EVREGDLVLPVFQGDCGECRDCKSPKSN-ICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD-V  171 (256)
Q Consensus        98 ----~~~vGd~V~~~~~~~c~~c~~~~~g~~~-~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~-~  171 (256)
                          .+++||+|+..+..+|+.|.+|+.|.++ .|++...   .|....- ..++..          .|+|+||++++ +
T Consensus        80 ~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~---~G~~~~~-~~~~~~----------~Gg~ae~~~v~~~  145 (184)
T d1vj0a1          80 LNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGC-SEYPHL----------RGCYSSHIVLDPE  145 (184)
T ss_dssp             TTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCS-SSTTCC----------CSSSBSEEEECTT
T ss_pred             cccccccceeeeEeccccccccChhHhCccccccCCCcee---eccCCCC-CCCCCc----------ceeCcCcEEechh
Confidence                4689999999999999999999999865 5888765   3322100 001101          13999999995 5


Q ss_pred             CcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEE
Q 025173          172 THVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIF  215 (256)
Q Consensus       172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  215 (256)
                      .+++++|++++.++      ++++|++++ +++++++|++|||+
T Consensus       146 ~~v~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         146 TDVLKVSEKITHRL------PLKEANKAL-ELMESREALKVILY  182 (184)
T ss_dssp             CCEEEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEE
T ss_pred             HcEEECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEe
Confidence            79999999999763      234567764 78899999999997

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=242.51  Aligned_cols=171  Identities=22%  Similarity=0.367  Sum_probs=148.8

Q ss_pred             cceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCccc
Q 025173           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEV   99 (256)
Q Consensus        22 t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~   99 (256)
                      .++|++++++++ |+++++|.|+|+++||||||.+++||++|++.+.+....  ...+|.++|||++|+|+++|+++++|
T Consensus         7 ~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~   85 (185)
T d1pl8a1           7 NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHL   85 (185)
T ss_dssp             CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSC
T ss_pred             CCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeee
Confidence            577999999988 999999999999999999999999999999998864321  24679999999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-CCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      ++||+|+..+...|+.|++|+.|++++|.+...   .|. ..+|                   +|+||++++.++++++|
T Consensus        86 ~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~---~g~~~~~G-------------------~~aey~~~~~~~~~~lP  143 (185)
T d1pl8a1          86 KPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDDG-------------------NLCRFYKHNAAFCYKLP  143 (185)
T ss_dssp             CTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBCC-------------------SCBSEEEEEGGGEEECC
T ss_pred             cccccceecceeccccchhhccchhchhcccee---eecccccc-------------------cceEEEEEchHHEEECC
Confidence            999999999999999999999999999998876   343 3344                   89999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCH
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGA  219 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~  219 (256)
                      +++++++|+.++  +.+|+++ ++..++++|++||| |+|+
T Consensus       144 ~~~~~~~aa~~p--l~~a~~a-~~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         144 DNVKPLVTHRFP--LEKALEA-FETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             TTCGGGEEEEEE--GGGHHHH-HHHHHTTCCSEEEE-ECCT
T ss_pred             CCCCHHHHHHHH--HHHHHHH-HHHhCCCCCCEEEE-EeCC
Confidence            999999987654  4556775 36778899999998 6654

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.1e-34  Score=236.21  Aligned_cols=168  Identities=28%  Similarity=0.389  Sum_probs=144.8

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC-------CCCCCeeeeeeeeEEEEEccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-------MAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-------~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      |||++++++|++|++++++.|+|++||||||+.+++||++|++++.|.++.       ...+|+++|||++|+|+++|+.
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            899999999999999999999999999999999999999999999987532       2468999999999999999999


Q ss_pred             CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCc-E
Q 025173           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH-V  174 (256)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~-~  174 (256)
                      +++|++||+|++.+...|+.|.+|+.+++++|++...   .|...+|                   +|+||+++++.+ +
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~vp~~~~~  138 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCcce---eeecccc-------------------ccccEEEEEhHHeE
Confidence            9999999999999999999999999999999999877   6777777                   999999997655 5


Q ss_pred             EEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEE
Q 025173          175 VKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAI  214 (256)
Q Consensus       175 ~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI  214 (256)
                      +++|+..+.+.|+....++.++++++ ..+++ .|++|||
T Consensus       139 ~~~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         139 YKLRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             EECSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             EECCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            56655444444444456888999875 56666 5899998

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=100.00  E-value=8.5e-37  Score=249.11  Aligned_cols=171  Identities=20%  Similarity=0.123  Sum_probs=143.4

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      ||++++.++++ ++++|+|.|+|+++|||||++++|||++|++.+.+.... ..+|+++|||++|+|+++|+++++|++|
T Consensus         1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~-~~~P~i~GhE~~G~V~~vG~~v~~~~vG   78 (177)
T d1jqba1           1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALG-DRKNMILGHEAVGEVVEVGSEVKDFKPG   78 (177)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTC-CCSSEECCCCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCC-CCCCccCcceeeEEeeecccccceecCC
Confidence            89999999998 999999999999999999999999999999887654443 4789999999999999999999999999


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC--CcEEEcCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV--THVVKITPD  180 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~--~~~~~~p~~  180 (256)
                      |||+..+..+|+.|.+|+.+.+++|.+......+|...+|                   +|+||++++.  .+++++|++
T Consensus        79 drV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G-------------------~~aEy~~vp~a~~~l~~iP~~  139 (177)
T d1jqba1          79 DRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDG-------------------VFGEYFHVNDADMNLAILPKD  139 (177)
T ss_dssp             CEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCC-------------------SSBSSEEESSHHHHCEECCTT
T ss_pred             CcEEEeeeeccccccchhhhhhcccccccccccccCCCCh-------------------hcCeeEEEEhhhCeEEECCCC
Confidence            9999999999999999999999999887654445555566                   9999999985  478999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHH
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVL  225 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~ai  225 (256)
                      +++++++...+...++   +        ++.++|+|+|++|++++
T Consensus       140 ~~~~~~~~~~~~~~~~---~--------~~~vlv~g~gp~gl~aa  173 (177)
T d1jqba1         140 VDLSKLVTHVYHGFDH---I--------EEALLLMKDKPKDLIKA  173 (177)
T ss_dssp             SCGGGGEEEEEESGGG---H--------HHHHHHHHHCCTTCSEE
T ss_pred             cchHHHHHHHHHHHHH---h--------cCceEEECCCHHHhhee
Confidence            9998877654332222   1        23477778887776543

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.2e-34  Score=233.08  Aligned_cols=169  Identities=28%  Similarity=0.477  Sum_probs=147.9

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      |||+++++++++|+++++|.|+|++|||||||++++||++|++.+.+.+.....+|.++|||++|+|+++|+.++++++|
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG   80 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence            89999999998899999999999999999999999999999999988766557889999999999999999999999999


Q ss_pred             CEEeeec-ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          103 DLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       103 d~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      |+|+..+ ...|+.|..|+.+.++.|.+...   .|...+|                   +|+||+++++++++++|+++
T Consensus        81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~~  138 (171)
T d1rjwa1          81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDNT  138 (171)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTTC
T ss_pred             eEEeeccccccccccccccCCCccccccccc---cceeccC-------------------ccccceEecHHHEEECCCCC
Confidence            9998655 45688999999999999999877   6766777                   99999999999999999999


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL  217 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga  217 (256)
                      +++.|+ +. .+.++++++ ..+.+ +|++|||+|.
T Consensus       139 ~~e~A~-l~-~~~~~~~~~-~~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         139 IIEVQP-LE-KINEVFDRM-LKGQI-NGRVVLTLED  170 (171)
T ss_dssp             CEEEEE-GG-GHHHHHHHH-HTTCC-SSEEEEECCC
T ss_pred             CHHHHH-HH-HHHHHHHHH-HhcCC-CCCEEEEeCC
Confidence            987665 44 456677755 34555 5999999984

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=2.7e-37  Score=256.94  Aligned_cols=191  Identities=23%  Similarity=0.287  Sum_probs=154.8

Q ss_pred             ceeEEEecCCCCcEEEEeecCCC-------CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPP-------KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~-------~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~   95 (256)
                      +||++|+++++ ++++|++.|++       +++||||||.+++||++|++.+.|.++.  .+|+++|||++|+|+++|++
T Consensus         2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~--~~P~v~GHE~~G~Vv~vG~~   78 (201)
T d1kola1           2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA--QVGLVLGHEITGEVIEKGRD   78 (201)
T ss_dssp             EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC--CTTCBCCCCEEEEEEEECTT
T ss_pred             cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCccc--ccceeccceeeeeeeccccc
Confidence            69999999998 99999999865       4699999999999999999999998875  78999999999999999999


Q ss_pred             CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC--Cc
Q 025173           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV--TH  173 (256)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~--~~  173 (256)
                      |++|++||||++.+..+|+.|++|+.++++.|.+.......+..  |......+          -|+|+||+++|.  .+
T Consensus        79 V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~--g~~~~~~~----------~Gg~aeyv~vp~~~~~  146 (201)
T d1kola1          79 VENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAY--GYVDMGDW----------TGGQAEYVLVPYADFN  146 (201)
T ss_dssp             CCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEB--TCTTSCCB----------CCCSBSEEEESSHHHH
T ss_pred             cccccccceeEEeeeeeccCChhhhCCCcccccccccccccccc--cccCCCcc----------ccccccEEEeehHHCe
Confidence            99999999999999999999999999999999775432111110  00000011          149999999975  47


Q ss_pred             EEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Q 025173          174 VVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFT  233 (256)
Q Consensus       174 ~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~  233 (256)
                      ++++|++.++.+++++...+.++++++ +..+.+.++    +|+|++|++++|+||.+|+
T Consensus       147 l~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g~----~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         147 LLKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYGE----FDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             CEECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHHH----HHHTCSCEEEECTTCSSCC
T ss_pred             EEECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCeE----EeeCHHHHHHHHHHHHcCC
Confidence            999999877777777777777777764 444444443    5899999999999999886

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=5.3e-32  Score=220.91  Aligned_cols=166  Identities=26%  Similarity=0.386  Sum_probs=133.6

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      |||++..++++||++++++.|+|++||||||+.++|||++|++.+.|.++. ..+|+++|||++|+|+++|++|+++++|
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~-~~~P~i~GhE~~G~V~~vG~~V~~~~vG   79 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAVGDQVEKYAPG   79 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeecc-ccccccccccccccchhhccccccCCCC
Confidence            899999999999999999999999999999999999999999999998766 6789999999999999999999999999


Q ss_pred             CEEeeec-ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          103 DLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       103 d~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      |+|...+ ...|+.|++|+.+.+++|++............+              ....|+|+||+++++++++++|++.
T Consensus        80 drV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~--------------~~~~GgfaEy~~v~~~~~~~ip~~~  145 (179)
T d1uufa1          80 DLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEP--------------GHTLGGYSQQIVVHERYVLRIRVAD  145 (179)
T ss_dssp             CEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTT--------------SBCCCSSBSEEEEEGGGCEECCCCC
T ss_pred             CEEEEcccccccCccccccCcccccCCCccccccccCCCCC--------------cccccccceEEEechHHEEECCCCC
Confidence            9997655 458999999999999999987543111111101              0112499999999999999999665


Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCC
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVE  207 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~  207 (256)
                      ....++   ..+.++++++ .++.++
T Consensus       146 ~~~~~a---~~l~~a~~a~-~~a~v~  167 (179)
T d1uufa1         146 IEMIRA---DQINEAYERM-LRGDVK  167 (179)
T ss_dssp             EEEECG---GGHHHHHHHH-HTTCSS
T ss_pred             cChhHh---chhHHHHHHH-HHhCcc
Confidence            433222   2556777765 445544

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-31  Score=210.28  Aligned_cols=146  Identities=20%  Similarity=0.261  Sum_probs=132.7

Q ss_pred             cceeEEEecCCCC--cEEE-EeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           22 RCRAAISRIPGKP--LVME-EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        22 t~ka~~~~~~g~~--l~~~-~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      +|||++++++|.+  ++++ ++|.|+|++|||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|+++++
T Consensus         2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (150)
T d1yb5a1           2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA   81 (150)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred             ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence            6999999998877  7764 689999999999999999999999999999988776788999999999999999999999


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      |++||+|+....                             .+                   |+|+||+++++++++++|
T Consensus        82 ~~vGdrV~~~~~-----------------------------~~-------------------G~~ae~~~v~~~~~~~iP  113 (150)
T d1yb5a1          82 FKKGDRVFTSST-----------------------------IS-------------------GGYAEYALAADHTVYKLP  113 (150)
T ss_dssp             CCTTCEEEESCC-----------------------------SS-------------------CSSBSEEEEEGGGEEECC
T ss_pred             cccCcccccccc-----------------------------cc-------------------cccccccccccccccccc
Confidence            999999975432                             12                   399999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEE
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIF  215 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  215 (256)
                      +++++++||+++++..|+|+++...+....|+++||+
T Consensus       114 ~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         114 EKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             CCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            9999999999999999999999999999999999984

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=4.3e-30  Score=204.15  Aligned_cols=150  Identities=19%  Similarity=0.203  Sum_probs=129.9

Q ss_pred             cccceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173           20 IIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~   97 (256)
                      +.+|||+++++++++  +++++++.|+|++|||||||.|+|||++|++.+.|.++....+|+++|+|++|+|++  ..+.
T Consensus         1 m~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~   78 (152)
T d1xa0a1           1 MSAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHP   78 (152)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSS
T ss_pred             CCceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCC
Confidence            457999999999887  557899999999999999999999999999999998876678899999999999999  5567


Q ss_pred             ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (256)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~  177 (256)
                      .|++||+|+.....                        .+...+|                   +|+||+++++++++++
T Consensus        79 ~~~~g~~v~~~~~~------------------------~~~~~~G-------------------~~aEy~~v~~~~~~~i  115 (152)
T d1xa0a1          79 RFREGDEVIATGYE------------------------IGVTHFG-------------------GYSEYARLHGEWLVPL  115 (152)
T ss_dssp             SCCTTCEEEEESTT------------------------BTTTBCC-------------------SSBSEEEECGGGCEEC
T ss_pred             ccccCCEEEEecCc------------------------cccccCC-------------------CcceeeeehhhccccC
Confidence            89999999865321                        3333445                   9999999999999999


Q ss_pred             CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEEC
Q 025173          178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFG  216 (256)
Q Consensus       178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G  216 (256)
                      |++++ ++||+++++..||+.++..+.+++ |++|||+|
T Consensus       116 P~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         116 PKGLE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             CTTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CCCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            99998 578888889999998888888886 99999975

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.4e-29  Score=196.39  Aligned_cols=131  Identities=19%  Similarity=0.223  Sum_probs=118.9

Q ss_pred             ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (256)
Q Consensus        23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG  102 (256)
                      |||+++++.|+++++++++.|+|+++|||||+.+++||++|++.+.|.++....+|+++|||++|+|           +|
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG   69 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG   69 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence            8999999999889999999999999999999999999999999999998776789999999999999           39


Q ss_pred             CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (256)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~  182 (256)
                      |+|+....                              +                   |+|+||+++++++++++|++++
T Consensus        70 d~V~~~~~------------------------------~-------------------G~~aey~~v~~~~~~~~P~~~~  100 (131)
T d1iz0a1          70 RRYAALVP------------------------------Q-------------------GGLAERVAVPKGALLPLPEGRP  100 (131)
T ss_dssp             EEEEEECS------------------------------S-------------------CCSBSEEEEEGGGCEECCTTCC
T ss_pred             ceEEEEec------------------------------c-------------------CccceeeeeCHHHeEEccCCCC
Confidence            99976532                              2                   3999999999999999999999


Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEE
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIF  215 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  215 (256)
                      +++||.+++.+.|||+++.+++  +.|++||+.
T Consensus       101 ~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1         101 VVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             CEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            9999999999999999987665  559999873

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.9e-29  Score=196.01  Aligned_cols=141  Identities=21%  Similarity=0.295  Sum_probs=122.7

Q ss_pred             eeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173           24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (256)
Q Consensus        24 ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v  101 (256)
                      +.++|+++|.|  |++++.+.|+|++|||||||.|++||++|++++.|.++. ..+|.++|||++|+|+++|+++++|++
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~v   80 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHIKA   80 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEECTTCCSCCT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCC-Ccceeeeccccccceeeeeeecccccc
Confidence            46789999988  899999999999999999999999999999999999876 678999999999999999999999999


Q ss_pred             CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (256)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l  181 (256)
                      ||+|+....                             ..                   |+|+||+.++.+.++++|+++
T Consensus        81 GdrV~~~~~-----------------------------~~-------------------G~~ae~~~v~~~~~~~~P~~~  112 (147)
T d1qora1          81 GDRVVYAQS-----------------------------AL-------------------GAYSSVHNIIADKAAILPAAI  112 (147)
T ss_dssp             TCEEEESCC-----------------------------SS-------------------CCSBSEEEEEGGGEEECCTTS
T ss_pred             cceeeeecc-----------------------------cc-------------------ccceeEEEEehHHeEEcCccc
Confidence            999963211                             11                   389999999999999999999


Q ss_pred             Chhhh--hhchhhHHHHHHHHHHhcCCCCCCEEEE
Q 025173          182 PLDIA--CLLSCGVSTGLGAAWKVAEVEEGSTVAI  214 (256)
Q Consensus       182 ~~~~a--a~l~~~~~ta~~~l~~~~~~~~g~~VlI  214 (256)
                      ++++|  +.+++...|+++++. ..++++|++|||
T Consensus       113 ~~~~a~a~~~~~~~~~~~~~l~-~~~~~~G~~VLI  146 (147)
T d1qora1         113 KVDVAEQQKYPLKDAQRAHEIL-ESRATQGSSLLI  146 (147)
T ss_dssp             CCCCCGGGEEEGGGHHHHHHHH-HTTCCCBCCEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEe
Confidence            88754  455677778888765 468999999998

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=9.1e-27  Score=183.59  Aligned_cols=137  Identities=15%  Similarity=0.121  Sum_probs=116.4

Q ss_pred             ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (256)
Q Consensus        23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  100 (256)
                      |||+++.+++++  +++++++.|+|++|||||||.|++||++|++.+.|.++....+|.++|+|++|+|+++|.  ..++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCcc
Confidence            899999999877  778999999999999999999999999999999998877678899999999999999766  4799


Q ss_pred             CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (256)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~  180 (256)
                      +||+|+.....                        .|...+|                   +|+||+++++++++++|++
T Consensus        79 ~g~~v~~~~~~------------------------~g~~~~G-------------------~~Aey~~v~~~~vv~lP~~  115 (146)
T d1o89a1          79 AGQEVLLTGWG------------------------VGENHWG-------------------GLAEQARVKGDWLVAMPQG  115 (146)
T ss_dssp             TTCEEEEECTT------------------------BTTTBCC-------------------SSBSEEEECGGGCEECCTT
T ss_pred             ceeeEEeeccc------------------------ceecCCC-------------------cceeeeeeeeeeEEECCCC
Confidence            99999865432                        4444555                   9999999999999999999


Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVE  207 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~  207 (256)
                      +|+++||+++++..||+.   ....++
T Consensus       116 ls~~eAA~l~~a~~tA~~---~~~~~~  139 (146)
T d1o89a1         116 QAAKEISLSEAPNFAEAI---INNQIQ  139 (146)
T ss_dssp             SCCEEECGGGHHHHHHHH---HTTCCC
T ss_pred             CCHHHHHHHHHHHHHHHH---HHHhhc
Confidence            999999999988888754   344555

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=6.7e-29  Score=199.16  Aligned_cols=153  Identities=18%  Similarity=0.179  Sum_probs=130.0

Q ss_pred             ccceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173           21 IRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (256)
Q Consensus        21 ~t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   98 (256)
                      .+|||+++.++++.  +++++++.|++++|||||||+|+|||++|++.+.|.++....+|.++|+|++|+|++  +.+.+
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            57999999987766  899999999999999999999999999999999999887667899999999999998  45678


Q ss_pred             cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (256)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p  178 (256)
                      +++||+|+.....                        .|...+|                   +|+||+++++++++++|
T Consensus        80 ~~~g~~v~~~~~~------------------------~g~~~~G-------------------~~aey~~v~~~~l~~iP  116 (162)
T d1tt7a1          80 FAEGDEVIATSYE------------------------LGVSRDG-------------------GLSEYASVPGDWLVPLP  116 (162)
T ss_dssp             CCTTCEEEEESTT------------------------BTTTBCC-------------------SSBSSEEECGGGEEECC
T ss_pred             cccceeeEeeecc------------------------ceecccc-------------------ccceEEEecHHHEEECC
Confidence            9999999865432                        4445555                   99999999999999999


Q ss_pred             CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CH
Q 025173          179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GA  219 (256)
Q Consensus       179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~  219 (256)
                      +++++++||.+++...|||.++. ..+...+++|||.|+ |+
T Consensus       117 ~~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~ga~G~  157 (162)
T d1tt7a1         117 QNLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNRIQGR  157 (162)
T ss_dssp             TTCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTTCCSSE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECCcce
Confidence            99999999999999999987542 333445577888876 53

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.93  E-value=1.4e-28  Score=198.80  Aligned_cols=158  Identities=18%  Similarity=0.178  Sum_probs=129.6

Q ss_pred             cccceeEEEecCCCC---cEE--EEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC---------CCCCCeeeeeee
Q 025173           20 IIRCRAAISRIPGKP---LVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP---------MAVFPRILGHEA   85 (256)
Q Consensus        20 ~~t~ka~~~~~~g~~---l~~--~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~---------~~~~p~~~G~e~   85 (256)
                      +.||||++++++|+|   +++  .++|.|+|+++||||||++++||++|+++++|.++.         ...+|.++|+|+
T Consensus         1 m~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~   80 (175)
T d1gu7a1           1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (175)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccc
Confidence            468999999999987   444  566777889999999999999999999999987654         135688999999


Q ss_pred             eEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceee
Q 025173           86 VGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTE  165 (256)
Q Consensus        86 vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~ae  165 (256)
                      +|+|++.|..+..++.||+|.....                             .+                   |+|+|
T Consensus        81 ~g~V~~~~~~~~~~~~g~~v~~~~~-----------------------------~~-------------------g~~ae  112 (175)
T d1gu7a1          81 LFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------NF-------------------GTWRT  112 (175)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS-----------------------------CC-------------------CCSBS
T ss_pred             ccccccccccccccccccceecccc-----------------------------cc-------------------ccccc
Confidence            9999999999999999999974322                             12                   38999


Q ss_pred             eEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHH-hcCCCCCCEEEEECC--CHHHHHHHHH
Q 025173          166 YTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWK-VAEVEEGSTVAIFGL--GAVGLSVLIR  227 (256)
Q Consensus       166 y~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~VlI~Ga--G~vG~~aiql  227 (256)
                      |+++++++++++|++++.+.++  .+...|||+++.. ..++++||+|||+|+  |++|++++|+
T Consensus       113 y~~v~~~~~~~iP~~~~~~~a~--~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ~  175 (175)
T d1gu7a1         113 HALGNDDDFIKLPNPAQSKANG--KPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY  175 (175)
T ss_dssp             EEEEEGGGEEEECCHHHHHHTT--CSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             eeeehhhhccCCCccchhhhhc--cchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEeC
Confidence            9999999999999987644443  4567788887653 467999999999974  6799988774

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.69  E-value=3.3e-16  Score=122.43  Aligned_cols=133  Identities=17%  Similarity=0.161  Sum_probs=99.6

Q ss_pred             ccceeEEEecC--CCC----cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccC
Q 025173           21 IRCRAAISRIP--GKP----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (256)
Q Consensus        21 ~t~ka~~~~~~--g~~----l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~   94 (256)
                      ++.|+|++.+.  |.|    |++++.++|+|++||||||+++.++++........   .  +....+..+++|+|++  +
T Consensus         2 ~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~---~--~~g~~~~g~~vg~Vv~--S   74 (147)
T d1v3va1           2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKR---L--KEGAVMMGQQVARVVE--S   74 (147)
T ss_dssp             CEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGG---S--CTTSBCCCCEEEEEEE--E
T ss_pred             cccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEcccccccccc---c--ccCCccccceEEEEEE--e
Confidence            45788888765  544    89999999999999999999999998865543322   1  2234456688999988  6


Q ss_pred             CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcE
Q 025173           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (256)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~  174 (256)
                      ..++|++||+|...                                                    ++|+||.+++++.+
T Consensus        75 ~~~~f~~GD~V~g~----------------------------------------------------~gw~ey~v~~~~~l  102 (147)
T d1v3va1          75 KNSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKGL  102 (147)
T ss_dssp             SCTTSCTTCEEEEC----------------------------------------------------CCSBSEEEECSSSC
T ss_pred             CCCcccCCCEEEEc----------------------------------------------------cCCEeEEEecccee
Confidence            67889999999742                                                    27999999999999


Q ss_pred             EEcCCCCChh-----hhhhchhhHHH-HHHHHHHhcCCCCCCEEEE
Q 025173          175 VKITPDIPLD-----IACLLSCGVST-GLGAAWKVAEVEEGSTVAI  214 (256)
Q Consensus       175 ~~~p~~l~~~-----~aa~l~~~~~t-a~~~l~~~~~~~~g~~VlI  214 (256)
                      .++|++++..     ..+++.....| ||.++.  ...+.||+||+
T Consensus       103 ~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~--~~~k~Getvv~  146 (147)
T d1v3va1         103 EKLLTEWPDKKIQYHEHVTKGFENMPAAFIEML--NGANLGKAVVT  146 (147)
T ss_dssp             EECCTTCCTTSSCCCEEEEECGGGHHHHHHHHH--TTCCSSEEEEE
T ss_pred             eEccccccccccchhhhHhccccchHHHHHHhh--CCCCCCCEEEe
Confidence            9998765433     34455556666 555554  44577999987

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3e-12  Score=101.81  Aligned_cols=54  Identities=20%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +|+++||++++++.|||+++.+.+++++||+|||+|+ |++|++++|+||.+|++
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~   55 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLK   55 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcc
Confidence            5899999999999999999988999999999999997 99999999999999998

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.26  E-value=4.1e-12  Score=100.88  Aligned_cols=54  Identities=50%  Similarity=0.884  Sum_probs=51.2

Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++++||.+.|++.|+|+++.+++++++||+|||+|+|++|++++|+|+++|++.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~   55 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASR   55 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCc
Confidence            578999999999999999988999999999999999999999999999999984

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=2.5e-12  Score=102.51  Aligned_cols=65  Identities=17%  Similarity=0.018  Sum_probs=57.0

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY  253 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~  253 (256)
                      +|+++||++++++.|||+++.+.+++++||+|||+|+ |++|++++|+||..|++        ++.++..++++
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~--------Vi~~~~s~~k~   66 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK--------LIGTVGTAQKA   66 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCE--------EEEEESSHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCe--------EeecccchHHH
Confidence            5899999999999999999988899999999999987 88999999999999998        45555555443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.23  E-value=8e-12  Score=99.74  Aligned_cols=54  Identities=46%  Similarity=0.795  Sum_probs=51.3

Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++++||.+.|++.|+|+++.+.+++++||+|+|+|+|++|++++|+||..|+++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~   55 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASR   55 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCce
Confidence            578999999999999999888999999999999999999999999999999984

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.22  E-value=9.1e-12  Score=99.30  Aligned_cols=53  Identities=42%  Similarity=0.690  Sum_probs=50.1

Q ss_pred             hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      |.+||.+.|++.|+|+++.+.+++++||+|+|+|+|++|++++|+||++|+++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~   54 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASR   54 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSE
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCce
Confidence            56799999999999999888999999999999999999999999999999984

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.22  E-value=1.5e-11  Score=96.86  Aligned_cols=53  Identities=19%  Similarity=0.189  Sum_probs=50.0

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +++++||.++|++.|||+++ +++++++||+|+|+|+|++|++++|+||.+|++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~   53 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGLH   53 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCCc
Confidence            57899999999999999986 678999999999999999999999999999987

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.21  E-value=7.6e-12  Score=99.41  Aligned_cols=53  Identities=21%  Similarity=0.178  Sum_probs=49.9

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++++||.+++++.|||+++ +++++++||+|||+|+ |++|++++|+||.+|++
T Consensus         1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~   54 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLR   54 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhcccccc
Confidence            58999999999999999987 5689999999999997 99999999999999998

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.19  E-value=2.6e-11  Score=96.81  Aligned_cols=55  Identities=45%  Similarity=0.770  Sum_probs=51.9

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      .++++||.++|++.|+|+++.+.+++++||+|+|+|+|++|++++|++++.|+.+
T Consensus         2 ~P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~   56 (176)
T d1d1ta2           2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASR   56 (176)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred             cCHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCce
Confidence            3589999999999999999889999999999999999999999999999999874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.18  E-value=2.1e-11  Score=96.91  Aligned_cols=54  Identities=52%  Similarity=0.875  Sum_probs=51.2

Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++++||.++|++.|+|+++.+.+++++||+|||+|+|++|++++++++..|+.+
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~   55 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAAR   55 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCce
Confidence            578999999999999999999999999999999999999999999999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=2.6e-11  Score=95.81  Aligned_cols=65  Identities=15%  Similarity=0.207  Sum_probs=55.3

Q ss_pred             CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173          180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY  253 (256)
Q Consensus       180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~  253 (256)
                      ..+++.+|.+.|+..|+|+++ +++++++||+|+|+|+|++|++++|+||++|++        .|.++..++++
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~--------~i~~~~~~~~~   67 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH--------VVAFTTSEAKR   67 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCE--------EEEEESSGGGH
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhccccc--------chhhccchhHH
Confidence            456778888999999999987 679999999999999999999999999999998        45555555443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=3.3e-11  Score=95.25  Aligned_cols=53  Identities=26%  Similarity=0.297  Sum_probs=48.8

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ++.+.||.+.|+..|+|+++ +++++++||+|+|+|+|++|++++|+||.+|++
T Consensus         1 lp~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~   53 (168)
T d1piwa2           1 IPSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAE   53 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhcccc
Confidence            35677899999999999986 578999999999999999999999999999998

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.15  E-value=2.4e-11  Score=96.81  Aligned_cols=54  Identities=33%  Similarity=0.577  Sum_probs=50.5

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +|+|+|++++++++|+|+++ +.+++++||+|+|+|+|++|++++|+||.+|+.+
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~   54 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGR   54 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSC
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccc
Confidence            57899999999999999985 7799999999999999999999999999999974

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=3e-11  Score=83.32  Aligned_cols=54  Identities=13%  Similarity=0.148  Sum_probs=48.5

Q ss_pred             CChhhhhhchhhHHHHHHHHH---HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAW---KVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +|+++|+.++++..|||.+++   +....+++++|||+|+ |++|.+++|++|..|++
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~   58 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQ   58 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCe
Confidence            588999999999999988764   4456789999999988 99999999999999998

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.13  E-value=2e-11  Score=97.32  Aligned_cols=51  Identities=20%  Similarity=0.255  Sum_probs=48.9

Q ss_pred             hhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          184 DIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       184 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +|||++++++.|||+++++.+++++||+|||+|+ |++|++++|+|+..|++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~   52 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGAR   52 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCE
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhcccccc
Confidence            5899999999999999999999999999999987 99999999999999998

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.11  E-value=6.8e-11  Score=93.93  Aligned_cols=55  Identities=33%  Similarity=0.575  Sum_probs=51.8

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++++.|+.++|++.|||+++.+.+++++||+|+|+|+|++|++++|+||.+|+++
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~   55 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASI   55 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccce
Confidence            4678899999999999999999999999999999999999999999999999984

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.10  E-value=2.9e-11  Score=96.62  Aligned_cols=54  Identities=17%  Similarity=0.065  Sum_probs=49.3

Q ss_pred             CChhhhhhchhhHHHHHHHH---HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAA---WKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l---~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +|++|||++++++.|||+++   .+..+.++||+|||+|+ |++|.+++|+||..|++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~   58 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYT   58 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCc
Confidence            58999999999999999664   45678899999999997 99999999999999999

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.10  E-value=6.2e-11  Score=93.07  Aligned_cols=53  Identities=25%  Similarity=0.326  Sum_probs=50.1

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +|+++||+++|++.|||+++ +.+++++||+|||+|+|++|++++|+|+..|++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~   53 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLN   53 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCCe
Confidence            58999999999999999986 678999999999999999999999999999997

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.06  E-value=1.5e-10  Score=91.56  Aligned_cols=54  Identities=57%  Similarity=0.945  Sum_probs=51.2

Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++++||.+.|++.|+|+++.+.+++++||+|+|+|+|++|++++++++..|+.+
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~   55 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKR   55 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhch
Confidence            578999999999999999989999999999999999999999999999999984

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.05  E-value=1.2e-10  Score=93.76  Aligned_cols=54  Identities=17%  Similarity=0.023  Sum_probs=50.8

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEE-CC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIF-GL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~-Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +|+++||++++++.|||+++.+..++++|++|+|+ |+ |++|++++|+||++|++
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~   56 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFN   56 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCe
Confidence            58999999999999999999999999999999997 55 99999999999999998

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=1.9e-10  Score=91.83  Aligned_cols=54  Identities=26%  Similarity=0.271  Sum_probs=49.5

Q ss_pred             ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +++.+|.+.|+..|||+++.+..++++||+|||+|+|++|++++|+|+..|+.+
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~   55 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAEN   55 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSE
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheeccccccccc
Confidence            356788899999999999888889999999999999999999999999999963

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.01  E-value=2.3e-10  Score=91.38  Aligned_cols=48  Identities=27%  Similarity=0.156  Sum_probs=45.3

Q ss_pred             hhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          187 CLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       187 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +++.+++.|||+++.+.+++++||+|||+|+ |++|++++|+||..|++
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~   56 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCK   56 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCE
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCE
Confidence            4677899999999999999999999999998 89999999999999998

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.00  E-value=4.4e-10  Score=88.42  Aligned_cols=52  Identities=29%  Similarity=0.432  Sum_probs=47.2

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +|+|+||++. ++++||+++ +++++++||+|+|+|+|++|++++|+||.+|++
T Consensus         1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~   52 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF   52 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhccc
Confidence            5789998774 788999985 788999999999999999999999999999997

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.96  E-value=6.1e-10  Score=87.67  Aligned_cols=54  Identities=19%  Similarity=0.198  Sum_probs=50.0

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCc
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~  235 (256)
                      +++.+||.++|++.|||+++ ++.++++||+|+|+|+ |++|++++|+++.+|...
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~   55 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT   55 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeeccccccccc
Confidence            57899999999999999986 7789999999999997 999999999999999873

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.94  E-value=7.5e-10  Score=87.46  Aligned_cols=53  Identities=25%  Similarity=0.209  Sum_probs=48.3

Q ss_pred             hhhhhhchhhHHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          183 LDIACLLSCGVSTGLGAAWKVA-EVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +.++|.++|++.|||+++.+.. .+++||+|+|+|+|++|++++|+|+++|+.+
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~   59 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPAT   59 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCE
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcc
Confidence            5688999999999999987765 4899999999999999999999999999984

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.2e-09  Score=86.22  Aligned_cols=53  Identities=21%  Similarity=0.380  Sum_probs=47.7

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +|+++||++. ++++||+++ +++++++||+|+|+|+|++|++++|+|+.+|+++
T Consensus         1 vS~e~Aal~e-pla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~   53 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQ   53 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCce
Confidence            5789998774 888999985 7889999999999999999999999999999974

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=6.1e-10  Score=88.84  Aligned_cols=54  Identities=13%  Similarity=0.148  Sum_probs=46.3

Q ss_pred             CChhhhhhchhhHHHHHHHHH---HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          181 IPLDIACLLSCGVSTGLGAAW---KVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ||+.+||.++++..|||++++   +.....++++|||+|+ |++|.+++|+||.+|++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~   58 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQ   58 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCC
Confidence            578999999999999998754   3334455679999988 99999999999999999

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=9.5e-10  Score=88.18  Aligned_cols=54  Identities=19%  Similarity=0.122  Sum_probs=46.9

Q ss_pred             CChhhhhhchhhHHHHHHHHHHhcCCCCC--CEEEEECC-CHHHHHHHHHHHHcCCCc
Q 025173          181 IPLDIACLLSCGVSTGLGAAWKVAEVEEG--STVAIFGL-GAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~VlI~Ga-G~vG~~aiqla~~~G~~~  235 (256)
                      +|+.+.| ++++..|||+++.+.+++++|  |+|||+|+ |++|++++|+||..|++.
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~   58 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSR   58 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcc
Confidence            4556644 566899999999999999988  88999997 999999999999999983

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.82  E-value=5.5e-09  Score=84.35  Aligned_cols=51  Identities=33%  Similarity=0.257  Sum_probs=47.0

Q ss_pred             hhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          184 DIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       184 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      ++.+.+...++|||+++ +.+++++||+|||+|+|++|++++++|+..|+.+
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~   52 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAV   52 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccc
Confidence            56788889999999986 6899999999999999999999999999999974

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=98.52  E-value=4.1e-08  Score=77.16  Aligned_cols=44  Identities=16%  Similarity=0.003  Sum_probs=36.0

Q ss_pred             hhHHHHHH---HHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          191 CGVSTGLG---AAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       191 ~~~~ta~~---~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      ++..|||.   +|.+....+++++|||+|+ |++|.+++|+||++|++
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~   50 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYD   50 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCc
Confidence            34566664   4555566778999999998 99999999999999999

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.01  E-value=0.013  Score=44.77  Aligned_cols=40  Identities=20%  Similarity=0.093  Sum_probs=32.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhhhc
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYSQ  255 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~~~  255 (256)
                      +..+|+|+|+|-+|+.|++.|+.+|+.        +...+.+.+.+++
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~--------V~~~D~~~~~l~~   70 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQ--------VQIFDINVERLSY   70 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE--------EEEEESCHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCE--------EEEEeCcHHHHHH
Confidence            457899999999999999999999999        4555655555543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.72  E-value=0.014  Score=45.29  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=25.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +..+|+|+|+|-+|+.|++.|+.+|+.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~   54 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAV   54 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCE
Confidence            346899999999999999999999998

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.47  E-value=0.028  Score=42.51  Aligned_cols=36  Identities=11%  Similarity=0.137  Sum_probs=31.3

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +.+..++.++.+|+|+|+|+.+.+++..++..|..+
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~   43 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEK   43 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCC
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCE
Confidence            346677778899999999999999999999999874

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.023  Score=38.66  Aligned_cols=27  Identities=33%  Similarity=0.448  Sum_probs=25.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +|.+|+|+|.|..|+.+++++...|+.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~   30 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVT   30 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCE
Confidence            478899999999999999999999999

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.052  Score=40.96  Aligned_cols=35  Identities=14%  Similarity=0.200  Sum_probs=28.1

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      |.+..-..+|++|||+|+|+.+.+++.-+...|.+
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~   43 (170)
T d1nyta1           9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCA   43 (170)
T ss_dssp             HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceE
Confidence            43333346789999999999999999888888876

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.36  E-value=0.1  Score=39.98  Aligned_cols=29  Identities=14%  Similarity=0.179  Sum_probs=26.2

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          206 VEEGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       206 ~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      --+|+++||+|+ |++|...++.+...|++
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~   49 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAE   49 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccc
Confidence            347999999998 99999999999999998

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.35  E-value=0.18  Score=35.28  Aligned_cols=36  Identities=19%  Similarity=0.113  Sum_probs=30.4

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +.+.....++.+|+|+|+|.+|+=.+..++..|...
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~v   48 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRT   48 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhh
Confidence            345566778999999999999999999999888873

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.085  Score=40.39  Aligned_cols=29  Identities=21%  Similarity=0.346  Sum_probs=26.4

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .....+|+|+|+|+.|+.|+..+..+|.+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~   68 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQ   68 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCE
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccc
Confidence            45568999999999999999999999988

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=91.14  E-value=0.28  Score=36.45  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=29.3

Q ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173          201 WKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHT  236 (256)
Q Consensus       201 ~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~  236 (256)
                      .+...--.+.+|||+|+|.+|.+.++.+...|+..+
T Consensus        16 ~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i   51 (159)
T d1gpja2          16 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAV   51 (159)
T ss_dssp             HHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEE
T ss_pred             HHHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEE
Confidence            344444578899999999999999999999998743

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=90.55  E-value=0.18  Score=37.99  Aligned_cols=29  Identities=21%  Similarity=0.247  Sum_probs=23.3

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC
Q 025173          205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFT  233 (256)
Q Consensus       205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~  233 (256)
                      ...++.+|+|+|+|+.+.+++..+...+.
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~   42 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQ   42 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCc
Confidence            34578899999999999998887776443

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=90.39  E-value=0.13  Score=41.18  Aligned_cols=30  Identities=23%  Similarity=0.230  Sum_probs=25.7

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ......+|+|+|+|..|+.++..+...|.+
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~   55 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQ   55 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTCE
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCCC
Confidence            344557999999999999999998889987

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.22  E-value=0.14  Score=41.60  Aligned_cols=27  Identities=15%  Similarity=0.115  Sum_probs=24.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~  234 (256)
                      +|+++||+|+ +++|.+.++.+...|++
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~   51 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQ   51 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE
Confidence            4799999998 99999999999999998

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.89  E-value=0.18  Score=39.51  Aligned_cols=30  Identities=17%  Similarity=0.147  Sum_probs=26.9

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      ..+.+++|+|+|+|+.|+.++..++..|..
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~   74 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGYT   74 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhccc
Confidence            346789999999999999999999999988

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.37  E-value=0.49  Score=35.42  Aligned_cols=40  Identities=18%  Similarity=0.202  Sum_probs=33.6

Q ss_pred             HHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          195 TGLGAAWKVAEV-EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       195 ta~~~l~~~~~~-~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +.+.++.+..++ -.|++|+|.|-|-+|.-.++.++..|++
T Consensus         9 S~~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~   49 (163)
T d1li4a1           9 SLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGAR   49 (163)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             hHHHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCe
Confidence            445556666654 5899999999999999999999999999

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=89.36  E-value=0.59  Score=36.10  Aligned_cols=27  Identities=37%  Similarity=0.353  Sum_probs=26.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .|.+|+|.|.|.+|..+++++...|++
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gak   52 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQ   52 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            689999999999999999999999998

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=89.12  E-value=0.49  Score=37.68  Aligned_cols=28  Identities=36%  Similarity=0.380  Sum_probs=26.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      -.|.+|+|.|.|.+|..+++++...|++
T Consensus        29 l~g~~v~IqGfGnVG~~~a~~L~~~Gak   56 (242)
T d1v9la1          29 IEGKTVAIQGMGNVGRWTAYWLEKMGAK   56 (242)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence            4789999999999999999999999998

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.94  E-value=0.18  Score=35.07  Aligned_cols=28  Identities=18%  Similarity=0.014  Sum_probs=25.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      .|.+|||+|+|.+|..-++.+...|+..
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v   38 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARL   38 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeE
Confidence            4789999999999999999999999983

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.69  E-value=0.14  Score=36.09  Aligned_cols=35  Identities=14%  Similarity=0.025  Sum_probs=28.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCccceecce
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPT  242 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~  242 (256)
                      ..++++|+|+|.+|+=.+++++..|...++....+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            44889999999999999999999999854444333

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.57  E-value=0.29  Score=34.19  Aligned_cols=30  Identities=20%  Similarity=0.293  Sum_probs=25.9

Q ss_pred             CCCCC-CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          205 EVEEG-STVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       205 ~~~~g-~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .+.++ .+|.|+|+|-+|.+.++-|+.+|.+
T Consensus         6 ~~~~~~~kigIlGgGQL~rMla~aA~~lG~~   36 (111)
T d1kjqa2           6 ALRPAATRVMLLGSGELGKEVAIECQRLGVE   36 (111)
T ss_dssp             TTSTTCCEEEEESCSHHHHHHHHHHHTTTCE
T ss_pred             CCCCCCCEEEEEeCCHHHHHHHHHHHHCCCE
Confidence            34454 4699999999999999999999998

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=88.53  E-value=0.19  Score=38.13  Aligned_cols=34  Identities=12%  Similarity=0.165  Sum_probs=27.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCccceec
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHIL  240 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~  240 (256)
                      -.+.+|+|+|+|+.+.+++..+...|.+.+..+.
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~n   49 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFN   49 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeec
Confidence            3678999999999999999888888987544333

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.07  E-value=0.15  Score=37.40  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=25.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .|.+|||+|+|.+|+--++.+...|++
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~   38 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCK   38 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            589999999999999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.82  E-value=0.69  Score=32.43  Aligned_cols=36  Identities=14%  Similarity=0.097  Sum_probs=29.4

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      +.....-..+++|+|+|+|.+|+-+++.+..+|...
T Consensus        21 i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~V   56 (123)
T d1nhpa2          21 LKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKV   56 (123)
T ss_dssp             HHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHhhccCCCEEEEECChHHHHHHHHHhhccceEE
Confidence            334444566789999999999999999999999883

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=87.31  E-value=0.62  Score=37.40  Aligned_cols=28  Identities=25%  Similarity=0.287  Sum_probs=26.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      -.|.+|+|.|.|.+|..+++++...|++
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e~Gak   61 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAELGAK   61 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence            4689999999999999999999999999

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.30  E-value=0.25  Score=39.16  Aligned_cols=40  Identities=20%  Similarity=0.172  Sum_probs=34.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeec
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSE  248 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~  248 (256)
                      ..+|+|+|+|++|..++..+-..|..+...+..|.|-.++
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sN   69 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSN   69 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhh
Confidence            4689999999999999999999999988888887765544

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.25  E-value=0.2  Score=34.99  Aligned_cols=30  Identities=17%  Similarity=0.110  Sum_probs=26.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPH  238 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~  238 (256)
                      .++|+|+|+|.+|+=+++.+...|.+.++.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlv   51 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTIL   51 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEE
Confidence            478999999999999999999999984443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.89  E-value=0.24  Score=34.74  Aligned_cols=34  Identities=15%  Similarity=0.206  Sum_probs=27.9

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173          205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH  238 (256)
Q Consensus       205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~  238 (256)
                      .++..++|+|+|+|.+|+=+++.+...|.+.++.
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv   51 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIKRLGIDSYIF   51 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHHhccccceee
Confidence            4455689999999999999999999999884433

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=85.93  E-value=1.2  Score=35.15  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=31.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhh
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQE  251 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~  251 (256)
                      -.|.+|+|.|-|.+|..+++++...|++        ++.++.+.+
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Gak--------vv~~d~~~~   73 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGAK--------LVVTDVNKA   73 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCE--------EEEECSCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE--------EEeecccHH
Confidence            4689999999999999999999999999        555555443

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=85.27  E-value=0.74  Score=32.24  Aligned_cols=31  Identities=19%  Similarity=0.222  Sum_probs=26.9

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      .++++++|+|+|+|.+|.=++..++..|...
T Consensus        26 ~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~V   56 (121)
T d1d7ya2          26 GLRPQSRLLIVGGGVIGLELAATARTAGVHV   56 (121)
T ss_dssp             HCCTTCEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             hhhcCCeEEEECcchhHHHHHHHhhcccceE
Confidence            3567899999999999999999999998873

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.09  E-value=0.26  Score=34.80  Aligned_cols=30  Identities=20%  Similarity=0.130  Sum_probs=26.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPH  238 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~  238 (256)
                      -++++|+|+|.+|+=+++++..+|...++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii   52 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVV   52 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEE
Confidence            378999999999999999999999995443

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=85.00  E-value=0.28  Score=34.89  Aligned_cols=32  Identities=22%  Similarity=0.145  Sum_probs=27.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH  238 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~  238 (256)
                      +..++++|+|+|.+|+=.+++.+..|.+.++.
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtiv   55 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVV   55 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEE
Confidence            44589999999999999999999999984443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=84.98  E-value=1.2  Score=33.18  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=38.6

Q ss_pred             HHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhh
Q 025173          196 GLGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEM  252 (256)
Q Consensus       196 a~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~  252 (256)
                      .+-++.+... +-.|++++|.|=|-+|.-.++-+|.+|++         |.+.|.++.
T Consensus         9 ~~d~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~---------V~V~E~DPi   57 (163)
T d1v8ba1           9 LPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGAR---------VYITEIDPI   57 (163)
T ss_dssp             HHHHHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCE---------EEEECSCHH
T ss_pred             HHHHHHHHhCceecCCEEEEecccccchhHHHHHHhCCCE---------EEEEecCch
Confidence            3445556555 46899999999999999999999999999         667776664

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.57  E-value=0.55  Score=38.54  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=25.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .|.+|+|.|-|.+|..+++++...|++
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Gak   61 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGAK   61 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            578999999999999999999999998

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=84.49  E-value=0.8  Score=32.58  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=28.2

Q ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173          204 AEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHT  236 (256)
Q Consensus       204 ~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~  236 (256)
                      ..++++.+|+|+|+|.+|+=++..++..|...+
T Consensus        30 ~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vt   62 (133)
T d1q1ra2          30 RQLIADNRLVVIGGGYIGLEVAATAIKANMHVT   62 (133)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             HhhccCCEEEEECCchHHHHHHHHHHhhCccee
Confidence            445678999999999999999999999998843

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=84.21  E-value=0.58  Score=32.43  Aligned_cols=27  Identities=22%  Similarity=0.203  Sum_probs=24.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRH  235 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~  235 (256)
                      .++|+|+|+|.+|+-+++.++..|.+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~V   47 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKT   47 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEE
Confidence            378999999999999999999999873

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.17  E-value=0.28  Score=34.67  Aligned_cols=30  Identities=13%  Similarity=-0.110  Sum_probs=26.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPH  238 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~  238 (256)
                      .++++|+|+|.+|+=.+++++.+|...++.
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii   49 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVM   49 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEE
Confidence            368999999999999999999999985544

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.15  E-value=0.99  Score=34.79  Aligned_cols=34  Identities=15%  Similarity=0.191  Sum_probs=28.7

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      +.+..++++|++||-+|+|. |..++.+|+..|..
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~  100 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEK  100 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTT
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCC
Confidence            45788999999999999866 88888999988753

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.33  E-value=0.36  Score=33.48  Aligned_cols=29  Identities=17%  Similarity=0.174  Sum_probs=25.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173          209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTP  237 (256)
Q Consensus       209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~  237 (256)
                      .++++|+|+|.+|+=+++.++..|...++
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtl   49 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSV   49 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEE
Confidence            37999999999999999999999988433

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.02  E-value=0.43  Score=31.20  Aligned_cols=25  Identities=16%  Similarity=0.084  Sum_probs=23.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173          210 STVAIFGLGAVGLSVLIRIHLKFTR  234 (256)
Q Consensus       210 ~~VlI~GaG~vG~~aiqla~~~G~~  234 (256)
                      .+|.|+|+|-+|.+.++-++.+|.+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~   26 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA   26 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE
Confidence            4789999999999999999999998

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.22  E-value=1.8  Score=33.97  Aligned_cols=28  Identities=29%  Similarity=0.344  Sum_probs=24.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCC
Q 025173          207 EEGSTVAIFGLGAVGLSVLIRI-HLKFTR  234 (256)
Q Consensus       207 ~~g~~VlI~GaG~vG~~aiqla-~~~G~~  234 (256)
                      -.|.+|+|.|.|.+|..+++++ +..|++
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~   57 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGSK   57 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCCE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCCc
Confidence            4688999999999999999887 567998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=82.00  E-value=0.31  Score=34.41  Aligned_cols=30  Identities=17%  Similarity=0.079  Sum_probs=26.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173          208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTP  237 (256)
Q Consensus       208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~  237 (256)
                      ..++++|+|+|.+|+=++++++.+|.+.++
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtv   53 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTV   53 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEE
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEE
Confidence            458999999999999999999999998443

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.86  E-value=0.6  Score=33.97  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=29.3

Q ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173          204 AEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP  237 (256)
Q Consensus       204 ~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~  237 (256)
                      .....|++|+|+|+|.+|.-++..+...|+..+.
T Consensus        24 ~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~   57 (162)
T d1ps9a2          24 DKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ   57 (162)
T ss_dssp             SCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             CccccCCceEEEcCchhHHHHHHHHHHcCCccce
Confidence            4667899999999999999999999999986433

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.23  E-value=0.97  Score=31.64  Aligned_cols=28  Identities=11%  Similarity=0.115  Sum_probs=25.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173          210 STVAIFGLGAVGLSVLIRIHLKFTRHTP  237 (256)
Q Consensus       210 ~~VlI~GaG~vG~~aiqla~~~G~~~~~  237 (256)
                      ++|+|+|+|.+|+=++..++.+|.+.++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtl   50 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSL   50 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEE
Confidence            7899999999999999999999988433